Multiple sequence alignment - TraesCS2A01G444300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G444300 chr2A 100.000 3520 0 0 1 3520 694580390 694583909 0.000000e+00 6501.0
1 TraesCS2A01G444300 chr2D 93.756 2066 82 17 900 2953 554427949 554429979 0.000000e+00 3057.0
2 TraesCS2A01G444300 chr2D 93.541 898 45 8 9 900 554426568 554427458 0.000000e+00 1325.0
3 TraesCS2A01G444300 chr2D 91.018 167 13 2 3116 3281 554429956 554430121 1.270000e-54 224.0
4 TraesCS2A01G444300 chr2B 92.492 1878 73 20 1 1859 660459586 660461414 0.000000e+00 2625.0
5 TraesCS2A01G444300 chr2B 94.005 417 20 2 1930 2342 660461602 660462017 8.290000e-176 627.0
6 TraesCS2A01G444300 chr2B 93.361 241 14 1 2597 2835 660462305 660462545 4.320000e-94 355.0
7 TraesCS2A01G444300 chr2B 92.424 198 12 1 2340 2534 660462108 660462305 2.680000e-71 279.0
8 TraesCS2A01G444300 chr2B 96.364 55 2 0 2990 3044 728268234 728268288 1.350000e-14 91.6
9 TraesCS2A01G444300 chr1A 88.182 110 12 1 3370 3478 442797081 442797190 2.850000e-26 130.0
10 TraesCS2A01G444300 chr1A 85.981 107 14 1 3373 3478 68020571 68020677 2.870000e-21 113.0
11 TraesCS2A01G444300 chr1A 83.784 111 17 1 3369 3478 28924143 28924253 1.730000e-18 104.0
12 TraesCS2A01G444300 chr4A 87.850 107 12 1 3376 3481 467292821 467292715 1.330000e-24 124.0
13 TraesCS2A01G444300 chr5B 86.538 104 12 2 3376 3478 259557955 259558057 2.870000e-21 113.0
14 TraesCS2A01G444300 chr6A 86.408 103 13 1 3377 3478 79169236 79169134 1.030000e-20 111.0
15 TraesCS2A01G444300 chr6A 80.952 147 20 6 3378 3517 556094865 556095010 3.710000e-20 110.0
16 TraesCS2A01G444300 chr6A 94.737 38 2 0 1795 1832 36926198 36926235 3.790000e-05 60.2
17 TraesCS2A01G444300 chr7A 84.483 116 12 3 3369 3478 660558607 660558722 3.710000e-20 110.0
18 TraesCS2A01G444300 chr7A 96.491 57 2 0 2990 3046 661847185 661847129 1.040000e-15 95.3
19 TraesCS2A01G444300 chr7A 100.000 34 0 0 1799 1832 701309017 701308984 2.930000e-06 63.9
20 TraesCS2A01G444300 chr7B 87.368 95 5 5 2953 3046 630104323 630104235 6.220000e-18 102.0
21 TraesCS2A01G444300 chr7B 100.000 34 0 0 1799 1832 700420752 700420719 2.930000e-06 63.9
22 TraesCS2A01G444300 chr4D 78.767 146 25 6 3373 3515 8774049 8774191 3.740000e-15 93.5
23 TraesCS2A01G444300 chr5D 89.831 59 6 0 1797 1855 416626690 416626632 3.770000e-10 76.8
24 TraesCS2A01G444300 chr3A 95.238 42 2 0 1791 1832 243866115 243866074 2.270000e-07 67.6
25 TraesCS2A01G444300 chr3D 92.857 42 3 0 1791 1832 185065391 185065350 1.060000e-05 62.1
26 TraesCS2A01G444300 chr1B 97.222 36 1 0 1795 1830 615122119 615122154 1.060000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G444300 chr2A 694580390 694583909 3519 False 6501.000000 6501 100.000000 1 3520 1 chr2A.!!$F1 3519
1 TraesCS2A01G444300 chr2D 554426568 554430121 3553 False 1535.333333 3057 92.771667 9 3281 3 chr2D.!!$F1 3272
2 TraesCS2A01G444300 chr2B 660459586 660462545 2959 False 971.500000 2625 93.070500 1 2835 4 chr2B.!!$F2 2834

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
676 686 0.801251 GTTCTGAGCACACATCAGCC 59.199 55.0 0.0 0.0 43.2 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2534 3270 0.68792 TATCCACGCACTGGTTTCCA 59.312 50.0 0.0 0.0 41.52 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
142 143 9.612620 GTAGCATGGTAGATATTTAAATTGTGC 57.387 33.333 5.91 6.01 0.00 4.57
143 144 8.469309 AGCATGGTAGATATTTAAATTGTGCT 57.531 30.769 5.91 7.88 32.44 4.40
177 179 7.486232 GGATAGAATTTTGCTTGCTTGAAGTAC 59.514 37.037 0.00 0.00 33.73 2.73
187 189 2.299013 TGCTTGAAGTACTGGTCGACAT 59.701 45.455 18.91 4.61 0.00 3.06
190 192 2.244695 TGAAGTACTGGTCGACATGGT 58.755 47.619 18.91 14.19 0.00 3.55
205 207 2.225343 ACATGGTGGTTTGGGATGATGT 60.225 45.455 0.00 0.00 0.00 3.06
247 249 9.221775 CGTTGATATTTGCAAATTAGAGGTTAC 57.778 33.333 28.45 14.49 0.00 2.50
329 331 3.691118 GGATAGCTGATTCTTGTTGTGCA 59.309 43.478 0.00 0.00 0.00 4.57
356 358 5.009811 AGGACGATAGGTTAGCTATGTTGAC 59.990 44.000 8.79 0.04 43.77 3.18
366 368 6.270815 GTTAGCTATGTTGACGGAGAACATA 58.729 40.000 12.70 12.70 41.27 2.29
649 659 5.572896 GTCTCAACCAAACAACTTTCAACTG 59.427 40.000 0.00 0.00 0.00 3.16
