Multiple sequence alignment - TraesCS2A01G445600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G445600 chr2A 100.000 5247 0 0 1 5247 695152115 695157361 0.000000e+00 9690.0
1 TraesCS2A01G445600 chr2A 82.143 588 94 10 1958 2538 695295403 695295986 1.310000e-135 494.0
2 TraesCS2A01G445600 chr2A 86.905 420 53 2 2791 3209 695296456 695296874 2.210000e-128 470.0
3 TraesCS2A01G445600 chr2A 78.217 785 123 25 1769 2531 695161524 695162282 4.790000e-125 459.0
4 TraesCS2A01G445600 chr2A 81.450 469 79 8 2749 3213 727713302 727712838 1.380000e-100 377.0
5 TraesCS2A01G445600 chr2A 82.828 297 51 0 2789 3085 695187696 695187992 3.120000e-67 267.0
6 TraesCS2A01G445600 chr2A 81.915 188 31 3 355 540 712313391 712313577 7.040000e-34 156.0
7 TraesCS2A01G445600 chr2D 91.114 4040 231 38 655 4660 555613116 555617061 0.000000e+00 5354.0
8 TraesCS2A01G445600 chr2D 75.296 1518 297 51 1738 3213 593173498 593172017 0.000000e+00 654.0
9 TraesCS2A01G445600 chr2D 85.300 483 61 9 2736 3212 555870170 555870648 1.700000e-134 490.0
10 TraesCS2A01G445600 chr2D 78.723 752 136 17 1769 2515 555852795 555853527 1.020000e-131 481.0
11 TraesCS2A01G445600 chr2D 81.895 475 80 4 2044 2512 555729082 555729556 3.810000e-106 396.0
12 TraesCS2A01G445600 chr2D 76.434 802 148 28 1738 2530 593205777 593205008 3.810000e-106 396.0
13 TraesCS2A01G445600 chr2D 88.552 297 20 7 1 290 555578498 555578787 1.080000e-91 348.0
14 TraesCS2A01G445600 chr2D 88.542 192 15 5 4789 4976 555617084 555617272 5.290000e-55 226.0
15 TraesCS2A01G445600 chr2D 85.106 188 25 3 355 540 618178845 618178659 6.940000e-44 189.0
16 TraesCS2A01G445600 chr2D 85.047 107 14 2 5140 5245 14392857 14392962 2.000000e-19 108.0
17 TraesCS2A01G445600 chr2B 91.781 3796 215 39 590 4347 662375573 662379309 0.000000e+00 5192.0
18 TraesCS2A01G445600 chr2B 79.022 777 133 21 1769 2535 662586606 662587362 6.060000e-139 505.0
19 TraesCS2A01G445600 chr2B 84.711 484 63 10 2736 3213 662652103 662652581 1.710000e-129 473.0
20 TraesCS2A01G445600 chr2B 84.211 418 64 2 2784 3200 662579785 662580201 6.330000e-109 405.0
21 TraesCS2A01G445600 chr2B 90.877 285 19 3 1 285 662375129 662375406 4.960000e-100 375.0
22 TraesCS2A01G445600 chr2B 86.813 182 21 3 1148 1327 662650962 662651142 3.200000e-47 200.0
23 TraesCS2A01G445600 chrUn 84.424 321 30 13 4343 4657 428164466 428164772 1.100000e-76 298.0
24 TraesCS2A01G445600 chrUn 84.896 192 15 9 4789 4977 428164798 428164978 1.160000e-41 182.0
25 TraesCS2A01G445600 chrUn 80.749 187 35 1 355 540 199304621 199304435 1.520000e-30 145.0
26 TraesCS2A01G445600 chrUn 93.548 93 6 0 4657 4749 55723612 55723704 7.090000e-29 139.0
27 TraesCS2A01G445600 chr4D 84.239 184 28 1 358 540 182068696 182068513 1.500000e-40 178.0
28 TraesCS2A01G445600 chr3B 83.871 186 27 3 356 540 398900014 398900197 1.940000e-39 174.0
29 TraesCS2A01G445600 chr3B 81.283 187 34 1 355 540 189506969 189507155 3.270000e-32 150.0
30 TraesCS2A01G445600 chr3B 87.179 78 10 0 5146 5223 204298136 204298059 7.240000e-14 89.8
31 TraesCS2A01G445600 chr1B 97.849 93 2 0 4653 4745 490725846 490725754 1.510000e-35 161.0
32 TraesCS2A01G445600 chr3D 92.727 110 6 2 4633 4741 12881635 12881743 1.960000e-34 158.0
33 TraesCS2A01G445600 chr3D 94.000 100 6 0 4650 4749 71371429 71371528 9.100000e-33 152.0
34 TraesCS2A01G445600 chr3D 95.699 93 4 0 4654 4746 255449929 255449837 3.270000e-32 150.0
35 TraesCS2A01G445600 chr7B 95.833 96 4 0 4650 4745 734366934 734366839 7.040000e-34 156.0
36 TraesCS2A01G445600 chr7D 94.898 98 5 0 4655 4752 406244541 406244638 2.530000e-33 154.0
37 TraesCS2A01G445600 chr7D 94.898 98 4 1 4654 4751 386507912 386508008 9.100000e-33 152.0
38 TraesCS2A01G445600 chr7D 83.516 91 13 2 5138 5228 569414363 569414451 3.370000e-12 84.2
39 TraesCS2A01G445600 chr6B 94.118 102 4 2 4655 4755 546656660 546656560 2.530000e-33 154.0
40 TraesCS2A01G445600 chr6B 88.889 81 9 0 5145 5225 524466789 524466869 3.340000e-17 100.0
41 TraesCS2A01G445600 chr6B 85.556 90 9 4 5144 5231 604838086 604837999 2.010000e-14 91.6
42 TraesCS2A01G445600 chr4B 82.162 185 25 6 356 538 819453 819275 9.100000e-33 152.0
43 TraesCS2A01G445600 chr4B 86.667 90 11 1 5140 5228 182632506 182632595 1.200000e-16 99.0
44 TraesCS2A01G445600 chr5B 80.749 187 35 1 355 540 102433552 102433738 1.520000e-30 145.0
45 TraesCS2A01G445600 chr3A 80.105 191 32 6 354 540 544423702 544423514 2.550000e-28 137.0
46 TraesCS2A01G445600 chr5A 88.372 86 10 0 5146 5231 549199813 549199728 2.580000e-18 104.0
47 TraesCS2A01G445600 chr6A 84.270 89 14 0 5140 5228 142784219 142784307 2.600000e-13 87.9
48 TraesCS2A01G445600 chr7A 82.796 93 14 2 5137 5228 729258719 729258810 1.210000e-11 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G445600 chr2A 695152115 695157361 5246 False 9690.0 9690 100.000 1 5247 1 chr2A.!!$F1 5246
1 TraesCS2A01G445600 chr2A 695295403 695296874 1471 False 482.0 494 84.524 1958 3209 2 chr2A.!!$F5 1251
2 TraesCS2A01G445600 chr2A 695161524 695162282 758 False 459.0 459 78.217 1769 2531 1 chr2A.!!$F2 762
3 TraesCS2A01G445600 chr2D 555613116 555617272 4156 False 2790.0 5354 89.828 655 4976 2 chr2D.!!$F6 4321
4 TraesCS2A01G445600 chr2D 593172017 593173498 1481 True 654.0 654 75.296 1738 3213 1 chr2D.!!$R1 1475
5 TraesCS2A01G445600 chr2D 555852795 555853527 732 False 481.0 481 78.723 1769 2515 1 chr2D.!!$F4 746
6 TraesCS2A01G445600 chr2D 593205008 593205777 769 True 396.0 396 76.434 1738 2530 1 chr2D.!!$R2 792
7 TraesCS2A01G445600 chr2B 662375129 662379309 4180 False 2783.5 5192 91.329 1 4347 2 chr2B.!!$F3 4346
8 TraesCS2A01G445600 chr2B 662586606 662587362 756 False 505.0 505 79.022 1769 2535 1 chr2B.!!$F2 766
9 TraesCS2A01G445600 chr2B 662650962 662652581 1619 False 336.5 473 85.762 1148 3213 2 chr2B.!!$F4 2065
10 TraesCS2A01G445600 chrUn 428164466 428164978 512 False 240.0 298 84.660 4343 4977 2 chrUn.!!$F2 634

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
756 783 0.035439 ATCTAACCACTGGGCCAACG 60.035 55.0 8.04 0.00 37.90 4.10 F
1100 1132 0.103937 GAGGCATTCTCCTCGTCCTG 59.896 60.0 0.00 0.00 42.74 3.86 F
1422 1455 0.250234 GACTATGGTGCTGACCTGCA 59.750 55.0 0.00 0.00 43.58 4.41 F
1706 1775 0.534412 AGTGTCTCCGCTTCATCCAG 59.466 55.0 0.00 0.00 0.00 3.86 F
2586 2739 0.636101 TTAATGGATTGGCCTGGGCT 59.364 50.0 21.72 1.07 41.60 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2572 2710 0.615827 AAGAAAGCCCAGGCCAATCC 60.616 55.000 5.01 0.00 43.17 3.01 R
2996 3397 0.451783 GCAAGCCTATCCCAACGTTG 59.548 55.000 21.47 21.47 0.00 4.10 R
3376 3778 2.632537 AGAGGTCCAAAGGTGTATGGT 58.367 47.619 0.00 0.00 37.94 3.55 R
3440 3842 5.957842 AATTGCAGACAACGGATAGAAAA 57.042 34.783 0.00 0.00 38.99 2.29 R
4542 4951 1.065273 CAATTCTGCATGCCGAGCC 59.935 57.895 16.68 0.00 0.00 4.70 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.202452 GGTTACCTAACACGGGATCCG 60.202 57.143 5.45 4.67 41.70 4.18
67 68 0.461135 GGGTCGTATTGGGCGAGTAA 59.539 55.000 0.00 0.00 39.14 2.24
81 82 7.136289 TGGGCGAGTAAAGTTTTATTTGTAG 57.864 36.000 0.00 0.00 0.00 2.74
113 114 1.996798 AAGGTGACTCTTGGACTCGA 58.003 50.000 0.00 0.00 42.68 4.04
121 122 1.543802 CTCTTGGACTCGAAGTGCTCT 59.456 52.381 7.71 0.00 37.46 4.09
143 144 3.836562 TGGGAAGAAACTAGAGTACCACC 59.163 47.826 0.00 0.00 0.00 4.61
146 147 4.527427 GGAAGAAACTAGAGTACCACCACT 59.473 45.833 0.00 0.00 0.00 4.00
152 153 1.558233 AGAGTACCACCACTGCCTAC 58.442 55.000 0.00 0.00 0.00 3.18
159 160 1.899814 CCACCACTGCCTACTTGTCTA 59.100 52.381 0.00 0.00 0.00 2.59
160 161 2.501723 CCACCACTGCCTACTTGTCTAT 59.498 50.000 0.00 0.00 0.00 1.98
161 162 3.430929 CCACCACTGCCTACTTGTCTATC 60.431 52.174 0.00 0.00 0.00 2.08
162 163 3.449018 CACCACTGCCTACTTGTCTATCT 59.551 47.826 0.00 0.00 0.00 1.98
163 164 4.645136 CACCACTGCCTACTTGTCTATCTA 59.355 45.833 0.00 0.00 0.00 1.98