676 686 0.801251 GTTCTGAGCACACATCAGCC 59.199 55.000 0.00 0.00 43.20 4.85
769 779 5.244851 AGAGAACATAGAACACAGAGAAGCA 59.755 40.000 0.00 0.00 0.00 3.91
814 824 3.995705 CCATCTTTTCGTGTACCGGTTTA 59.004 43.478 15.04 0.00 37.11 2.01
840 850 6.472163 CGCTCCAATAAATTTATCTTGCGTTT 59.528 34.615 23.82 5.59 34.89 3.60
858 868 1.064003 TTGCCGCCATATAGGGTGAT 58.936 50.000 18.31 0.00 41.00 3.06
861 871 2.084546 GCCGCCATATAGGGTGATTTC 58.915 52.381 18.31 1.36 41.00 2.17
929 1430 8.099364 AGGATTTAATAATGCCGTTGATACAG 57.901 34.615 0.00 0.00 32.96 2.74
954 1455 2.555325 TCATGCTTTTGACTTGCAGGAG 59.445 45.455 1.40 0.00 41.51 3.69
1041 1543 4.338879 ACCCTGTGATTCATGAGAAAAGG 58.661 43.478 0.00 0.00 37.29 3.11
1052 1554 0.107459 GAGAAAAGGGAGAGGCGCAT 60.107 55.000 10.83 0.00 0.00 4.73
1167 1671 5.885449 ATGGATCTAGTAGCTTGCTTTCT 57.115 39.130 0.00 3.20 0.00 2.52
1174 1678 7.348080 TCTAGTAGCTTGCTTTCTTGCTATA 57.652 36.000 0.00 0.00 39.69 1.31
1192 1697 6.509656 TGCTATACTTTATTGTCTGGTACCG 58.490 40.000 7.57 2.25 0.00 4.02
1304 1809 7.458397 ACCTTAATGTGGTAAATGAAGACTCA 58.542 34.615 0.00 0.00 35.80 3.41
1584 2089 6.583562 ACTCCTGCTATTATAGTTCCACAAC 58.416 40.000 0.94 0.00 0.00 3.32
1859 2367 3.071747 CCCTCCCCAGCTTATTCTAGAAC 59.928 52.174 7.48 0.00 0.00 3.01
1861 2369 3.970640 CTCCCCAGCTTATTCTAGAACCT 59.029 47.826 7.48 0.00 0.00 3.50
1862 2370 5.148502 CTCCCCAGCTTATTCTAGAACCTA 58.851 45.833 7.48 0.00 0.00 3.08
1863 2371 5.535029 TCCCCAGCTTATTCTAGAACCTAA 58.465 41.667 7.48 2.95 0.00 2.69
1864 2372 6.151049 TCCCCAGCTTATTCTAGAACCTAAT 58.849 40.000 7.48 0.00 0.00 1.73
1865 2373 6.619852 TCCCCAGCTTATTCTAGAACCTAATT 59.380 38.462 7.48 0.00 0.00 1.40
1866 2374 7.128883 TCCCCAGCTTATTCTAGAACCTAATTT 59.871 37.037 7.48 0.00 0.00 1.82
1867 2375 7.780271 CCCCAGCTTATTCTAGAACCTAATTTT 59.220 37.037 7.48 0.00 0.00 1.82
1868 2376 9.190317 CCCAGCTTATTCTAGAACCTAATTTTT 57.810 33.333 7.48 0.00 0.00 1.94
1934 2570 1.229428 CACAGCCATACATAAGCCCG 58.771 55.000 0.00 0.00 0.00 6.13
2377 3113 3.824443 ACAGTTACCACACTATTTTGCCC 59.176 43.478 0.00 0.00 0.00 5.36
2388 3124 6.038825 CACACTATTTTGCCCGGAACAATATA 59.961 38.462 0.73 10.99 0.00 0.86
2435 3171 2.292267 CCAGTGAACAAGCAACTGAGT 58.708 47.619 3.68 0.00 0.00 3.41
2535 3271 1.748493 GCTGAGACCTGAGTAGGACTG 59.252 57.143 3.17 0.00 46.79 3.51
2536 3272 2.374184 CTGAGACCTGAGTAGGACTGG 58.626 57.143 3.17 0.00 46.79 4.00
2576 3312 5.529289 ACATTCCCAGACTACAGGAGATTA 58.471 41.667 0.00 0.00 0.00 1.75
2581 3317 6.864421 TCCCAGACTACAGGAGATTACATAT 58.136 40.000 0.00 0.00 0.00 1.78
2582 3318 6.721668 TCCCAGACTACAGGAGATTACATATG 59.278 42.308 0.00 0.00 0.00 1.78
2586 3322 8.965819 CAGACTACAGGAGATTACATATGCTAT 58.034 37.037 1.58 0.00 0.00 2.97
2590 3326 5.249163 ACAGGAGATTACATATGCTATGCCA 59.751 40.000 1.58 0.00 0.00 4.92
2591 3327 5.583854 CAGGAGATTACATATGCTATGCCAC 59.416 44.000 1.58 0.00 0.00 5.01
2595 3331 6.404708 AGATTACATATGCTATGCCACTCAG 58.595 40.000 1.58 0.00 0.00 3.35
2666 3402 1.466360 GCAGGACGTGTGCATGAATTC 60.466 52.381 13.38 0.00 40.86 2.17
2689 3427 2.757508 CCCTGCGCCTCTCTGAGA 60.758 66.667 4.18 7.24 0.00 3.27
2724 3462 2.759538 AAGCTCTCGTATCGTAGTGC 57.240 50.000 0.00 0.00 33.50 4.40
2725 3463 0.945813 AGCTCTCGTATCGTAGTGCC 59.054 55.000 0.00 0.00 33.73 5.01
2796 3534 3.058570 TGCTGCTATGTTTTTGTACGGTG 60.059 43.478 0.00 0.00 0.00 4.94
2828 3566 0.175760 CGAGGGATGTAGTGTGGTGG 59.824 60.000 0.00 0.00 0.00 4.61
2861 3599 8.789881 TGTAAAATTTTGTCATGTTTACGGAG 57.210 30.769 13.76 0.00 37.43 4.63
2871 3609 4.960469 TCATGTTTACGGAGAAGGGTCTAT 59.040 41.667 0.00 0.00 32.80 1.98
2943 3684 8.970691 TCAGTTGCTGAATAAAATAAAAGAGC 57.029 30.769 0.00 0.00 37.57 4.09
2944 3685 7.750458 TCAGTTGCTGAATAAAATAAAAGAGCG 59.250 33.333 0.00 0.00 37.57 5.03
2945 3686 7.538678 CAGTTGCTGAATAAAATAAAAGAGCGT 59.461 33.333 0.00 0.00 32.44 5.07
2946 3687 7.750903 AGTTGCTGAATAAAATAAAAGAGCGTC 59.249 33.333 0.00 0.00 0.00 5.19
2947 3688 7.139896 TGCTGAATAAAATAAAAGAGCGTCA 57.860 32.000 0.00 0.00 0.00 4.35
2948 3689 7.021196 TGCTGAATAAAATAAAAGAGCGTCAC 58.979 34.615 0.00 0.00 0.00 3.67
2949 3690 7.094805 TGCTGAATAAAATAAAAGAGCGTCACT 60.095 33.333 0.00 0.00 0.00 3.41
2950 3691 7.217070 GCTGAATAAAATAAAAGAGCGTCACTG 59.783 37.037 0.00 0.00 0.00 3.66
2951 3692 7.021196 TGAATAAAATAAAAGAGCGTCACTGC 58.979 34.615 0.00 0.00 0.00 4.40
2976 3717 4.419522 TTTTTAGATTCAACCTCGCTGC 57.580 40.909 0.00 0.00 0.00 5.25
2977 3718 2.024176 TTAGATTCAACCTCGCTGCC 57.976 50.000 0.00 0.00 0.00 4.85
2978 3719 1.195115 TAGATTCAACCTCGCTGCCT 58.805 50.000 0.00 0.00 0.00 4.75
2979 3720 0.326264 AGATTCAACCTCGCTGCCTT 59.674 50.000 0.00 0.00 0.00 4.35
2980 3721 0.449388 GATTCAACCTCGCTGCCTTG 59.551 55.000 0.00 0.00 0.00 3.61
2981 3722 0.250901 ATTCAACCTCGCTGCCTTGT 60.251 50.000 0.00 0.00 0.00 3.16
2982 3723 0.394938 TTCAACCTCGCTGCCTTGTA 59.605 50.000 0.00 0.00 0.00 2.41
2983 3724 0.320421 TCAACCTCGCTGCCTTGTAC 60.320 55.000 0.00 0.00 0.00 2.90
2984 3725 1.374252 AACCTCGCTGCCTTGTACG 60.374 57.895 0.00 0.00 0.00 3.67
2985 3726 2.095978 AACCTCGCTGCCTTGTACGT 62.096 55.000 0.00 0.00 0.00 3.57
2986 3727 1.246056 ACCTCGCTGCCTTGTACGTA 61.246 55.000 0.00 0.00 0.00 3.57
2987 3728 0.801067 CCTCGCTGCCTTGTACGTAC 60.801 60.000 18.90 18.90 0.00 3.67
2988 3729 1.132199 CTCGCTGCCTTGTACGTACG 61.132 60.000 20.18 15.01 0.00 3.67
2989 3730 1.443194 CGCTGCCTTGTACGTACGT 60.443 57.895 25.98 25.98 0.00 3.57
2990 3731 0.179192 CGCTGCCTTGTACGTACGTA 60.179 55.000 23.60 23.60 0.00 3.57
2991 3732 1.532505 CGCTGCCTTGTACGTACGTAT 60.533 52.381 29.05 7.54 32.82 3.06
2992 3733 2.533266 GCTGCCTTGTACGTACGTATT 58.467 47.619 29.05 6.76 32.82 1.89
2993 3734 3.694734 GCTGCCTTGTACGTACGTATTA 58.305 45.455 29.05 18.87 32.82 0.98
2994 3735 4.293415 GCTGCCTTGTACGTACGTATTAT 58.707 43.478 29.05 5.97 32.82 1.28
2995 3736 4.380974 GCTGCCTTGTACGTACGTATTATC 59.619 45.833 29.05 17.29 32.82 1.75
2996 3737 5.755813 CTGCCTTGTACGTACGTATTATCT 58.244 41.667 29.05 4.43 32.82 1.98
2997 3738 6.566564 GCTGCCTTGTACGTACGTATTATCTA 60.567 42.308 29.05 13.17 32.82 1.98
2998 3739 7.258022 TGCCTTGTACGTACGTATTATCTAA 57.742 36.000 29.05 16.05 32.82 2.10
2999 3740 7.355017 TGCCTTGTACGTACGTATTATCTAAG 58.645 38.462 29.05 22.11 32.82 2.18
3000 3741 7.012327 TGCCTTGTACGTACGTATTATCTAAGT 59.988 37.037 29.05 1.59 32.82 2.24
3001 3742 7.322222 GCCTTGTACGTACGTATTATCTAAGTG 59.678 40.741 29.05 18.04 32.82 3.16
3002 3743 7.800380 CCTTGTACGTACGTATTATCTAAGTGG 59.200 40.741 29.05 15.29 32.82 4.00
3003 3744 6.658831 TGTACGTACGTATTATCTAAGTGGC 58.341 40.000 29.05 12.95 32.82 5.01
3004 3745 5.113502 ACGTACGTATTATCTAAGTGGCC 57.886 43.478 21.41 0.00 0.00 5.36
3005 3746 4.823989 ACGTACGTATTATCTAAGTGGCCT 59.176 41.667 21.41 0.00 0.00 5.19
3006 3747 5.049129 ACGTACGTATTATCTAAGTGGCCTC 60.049 44.000 21.41 0.00 0.00 4.70
3007 3748 5.049198 CGTACGTATTATCTAAGTGGCCTCA 60.049 44.000 7.22 0.00 0.00 3.86
3008 3749 5.455056 ACGTATTATCTAAGTGGCCTCAG 57.545 43.478 3.32 0.00 0.00 3.35
3009 3750 4.238514 CGTATTATCTAAGTGGCCTCAGC 58.761 47.826 3.32 0.00 38.76 4.26
3019 3760 3.181367 GCCTCAGCCACGACAATG 58.819 61.111 0.00 0.00 0.00 2.82
3020 3761 1.672356 GCCTCAGCCACGACAATGT 60.672 57.895 0.00 0.00 0.00 2.71
3021 3762 1.639298 GCCTCAGCCACGACAATGTC 61.639 60.000 2.75 2.75 0.00 3.06
3022 3763 0.320683 CCTCAGCCACGACAATGTCA 60.321 55.000 14.24 0.00 32.09 3.58
3023 3764 0.792640 CTCAGCCACGACAATGTCAC 59.207 55.000 14.24 0.00 32.09 3.67
3024 3765 0.105778 TCAGCCACGACAATGTCACA 59.894 50.000 14.24 0.00 32.09 3.58
3025 3766 0.943673 CAGCCACGACAATGTCACAA 59.056 50.000 14.24 0.00 32.09 3.33
3026 3767 1.333308 CAGCCACGACAATGTCACAAA 59.667 47.619 14.24 0.00 32.09 2.83
3027 3768 2.030893 CAGCCACGACAATGTCACAAAT 60.031 45.455 14.24 0.00 32.09 2.32
3028 3769 3.188254 CAGCCACGACAATGTCACAAATA 59.812 43.478 14.24 0.00 32.09 1.40
3029 3770 3.188460 AGCCACGACAATGTCACAAATAC 59.812 43.478 14.24 0.00 32.09 1.89
3030 3771 3.058570 GCCACGACAATGTCACAAATACA 60.059 43.478 14.24 0.00 32.09 2.29
3031 3772 4.555708 GCCACGACAATGTCACAAATACAA 60.556 41.667 14.24 0.00 32.09 2.41
3032 3773 5.698832 CCACGACAATGTCACAAATACAAT 58.301 37.500 14.24 0.00 32.09 2.71
3033 3774 5.794945 CCACGACAATGTCACAAATACAATC 59.205 40.000 14.24 0.00 32.09 2.67
3034 3775 5.794945 CACGACAATGTCACAAATACAATCC 59.205 40.000 14.24 0.00 32.09 3.01