164 165 5.303078 CACCACTGCCTACTTGTCTATCTAT 59.697 44.000 0.00 0.00 0.00 1.98
165 166 6.490381 CACCACTGCCTACTTGTCTATCTATA 59.510 42.308 0.00 0.00 0.00 1.31
190 191 7.553881 TGATAAAACCTATGTAAGCTGCTTC 57.446 36.000 19.62 11.06 0.00 3.86
204 205 0.669318 TGCTTCGTTGTCGATGGACC 60.669 55.000 5.33 0.00 45.65 4.46
210 211 0.392998 GTTGTCGATGGACCATGGCT 60.393 55.000 12.99 0.00 42.73 4.75
241 242 2.093658 ACGTGGTGGAGATGAATGGTAC 60.094 50.000 0.00 0.00 0.00 3.34
249 250 1.480954 AGATGAATGGTACGCCTCGTT 59.519 47.619 0.00 0.00 41.54 3.85
262 263 1.567504 CCTCGTTGAATATTCCGCGT 58.432 50.000 20.52 0.00 0.00 6.01
277 278 1.142097 GCGTCCCTCACCTAAGCTC 59.858 63.158 0.00 0.00 0.00 4.09
285 286 3.452627 CCCTCACCTAAGCTCAAGTACAT 59.547 47.826 0.00 0.00 0.00 2.29
305 332 2.563702 TCATCATCAAGCATAGCGCAA 58.436 42.857 11.47 0.00 46.13 4.85
317 344 1.514678 TAGCGCAACAGCAACCCTTG 61.515 55.000 11.47 0.00 40.15 3.61
321 348 1.570813 GCAACAGCAACCCTTGTTTC 58.429 50.000 0.00 0.00 30.42 2.78
331 358 1.420138 ACCCTTGTTTCGTCATCCACT 59.580 47.619 0.00 0.00 0.00 4.00
333 360 1.806542 CCTTGTTTCGTCATCCACTGG 59.193 52.381 0.00 0.00 0.00 4.00
351 378 2.420022 CTGGTACCGGAGCAAGAAAATG 59.580 50.000 16.40 0.00 34.44 2.32
357 384 2.091541 CGGAGCAAGAAAATGGGCTTA 58.908 47.619 0.00 0.00 36.59 3.09
358 385 2.098117 CGGAGCAAGAAAATGGGCTTAG 59.902 50.000 0.00 0.00 36.59 2.18
359 386 2.428530 GGAGCAAGAAAATGGGCTTAGG 59.571 50.000 0.00 0.00 36.59 2.69
378 405 6.514048 GCTTAGGCCTTTTACAATGCTAGATG 60.514 42.308 12.58 0.00 0.00 2.90
379 406 3.633986 AGGCCTTTTACAATGCTAGATGC 59.366 43.478 0.00 0.00 43.25 3.91
381 408 4.098501 GGCCTTTTACAATGCTAGATGCTT 59.901 41.667 0.00 0.00 43.37 3.91
383 410 6.433766 GCCTTTTACAATGCTAGATGCTTAG 58.566 40.000 0.00 0.00 43.37 2.18
385 412 7.201732 GCCTTTTACAATGCTAGATGCTTAGAA 60.202 37.037 0.00 0.00 43.37 2.10
386 413 8.677300 CCTTTTACAATGCTAGATGCTTAGAAA 58.323 33.333 0.00 0.00 43.37 2.52
387 414 9.713740 CTTTTACAATGCTAGATGCTTAGAAAG 57.286 33.333 0.00 0.00 43.37 2.62
388 415 9.448438 TTTTACAATGCTAGATGCTTAGAAAGA 57.552 29.630 0.00 0.00 43.37 2.52
391 418 7.052873 ACAATGCTAGATGCTTAGAAAGATGT 58.947 34.615 0.00 0.00 43.37 3.06
392 419 7.555554 ACAATGCTAGATGCTTAGAAAGATGTT 59.444 33.333 0.00 0.00 43.37 2.71
393 420 8.404000 CAATGCTAGATGCTTAGAAAGATGTTT 58.596 33.333 0.00 0.00 43.37 2.83
396 423 9.448438 TGCTAGATGCTTAGAAAGATGTTTTAA 57.552 29.630 0.00 0.00 43.37 1.52
422 449 9.487790 AAAAATAAATCCGATTTTTCTGAAGCA 57.512 25.926 11.56 0.00 40.70 3.91
423 450 9.657419 AAAATAAATCCGATTTTTCTGAAGCAT 57.343 25.926 11.56 0.00 33.68 3.79
424 451 8.862550 AATAAATCCGATTTTTCTGAAGCATC 57.137 30.769 11.56 0.00 33.82 3.91
425 452 5.902613 AATCCGATTTTTCTGAAGCATCA 57.097 34.783 10.00 0.00 0.00 3.07
426 453 7.475015 TAAATCCGATTTTTCTGAAGCATCAG 58.525 34.615 12.75 12.75 42.41 2.90
427 454 7.121168 TAAATCCGATTTTTCTGAAGCATCAGT 59.879 33.333 17.84 0.00 42.10 3.41
466 493 6.846325 AAAACGCCTAACTAAGCATCTATC 57.154 37.500 0.00 0.00 0.00 2.08
467 494 4.522722 ACGCCTAACTAAGCATCTATCC 57.477 45.455 0.00 0.00 0.00 2.59
468 495 4.153411 ACGCCTAACTAAGCATCTATCCT 58.847 43.478 0.00 0.00 0.00 3.24
469 496 4.021894 ACGCCTAACTAAGCATCTATCCTG 60.022 45.833 0.00 0.00 0.00 3.86
470 497 4.021894 CGCCTAACTAAGCATCTATCCTGT 60.022 45.833 0.00 0.00 0.00 4.00
471 498 5.183331 CGCCTAACTAAGCATCTATCCTGTA 59.817 44.000 0.00 0.00 0.00 2.74
472 499 6.294564 CGCCTAACTAAGCATCTATCCTGTAA 60.295 42.308 0.00 0.00 0.00 2.41
473 500 7.442656 GCCTAACTAAGCATCTATCCTGTAAA 58.557 38.462 0.00 0.00 0.00 2.01
474 501 7.931948 GCCTAACTAAGCATCTATCCTGTAAAA 59.068 37.037 0.00 0.00 0.00 1.52
475 502 9.832445 CCTAACTAAGCATCTATCCTGTAAAAA 57.168 33.333 0.00 0.00 0.00 1.94
483 510 9.780186 AGCATCTATCCTGTAAAAATAAGTACC 57.220 33.333 0.00 0.00 0.00 3.34
484 511 8.709646 GCATCTATCCTGTAAAAATAAGTACCG 58.290 37.037 0.00 0.00 0.00 4.02
485 512 9.976511 CATCTATCCTGTAAAAATAAGTACCGA 57.023 33.333 0.00 0.00 0.00 4.69
487 514 9.976511 TCTATCCTGTAAAAATAAGTACCGATG 57.023 33.333 0.00 0.00 0.00 3.84
488 515 6.913873 TCCTGTAAAAATAAGTACCGATGC 57.086 37.500 0.00 0.00 0.00 3.91
489 516 6.646267 TCCTGTAAAAATAAGTACCGATGCT 58.354 36.000 0.00 0.00 0.00 3.79
490 517 7.107542 TCCTGTAAAAATAAGTACCGATGCTT 58.892 34.615 0.00 0.00 34.77 3.91
491 518 8.259411 TCCTGTAAAAATAAGTACCGATGCTTA 58.741 33.333 0.00 0.00 37.41 3.09
492 519 8.548721 CCTGTAAAAATAAGTACCGATGCTTAG 58.451 37.037 0.00 0.00 36.59 2.18
493 520 9.309516 CTGTAAAAATAAGTACCGATGCTTAGA 57.690 33.333 0.00 0.00 36.59 2.10
494 521 9.309516 TGTAAAAATAAGTACCGATGCTTAGAG 57.690 33.333 0.00 0.00 36.59 2.43
495 522 9.525409 GTAAAAATAAGTACCGATGCTTAGAGA 57.475 33.333 0.00 0.00 36.59 3.10
497 524 9.444600 AAAAATAAGTACCGATGCTTAGAGAAA 57.555 29.630 0.00 0.00 36.59 2.52
498 525 8.649973 AAATAAGTACCGATGCTTAGAGAAAG 57.350 34.615 0.00 0.00 36.59 2.62
499 526 5.662674 AAGTACCGATGCTTAGAGAAAGT 57.337 39.130 0.00 0.00 37.53 2.66
500 527 5.662674 AGTACCGATGCTTAGAGAAAGTT 57.337 39.130 0.00 0.00 37.53 2.66
501 528 6.038997 AGTACCGATGCTTAGAGAAAGTTT 57.961 37.500 0.00 0.00 37.53 2.66
502 529 7.166691 AGTACCGATGCTTAGAGAAAGTTTA 57.833 36.000 0.00 0.00 37.53 2.01
503 530 7.259161 AGTACCGATGCTTAGAGAAAGTTTAG 58.741 38.462 0.00 0.00 37.53 1.85
504 531 4.870991 ACCGATGCTTAGAGAAAGTTTAGC 59.129 41.667 1.13 1.13 37.53 3.09
505 532 5.112686 CCGATGCTTAGAGAAAGTTTAGCT 58.887 41.667 8.39 0.00 37.53 3.32
506 533 5.582665 CCGATGCTTAGAGAAAGTTTAGCTT 59.417 40.000 8.39 3.00 37.53 3.74
507 534 6.757010 CCGATGCTTAGAGAAAGTTTAGCTTA 59.243 38.462 8.39 0.00 37.53 3.09
508 535 7.439655 CCGATGCTTAGAGAAAGTTTAGCTTAT 59.560 37.037 8.39 0.00 37.53 1.73
509 536 8.821894 CGATGCTTAGAGAAAGTTTAGCTTATT 58.178 33.333 8.39 0.00 37.53 1.40
512 539 9.726438 TGCTTAGAGAAAGTTTAGCTTATTTCT 57.274 29.630 12.28 12.28 42.96 2.52
556 583 3.200165 AGGCCTGTCTAATTTAGGTCCAC 59.800 47.826 3.11 0.00 36.89 4.02
617 644 9.974980 ATTTTATGTGACGTGGTTTCTTATTTT 57.025 25.926 0.00 0.00 0.00 1.82
618 645 9.804758 TTTTATGTGACGTGGTTTCTTATTTTT 57.195 25.926 0.00 0.00 0.00 1.94
631 658 6.569179 TTCTTATTTTTCCCGGAACAAGAG 57.431 37.500 0.73 3.09 0.00 2.85
632 659 5.871834 TCTTATTTTTCCCGGAACAAGAGA 58.128 37.500 0.73 5.29 0.00 3.10
633 660 5.704053 TCTTATTTTTCCCGGAACAAGAGAC 59.296 40.000 0.73 0.00 0.00 3.36
634 661 3.570912 TTTTTCCCGGAACAAGAGACT 57.429 42.857 0.73 0.00 0.00 3.24
635 662 2.543777 TTTCCCGGAACAAGAGACTG 57.456 50.000 0.73 0.00 0.00 3.51
636 663 0.685097 TTCCCGGAACAAGAGACTGG 59.315 55.000 0.73 0.00 0.00 4.00
637 664 1.376037 CCCGGAACAAGAGACTGGC 60.376 63.158 0.73 0.00 0.00 4.85
639 666 0.250295 CCGGAACAAGAGACTGGCAA 60.250 55.000 0.00 0.00 0.00 4.52
640 667 1.151668 CGGAACAAGAGACTGGCAAG 58.848 55.000 0.00 0.00 0.00 4.01
641 668 1.541233 CGGAACAAGAGACTGGCAAGT 60.541 52.381 0.00 0.00 40.21 3.16
642 669 2.288825 CGGAACAAGAGACTGGCAAGTA 60.289 50.000 0.00 0.00 36.52 2.24
711 738 6.827727 TCTACACTGGGCTAATCTTATTTCC 58.172 40.000 0.00 0.00 0.00 3.13
721 748 5.772169 GCTAATCTTATTTCCTTGATGGGCT 59.228 40.000 0.00 0.00 36.20 5.19
735 762 3.269381 TGATGGGCTGGAAGGATTTAACT 59.731 43.478 0.00 0.00 0.00 2.24
756 783 0.035439 ATCTAACCACTGGGCCAACG 60.035 55.000 8.04 0.00 37.90 4.10
757 784 1.674322 CTAACCACTGGGCCAACGG 60.674 63.158 17.28 17.28 37.90 4.44
758 785 2.119484 CTAACCACTGGGCCAACGGA 62.119 60.000 23.96 5.24 37.90 4.69
759 786 2.400269 TAACCACTGGGCCAACGGAC 62.400 60.000 23.96 0.00 37.90 4.79
760 787 4.263572 CCACTGGGCCAACGGACA 62.264 66.667 14.41 0.00 27.52 4.02
761 788 2.203280 CACTGGGCCAACGGACAA 60.203 61.111 8.04 0.00 27.52 3.18
762 789 1.826054 CACTGGGCCAACGGACAAA 60.826 57.895 8.04 0.00 27.52 2.83
763 790 1.152830 ACTGGGCCAACGGACAAAT 59.847 52.632 8.04 0.00 27.52 2.32
764 791 0.402504 ACTGGGCCAACGGACAAATA 59.597 50.000 8.04 0.00 27.52 1.40
765 792 1.005450 ACTGGGCCAACGGACAAATAT 59.995 47.619 8.04 0.00 27.52 1.28