3035 3776 5.021389 CGACAATGTCACAAATACAATCCG 58.979 41.667 14.24 0.00 32.09 4.18
3036 3777 5.309323 ACAATGTCACAAATACAATCCGG 57.691 39.130 0.00 0.00 0.00 5.14
3037 3778 4.764823 ACAATGTCACAAATACAATCCGGT 59.235 37.500 0.00 0.00 0.00 5.28
3038 3779 4.963276 ATGTCACAAATACAATCCGGTG 57.037 40.909 0.00 0.00 0.00 4.94
3039 3780 3.078097 TGTCACAAATACAATCCGGTGG 58.922 45.455 0.00 0.00 0.00 4.61
3040 3781 3.244596 TGTCACAAATACAATCCGGTGGA 60.245 43.478 0.00 0.00 35.55 4.02
3041 3782 3.754323 GTCACAAATACAATCCGGTGGAA 59.246 43.478 0.00 0.00 34.34 3.53
3042 3783 3.754323 TCACAAATACAATCCGGTGGAAC 59.246 43.478 0.00 0.00 34.34 3.62
3043 3784 3.504134 CACAAATACAATCCGGTGGAACA 59.496 43.478 0.00 0.00 39.98 3.18
3044 3785 4.157656 CACAAATACAATCCGGTGGAACAT 59.842 41.667 0.00 0.00 44.52 2.71
3045 3786 5.355630 CACAAATACAATCCGGTGGAACATA 59.644 40.000 0.00 0.00 44.52 2.29
3046 3787 5.588648 ACAAATACAATCCGGTGGAACATAG 59.411 40.000 0.00 0.00 44.52 2.23
3047 3788 2.710096 ACAATCCGGTGGAACATAGG 57.290 50.000 0.00 0.00 44.52 2.57
3048 3789 2.193127 ACAATCCGGTGGAACATAGGA 58.807 47.619 0.00 0.00 46.95 2.94
3049 3790 2.170607 ACAATCCGGTGGAACATAGGAG 59.829 50.000 0.00 0.00 46.35 3.69
3050 3791 2.170607 CAATCCGGTGGAACATAGGAGT 59.829 50.000 0.00 0.00 46.35 3.85
3051 3792 2.832643 TCCGGTGGAACATAGGAGTA 57.167 50.000 0.00 0.00 44.52 2.59
3052 3793 3.323774 TCCGGTGGAACATAGGAGTAT 57.676 47.619 0.00 0.00 44.52 2.12
3053 3794 3.649843 TCCGGTGGAACATAGGAGTATT 58.350 45.455 0.00 0.00 44.52 1.89
3054 3795 4.806892 TCCGGTGGAACATAGGAGTATTA 58.193 43.478 0.00 0.00 44.52 0.98
3055 3796 4.586001 TCCGGTGGAACATAGGAGTATTAC 59.414 45.833 0.00 0.00 44.52 1.89
3056 3797 4.342951 CCGGTGGAACATAGGAGTATTACA 59.657 45.833 0.00 0.00 44.52 2.41
3057 3798 5.011738 CCGGTGGAACATAGGAGTATTACAT 59.988 44.000 0.00 0.00 44.52 2.29
3058 3799 6.209986 CCGGTGGAACATAGGAGTATTACATA 59.790 42.308 0.00 0.00 44.52 2.29
3059 3800 7.093465 CCGGTGGAACATAGGAGTATTACATAT 60.093 40.741 0.00 0.00 44.52 1.78
3060 3801 7.974501 CGGTGGAACATAGGAGTATTACATATC 59.025 40.741 0.00 0.00 44.52 1.63
3061 3802 9.036980 GGTGGAACATAGGAGTATTACATATCT 57.963 37.037 0.00 0.00 44.52 1.98
3078 3819 6.622549 ACATATCTAGCTAGTTTATCGTGGC 58.377 40.000 20.10 0.00 0.00 5.01
3079 3820 6.208797 ACATATCTAGCTAGTTTATCGTGGCA 59.791 38.462 20.10 0.00 0.00 4.92
3080 3821 4.569761 TCTAGCTAGTTTATCGTGGCAG 57.430 45.455 20.10 0.00 0.00 4.85
3081 3822 4.204799 TCTAGCTAGTTTATCGTGGCAGA 58.795 43.478 20.10 0.00 0.00 4.26
3082 3823 4.827835 TCTAGCTAGTTTATCGTGGCAGAT 59.172 41.667 20.10 0.00 34.79 2.90
3083 3824 4.408182 AGCTAGTTTATCGTGGCAGATT 57.592 40.909 5.07 0.00 32.39 2.40
3084 3825 4.770795 AGCTAGTTTATCGTGGCAGATTT 58.229 39.130 5.07 0.00 32.39 2.17
3085 3826 4.572389 AGCTAGTTTATCGTGGCAGATTTG 59.428 41.667 5.07 0.00 32.39 2.32
3094 3835 4.745549 GCAGATTTGCGGTTCGTC 57.254 55.556 0.00 0.00 41.13 4.20
3095 3836 1.866237 GCAGATTTGCGGTTCGTCA 59.134 52.632 0.00 0.00 41.13 4.35
3096 3837 0.179215 GCAGATTTGCGGTTCGTCAG 60.179 55.000 0.00 0.00 41.13 3.51
3097 3838 1.428448 CAGATTTGCGGTTCGTCAGA 58.572 50.000 0.00 0.00 0.00 3.27
3098 3839 1.798223 CAGATTTGCGGTTCGTCAGAA 59.202 47.619 0.00 0.00 0.00 3.02
3099 3840 2.223144 CAGATTTGCGGTTCGTCAGAAA 59.777 45.455 0.00 0.00 38.23 2.52
3100 3841 2.875933 AGATTTGCGGTTCGTCAGAAAA 59.124 40.909 0.00 0.00 38.23 2.29
3101 3842 3.502211 AGATTTGCGGTTCGTCAGAAAAT 59.498 39.130 0.00 1.15 38.23 1.82
3102 3843 3.701532 TTTGCGGTTCGTCAGAAAATT 57.298 38.095 0.00 0.00 38.23 1.82
3103 3844 2.961522 TGCGGTTCGTCAGAAAATTC 57.038 45.000 0.00 0.00 38.23 2.17
3104 3845 2.214347 TGCGGTTCGTCAGAAAATTCA 58.786 42.857 0.00 0.00 38.23 2.57
3105 3846 2.811431 TGCGGTTCGTCAGAAAATTCAT 59.189 40.909 0.00 0.00 38.23 2.57
3106 3847 3.163594 GCGGTTCGTCAGAAAATTCATG 58.836 45.455 0.00 0.00 38.23 3.07
3107 3848 3.163594 CGGTTCGTCAGAAAATTCATGC 58.836 45.455 0.00 0.00 38.23 4.06
3108 3849 3.120199 CGGTTCGTCAGAAAATTCATGCT 60.120 43.478 0.00 0.00 38.23 3.79
3109 3850 4.406943 GGTTCGTCAGAAAATTCATGCTC 58.593 43.478 0.00 0.00 38.23 4.26
3110 3851 4.154918 GGTTCGTCAGAAAATTCATGCTCT 59.845 41.667 0.00 0.00 38.23 4.09
3111 3852 4.934075 TCGTCAGAAAATTCATGCTCTG 57.066 40.909 0.00 0.00 37.28 3.35
3112 3853 4.568956 TCGTCAGAAAATTCATGCTCTGA 58.431 39.130 0.00 0.00 41.47 3.27
3113 3854 4.628766 TCGTCAGAAAATTCATGCTCTGAG 59.371 41.667 0.00 0.00 43.67 3.35
3114 3855 4.201792 CGTCAGAAAATTCATGCTCTGAGG 60.202 45.833 6.83 3.95 43.67 3.86
3115 3856 4.940046 GTCAGAAAATTCATGCTCTGAGGA 59.060 41.667 6.83 3.64 43.67 3.71
3116 3857 5.064962 GTCAGAAAATTCATGCTCTGAGGAG 59.935 44.000 6.83 0.00 43.67 3.69
3117 3858 5.046087 TCAGAAAATTCATGCTCTGAGGAGA 60.046 40.000 6.83 0.90 39.43 3.71
3150 3891 2.219875 CCACTGCTGAGGGAGGTGT 61.220 63.158 0.00 0.00 35.10 4.16
3157 3898 2.159819 CTGAGGGAGGTGTGGTGACG 62.160 65.000 0.00 0.00 0.00 4.35
3187 3928 5.221461 TGTCTGTCCAGTAACTCTTTTCCTC 60.221 44.000 0.00 0.00 0.00 3.71
3196 3937 7.042335 CAGTAACTCTTTTCCTCGGTCATTAT 58.958 38.462 0.00 0.00 0.00 1.28
3199 3940 6.986904 ACTCTTTTCCTCGGTCATTATTTC 57.013 37.500 0.00 0.00 0.00 2.17
3200 3941 6.472887 ACTCTTTTCCTCGGTCATTATTTCA 58.527 36.000 0.00 0.00 0.00 2.69
3284 4026 3.910568 TTTGGGGAAATGATTCATGGC 57.089 42.857 0.00 0.00 37.29 4.40
3285 4027 1.792115 TGGGGAAATGATTCATGGCC 58.208 50.000 0.00 0.00 37.29 5.36
3286 4028 0.675633 GGGGAAATGATTCATGGCCG 59.324 55.000 0.00 0.00 37.29 6.13
3287 4029 1.402787 GGGAAATGATTCATGGCCGT 58.597 50.000 0.00 0.00 37.29 5.68
3288 4030 1.338020 GGGAAATGATTCATGGCCGTC 59.662 52.381 0.00 0.00 37.29 4.79
3289 4031 1.002468 GGAAATGATTCATGGCCGTCG 60.002 52.381 0.00 0.00 37.29 5.12
3290 4032 1.670811 GAAATGATTCATGGCCGTCGT 59.329 47.619 0.00 0.00 35.54 4.34
3291 4033 2.613026 AATGATTCATGGCCGTCGTA 57.387 45.000 0.00 0.00 0.00 3.43
3292 4034 2.839486 ATGATTCATGGCCGTCGTAT 57.161 45.000 0.00 0.00 0.00 3.06
3293 4035 2.148916 TGATTCATGGCCGTCGTATC 57.851 50.000 0.00 0.00 0.00 2.24
3294 4036 1.686587 TGATTCATGGCCGTCGTATCT 59.313 47.619 0.00 0.00 0.00 1.98
3295 4037 2.061773 GATTCATGGCCGTCGTATCTG 58.938 52.381 0.00 0.00 0.00 2.90
3296 4038 1.107945 TTCATGGCCGTCGTATCTGA 58.892 50.000 0.00 0.00 0.00 3.27
3297 4039 1.328279 TCATGGCCGTCGTATCTGAT 58.672 50.000 0.00 0.00 0.00 2.90
3298 4040 1.686587 TCATGGCCGTCGTATCTGATT 59.313 47.619 0.00 0.00 0.00 2.57
3299 4041 2.102420 TCATGGCCGTCGTATCTGATTT 59.898 45.455 0.00 0.00 0.00 2.17
3300 4042 2.684001 TGGCCGTCGTATCTGATTTT 57.316 45.000 0.00 0.00 0.00 1.82
3301 4043 3.804786 TGGCCGTCGTATCTGATTTTA 57.195 42.857 0.00 0.00 0.00 1.52
3302 4044 3.713288 TGGCCGTCGTATCTGATTTTAG 58.287 45.455 0.00 0.00 0.00 1.85
3303 4045 3.131577 TGGCCGTCGTATCTGATTTTAGT 59.868 43.478 0.00 0.00 0.00 2.24
3304 4046 3.734735 GGCCGTCGTATCTGATTTTAGTC 59.265 47.826 0.00 0.00 0.00 2.59
3305 4047 4.357142 GCCGTCGTATCTGATTTTAGTCA 58.643 43.478 0.00 0.00 0.00 3.41
3306 4048 4.206609 GCCGTCGTATCTGATTTTAGTCAC 59.793 45.833 0.00 0.00 0.00 3.67
3307 4049 5.337554 CCGTCGTATCTGATTTTAGTCACA 58.662 41.667 0.00 0.00 0.00 3.58
3308 4050 5.977725 CCGTCGTATCTGATTTTAGTCACAT 59.022 40.000 0.00 0.00 0.00 3.21
3309 4051 6.074835 CCGTCGTATCTGATTTTAGTCACATG 60.075 42.308 0.00 0.00 0.00 3.21
3310 4052 6.691388 CGTCGTATCTGATTTTAGTCACATGA 59.309 38.462 0.00 0.00 0.00 3.07
3311 4053 7.379797 CGTCGTATCTGATTTTAGTCACATGAT 59.620 37.037 0.00 0.00 0.00 2.45
3312 4054 9.678941 GTCGTATCTGATTTTAGTCACATGATA 57.321 33.333 0.00 0.00 0.00 2.15
3323 4065 4.000331 GTCACATGATATGACTCAGGGG 58.000 50.000 0.00 0.00 42.68 4.79
3324 4066 2.974794 TCACATGATATGACTCAGGGGG 59.025 50.000 0.00 0.00 31.42 5.40
3325 4067 1.701847 ACATGATATGACTCAGGGGGC 59.298 52.381 0.00 0.00 31.41 5.80
3326 4068 1.701292 CATGATATGACTCAGGGGGCA 59.299 52.381 0.00 0.00 0.00 5.36
3327 4069 1.891933 TGATATGACTCAGGGGGCAA 58.108 50.000 0.00 0.00 0.00 4.52
3328 4070 1.490490 TGATATGACTCAGGGGGCAAC 59.510 52.381 0.00 0.00 0.00 4.17
3329 4071 0.469917 ATATGACTCAGGGGGCAACG 59.530 55.000 0.00 0.00 37.60 4.10
3330 4072 0.907704 TATGACTCAGGGGGCAACGT 60.908 55.000 0.00 0.00 37.60 3.99
3331 4073 0.907704 ATGACTCAGGGGGCAACGTA 60.908 55.000 0.00 0.00 37.60 3.57
3332 4074 1.079336 GACTCAGGGGGCAACGTAC 60.079 63.158 0.00 0.00 37.60 3.67
3333 4075 1.535687 ACTCAGGGGGCAACGTACT 60.536 57.895 0.00 0.00 37.60 2.73