766 793 1.405105 CTGGGCCAACGGACAAATATG 59.595 52.381 8.04 0.00 27.52 1.78
767 794 1.004862 TGGGCCAACGGACAAATATGA 59.995 47.619 2.13 0.00 27.52 2.15
813 840 2.091333 AGGTCCACCAAGGTCAATTGTT 60.091 45.455 5.13 0.00 38.89 2.83
815 842 3.243737 GGTCCACCAAGGTCAATTGTTTC 60.244 47.826 5.13 0.00 39.02 2.78
820 847 5.523552 CCACCAAGGTCAATTGTTTCTTTTC 59.476 40.000 5.13 0.00 0.00 2.29
822 849 5.425217 ACCAAGGTCAATTGTTTCTTTTCCT 59.575 36.000 5.13 0.08 0.00 3.36
823 850 5.754890 CCAAGGTCAATTGTTTCTTTTCCTG 59.245 40.000 5.13 0.00 0.00 3.86
824 851 4.948847 AGGTCAATTGTTTCTTTTCCTGC 58.051 39.130 5.13 0.00 0.00 4.85
825 852 4.405358 AGGTCAATTGTTTCTTTTCCTGCA 59.595 37.500 5.13 0.00 0.00 4.41
843 872 4.609947 CTGCAAGGCAATATATTTCGCAA 58.390 39.130 9.31 0.00 38.41 4.85
852 881 7.222611 AGGCAATATATTTCGCAATTTTGTCAC 59.777 33.333 9.31 0.00 0.00 3.67
853 882 7.222611 GGCAATATATTTCGCAATTTTGTCACT 59.777 33.333 9.31 0.00 0.00 3.41
902 934 3.430473 CCCCCTACAACAGCAACAA 57.570 52.632 0.00 0.00 0.00 2.83
903 935 1.698506 CCCCCTACAACAGCAACAAA 58.301 50.000 0.00 0.00 0.00 2.83
904 936 1.339929 CCCCCTACAACAGCAACAAAC 59.660 52.381 0.00 0.00 0.00 2.93
905 937 1.339929 CCCCTACAACAGCAACAAACC 59.660 52.381 0.00 0.00 0.00 3.27
906 938 1.339929 CCCTACAACAGCAACAAACCC 59.660 52.381 0.00 0.00 0.00 4.11
907 939 1.339929 CCTACAACAGCAACAAACCCC 59.660 52.381 0.00 0.00 0.00 4.95
908 940 1.339929 CTACAACAGCAACAAACCCCC 59.660 52.381 0.00 0.00 0.00 5.40
909 941 1.067250 CAACAGCAACAAACCCCCG 59.933 57.895 0.00 0.00 0.00 5.73
954 986 4.821589 GAAGCGAGCTCCACCCCG 62.822 72.222 8.47 0.00 0.00 5.73
973 1005 4.444838 TCCACGATTCCGCCACCG 62.445 66.667 0.00 0.00 39.95 4.94
1029 1061 3.729489 TCCGCCGTCTCCTCCTCT 61.729 66.667 0.00 0.00 0.00 3.69
1045 1077 3.854669 CTTCGAGGGCGCTGGGAT 61.855 66.667 8.56 0.00 37.46 3.85
1047 1079 4.841617 TCGAGGGCGCTGGGATCT 62.842 66.667 8.56 0.00 37.46 2.75
1059 1091 2.278013 GGATCTCACCGCGACGTC 60.278 66.667 8.23 5.18 0.00 4.34
1071 1103 4.603946 GACGTCCCCGCCCATAGC 62.604 72.222 3.51 0.00 37.70 2.97
1100 1132 0.103937 GAGGCATTCTCCTCGTCCTG 59.896 60.000 0.00 0.00 42.74 3.86
1302 1334 2.742372 GACAACCGGCAGCGACAT 60.742 61.111 0.00 0.00 0.00 3.06
1364 1396 3.060602 GCTAATCTCGTAGCATTGGTCC 58.939 50.000 0.00 0.00 44.94 4.46
1422 1455 0.250234 GACTATGGTGCTGACCTGCA 59.750 55.000 0.00 0.00 43.58 4.41
1442 1488 3.016736 CAGCGTTGGGAGTATTTGGAAT 58.983 45.455 0.00 0.00 0.00 3.01
1475 1521 0.889186 GCGAGGGTTTTGCCAGAGAA 60.889 55.000 0.00 0.00 39.65 2.87
1476 1522 1.826385 CGAGGGTTTTGCCAGAGAAT 58.174 50.000 0.00 0.00 39.65 2.40
1477 1523 2.939640 GCGAGGGTTTTGCCAGAGAATA 60.940 50.000 0.00 0.00 39.65 1.75
1479 1525 3.127030 CGAGGGTTTTGCCAGAGAATAAC 59.873 47.826 0.00 0.00 39.65 1.89
1480 1526 4.336280 GAGGGTTTTGCCAGAGAATAACT 58.664 43.478 0.00 0.00 39.65 2.24
1482 1528 6.079712 AGGGTTTTGCCAGAGAATAACTAT 57.920 37.500 0.00 0.00 39.65 2.12
1537 1606 3.255642 GCTGGTCCTTTGCACTATTTCAA 59.744 43.478 0.00 0.00 0.00 2.69
1542 1611 5.639082 GGTCCTTTGCACTATTTCAATTTGG 59.361 40.000 0.00 0.00 0.00 3.28
1543 1612 5.120674 GTCCTTTGCACTATTTCAATTTGGC 59.879 40.000 0.00 0.00 0.00 4.52
1557 1626 2.810439 TTTGGCGCTTGTAGCATTTT 57.190 40.000 7.64 0.00 42.58 1.82
1604 1673 8.164153 CGCAAATTGATTTTGAATTACTTCTGG 58.836 33.333 0.00 0.00 46.36 3.86
1611 1680 7.340232 TGATTTTGAATTACTTCTGGATCCTGG 59.660 37.037 17.73 8.65 32.29 4.45
1631 1700 5.186797 CCTGGTAAATTGCATACAAGGGAAA 59.813 40.000 10.51 0.00 39.76 3.13
1647 1716 5.183014 AGGGAAAGAAGCTTTGTTTTACG 57.817 39.130 0.00 0.00 0.00 3.18
1654 1723 3.243226 AGCTTTGTTTTACGCGTGTAC 57.757 42.857 24.59 16.77 0.00 2.90
1706 1775 0.534412 AGTGTCTCCGCTTCATCCAG 59.466 55.000 0.00 0.00 0.00 3.86
1733 1802 9.632969 CATTGTTACTTTGCACTATCGTATAAC 57.367 33.333 0.00 0.00 0.00 1.89
1734 1803 8.760103 TTGTTACTTTGCACTATCGTATAACA 57.240 30.769 0.00 0.00 0.00 2.41
1822 1892 3.445096 GGGATGACCTGGTTGAATTTGAG 59.555 47.826 0.00 0.00 35.85 3.02
1830 1900 4.279169 CCTGGTTGAATTTGAGAGCAAAGA 59.721 41.667 0.00 0.00 46.27 2.52
1855 1929 3.384789 GGCTCCATTATTTCCAGGTTTCC 59.615 47.826 0.00 0.00 0.00 3.13
1916 2002 5.131142 GTGATATTTCCTCTTCTTCCCAGGA 59.869 44.000 0.00 0.00 34.31 3.86
2066 2189 6.820335 TGGATGTCCTAATGATTGTACAGAG 58.180 40.000 0.00 0.00 36.82 3.35
2159 2282 1.337823 TGCTTGCTTCCGAAGTCCTAC 60.338 52.381 9.87 0.00 0.00 3.18
2348 2471 7.377398 TCCTGTTTGATGGTAAAATCACATTG 58.623 34.615 0.00 0.00 36.31 2.82
2398 2530 5.245531 AGATAACCGTGCAATCTCAAGAAA 58.754 37.500 0.00 0.00 0.00 2.52
2538 2676 4.271049 GGCCTTTTCTCTTTTTGCTTGTTC 59.729 41.667 0.00 0.00 0.00 3.18
2554 2692 1.094785 GTTCGTGCAGCCATACCAAT 58.905 50.000 0.00 0.00 0.00 3.16
2564 2702 4.379813 GCAGCCATACCAATGATTATTCCG 60.380 45.833 0.00 0.00 34.84 4.30
2586 2739 0.636101 TTAATGGATTGGCCTGGGCT 59.364 50.000 21.72 1.07 41.60 5.19
2623 3013 4.887748 ACCACTTATTCTATGGCGATCAG 58.112 43.478 0.00 0.00 36.96 2.90
2704 3094 6.348295 GGCTGATATGTTGATGCTTCATAGTG 60.348 42.308 2.75 0.00 0.00 2.74
2706 3096 6.594744 TGATATGTTGATGCTTCATAGTGGT 58.405 36.000 2.75 0.00 0.00 4.16
2784 3175 8.755977 ACTGAATGAGGCTCATTAAATTCATTT 58.244 29.630 35.66 19.34 46.20 2.32
2866 3267 4.142071 TGCCAGCACTTATTTTGTGTGAAA 60.142 37.500 0.00 0.00 37.70 2.69
2908 3309 2.489938 TGCATGTGAAGGAAGGTACC 57.510 50.000 2.73 2.73 0.00 3.34
2968 3369 6.057533 TGCTTCTATTCCACCATATCTGTTG 58.942 40.000 0.00 0.00 0.00 3.33
3224 3625 7.322664 CAAACAGGTAAAATATCAGCATTGGT 58.677 34.615 0.00 0.00 0.00 3.67
3433 3835 9.807386 GTTACTTATCAACTGTTGACATGTTAC 57.193 33.333 24.17 19.30 43.48 2.50
3440 3842 8.445275 TCAACTGTTGACATGTTACTAAACAT 57.555 30.769 18.69 0.00 44.44 2.71
3681 4083 7.512058 ACTGGATATGATCATTTCAGGTAGACT 59.488 37.037 22.54 6.82 37.89 3.24
3728 4130 5.982890 TCTTTAAAAGCAAGGGAATCCAG 57.017 39.130 0.09 0.00 34.83 3.86
3747 4149 3.474600 CAGTCAGGATCATGGGCTTAAG 58.525 50.000 7.64 0.00 0.00 1.85
3757 4159 8.325046 AGGATCATGGGCTTAAGTATCTTTATC 58.675 37.037 4.02 0.76 0.00 1.75
3772 4174 9.857656 AGTATCTTTATCCATGTGTGATTTGAT 57.142 29.630 0.00 0.00 0.00 2.57
3844 4246 0.110688 CGCCTGTTGACAATGACACG 60.111 55.000 0.00 0.00 0.00 4.49
3861 4263 4.314440 GACGGTGTGGCAGAGGCA 62.314 66.667 0.00 0.00 43.71 4.75
3993 4395 4.351874 AACCTGTCTTTCGAATCTGGAA 57.648 40.909 19.73 0.00 0.00 3.53
4001 4403 6.758416 TGTCTTTCGAATCTGGAATATGACAG 59.242 38.462 0.00 1.46 36.07 3.51
4022 4424 0.994247 AGTGGCATCCATTCTGGTCA 59.006 50.000 0.00 0.00 39.03 4.02
4039 4441 0.106918 TCAGTTTCGCAAGGGTGGTT 60.107 50.000 0.00 0.00 38.47 3.67
4048 4450 2.084546 GCAAGGGTGGTTACTGATGAC 58.915 52.381 0.00 0.00 0.00 3.06
4049 4451 2.290323 GCAAGGGTGGTTACTGATGACT 60.290 50.000 0.00 0.00 0.00 3.41
4081 4483 6.442952 ACATCGTCAGTTTATCTCTCTATGC 58.557 40.000 0.00 0.00 0.00 3.14
4164 4566 1.409064 CCGAGCTAGCTATTCCACACA 59.591 52.381 19.38 0.00 0.00 3.72
4180 4582 3.052082 CAGTCCAAGCAGCACGGG 61.052 66.667 0.00 0.00 0.00 5.28
4295 4697 2.033151 GTGCTACCGTTGTCACAGTTTC 60.033 50.000 0.00 0.00 0.00 2.78
4313 4720 1.444212 CGCAGGATTTTGCCGTTGG 60.444 57.895 0.00 0.00 41.01 3.77
4352 4759 6.263344 TCTGACGTTATGTGTAGCTGAATAC 58.737 40.000 0.00 0.00 0.00 1.89
4429 4836 6.579666 TGGAGAAACCAGAATGAGAAATTG 57.420 37.500 0.00 0.00 44.64 2.32
4439 4846 1.368641 TGAGAAATTGCCGATCGGTG 58.631 50.000 33.33 11.51 37.65 4.94
4446 4853 1.717194 TTGCCGATCGGTGTTTCTAC 58.283 50.000 33.33 15.69 37.65 2.59
4475 4882 4.686091 TCAACAAAAGCTCGTGTATCTCAG 59.314 41.667 2.87 0.00 0.00 3.35
4476 4883 2.996621 ACAAAAGCTCGTGTATCTCAGC 59.003 45.455 0.51 0.00 0.00 4.26
4478 4885 0.811915 AAGCTCGTGTATCTCAGCGT 59.188 50.000 0.00 0.00 0.00 5.07
4480 4887 1.475441 GCTCGTGTATCTCAGCGTGC 61.475 60.000 0.00 0.00 35.24 5.34
4481 4888 0.867753 CTCGTGTATCTCAGCGTGCC 60.868 60.000 0.00 0.00 0.00 5.01