3334 4076 0.251922 ACTCAGGGGGCAACGTACTA 60.252 55.000 0.00 0.00 37.60 1.82
3335 4077 0.175073 CTCAGGGGGCAACGTACTAC 59.825 60.000 0.00 0.00 37.60 2.73
3336 4078 1.219935 CAGGGGGCAACGTACTACC 59.780 63.158 0.00 0.00 37.60 3.18
3337 4079 1.079804 AGGGGGCAACGTACTACCT 59.920 57.895 0.00 0.00 37.60 3.08
3338 4080 0.336048 AGGGGGCAACGTACTACCTA 59.664 55.000 0.00 0.00 37.60 3.08
3339 4081 0.749049 GGGGGCAACGTACTACCTAG 59.251 60.000 0.00 0.00 37.60 3.02
3340 4082 1.478631 GGGGCAACGTACTACCTAGT 58.521 55.000 0.00 0.00 37.70 2.57
3341 4083 1.827344 GGGGCAACGTACTACCTAGTT 59.173 52.381 0.00 0.00 35.91 2.24
3342 4084 2.234661 GGGGCAACGTACTACCTAGTTT 59.765 50.000 0.00 0.00 35.91 2.66
3343 4085 3.447229 GGGGCAACGTACTACCTAGTTTA 59.553 47.826 0.00 0.00 35.91 2.01
3344 4086 4.440663 GGGGCAACGTACTACCTAGTTTAG 60.441 50.000 0.00 0.00 35.91 1.85
3345 4087 4.399303 GGGCAACGTACTACCTAGTTTAGA 59.601 45.833 0.00 0.00 35.91 2.10
3346 4088 5.068329 GGGCAACGTACTACCTAGTTTAGAT 59.932 44.000 0.00 0.00 35.91 1.98
3347 4089 6.406288 GGGCAACGTACTACCTAGTTTAGATT 60.406 42.308 0.00 0.00 35.91 2.40
3348 4090 7.038048 GGCAACGTACTACCTAGTTTAGATTT 58.962 38.462 0.00 0.00 37.73 2.17
3349 4091 7.547019 GGCAACGTACTACCTAGTTTAGATTTT 59.453 37.037 0.00 0.00 37.73 1.82
3350 4092 8.378421 GCAACGTACTACCTAGTTTAGATTTTG 58.622 37.037 0.00 0.00 37.73 2.44
3351 4093 8.378421 CAACGTACTACCTAGTTTAGATTTTGC 58.622 37.037 0.00 0.00 37.73 3.68
3352 4094 7.605449 ACGTACTACCTAGTTTAGATTTTGCA 58.395 34.615 0.00 0.00 37.73 4.08
3353 4095 8.090214 ACGTACTACCTAGTTTAGATTTTGCAA 58.910 33.333 0.00 0.00 37.73 4.08
3354 4096 9.095065 CGTACTACCTAGTTTAGATTTTGCAAT 57.905 33.333 0.00 0.00 37.73 3.56
3357 4099 9.515226 ACTACCTAGTTTAGATTTTGCAATTGA 57.485 29.630 10.34 0.00 31.13 2.57
3358 4100 9.994432 CTACCTAGTTTAGATTTTGCAATTGAG 57.006 33.333 10.34 0.00 0.00 3.02
3359 4101 7.315890 ACCTAGTTTAGATTTTGCAATTGAGC 58.684 34.615 10.34 0.00 0.00 4.26
3360 4102 6.753744 CCTAGTTTAGATTTTGCAATTGAGCC 59.246 38.462 10.34 0.00 0.00 4.70
3361 4103 6.350629 AGTTTAGATTTTGCAATTGAGCCT 57.649 33.333 10.34 0.00 0.00 4.58
3362 4104 6.762333 AGTTTAGATTTTGCAATTGAGCCTT 58.238 32.000 10.34 0.00 0.00 4.35
3363 4105 7.219322 AGTTTAGATTTTGCAATTGAGCCTTT 58.781 30.769 10.34 0.00 0.00 3.11
3364 4106 7.172019 AGTTTAGATTTTGCAATTGAGCCTTTG 59.828 33.333 10.34 0.00 0.00 2.77
3365 4107 4.964593 AGATTTTGCAATTGAGCCTTTGT 58.035 34.783 10.34 0.00 0.00 2.83
3366 4108 5.370679 AGATTTTGCAATTGAGCCTTTGTT 58.629 33.333 10.34 0.00 0.00 2.83
3367 4109 6.523840 AGATTTTGCAATTGAGCCTTTGTTA 58.476 32.000 10.34 0.00 0.00 2.41
3368 4110 5.982465 TTTTGCAATTGAGCCTTTGTTAC 57.018 34.783 10.34 0.00 0.00 2.50
3369 4111 4.662468 TTGCAATTGAGCCTTTGTTACA 57.338 36.364 10.34 0.00 0.00 2.41
3370 4112 4.662468 TGCAATTGAGCCTTTGTTACAA 57.338 36.364 10.34 0.00 0.00 2.41
3371 4113 5.212532 TGCAATTGAGCCTTTGTTACAAT 57.787 34.783 10.34 0.00 33.50 2.71
3372 4114 5.609423 TGCAATTGAGCCTTTGTTACAATT 58.391 33.333 10.34 0.00 40.29 2.32
3373 4115 6.753180 TGCAATTGAGCCTTTGTTACAATTA 58.247 32.000 10.34 0.00 38.52 1.40
3374 4116 7.212976 TGCAATTGAGCCTTTGTTACAATTAA 58.787 30.769 10.34 0.00 38.52 1.40
3375 4117 7.712639 TGCAATTGAGCCTTTGTTACAATTAAA 59.287 29.630 10.34 0.00 38.52 1.52
3376 4118 8.009409 GCAATTGAGCCTTTGTTACAATTAAAC 58.991 33.333 10.34 0.00 38.52 2.01
3377 4119 8.495148 CAATTGAGCCTTTGTTACAATTAAACC 58.505 33.333 0.00 0.00 38.52 3.27
3378 4120 6.969993 TGAGCCTTTGTTACAATTAAACCT 57.030 33.333 0.00 0.00 0.00 3.50
3379 4121 6.744112 TGAGCCTTTGTTACAATTAAACCTG 58.256 36.000 0.00 0.00 0.00 4.00
3380 4122 6.096673 AGCCTTTGTTACAATTAAACCTGG 57.903 37.500 0.00 0.00 0.00 4.45
3381 4123 4.688879 GCCTTTGTTACAATTAAACCTGGC 59.311 41.667 0.00 11.39 32.52 4.85
3382 4124 5.234752 CCTTTGTTACAATTAAACCTGGCC 58.765 41.667 0.00 0.00 0.00 5.36
3383 4125 5.221541 CCTTTGTTACAATTAAACCTGGCCA 60.222 40.000 4.71 4.71 0.00 5.36
3384 4126 6.426646 TTTGTTACAATTAAACCTGGCCAT 57.573 33.333 5.51 0.00 0.00 4.40
3385 4127 5.398603 TGTTACAATTAAACCTGGCCATG 57.601 39.130 5.51 6.06 0.00 3.66
3386 4128 4.221703 TGTTACAATTAAACCTGGCCATGG 59.778 41.667 5.51 13.05 0.00 3.66