4497 4906 2.523902 CCCAGGGCCTTTTGTGCA 60.524 61.111 1.32 0.00 0.00 4.57
4517 4926 5.858049 GTGCACACAGTTAACGTACAGTATA 59.142 40.000 13.17 0.00 0.00 1.47
4520 4929 8.407832 TGCACACAGTTAACGTACAGTATATAT 58.592 33.333 0.00 0.00 0.00 0.86
4521 4930 8.688184 GCACACAGTTAACGTACAGTATATATG 58.312 37.037 0.00 0.00 0.00 1.78
4522 4931 8.688184 CACACAGTTAACGTACAGTATATATGC 58.312 37.037 0.00 0.00 0.00 3.14
4524 4933 9.240159 CACAGTTAACGTACAGTATATATGCAA 57.760 33.333 3.52 0.00 0.00 4.08
4547 4957 6.823678 ATAATTCTGTAAAGTTACGGCTCG 57.176 37.500 5.32 0.00 39.36 5.03
4626 5036 6.516739 TTCAGTTTGTTGGACATAAACACA 57.483 33.333 12.23 0.00 37.26 3.72
4632 5042 4.930963 TGTTGGACATAAACACAAGCAAG 58.069 39.130 0.00 0.00 32.71 4.01
4635 5047 5.940192 TGGACATAAACACAAGCAAGTAG 57.060 39.130 0.00 0.00 0.00 2.57
4640 5052 9.158233 GGACATAAACACAAGCAAGTAGTATAA 57.842 33.333 0.00 0.00 0.00 0.98
4666 5078 0.974383 ACAACCAAGTACTCCCTCCG 59.026 55.000 0.00 0.00 0.00 4.63
4667 5079 0.974383 CAACCAAGTACTCCCTCCGT 59.026 55.000 0.00 0.00 0.00 4.69
4669 5081 2.564062 CAACCAAGTACTCCCTCCGTAA 59.436 50.000 0.00 0.00 0.00 3.18
4670 5082 2.893424 ACCAAGTACTCCCTCCGTAAA 58.107 47.619 0.00 0.00 0.00 2.01
4673 5085 4.019174 CCAAGTACTCCCTCCGTAAACTA 58.981 47.826 0.00 0.00 0.00 2.24
4674 5086 4.463891 CCAAGTACTCCCTCCGTAAACTAA 59.536 45.833 0.00 0.00 0.00 2.24
4676 5088 6.322201 CCAAGTACTCCCTCCGTAAACTAATA 59.678 42.308 0.00 0.00 0.00 0.98
4677 5089 7.015001 CCAAGTACTCCCTCCGTAAACTAATAT 59.985 40.741 0.00 0.00 0.00 1.28
4678 5090 9.071276 CAAGTACTCCCTCCGTAAACTAATATA 57.929 37.037 0.00 0.00 0.00 0.86
4680 5092 9.294614 AGTACTCCCTCCGTAAACTAATATAAG 57.705 37.037 0.00 0.00 0.00 1.73
4682 5094 8.406730 ACTCCCTCCGTAAACTAATATAAGAG 57.593 38.462 0.00 0.00 0.00 2.85
4683 5095 7.039853 ACTCCCTCCGTAAACTAATATAAGAGC 60.040 40.741 0.00 0.00 0.00 4.09
4684 5096 6.779049 TCCCTCCGTAAACTAATATAAGAGCA 59.221 38.462 0.00 0.00 0.00 4.26
4685 5097 7.453752 TCCCTCCGTAAACTAATATAAGAGCAT 59.546 37.037 0.00 0.00 0.00 3.79
4686 5098 8.095169 CCCTCCGTAAACTAATATAAGAGCATT 58.905 37.037 0.00 0.00 0.00 3.56
4687 5099 9.490379 CCTCCGTAAACTAATATAAGAGCATTT 57.510 33.333 0.00 0.00 0.00 2.32
4715 5127 9.250624 GATCATTACTTTAGTGATCTAAACGCT 57.749 33.333 10.06 0.00 44.08 5.07
4716 5128 8.630278 TCATTACTTTAGTGATCTAAACGCTC 57.370 34.615 0.00 0.00 40.05 5.03
4717 5129 8.467598 TCATTACTTTAGTGATCTAAACGCTCT 58.532 33.333 0.00 0.00 40.05 4.09
4718 5130 9.088512 CATTACTTTAGTGATCTAAACGCTCTT 57.911 33.333 0.00 0.00 40.05 2.85
4735 5147 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
4736 5148 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
4737 5149 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
4738 5150 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
4739 5151 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
4747 5159 8.890410 TTAGTTTACAGAGGGAGTACTACATT 57.110 34.615 7.57 0.00 0.00 2.71
4748 5160 9.979897 TTAGTTTACAGAGGGAGTACTACATTA 57.020 33.333 7.57 0.00 0.00 1.90
4749 5161 8.291191 AGTTTACAGAGGGAGTACTACATTAC 57.709 38.462 7.57 0.00 0.00 1.89
4750 5162 8.114743 AGTTTACAGAGGGAGTACTACATTACT 58.885 37.037 7.57 0.00 34.86 2.24
4751 5163 9.401058 GTTTACAGAGGGAGTACTACATTACTA 57.599 37.037 7.57 0.00 32.17 1.82
4752 5164 9.979897 TTTACAGAGGGAGTACTACATTACTAA 57.020 33.333 7.57 0.00 32.17 2.24
4754 5166 8.466617 ACAGAGGGAGTACTACATTACTAATG 57.533 38.462 7.57 7.17 44.48 1.90
4755 5167 7.014422 ACAGAGGGAGTACTACATTACTAATGC 59.986 40.741 7.57 0.00 42.69 3.56
4756 5168 7.231722 CAGAGGGAGTACTACATTACTAATGCT 59.768 40.741 7.57 0.00 42.69 3.79
4757 5169 7.785506 AGAGGGAGTACTACATTACTAATGCTT 59.214 37.037 7.57 0.00 42.69 3.91
4758 5170 7.953752 AGGGAGTACTACATTACTAATGCTTC 58.046 38.462 7.57 0.00 42.69 3.86
4759 5171 7.785506 AGGGAGTACTACATTACTAATGCTTCT 59.214 37.037 7.57 1.94 42.69 2.85
4760 5172 8.083462 GGGAGTACTACATTACTAATGCTTCTC 58.917 40.741 7.57 8.97 42.69 2.87
4761 5173 8.852135 GGAGTACTACATTACTAATGCTTCTCT 58.148 37.037 0.00 3.38 42.69 3.10
4774 5186 9.654663 ACTAATGCTTCTCTAAATAAACTTCGT 57.345 29.630 0.00 0.00 0.00 3.85
4776 5188 8.547967 AATGCTTCTCTAAATAAACTTCGTCA 57.452 30.769 0.00 0.00 0.00 4.35
4777 5189 8.723942 ATGCTTCTCTAAATAAACTTCGTCAT 57.276 30.769 0.00 0.00 0.00 3.06
4778 5190 9.817809 ATGCTTCTCTAAATAAACTTCGTCATA 57.182 29.630 0.00 0.00 0.00 2.15
4779 5191 9.647797 TGCTTCTCTAAATAAACTTCGTCATAA 57.352 29.630 0.00 0.00 0.00 1.90
4823 5235 3.030291 TCTTTTGAAGAAAAGGCAGGCA 58.970 40.909 7.29 0.00 45.64 4.75
4844 5256 3.754850 CACTCTGCCATTCAGTTTGATGA 59.245 43.478 0.00 0.00 43.32 2.92
4893 5309 4.589216 CCTCAAAGAGGCATTGTTTTCA 57.411 40.909 0.00 0.00 43.29 2.69
4909 5325 5.250200 TGTTTTCAATAGAACCGGCACTAT 58.750 37.500 0.00 8.33 32.39 2.12
4926 5342 1.683917 CTATTGGAGTCTCCTGGGTCG 59.316 57.143 19.82 0.49 37.46 4.79
4928 5344 1.185618 TTGGAGTCTCCTGGGTCGTG 61.186 60.000 19.82 0.00 37.46 4.35
4942 5358 1.335689 GGTCGTGTGAGAAAGCGTACT 60.336 52.381 0.00 0.00 0.00 2.73
4951 5367 6.090898 GTGTGAGAAAGCGTACTGTGATAAAT 59.909 38.462 0.00 0.00 0.00 1.40
4961 5377 5.232202 CGTACTGTGATAAATCTCACGCATT 59.768 40.000 0.00 0.00 46.89 3.56
4977 5393 2.983136 CGCATTAAACGACCATTTTGCA 59.017 40.909 0.00 0.00 0.00 4.08
4978 5394 3.611986 CGCATTAAACGACCATTTTGCAT 59.388 39.130 0.00 0.00 0.00 3.96
4979 5395 4.490639 CGCATTAAACGACCATTTTGCATG 60.491 41.667 0.00 0.00 0.00 4.06
4980 5396 4.724602 GCATTAAACGACCATTTTGCATGC 60.725 41.667 11.82 11.82 31.84 4.06
4981 5397 2.818130 AAACGACCATTTTGCATGCT 57.182 40.000 20.33 0.00 0.00 3.79
4982 5398 2.352503 AACGACCATTTTGCATGCTC 57.647 45.000 20.33 4.97 0.00 4.26
4983 5399 1.246649 ACGACCATTTTGCATGCTCA 58.753 45.000 20.33 2.20 0.00 4.26
4984 5400 1.820519 ACGACCATTTTGCATGCTCAT 59.179 42.857 20.33 5.12 0.00 2.90
4985 5401 2.190161 CGACCATTTTGCATGCTCATG 58.810 47.619 20.33 16.52 41.60 3.07
4986 5402 2.159352 CGACCATTTTGCATGCTCATGA 60.159 45.455 20.33 0.00 41.20 3.07
4987 5403 3.673866 CGACCATTTTGCATGCTCATGAA 60.674 43.478 20.33 0.58 41.20 2.57
4988 5404 4.439057 GACCATTTTGCATGCTCATGAAT 58.561 39.130 20.33 8.69 41.20 2.57
4989 5405 4.839121 ACCATTTTGCATGCTCATGAATT 58.161 34.783 20.33 3.85 41.20 2.17
4990 5406 5.250200 ACCATTTTGCATGCTCATGAATTT 58.750 33.333 20.33 1.70 41.20 1.82
4991 5407 5.708230 ACCATTTTGCATGCTCATGAATTTT 59.292 32.000 20.33 0.00 41.20 1.82
4992 5408 6.879993 ACCATTTTGCATGCTCATGAATTTTA 59.120 30.769 20.33 0.00 41.20 1.52
4993 5409 7.390996 ACCATTTTGCATGCTCATGAATTTTAA 59.609 29.630 20.33 0.00 41.20 1.52
4994 5410 8.237949 CCATTTTGCATGCTCATGAATTTTAAA 58.762 29.630 20.33 3.27 41.20 1.52
4995 5411 9.613957 CATTTTGCATGCTCATGAATTTTAAAA 57.386 25.926 20.33 12.22 41.20 1.52
4997 5413 9.666626 TTTTGCATGCTCATGAATTTTAAAAAG 57.333 25.926 20.33 0.00 41.20 2.27
4998 5414 7.966246 TGCATGCTCATGAATTTTAAAAAGT 57.034 28.000 20.33 0.00 41.20 2.66
4999 5415 7.798801 TGCATGCTCATGAATTTTAAAAAGTG 58.201 30.769 20.33 2.43 41.20 3.16
5000 5416 7.441760 TGCATGCTCATGAATTTTAAAAAGTGT 59.558 29.630 20.33 0.00 41.20 3.55
5001 5417 8.284693 GCATGCTCATGAATTTTAAAAAGTGTT 58.715 29.630 11.37 0.00 41.20 3.32
5002 5418 9.801714 CATGCTCATGAATTTTAAAAAGTGTTC 57.198 29.630 4.44 5.05 41.20 3.18
5003 5419 8.939201 TGCTCATGAATTTTAAAAAGTGTTCA 57.061 26.923 14.04 14.04 0.00 3.18
5004 5420 8.816144 TGCTCATGAATTTTAAAAAGTGTTCAC 58.184 29.630 13.99 5.60 0.00 3.18
5005 5421 8.816144 GCTCATGAATTTTAAAAAGTGTTCACA 58.184 29.630 13.99 6.25 0.00 3.58
5021 5437 9.824534 AAGTGTTCACAAATTTGAAATTTGTTC 57.175 25.926 34.00 27.14 46.45 3.18
5022 5438 9.218440 AGTGTTCACAAATTTGAAATTTGTTCT 57.782 25.926 34.00 24.80 46.45 3.01
5023 5439 9.824534 GTGTTCACAAATTTGAAATTTGTTCTT 57.175 25.926 34.00 18.15 46.45 2.52
5024 5440 9.823098 TGTTCACAAATTTGAAATTTGTTCTTG 57.177 25.926 34.00 25.62 46.45 3.02
5134 5550 9.469807 AATTTGTGACTTAATAAAATGTTCGCA 57.530 25.926 0.00 0.00 0.00 5.10
5135 5551 8.858003 TTTGTGACTTAATAAAATGTTCGCAA 57.142 26.923 0.00 0.00 0.00 4.85
5136 5552 8.858003 TTGTGACTTAATAAAATGTTCGCAAA 57.142 26.923 0.00 0.00 0.00 3.68
5137 5553 8.858003 TGTGACTTAATAAAATGTTCGCAAAA 57.142 26.923 0.00 0.00 0.00 2.44
5138 5554 9.302345 TGTGACTTAATAAAATGTTCGCAAAAA 57.698 25.926 0.00 0.00 0.00 1.94
5151 5567 7.917720 TGTTCGCAAAAATAAAAACTACTCC 57.082 32.000 0.00 0.00 0.00 3.85
5152 5568 6.919115 TGTTCGCAAAAATAAAAACTACTCCC 59.081 34.615 0.00 0.00 0.00 4.30
5153 5569 6.887626 TCGCAAAAATAAAAACTACTCCCT 57.112 33.333 0.00 0.00 0.00 4.20
5154 5570 6.905578 TCGCAAAAATAAAAACTACTCCCTC 58.094 36.000 0.00 0.00 0.00 4.30
5155 5571 6.713450 TCGCAAAAATAAAAACTACTCCCTCT 59.287 34.615 0.00 0.00 0.00 3.69
5156 5572 6.801862 CGCAAAAATAAAAACTACTCCCTCTG 59.198 38.462 0.00 0.00 0.00 3.35
5157 5573 7.521585 CGCAAAAATAAAAACTACTCCCTCTGT 60.522 37.037 0.00 0.00 0.00 3.41
5158 5574 7.808381 GCAAAAATAAAAACTACTCCCTCTGTC 59.192 37.037 0.00 0.00 0.00 3.51
5159 5575 7.997773 AAAATAAAAACTACTCCCTCTGTCC 57.002 36.000 0.00 0.00 0.00 4.02
5160 5576 5.695424 ATAAAAACTACTCCCTCTGTCCC 57.305 43.478 0.00 0.00 0.00 4.46
5161 5577 2.715763 AAACTACTCCCTCTGTCCCA 57.284 50.000 0.00 0.00 0.00 4.37
5162 5578 2.950990 AACTACTCCCTCTGTCCCAT 57.049 50.000 0.00 0.00 0.00 4.00
5163 5579 4.348020 AAACTACTCCCTCTGTCCCATA 57.652 45.455 0.00 0.00 0.00 2.74
5164 5580 4.348020 AACTACTCCCTCTGTCCCATAA 57.652 45.455 0.00 0.00 0.00 1.90
5165 5581 4.561254 ACTACTCCCTCTGTCCCATAAT 57.439 45.455 0.00 0.00 0.00 1.28
5166 5582 4.227197 ACTACTCCCTCTGTCCCATAATG 58.773 47.826 0.00 0.00 0.00 1.90
5167 5583 3.136641 ACTCCCTCTGTCCCATAATGT 57.863 47.619 0.00 0.00 0.00 2.71
5168 5584 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
5169 5585 4.631234 ACTCCCTCTGTCCCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
5170 5586 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
5171 5587 4.890988 TCCCTCTGTCCCATAATGTAAGA 58.109 43.478 0.00 0.00 0.00 2.10
5172 5588 4.654262 TCCCTCTGTCCCATAATGTAAGAC 59.346 45.833 0.00 0.00 0.00 3.01
5173 5589 4.408921 CCCTCTGTCCCATAATGTAAGACA 59.591 45.833 0.00 0.00 36.16 3.41
5174 5590 5.072329 CCCTCTGTCCCATAATGTAAGACAT 59.928 44.000 0.00 0.00 41.31 3.06
5176 5592 7.056635 CCTCTGTCCCATAATGTAAGACATTT 58.943 38.462 9.92 0.00 45.80 2.32
5177 5593 7.557719 CCTCTGTCCCATAATGTAAGACATTTT 59.442 37.037 9.92 0.33 45.80 1.82
5178 5594 8.877864 TCTGTCCCATAATGTAAGACATTTTT 57.122 30.769 9.92 0.00 45.80 1.94
5179 5595 8.739039 TCTGTCCCATAATGTAAGACATTTTTG 58.261 33.333 9.92 8.46 45.80 2.44
5180 5596 7.835822 TGTCCCATAATGTAAGACATTTTTGG 58.164 34.615 18.23 18.23 45.80 3.28
5181 5597 7.671819 TGTCCCATAATGTAAGACATTTTTGGA 59.328 33.333 22.79 16.89 45.80 3.53
5182 5598 8.527810 GTCCCATAATGTAAGACATTTTTGGAA 58.472 33.333 22.79 10.22 45.80 3.53
5183 5599 8.748412 TCCCATAATGTAAGACATTTTTGGAAG 58.252 33.333 22.79 13.87 45.80 3.46
5184 5600 7.492344 CCCATAATGTAAGACATTTTTGGAAGC 59.508 37.037 22.79 0.00 45.80 3.86
5185 5601 8.253113 CCATAATGTAAGACATTTTTGGAAGCT 58.747 33.333 19.41 0.00 45.80 3.74
5189 5605 8.635765 ATGTAAGACATTTTTGGAAGCTAAGA 57.364 30.769 0.00 0.00 34.67 2.10
5190 5606 8.635765 TGTAAGACATTTTTGGAAGCTAAGAT 57.364 30.769 0.00 0.00 0.00 2.40
5191 5607 9.733556 TGTAAGACATTTTTGGAAGCTAAGATA 57.266 29.630 0.00 0.00 0.00 1.98
5207 5623 6.734104 CTAAGATAGCTTGCAAAACTGTCT 57.266 37.500 17.53 17.53 33.86 3.41
5208 5624 7.138692 CTAAGATAGCTTGCAAAACTGTCTT 57.861 36.000 28.38 28.38 42.33 3.01
5209 5625 8.256611 CTAAGATAGCTTGCAAAACTGTCTTA 57.743 34.615 27.89 27.89 40.77 2.10
5210 5626 7.693969 AAGATAGCTTGCAAAACTGTCTTAT 57.306 32.000 26.29 13.20 39.27 1.73
5211 5627 8.792830 AAGATAGCTTGCAAAACTGTCTTATA 57.207 30.769 26.29 4.44 39.27 0.98
5212 5628 8.970859 AGATAGCTTGCAAAACTGTCTTATAT 57.029 30.769 17.53 1.83 28.71 0.86
5213 5629 9.401058 AGATAGCTTGCAAAACTGTCTTATATT 57.599 29.630 17.53 1.80 28.71 1.28
5217 5633 8.408601 AGCTTGCAAAACTGTCTTATATTATGG 58.591 33.333 0.00 0.00 0.00 2.74
5218 5634 7.649306 GCTTGCAAAACTGTCTTATATTATGGG 59.351 37.037 0.00 0.00 0.00 4.00
5219 5635 8.815565 TTGCAAAACTGTCTTATATTATGGGA 57.184 30.769 0.00 0.00 0.00 4.37
5220 5636 8.995027 TGCAAAACTGTCTTATATTATGGGAT 57.005 30.769 0.00 0.00 0.00 3.85
5221 5637 8.849168 TGCAAAACTGTCTTATATTATGGGATG 58.151 33.333 0.00 0.00 0.00 3.51
5222 5638 8.299570 GCAAAACTGTCTTATATTATGGGATGG 58.700 37.037 0.00 0.00 0.00 3.51
5223 5639 9.573166 CAAAACTGTCTTATATTATGGGATGGA 57.427 33.333 0.00 0.00 0.00 3.41
5224 5640 9.799106 AAAACTGTCTTATATTATGGGATGGAG 57.201 33.333 0.00 0.00 0.00 3.86
5225 5641 7.502060 ACTGTCTTATATTATGGGATGGAGG 57.498 40.000 0.00 0.00 0.00 4.30
5226 5642 6.445139 ACTGTCTTATATTATGGGATGGAGGG 59.555 42.308 0.00 0.00 0.00 4.30
5227 5643 6.580167 TGTCTTATATTATGGGATGGAGGGA 58.420 40.000 0.00 0.00 0.00 4.20
5228 5644 6.443849 TGTCTTATATTATGGGATGGAGGGAC 59.556 42.308 0.00 0.00 0.00 4.46
5230 5646 7.844779 GTCTTATATTATGGGATGGAGGGACTA 59.155 40.741 0.00 0.00 41.55 2.59
5231 5647 8.587244 TCTTATATTATGGGATGGAGGGACTAT 58.413 37.037 0.00 0.00 41.55 2.12
5232 5648 9.230477 CTTATATTATGGGATGGAGGGACTATT 57.770 37.037 0.00 0.00 41.55 1.73
5233 5649 7.698163 ATATTATGGGATGGAGGGACTATTC 57.302 40.000 0.00 0.00 41.55 1.75
5234 5650 2.118403 TGGGATGGAGGGACTATTCC 57.882 55.000 0.00 0.00 41.55 3.01
5235 5651 1.585592 TGGGATGGAGGGACTATTCCT 59.414 52.381 0.00 0.00 41.55 3.36
5236 5652 1.981495 GGGATGGAGGGACTATTCCTG 59.019 57.143 0.00 0.00 41.55 3.86
5237 5653 2.427889 GGGATGGAGGGACTATTCCTGA 60.428 54.545 0.00 0.00 41.55 3.86
5238 5654 3.318313 GGATGGAGGGACTATTCCTGAA 58.682 50.000 0.00 0.00 41.55 3.02
5239 5655 3.913163 GGATGGAGGGACTATTCCTGAAT 59.087 47.826 0.00 0.00 41.55 2.57
5240 5656 4.352298 GGATGGAGGGACTATTCCTGAATT 59.648 45.833 0.00 0.00 41.55 2.17
5241 5657 5.163045 GGATGGAGGGACTATTCCTGAATTT 60.163 44.000 0.00 0.00 41.55 1.82
5242 5658 5.796502 TGGAGGGACTATTCCTGAATTTT 57.203 39.130 0.00 0.00 41.55 1.82
5243 5659 6.901615 TGGAGGGACTATTCCTGAATTTTA 57.098 37.500 0.00 0.00 41.55 1.52
5244 5660 6.659824 TGGAGGGACTATTCCTGAATTTTAC 58.340 40.000 0.00 0.00 41.55 2.01
5245 5661 6.447084 TGGAGGGACTATTCCTGAATTTTACT 59.553 38.462 0.00 0.00 41.55 2.24
5246 5662 7.626084 TGGAGGGACTATTCCTGAATTTTACTA 59.374 37.037 0.00 0.00 41.55 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 4.832608 CCCGGCCGTAGCTTGTCC 62.833 72.222 26.12 0.00 39.73 4.02
40 41 1.299620 CAATACGACCCGGCCGTAG 60.300 63.158 26.12 17.81 44.27 3.51
104 105 0.318441 CCAGAGCACTTCGAGTCCAA 59.682 55.000 0.00 0.00 0.00 3.53
111 112 1.801178 GTTTCTTCCCAGAGCACTTCG 59.199 52.381 0.00 0.00 0.00 3.79
113 114 3.904339 TCTAGTTTCTTCCCAGAGCACTT 59.096 43.478 0.00 0.00 30.47 3.16
121 122 3.836562 GGTGGTACTCTAGTTTCTTCCCA 59.163 47.826 0.00 0.00 0.00 4.37
143 144 8.341892 TCATATAGATAGACAAGTAGGCAGTG 57.658 38.462 0.00 0.00 0.00 3.66
163 164 9.799106 AAGCAGCTTACATAGGTTTTATCATAT 57.201 29.630 5.62 0.00 30.51 1.78
164 165 9.273016 GAAGCAGCTTACATAGGTTTTATCATA 57.727 33.333 7.92 0.00 30.51 2.15
165 166 7.041780 CGAAGCAGCTTACATAGGTTTTATCAT 60.042 37.037 7.92 0.00 30.51 2.45
175 176 3.000674 CGACAACGAAGCAGCTTACATAG 60.001 47.826 7.92 0.14 42.66 2.23
190 191 1.705337 GCCATGGTCCATCGACAACG 61.705 60.000 14.67 0.00 41.13 4.10
204 205 1.399440 CACGTGAGATTTGGAGCCATG 59.601 52.381 10.90 0.00 0.00 3.66
210 211 1.001974 CTCCACCACGTGAGATTTGGA 59.998 52.381 19.30 17.55 35.23 3.53
241 242 0.232303 GCGGAATATTCAACGAGGCG 59.768 55.000 17.07 10.09 0.00 5.52
249 250 1.116308 TGAGGGACGCGGAATATTCA 58.884 50.000 17.07 3.53 0.00 2.57
262 263 2.327325 ACTTGAGCTTAGGTGAGGGA 57.673 50.000 0.00 0.00 0.00 4.20
277 278 6.600350 GCTATGCTTGATGATGATGTACTTG 58.400 40.000 0.00 0.00 0.00 3.16
285 286 2.243602 TGCGCTATGCTTGATGATGA 57.756 45.000 9.73 0.00 46.63 2.92