3387 4129 2.187100 ACAATTAAACCTGGCCATGGG 58.813 47.619 20.97 16.10 0.00 4.00
3438 4180 3.702048 CCGACCGTGTCCATGGGT 61.702 66.667 13.02 0.17 41.81 4.51
3439 4181 2.125673 CGACCGTGTCCATGGGTC 60.126 66.667 13.02 9.88 45.34 4.46
3440 4182 2.125673 GACCGTGTCCATGGGTCG 60.126 66.667 13.02 13.67 40.67 4.79
3441 4183 3.659089 GACCGTGTCCATGGGTCGG 62.659 68.421 28.07 28.07 40.67 4.79
3442 4184 4.467084 CCGTGTCCATGGGTCGGG 62.467 72.222 24.73 14.07 37.92 5.14
3444 4186 3.717294 GTGTCCATGGGTCGGGCT 61.717 66.667 13.02 0.00 0.00 5.19
3445 4187 2.933287 TGTCCATGGGTCGGGCTT 60.933 61.111 13.02 0.00 0.00 4.35
3446 4188 2.438434 GTCCATGGGTCGGGCTTG 60.438 66.667 13.02 0.00 0.00 4.01
3447 4189 3.727258 TCCATGGGTCGGGCTTGG 61.727 66.667 13.02 0.00 0.00 3.61
3448 4190 4.820744 CCATGGGTCGGGCTTGGG 62.821 72.222 2.85 0.00 0.00 4.12
3452 4194 3.723922 GGGTCGGGCTTGGGCTTA 61.724 66.667 0.00 0.00 38.73 3.09
3453 4195 2.124695 GGTCGGGCTTGGGCTTAG 60.125 66.667 0.00 0.00 38.73 2.18
3454 4196 2.666098 GGTCGGGCTTGGGCTTAGA 61.666 63.158 0.00 0.00 38.73 2.10
3455 4197 1.527370 GTCGGGCTTGGGCTTAGAT 59.473 57.895 0.00 0.00 38.73 1.98
3456 4198 0.107165 GTCGGGCTTGGGCTTAGATT 60.107 55.000 0.00 0.00 38.73 2.40
3457 4199 0.623723 TCGGGCTTGGGCTTAGATTT 59.376 50.000 0.00 0.00 38.73 2.17
3458 4200 1.025041 CGGGCTTGGGCTTAGATTTC 58.975 55.000 0.00 0.00 38.73 2.17
3459 4201 1.681780 CGGGCTTGGGCTTAGATTTCA 60.682 52.381 0.00 0.00 38.73 2.69
3460 4202 2.456577 GGGCTTGGGCTTAGATTTCAA 58.543 47.619 0.00 0.00 38.73 2.69
3461 4203 2.428530 GGGCTTGGGCTTAGATTTCAAG 59.571 50.000 0.00 0.00 38.18 3.02
3468 4210 3.790152 GCTTAGATTTCAAGCCCAAGG 57.210 47.619 0.00 0.00 42.08 3.61
3489 4231 3.570212 GGCCGGCCCCTGTCATAT 61.570 66.667 36.64 0.00 0.00 1.78
3490 4232 2.515901 GCCGGCCCCTGTCATATT 59.484 61.111 18.11 0.00 0.00 1.28
3491 4233 1.600916 GCCGGCCCCTGTCATATTC 60.601 63.158 18.11 0.00 0.00 1.75
3492 4234 1.836391 CCGGCCCCTGTCATATTCA 59.164 57.895 0.00 0.00 0.00 2.57
3493 4235 0.401738 CCGGCCCCTGTCATATTCAT 59.598 55.000 0.00 0.00 0.00 2.57
3494 4236 1.527034 CGGCCCCTGTCATATTCATG 58.473 55.000 0.00 0.00 0.00 3.07
3495 4237 1.072173 CGGCCCCTGTCATATTCATGA 59.928 52.381 0.00 0.00 38.90 3.07
3496 4238 2.787994 GGCCCCTGTCATATTCATGAG 58.212 52.381 0.00 0.00 41.87 2.90
3497 4239 2.107204 GGCCCCTGTCATATTCATGAGT 59.893 50.000 0.00 0.00 41.87 3.41
3498 4240 3.435601 GGCCCCTGTCATATTCATGAGTT 60.436 47.826 0.00 0.00 41.87 3.01
3499 4241 4.202461 GGCCCCTGTCATATTCATGAGTTA 60.202 45.833 0.00 0.00 41.87 2.24
3500 4242 5.376625 GCCCCTGTCATATTCATGAGTTAA 58.623 41.667 0.00 0.00 41.87 2.01
3501 4243 5.239525 GCCCCTGTCATATTCATGAGTTAAC 59.760 44.000 0.00 0.00 41.87 2.01
3502 4244 5.466728 CCCCTGTCATATTCATGAGTTAACG 59.533 44.000 0.00 0.00 41.87 3.18
3503 4245 6.280643 CCCTGTCATATTCATGAGTTAACGA 58.719 40.000 0.00 0.00 41.87 3.85
3504 4246 6.761242 CCCTGTCATATTCATGAGTTAACGAA 59.239 38.462 0.00 0.00 41.87 3.85
3505 4247 7.042456 CCCTGTCATATTCATGAGTTAACGAAG 60.042 40.741 0.00 0.00 41.87 3.79
3506 4248 7.706607 CCTGTCATATTCATGAGTTAACGAAGA 59.293 37.037 0.00 0.00 41.87 2.87
3507 4249 8.634475 TGTCATATTCATGAGTTAACGAAGAG 57.366 34.615 0.00 0.00 41.87 2.85
3508 4250 7.706607 TGTCATATTCATGAGTTAACGAAGAGG 59.293 37.037 0.00 0.00 41.87 3.69
3509 4251 6.701841 TCATATTCATGAGTTAACGAAGAGGC 59.298 38.462 0.00 0.00 36.22 4.70
3510 4252 3.247006 TCATGAGTTAACGAAGAGGCC 57.753 47.619 0.00 0.00 0.00 5.19
3511 4253 2.093658 TCATGAGTTAACGAAGAGGCCC 60.094 50.000 0.00 0.00 0.00 5.80
3512 4254 0.245539 TGAGTTAACGAAGAGGCCCG 59.754 55.000 0.00 0.00 0.00 6.13
3513 4255 0.459759 GAGTTAACGAAGAGGCCCGG 60.460 60.000 0.00 0.00 0.00 5.73
3514 4256 2.104859 GTTAACGAAGAGGCCCGGC 61.105 63.158 0.00 0.00 0.00 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 3.445096 ACTCCATTGCAAGGAAATACAGC 59.555 43.478 13.66 0.00 34.08 4.40
6 7 4.155826 CGAACTCCATTGCAAGGAAATACA 59.844 41.667 13.66 0.00 34.08 2.29
13 14 0.883833 AAGCGAACTCCATTGCAAGG 59.116 50.000 4.94 4.26 0.00 3.61
142 143 6.867662 AGCAAAATTCTATCCGGTATGAAG 57.132 37.500 0.00 0.00 0.00 3.02
143 144 6.459573 GCAAGCAAAATTCTATCCGGTATGAA 60.460 38.462 0.00 4.77 0.00 2.57