305 332 1.021968 GACGAAACAAGGGTTGCTGT 58.978 50.000 0.00 0.00 37.30 4.40
317 344 2.344025 GGTACCAGTGGATGACGAAAC 58.656 52.381 18.40 0.66 0.00 2.78
321 348 1.141019 CCGGTACCAGTGGATGACG 59.859 63.158 18.40 13.97 0.00 4.35
331 358 2.432444 CATTTTCTTGCTCCGGTACCA 58.568 47.619 13.54 0.00 0.00 3.25
333 360 1.743394 CCCATTTTCTTGCTCCGGTAC 59.257 52.381 0.00 0.00 0.00 3.34
357 384 3.633986 GCATCTAGCATTGTAAAAGGCCT 59.366 43.478 0.00 0.00 44.79 5.19
358 385 3.969899 GCATCTAGCATTGTAAAAGGCC 58.030 45.455 0.00 0.00 44.79 5.19
396 423 9.487790 TGCTTCAGAAAAATCGGATTTATTTTT 57.512 25.926 15.80 7.78 44.88 1.94
397 424 9.657419 ATGCTTCAGAAAAATCGGATTTATTTT 57.343 25.926 15.80 7.39 37.98 1.82
398 425 9.305925 GATGCTTCAGAAAAATCGGATTTATTT 57.694 29.630 15.80 8.06 0.00 1.40
399 426 8.469200 TGATGCTTCAGAAAAATCGGATTTATT 58.531 29.630 15.80 11.93 0.00 1.40
400 427 7.999679 TGATGCTTCAGAAAAATCGGATTTAT 58.000 30.769 15.80 3.28 0.00 1.40
401 428 7.389803 TGATGCTTCAGAAAAATCGGATTTA 57.610 32.000 15.80 0.00 0.00 1.40
402 429 6.271488 TGATGCTTCAGAAAAATCGGATTT 57.729 33.333 10.11 10.11 0.00 2.17
403 430 5.902613 TGATGCTTCAGAAAAATCGGATT 57.097 34.783 0.00 0.00 0.00 3.01
442 469 6.260271 GGATAGATGCTTAGTTAGGCGTTTTT 59.740 38.462 0.00 0.00 0.00 1.94
443 470 5.758784 GGATAGATGCTTAGTTAGGCGTTTT 59.241 40.000 0.00 0.00 0.00 2.43
444 471 5.070580 AGGATAGATGCTTAGTTAGGCGTTT 59.929 40.000 0.00 0.00 0.00 3.60
445 472 4.589374 AGGATAGATGCTTAGTTAGGCGTT 59.411 41.667 0.00 0.00 0.00 4.84
446 473 4.021894 CAGGATAGATGCTTAGTTAGGCGT 60.022 45.833 0.00 0.00 0.00 5.68
447 474 4.021894 ACAGGATAGATGCTTAGTTAGGCG 60.022 45.833 0.00 0.00 0.00 5.52
448 475 5.476091 ACAGGATAGATGCTTAGTTAGGC 57.524 43.478 0.00 0.00 0.00 3.93
449 476 9.832445 TTTTTACAGGATAGATGCTTAGTTAGG 57.168 33.333 0.00 0.00 0.00 2.69
457 484 9.780186 GGTACTTATTTTTACAGGATAGATGCT 57.220 33.333 0.00 0.00 0.00 3.79
458 485 8.709646 CGGTACTTATTTTTACAGGATAGATGC 58.290 37.037 0.00 0.00 0.00 3.91
459 486 9.976511 TCGGTACTTATTTTTACAGGATAGATG 57.023 33.333 0.00 0.00 0.00 2.90
461 488 9.976511 CATCGGTACTTATTTTTACAGGATAGA 57.023 33.333 0.00 0.00 0.00 1.98
462 489 8.709646 GCATCGGTACTTATTTTTACAGGATAG 58.290 37.037 0.00 0.00 0.00 2.08
463 490 8.426489 AGCATCGGTACTTATTTTTACAGGATA 58.574 33.333 0.00 0.00 0.00 2.59
464 491 7.280356 AGCATCGGTACTTATTTTTACAGGAT 58.720 34.615 0.00 0.00 0.00 3.24
465 492 6.646267 AGCATCGGTACTTATTTTTACAGGA 58.354 36.000 0.00 0.00 0.00 3.86
466 493 6.920569 AGCATCGGTACTTATTTTTACAGG 57.079 37.500 0.00 0.00 0.00 4.00
467 494 9.309516 TCTAAGCATCGGTACTTATTTTTACAG 57.690 33.333 0.00 0.00 0.00 2.74
468 495 9.309516 CTCTAAGCATCGGTACTTATTTTTACA 57.690 33.333 0.00 0.00 0.00 2.41
469 496 9.525409 TCTCTAAGCATCGGTACTTATTTTTAC 57.475 33.333 0.00 0.00 0.00 2.01
471 498 9.444600 TTTCTCTAAGCATCGGTACTTATTTTT 57.555 29.630 0.00 0.00 0.00 1.94
472 499 9.099454 CTTTCTCTAAGCATCGGTACTTATTTT 57.901 33.333 0.00 0.00 0.00 1.82
473 500 8.258708 ACTTTCTCTAAGCATCGGTACTTATTT 58.741 33.333 0.00 0.00 37.37 1.40
474 501 7.783042 ACTTTCTCTAAGCATCGGTACTTATT 58.217 34.615 0.00 0.00 37.37 1.40
475 502 7.349412 ACTTTCTCTAAGCATCGGTACTTAT 57.651 36.000 0.00 0.00 37.37 1.73
476 503 6.770746 ACTTTCTCTAAGCATCGGTACTTA 57.229 37.500 0.00 0.00 37.37 2.24
477 504 5.662674 ACTTTCTCTAAGCATCGGTACTT 57.337 39.130 0.00 0.00 37.37 2.24
478 505 5.662674 AACTTTCTCTAAGCATCGGTACT 57.337 39.130 0.00 0.00 37.37 2.73
479 506 6.019720 GCTAAACTTTCTCTAAGCATCGGTAC 60.020 42.308 0.00 0.00 37.37 3.34
480 507 6.040878 GCTAAACTTTCTCTAAGCATCGGTA 58.959 40.000 0.00 0.00 37.37 4.02
481 508 4.870991 GCTAAACTTTCTCTAAGCATCGGT 59.129 41.667 0.00 0.00 37.37 4.69
482 509 5.112686 AGCTAAACTTTCTCTAAGCATCGG 58.887 41.667 0.00 0.00 37.37 4.18
483 510 6.654793 AAGCTAAACTTTCTCTAAGCATCG 57.345 37.500 0.00 0.00 37.37 3.84
486 513 9.726438 AGAAATAAGCTAAACTTTCTCTAAGCA 57.274 29.630 0.00 0.00 39.97 3.91
504 531 6.690194 ATGCAAGGTGCTTAGAGAAATAAG 57.310 37.500 0.00 0.00 45.31 1.73
505 532 6.434028 ACAATGCAAGGTGCTTAGAGAAATAA 59.566 34.615 0.00 0.00 45.31 1.40
506 533 5.945784 ACAATGCAAGGTGCTTAGAGAAATA 59.054 36.000 0.00 0.00 45.31 1.40
507 534 4.768968 ACAATGCAAGGTGCTTAGAGAAAT 59.231 37.500 0.00 0.00 45.31 2.17
508 535 4.144297 ACAATGCAAGGTGCTTAGAGAAA 58.856 39.130 0.00 0.00 45.31 2.52
509 536 3.754965 ACAATGCAAGGTGCTTAGAGAA 58.245 40.909 0.00 0.00 45.31 2.87
510 537 3.423539 ACAATGCAAGGTGCTTAGAGA 57.576 42.857 0.00 0.00 45.31 3.10
511 538 4.002982 TGTACAATGCAAGGTGCTTAGAG 58.997 43.478 9.81 0.00 45.31 2.43
512 539 4.014569 TGTACAATGCAAGGTGCTTAGA 57.985 40.909 9.81 0.00 45.31 2.10
513 540 4.726416 CTTGTACAATGCAAGGTGCTTAG 58.274 43.478 9.13 4.87 45.31 2.18
514 541 4.764679 CTTGTACAATGCAAGGTGCTTA 57.235 40.909 9.13 0.00 45.31 3.09
515 542 3.648339 CTTGTACAATGCAAGGTGCTT 57.352 42.857 9.13 0.00 45.31 3.91
521 548 1.888512 ACAGGCCTTGTACAATGCAAG 59.111 47.619 29.20 23.43 42.00 4.01
522 549 1.885887 GACAGGCCTTGTACAATGCAA 59.114 47.619 29.20 1.35 41.05 4.08
523 550 1.073763 AGACAGGCCTTGTACAATGCA 59.926 47.619 29.20 1.72 41.05 3.96
524 551 1.826385 AGACAGGCCTTGTACAATGC 58.174 50.000 23.06 23.06 41.05 3.56
525 552 6.515272 AAATTAGACAGGCCTTGTACAATG 57.485 37.500 9.13 7.68 41.05 2.82
526 553 6.828785 CCTAAATTAGACAGGCCTTGTACAAT 59.171 38.462 9.13 5.44 41.05 2.71
527 554 6.177610 CCTAAATTAGACAGGCCTTGTACAA 58.822 40.000 0.00 8.28 41.05 2.41
528 555 5.249852 ACCTAAATTAGACAGGCCTTGTACA 59.750 40.000 0.00 0.00 41.05 2.90
529 556 5.742063 ACCTAAATTAGACAGGCCTTGTAC 58.258 41.667 0.00 0.00 41.05 2.90
530 557 5.104652 GGACCTAAATTAGACAGGCCTTGTA 60.105 44.000 0.00 0.00 41.05 2.41
531 558 4.324331 GGACCTAAATTAGACAGGCCTTGT 60.324 45.833 0.00 4.75 44.55 3.16
532 559 4.200092 GGACCTAAATTAGACAGGCCTTG 58.800 47.826 0.00 0.66 32.31 3.61
533 560 3.850173 TGGACCTAAATTAGACAGGCCTT 59.150 43.478 0.00 0.00 32.31 4.35
534 561 3.200165 GTGGACCTAAATTAGACAGGCCT 59.800 47.826 0.00 0.00 32.31 5.19
535 562 3.542648 GTGGACCTAAATTAGACAGGCC 58.457 50.000 0.83 0.00 32.31 5.19
536 563 3.118884 TCGTGGACCTAAATTAGACAGGC 60.119 47.826 0.83 0.00 32.31 4.85
537 564 4.730949 TCGTGGACCTAAATTAGACAGG 57.269 45.455 0.83 4.17 35.45 4.00
585 612 9.974980 AGAAACCACGTCACATAAAATATTTTT 57.025 25.926 18.14 4.60 0.00 1.94
586 613 9.974980 AAGAAACCACGTCACATAAAATATTTT 57.025 25.926 17.18 17.18 0.00 1.82
596 623 6.443792 GGAAAAATAAGAAACCACGTCACAT 58.556 36.000 0.00 0.00 0.00 3.21
603 630 5.221283 TGTTCCGGGAAAAATAAGAAACCAC 60.221 40.000 11.82 0.00 0.00 4.16
604 631 4.894114 TGTTCCGGGAAAAATAAGAAACCA 59.106 37.500 11.82 0.00 0.00 3.67
606 633 6.741109 TCTTGTTCCGGGAAAAATAAGAAAC 58.259 36.000 12.70 0.00 0.00 2.78
617 644 0.685097 CCAGTCTCTTGTTCCGGGAA 59.315 55.000 5.09 5.09 0.00 3.97
618 645 1.827399 GCCAGTCTCTTGTTCCGGGA 61.827 60.000 0.00 0.00 0.00 5.14
631 658 8.462016 AGATGAATTTTATTGTACTTGCCAGTC 58.538 33.333 0.00 0.00 34.06 3.51
632 659 8.353423 AGATGAATTTTATTGTACTTGCCAGT 57.647 30.769 0.00 0.00 36.99 4.00
633 660 9.722056 GTAGATGAATTTTATTGTACTTGCCAG 57.278 33.333 0.00 0.00 0.00 4.85
634 661 9.237187 TGTAGATGAATTTTATTGTACTTGCCA 57.763 29.630 0.00 0.00 0.00 4.92
635 662 9.503427 GTGTAGATGAATTTTATTGTACTTGCC 57.497 33.333 0.00 0.00 0.00 4.52
672 699 7.121315 GCCCAGTGTAGATGACTTTATTTTCTT 59.879 37.037 0.00 0.00 0.00 2.52
674 701 6.599638 AGCCCAGTGTAGATGACTTTATTTTC 59.400 38.462 0.00 0.00 0.00 2.29
679 706 6.611642 AGATTAGCCCAGTGTAGATGACTTTA 59.388 38.462 0.00 0.00 0.00 1.85
683 710 4.946478 AGATTAGCCCAGTGTAGATGAC 57.054 45.455 0.00 0.00 0.00 3.06
711 738 2.449137 AATCCTTCCAGCCCATCAAG 57.551 50.000 0.00 0.00 0.00 3.02
721 748 7.037586 AGTGGTTAGATGAGTTAAATCCTTCCA 60.038 37.037 0.00 2.22 0.00 3.53
735 762 1.004277 GTTGGCCCAGTGGTTAGATGA 59.996 52.381 8.74 0.00 0.00 2.92
760 787 9.787532 CGGAATACAATTCTGTTGTTCATATTT 57.212 29.630 0.00 0.00 36.96 1.40
761 788 9.173021 TCGGAATACAATTCTGTTGTTCATATT 57.827 29.630 8.03 0.00 36.96 1.28
762 789 8.612619 GTCGGAATACAATTCTGTTGTTCATAT 58.387 33.333 8.03 0.00 36.96 1.78
763 790 7.822334 AGTCGGAATACAATTCTGTTGTTCATA 59.178 33.333 8.03 0.00 36.96 2.15
764 791 6.655003 AGTCGGAATACAATTCTGTTGTTCAT 59.345 34.615 8.03 0.00 36.96 2.57
765 792 5.995282 AGTCGGAATACAATTCTGTTGTTCA 59.005 36.000 8.03 0.00 36.96 3.18
766 793 6.481954 AGTCGGAATACAATTCTGTTGTTC 57.518 37.500 8.03 0.00 36.96 3.18
767 794 6.877611 AAGTCGGAATACAATTCTGTTGTT 57.122 33.333 8.03 0.01 36.96 2.83
813 840 7.422465 AATATATTGCCTTGCAGGAAAAGAA 57.578 32.000 0.00 0.00 36.24 2.52
815 842 6.418819 CGAAATATATTGCCTTGCAGGAAAAG 59.581 38.462 0.00 0.00 36.24 2.27
820 847 3.004629 TGCGAAATATATTGCCTTGCAGG 59.995 43.478 0.00 0.00 40.61 4.85
822 849 4.645762 TTGCGAAATATATTGCCTTGCA 57.354 36.364 0.00 2.81 36.47 4.08
823 850 6.529463 AAATTGCGAAATATATTGCCTTGC 57.471 33.333 0.00 0.12 0.00 4.01
824 851 7.908230 ACAAAATTGCGAAATATATTGCCTTG 58.092 30.769 0.00 3.96 0.00 3.61
825 852 7.763528 TGACAAAATTGCGAAATATATTGCCTT 59.236 29.630 0.00 0.00 0.00 4.35
896 928 3.299977 GGGTCGGGGGTTTGTTGC 61.300 66.667 0.00 0.00 0.00 4.17
900 932 3.904617 TTGGGGGTCGGGGGTTTG 61.905 66.667 0.00 0.00 0.00 2.93
901 933 3.905873 GTTGGGGGTCGGGGGTTT 61.906 66.667 0.00 0.00 0.00 3.27
954 986 3.195698 GTGGCGGAATCGTGGAGC 61.196 66.667 0.00 0.00 38.89 4.70
973 1005 1.586564 CTCGATCGGAGTTGTCGCC 60.587 63.158 16.41 0.00 38.02 5.54
1029 1061 3.849951 GATCCCAGCGCCCTCGAA 61.850 66.667 2.29 0.00 38.10 3.71
1302 1334 1.075050 AGTTACCAGACCTCGTCCTCA 59.925 52.381 0.00 0.00 32.18 3.86
1364 1396 2.587956 CATTGCAATTCTCACACCACG 58.412 47.619 9.83 0.00 0.00 4.94
1422 1455 2.871096 TTCCAAATACTCCCAACGCT 57.129 45.000 0.00 0.00 0.00 5.07
1424 1457 4.944930 TGGTAATTCCAAATACTCCCAACG 59.055 41.667 0.00 0.00 44.12 4.10
1442 1488 0.254747 CCTCGCCCAAATCCTGGTAA 59.745 55.000 0.00 0.00 44.76 2.85
1457 1503 1.826385 ATTCTCTGGCAAAACCCTCG 58.174 50.000 0.00 0.00 37.83 4.63
1537 1606 3.317603 AAAATGCTACAAGCGCCAAAT 57.682 38.095 2.29 0.00 46.26 2.32
1542 1611 5.572896 ACTCAAATTAAAATGCTACAAGCGC 59.427 36.000 0.00 0.00 46.26 5.92
1543 1612 7.566858 AACTCAAATTAAAATGCTACAAGCG 57.433 32.000 0.00 0.00 46.26 4.68
1557 1626 4.622220 GCGGGACAGGAGTAACTCAAATTA 60.622 45.833 0.00 0.00 31.08 1.40
1604 1673 5.010012 CCCTTGTATGCAATTTACCAGGATC 59.990 44.000 14.66 0.00 35.49 3.36
1611 1680 6.531594 GCTTCTTTCCCTTGTATGCAATTTAC 59.468 38.462 0.00 0.00 33.65 2.01
1631 1700 2.353579 ACACGCGTAAAACAAAGCTTCT 59.646 40.909 13.44 0.00 0.00 2.85
1647 1716 3.000727 ACAGCCTAAATTCAGTACACGC 58.999 45.455 0.00 0.00 0.00 5.34
1654 1723 6.149973 TCAGAATCAACACAGCCTAAATTCAG 59.850 38.462 0.00 0.00 0.00 3.02
1733 1802 3.996150 AGTGAGCAAACAAATGACCTG 57.004 42.857 0.00 0.00 0.00 4.00
1734 1803 3.953612 TCAAGTGAGCAAACAAATGACCT 59.046 39.130 0.00 0.00 0.00 3.85
1830 1900 2.587307 ACCTGGAAATAATGGAGCCCTT 59.413 45.455 0.00 0.00 0.00 3.95
1855 1929 2.411535 CCACATATGGCCAGCACAG 58.588 57.895 13.05 1.40 39.82 3.66
1879 1953 6.812998 AGGAAATATCACTGATGGCAATTTG 58.187 36.000 1.42 0.00 0.00 2.32
1926 2012 9.693739 AAAAAGAAGAAAAACCATTAAACCCAT 57.306 25.926 0.00 0.00 0.00 4.00
2066 2189 5.128205 TCATCTGGTTCATCATCATGTTCC 58.872 41.667 0.00 0.00 0.00 3.62
2398 2530 3.448093 TCACAGACTCCAGTGAGAGAT 57.552 47.619 13.56 2.05 41.42 2.75
2453 2585 5.096849 AGATTCTCGAGAAAAGCTTCGTAC 58.903 41.667 30.18 11.77 37.61 3.67
2538 2676 1.311859 ATCATTGGTATGGCTGCACG 58.688 50.000 0.50 0.00 32.40 5.34
2554 2692 7.206687 GCCAATCCATTAAAACGGAATAATCA 58.793 34.615 0.00 0.00 34.22 2.57
2564 2702 2.419990 GCCCAGGCCAATCCATTAAAAC 60.420 50.000 5.01 0.00 37.29 2.43
2572 2710 0.615827 AAGAAAGCCCAGGCCAATCC 60.616 55.000 5.01 0.00 43.17 3.01
2623 3013 6.482308 ACAAGATTACAAAGTACAGTGTGGAC 59.518 38.462 5.88 0.00 0.00 4.02
2691 3081 7.254932 GGTTCTTAATCACCACTATGAAGCATC 60.255 40.741 0.00 0.00 33.38 3.91
2704 3094 5.476945 ACAGGTTCATTGGTTCTTAATCACC 59.523 40.000 0.00 0.00 0.00 4.02
2706 3096 8.877864 ATAACAGGTTCATTGGTTCTTAATCA 57.122 30.769 0.00 0.00 0.00 2.57
2765 3156 8.907885 ACTAAGGAAATGAATTTAATGAGCCTC 58.092 33.333 0.00 0.00 0.00 4.70
2784 3175 9.096823 TCAGAATGGAAGTTAGTTTACTAAGGA 57.903 33.333 2.68 0.00 36.47 3.36
2803 3204 4.916983 TGAACCTGGTTGTTTCAGAATG 57.083 40.909 18.42 0.00 34.36 2.67
2908 3309 1.486439 GGCACACCAAATGAAACACG 58.514 50.000 0.00 0.00 35.26 4.49
2968 3369 2.689553 CTTCCCTCAGAAGCCTCTTC 57.310 55.000 0.00 0.00 45.38 2.87
2996 3397 0.451783 GCAAGCCTATCCCAACGTTG 59.548 55.000 21.47 21.47 0.00 4.10
3376 3778 2.632537 AGAGGTCCAAAGGTGTATGGT 58.367 47.619 0.00 0.00 37.94 3.55
3433 3835 6.961554 GCAGACAACGGATAGAAAATGTTTAG 59.038 38.462 0.00 0.00 0.00 1.85
3440 3842 5.957842 AATTGCAGACAACGGATAGAAAA 57.042 34.783 0.00 0.00 38.99 2.29
3445 3847 6.751514 ACATAAAATTGCAGACAACGGATA 57.248 33.333 0.00 0.00 38.99 2.59
3728 4130 3.567478 ACTTAAGCCCATGATCCTGAC 57.433 47.619 1.29 0.00 0.00 3.51
3757 4159 8.011673 CGCTATAGTTTATCAAATCACACATGG 58.988 37.037 0.84 0.00 0.00 3.66
3772 4174 7.870954 CAGTGGATGGATTTACGCTATAGTTTA 59.129 37.037 0.84 0.00 0.00 2.01
3844 4246 3.825160 TTGCCTCTGCCACACCGTC 62.825 63.158 0.00 0.00 36.33 4.79
3861 4263 7.274447 TCTTTCATTTTTCAGCACTTCCATTT 58.726 30.769 0.00 0.00 0.00 2.32
3928 4330 1.662876 CGGCATTTTGGACACTTCACG 60.663 52.381 0.00 0.00 0.00 4.35
3993 4395 4.719026 ATGGATGCCACTTCTGTCATAT 57.281 40.909 0.00 0.00 35.80 1.78
4022 4424 1.142262 AGTAACCACCCTTGCGAAACT 59.858 47.619 0.00 0.00 0.00 2.66
4039 4441 9.863845 TGACGATGTTTAAATTAGTCATCAGTA 57.136 29.630 13.21 0.58 35.91 2.74
4081 4483 6.431852 TGCATATGGTCATTGGTTAGATCATG 59.568 38.462 4.56 0.00 36.35 3.07
4150 4552 3.369471 GCTTGGACTGTGTGGAATAGCTA 60.369 47.826 0.00 0.00 0.00 3.32
4295 4697 1.444212 CCAACGGCAAAATCCTGCG 60.444 57.895 0.00 0.00 43.60 5.18
4373 4780 3.389329 CCTAGCTTGTCAGGTATGGTCAT 59.611 47.826 0.00 0.00 32.46 3.06
4406 4813 5.047802 GCAATTTCTCATTCTGGTTTCTCCA 60.048 40.000 0.00 0.00 45.01 3.86
4429 4836 2.005971 AAGTAGAAACACCGATCGGC 57.994 50.000 33.62 16.98 39.32 5.54
4439 4846 7.164335 CGAGCTTTTGTTGAGAAAAGTAGAAAC 59.836 37.037 12.93 0.00 42.55 2.78
4446 4853 4.662145 ACACGAGCTTTTGTTGAGAAAAG 58.338 39.130 8.52 8.52 43.16 2.27
4480 4887 2.523902 TGCACAAAAGGCCCTGGG 60.524 61.111 8.86 8.86 0.00 4.45
4481 4888 2.132996 TGTGCACAAAAGGCCCTGG 61.133 57.895 19.28 0.00 0.00 4.45
4497 4906 8.407832 TGCATATATACTGTACGTTAACTGTGT 58.592 33.333 10.28 7.00 34.02 3.72
4520 4929 6.373216 AGCCGTAACTTTACAGAATTATTGCA 59.627 34.615 0.32 0.00 33.28 4.08
4521 4930 6.782150 AGCCGTAACTTTACAGAATTATTGC 58.218 36.000 0.32 0.00 33.28 3.56
4522 4931 7.117454 CGAGCCGTAACTTTACAGAATTATTG 58.883 38.462 0.32 0.00 33.28 1.90
4524 4933 5.751990 CCGAGCCGTAACTTTACAGAATTAT 59.248 40.000 0.32 0.00 33.28 1.28
4526 4935 3.930848 CCGAGCCGTAACTTTACAGAATT 59.069 43.478 0.32 0.00 33.28 2.17
4527 4936 3.518590 CCGAGCCGTAACTTTACAGAAT 58.481 45.455 0.32 0.00 33.28 2.40
4528 4937 2.927871 GCCGAGCCGTAACTTTACAGAA 60.928 50.000 0.32 0.00 33.28 3.02
4538 4947 2.511373 CTGCATGCCGAGCCGTAA 60.511 61.111 16.68 0.00 0.00 3.18
4542 4951 1.065273 CAATTCTGCATGCCGAGCC 59.935 57.895 16.68 0.00 0.00 4.70
4660 5072 6.989659 TGCTCTTATATTAGTTTACGGAGGG 58.010 40.000 0.00 0.00 0.00 4.30
4689 5101 9.250624 AGCGTTTAGATCACTAAAGTAATGATC 57.749 33.333 5.50 5.50 45.42 2.92
4690 5102 9.250624 GAGCGTTTAGATCACTAAAGTAATGAT 57.749 33.333 0.00 0.00 45.42 2.45
4691 5103 8.467598 AGAGCGTTTAGATCACTAAAGTAATGA 58.532 33.333 0.00 0.00 45.42 2.57
4692 5104 8.635877 AGAGCGTTTAGATCACTAAAGTAATG 57.364 34.615 0.00 0.00 45.42 1.90
4709 5121 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
4710 5122 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
4711 5123 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
4712 5124 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
4713 5125 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
4721 5133 9.490083 AATGTAGTACTCCCTCTGTAAACTAAT 57.510 33.333 0.00 0.00 0.00 1.73
4722 5134 8.890410 AATGTAGTACTCCCTCTGTAAACTAA 57.110 34.615 0.00 0.00 0.00 2.24
4723 5135 9.401058 GTAATGTAGTACTCCCTCTGTAAACTA 57.599 37.037 0.00 0.00 0.00 2.24
4724 5136 8.114743 AGTAATGTAGTACTCCCTCTGTAAACT 58.885 37.037 0.00 0.00 27.56 2.66
4725 5137 8.291191 AGTAATGTAGTACTCCCTCTGTAAAC 57.709 38.462 0.00 0.00 27.56 2.01
4726 5138 9.979897 TTAGTAATGTAGTACTCCCTCTGTAAA 57.020 33.333 0.00 0.00 35.85 2.01
4728 5140 9.570468 CATTAGTAATGTAGTACTCCCTCTGTA 57.430 37.037 13.80 0.00 35.85 2.74
4729 5141 7.014422 GCATTAGTAATGTAGTACTCCCTCTGT 59.986 40.741 21.15 0.00 41.01 3.41
4730 5142 7.231722 AGCATTAGTAATGTAGTACTCCCTCTG 59.768 40.741 21.15 0.00 41.01 3.35
4731 5143 7.299134 AGCATTAGTAATGTAGTACTCCCTCT 58.701 38.462 21.15 5.39 41.01 3.69
4732 5144 7.527568 AGCATTAGTAATGTAGTACTCCCTC 57.472 40.000 21.15 3.43 41.01 4.30
4733 5145 7.785506 AGAAGCATTAGTAATGTAGTACTCCCT 59.214 37.037 21.15 6.44 41.01 4.20
4734 5146 7.953752 AGAAGCATTAGTAATGTAGTACTCCC 58.046 38.462 21.15 4.49 41.01 4.30
4735 5147 8.852135 AGAGAAGCATTAGTAATGTAGTACTCC 58.148 37.037 21.15 5.10 41.01 3.85
4748 5160 9.654663 ACGAAGTTTATTTAGAGAAGCATTAGT 57.345 29.630 0.00 0.00 37.78 2.24
4764 5176 9.667107 TGAAAGATTCCTTATGACGAAGTTTAT 57.333 29.630 0.00 0.00 33.77 1.40
4765 5177 9.667107 ATGAAAGATTCCTTATGACGAAGTTTA 57.333 29.630 0.00 0.00 33.77 2.01
4766 5178 7.979444 TGAAAGATTCCTTATGACGAAGTTT 57.021 32.000 0.00 0.00 33.77 2.66
4767 5179 9.667107 TTATGAAAGATTCCTTATGACGAAGTT 57.333 29.630 0.00 0.00 33.77 2.66
4768 5180 9.838339 ATTATGAAAGATTCCTTATGACGAAGT 57.162 29.630 0.00 0.00 35.85 3.01
4893 5309 3.454812 ACTCCAATAGTGCCGGTTCTATT 59.545 43.478 19.86 19.86 36.93 1.73
4909 5325 1.155390 ACGACCCAGGAGACTCCAA 59.845 57.895 23.60 0.00 39.61 3.53
4926 5342 2.739292 TCACAGTACGCTTTCTCACAC 58.261 47.619 0.00 0.00 0.00 3.82
4928 5344 6.531948 AGATTTATCACAGTACGCTTTCTCAC 59.468 38.462 0.00 0.00 0.00 3.51
4951 5367 2.442212 TGGTCGTTTAATGCGTGAGA 57.558 45.000 0.95 0.00 0.00 3.27
4961 5377 3.254411 TGAGCATGCAAAATGGTCGTTTA 59.746 39.130 21.98 0.00 46.22 2.01
4977 5393 9.545105 TGAACACTTTTTAAAATTCATGAGCAT 57.455 25.926 9.56 0.00 0.00 3.79
4978 5394 8.816144 GTGAACACTTTTTAAAATTCATGAGCA 58.184 29.630 14.53 7.06 0.00 4.26
4979 5395 8.816144 TGTGAACACTTTTTAAAATTCATGAGC 58.184 29.630 14.53 5.99 0.00 4.26
5108 5524 9.469807 TGCGAACATTTTATTAAGTCACAAATT 57.530 25.926 0.00 0.00 0.00 1.82
5109 5525 9.469807 TTGCGAACATTTTATTAAGTCACAAAT 57.530 25.926 0.00 0.00 0.00 2.32
5110 5526 8.858003 TTGCGAACATTTTATTAAGTCACAAA 57.142 26.923 0.00 0.00 0.00 2.83
5111 5527 8.858003 TTTGCGAACATTTTATTAAGTCACAA 57.142 26.923 0.00 0.00 0.00 3.33
5112 5528 8.858003 TTTTGCGAACATTTTATTAAGTCACA 57.142 26.923 0.00 0.00 0.00 3.58
5125 5541 8.974408 GGAGTAGTTTTTATTTTTGCGAACATT 58.026 29.630 0.00 0.00 0.00 2.71
5126 5542 7.597369 GGGAGTAGTTTTTATTTTTGCGAACAT 59.403 33.333 0.00 0.00 0.00 2.71
5127 5543 6.919115 GGGAGTAGTTTTTATTTTTGCGAACA 59.081 34.615 0.00 0.00 0.00 3.18
5128 5544 7.143340 AGGGAGTAGTTTTTATTTTTGCGAAC 58.857 34.615 0.00 0.00 0.00 3.95
5129 5545 7.229907 AGAGGGAGTAGTTTTTATTTTTGCGAA 59.770 33.333 0.00 0.00 0.00 4.70
5130 5546 6.713450 AGAGGGAGTAGTTTTTATTTTTGCGA 59.287 34.615 0.00 0.00 0.00 5.10
5131 5547 6.801862 CAGAGGGAGTAGTTTTTATTTTTGCG 59.198 38.462 0.00 0.00 0.00 4.85
5132 5548 7.658261 ACAGAGGGAGTAGTTTTTATTTTTGC 58.342 34.615 0.00 0.00 0.00 3.68
5133 5549 8.297426 GGACAGAGGGAGTAGTTTTTATTTTTG 58.703 37.037 0.00 0.00 0.00 2.44
5134 5550 7.450634 GGGACAGAGGGAGTAGTTTTTATTTTT 59.549 37.037 0.00 0.00 0.00 1.94
5135 5551 6.946583 GGGACAGAGGGAGTAGTTTTTATTTT 59.053 38.462 0.00 0.00 0.00 1.82
5136 5552 6.045106 TGGGACAGAGGGAGTAGTTTTTATTT 59.955 38.462 0.00 0.00 0.00 1.40
5137 5553 5.550403 TGGGACAGAGGGAGTAGTTTTTATT 59.450 40.000 0.00 0.00 0.00 1.40
5138 5554 5.098663 TGGGACAGAGGGAGTAGTTTTTAT 58.901 41.667 0.00 0.00 0.00 1.40
5139 5555 4.495565 TGGGACAGAGGGAGTAGTTTTTA 58.504 43.478 0.00 0.00 0.00 1.52
5140 5556 3.323775 TGGGACAGAGGGAGTAGTTTTT 58.676 45.455 0.00 0.00 0.00 1.94
5141 5557 2.986050 TGGGACAGAGGGAGTAGTTTT 58.014 47.619 0.00 0.00 0.00 2.43
5142 5558 2.715763 TGGGACAGAGGGAGTAGTTT 57.284 50.000 0.00 0.00 0.00 2.66
5148 5564 8.839392 ATGTCTTACATTATGGGACAGAGGGAG 61.839 44.444 17.20 0.00 37.35 4.30
5149 5565 7.099427 ATGTCTTACATTATGGGACAGAGGGA 61.099 42.308 17.20 1.33 37.35 4.20
5150 5566 5.072329 ATGTCTTACATTATGGGACAGAGGG 59.928 44.000 17.20 0.00 37.35 4.30
5151 5567 6.179906 ATGTCTTACATTATGGGACAGAGG 57.820 41.667 17.20 0.00 37.35 3.69
5164 5580 8.635765 TCTTAGCTTCCAAAAATGTCTTACAT 57.364 30.769 0.00 0.00 41.31 2.29
5165 5581 8.635765 ATCTTAGCTTCCAAAAATGTCTTACA 57.364 30.769 0.00 0.00 0.00 2.41
5184 5600 6.734104 AGACAGTTTTGCAAGCTATCTTAG 57.266 37.500 7.73 0.00 0.00 2.18
5185 5601 8.792830 ATAAGACAGTTTTGCAAGCTATCTTA 57.207 30.769 23.60 23.60 32.40 2.10
5186 5602 7.693969 ATAAGACAGTTTTGCAAGCTATCTT 57.306 32.000 21.77 21.77 0.00 2.40
5187 5603 8.970859 ATATAAGACAGTTTTGCAAGCTATCT 57.029 30.769 7.73 7.73 0.00 1.98
5191 5607 8.408601 CCATAATATAAGACAGTTTTGCAAGCT 58.591 33.333 0.00 0.00 0.00 3.74
5192 5608 7.649306 CCCATAATATAAGACAGTTTTGCAAGC 59.351 37.037 0.00 0.00 0.00 4.01
5193 5609 8.902806 TCCCATAATATAAGACAGTTTTGCAAG 58.097 33.333 0.00 0.00 0.00 4.01
5194 5610 8.815565 TCCCATAATATAAGACAGTTTTGCAA 57.184 30.769 0.00 0.00 0.00 4.08
5195 5611 8.849168 CATCCCATAATATAAGACAGTTTTGCA 58.151 33.333 0.00 0.00 0.00 4.08
5196 5612 8.299570 CCATCCCATAATATAAGACAGTTTTGC 58.700 37.037 0.00 0.00 0.00 3.68
5197 5613 9.573166 TCCATCCCATAATATAAGACAGTTTTG 57.427 33.333 0.00 0.00 0.00 2.44
5198 5614 9.799106 CTCCATCCCATAATATAAGACAGTTTT 57.201 33.333 0.00 0.00 0.00 2.43
5199 5615 8.386264 CCTCCATCCCATAATATAAGACAGTTT 58.614 37.037 0.00 0.00 0.00 2.66
5200 5616 7.037297 CCCTCCATCCCATAATATAAGACAGTT 60.037 40.741 0.00 0.00 0.00 3.16
5201 5617 6.445139 CCCTCCATCCCATAATATAAGACAGT 59.555 42.308 0.00 0.00 0.00 3.55
5202 5618 6.673978 TCCCTCCATCCCATAATATAAGACAG 59.326 42.308 0.00 0.00 0.00 3.51
5203 5619 6.443849 GTCCCTCCATCCCATAATATAAGACA 59.556 42.308 0.00 0.00 0.00 3.41
5204 5620 6.674419 AGTCCCTCCATCCCATAATATAAGAC 59.326 42.308 0.00 0.00 0.00 3.01
5205 5621 6.826727 AGTCCCTCCATCCCATAATATAAGA 58.173 40.000 0.00 0.00 0.00 2.10
5206 5622 8.805145 ATAGTCCCTCCATCCCATAATATAAG 57.195 38.462 0.00 0.00 0.00 1.73
5207 5623 9.225682 GAATAGTCCCTCCATCCCATAATATAA 57.774 37.037 0.00 0.00 0.00 0.98
5208 5624 7.794683 GGAATAGTCCCTCCATCCCATAATATA 59.205 40.741 0.00 0.00 38.08 0.86
5209 5625 6.621514 GGAATAGTCCCTCCATCCCATAATAT 59.378 42.308 0.00 0.00 38.08 1.28
5210 5626 5.970640 GGAATAGTCCCTCCATCCCATAATA 59.029 44.000 0.00 0.00 38.08 0.98
5211 5627 4.790790 GGAATAGTCCCTCCATCCCATAAT 59.209 45.833 0.00 0.00 38.08 1.28
5212 5628 4.140204 AGGAATAGTCCCTCCATCCCATAA 60.140 45.833 5.39 0.00 46.30 1.90
5213 5629 3.409636 AGGAATAGTCCCTCCATCCCATA 59.590 47.826 5.39 0.00 46.30 2.74
5214 5630 2.185474 AGGAATAGTCCCTCCATCCCAT 59.815 50.000 5.39 0.00 46.30 4.00
5215 5631 1.585592 AGGAATAGTCCCTCCATCCCA 59.414 52.381 5.39 0.00 46.30 4.37
5216 5632 1.981495 CAGGAATAGTCCCTCCATCCC 59.019 57.143 5.39 0.00 46.30 3.85
5217 5633 2.977808 TCAGGAATAGTCCCTCCATCC 58.022 52.381 5.39 0.00 46.30 3.51
5218 5634 5.574970 AATTCAGGAATAGTCCCTCCATC 57.425 43.478 5.39 0.00 46.30 3.51
5219 5635 6.347061 AAAATTCAGGAATAGTCCCTCCAT 57.653 37.500 5.39 0.00 46.30 3.41
5220 5636 5.796502 AAAATTCAGGAATAGTCCCTCCA 57.203 39.130 5.39 0.00 46.30 3.86
5221 5637 6.901300 AGTAAAATTCAGGAATAGTCCCTCC 58.099 40.000 5.39 0.00 46.30 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.