177 179 0.874390 CAAACCACCATGTCGACCAG 59.126 55.000 14.12 5.17 0.00 4.00
187 189 2.376855 TGTACATCATCCCAAACCACCA 59.623 45.455 0.00 0.00 0.00 4.17
190 192 4.015764 CACATGTACATCATCCCAAACCA 58.984 43.478 5.07 0.00 34.09 3.67
260 262 8.621073 ACTTTCCTATTGAAATAACCTAAGGGT 58.379 33.333 0.00 0.00 43.97 4.34
287 289 8.787852 GCTATCCTACCAGAAATATTTTTCCAG 58.212 37.037 1.43 0.71 41.86 3.86
303 305 5.525378 CACAACAAGAATCAGCTATCCTACC 59.475 44.000 0.00 0.00 0.00 3.18
329 331 5.386924 ACATAGCTAACCTATCGTCCTCTT 58.613 41.667 0.00 0.00 34.49 2.85
356 358 4.875536 TGGTTCACATGATTATGTTCTCCG 59.124 41.667 0.00 0.00 45.01 4.63
536 545 7.299586 TGTATGTTAATTGACCGTAAAGCAAC 58.700 34.615 0.00 0.00 0.00 4.17
597 607 8.478877 ACTGTGAAACTATAGATTTGGTAGGAG 58.521 37.037 6.78 0.00 38.04 3.69
649 659 2.028112 TGTGTGCTCAGAACTATGGGAC 60.028 50.000 0.00 0.00 0.00 4.46
676 686 1.430479 CTGCTGTGAGCTGTGAGAAG 58.570 55.000 0.00 0.00 42.97 2.85
814 824 5.510671 CGCAAGATAAATTTATTGGAGCGT 58.489 37.500 24.31 7.71 43.02 5.07
840 850 1.064003 AATCACCCTATATGGCGGCA 58.936 50.000 16.34 16.34 0.00 5.69
858 868 4.097135 TCCTTTTGACAGTCAATTGCGAAA 59.903 37.500 16.89 6.28 36.11 3.46
861 871 3.624326 TCCTTTTGACAGTCAATTGCG 57.376 42.857 16.89 5.50 36.11 4.85
929 1430 4.025480 CCTGCAAGTCAAAAGCATGAAAAC 60.025 41.667 0.00 0.00 37.68 2.43
954 1455 5.300752 TCTGATTGGAGAAGTCAGACAAAC 58.699 41.667 2.66 0.00 42.36 2.93
1052 1554 3.126703 TTTTCTGGTGCCTGCCGGA 62.127 57.895 5.05 0.00 41.82 5.14
1143 1645 7.552050 AGAAAGCAAGCTACTAGATCCATAT 57.448 36.000 0.00 0.00 0.00 1.78
1144 1646 6.985653 AGAAAGCAAGCTACTAGATCCATA 57.014 37.500 0.00 0.00 0.00 2.74
1145 1647 5.885449 AGAAAGCAAGCTACTAGATCCAT 57.115 39.130 0.00 0.00 0.00 3.41
1146 1648 5.423015 CAAGAAAGCAAGCTACTAGATCCA 58.577 41.667 0.00 0.00 0.00 3.41
1167 1671 6.982141 CGGTACCAGACAATAAAGTATAGCAA 59.018 38.462 13.54 0.00 0.00 3.91
1174 1678 4.612264 ACACGGTACCAGACAATAAAGT 57.388 40.909 13.54 0.00 0.00 2.66
1189 1694 5.493809 ACAAGGTAATTATGCTAACACGGT 58.506 37.500 0.00 0.00 0.00 4.83
1192 1697 7.985752 AGGAGTACAAGGTAATTATGCTAACAC 59.014 37.037 0.00 0.00 0.00 3.32
1304 1809 7.819415 TGACTAAGTTCATCATTGATTTCGACT 59.181 33.333 0.00 0.00 0.00 4.18
1680 2186 3.879295 TCAGCAACATATTAAGGCAGCTC 59.121 43.478 0.00 0.00 0.00 4.09
1867 2375 8.598202 AACTTTAGGTTGGGTTTCTAGAAAAA 57.402 30.769 19.30 7.99 36.70 1.94
1868 2376 8.598202 AAACTTTAGGTTGGGTTTCTAGAAAA 57.402 30.769 19.30 1.65 38.29 2.29
1869 2377 8.598202 AAAACTTTAGGTTGGGTTTCTAGAAA 57.402 30.769 13.99 13.99 38.29 2.52
1870 2378 9.871175 ATAAAACTTTAGGTTGGGTTTCTAGAA 57.129 29.630 0.00 0.00 38.29 2.10
1871 2379 9.871175 AATAAAACTTTAGGTTGGGTTTCTAGA 57.129 29.630 0.00 0.00 38.29 2.43
1878 2386 6.183361 CCCCAAAATAAAACTTTAGGTTGGGT 60.183 38.462 25.93 0.00 46.59 4.51
1890 2398 6.093495 GGAAATAAGCTGCCCCAAAATAAAAC 59.907 38.462 0.00 0.00 0.00 2.43
1934 2570 4.796290 GCAAGTTAAGGGCCAGTTCTTTTC 60.796 45.833 6.18 0.00 0.00 2.29
2050 2686 3.763097 ATGATGCATTTACACCACACG 57.237 42.857 0.00 0.00 0.00 4.49
2256 2896 4.567537 CCACCTACATGGGTCAGAAATCAA 60.568 45.833 0.00 0.00 41.11 2.57
2404 3140 1.144913 TGTTCACTGGGAAAGAAGGGG 59.855 52.381 0.00 0.00 37.23 4.79
2435 3171 2.925352 GCGACGCGTTCTTTGTCA 59.075 55.556 15.53 0.00 32.91 3.58
2534 3270 0.687920 TATCCACGCACTGGTTTCCA 59.312 50.000 0.00 0.00 41.52 3.53
2535 3271 1.084289 GTATCCACGCACTGGTTTCC 58.916 55.000 0.00 0.00 41.52 3.13
2536 3272 1.803334 TGTATCCACGCACTGGTTTC 58.197 50.000 0.00 0.00 41.52 2.78
2558 3294 6.573289 GCATATGTAATCTCCTGTAGTCTGGG 60.573 46.154 4.29 0.00 34.13 4.45
2565 3301 6.440328 TGGCATAGCATATGTAATCTCCTGTA 59.560 38.462 4.29 0.00 0.00 2.74
2569 3305 5.738909 AGTGGCATAGCATATGTAATCTCC 58.261 41.667 4.29 0.50 0.00 3.71
2576 3312 2.105306 TGCTGAGTGGCATAGCATATGT 59.895 45.455 16.59 0.00 42.05 2.29
2586 3322 7.053498 TCAAAGTAATAATATGCTGAGTGGCA 58.947 34.615 0.00 0.00 46.63 4.92
2724 3462 2.031807 CACTCGACGACCTACATACTGG 59.968 54.545 0.00 0.00 0.00 4.00
2725 3463 2.539142 GCACTCGACGACCTACATACTG 60.539 54.545 0.00 0.00 0.00 2.74
2796 3534 2.890808 TCCCTCGATGTACAATCAGC 57.109 50.000 0.00 0.00 0.00 4.26
2828 3566 4.602995 TGACAAAATTTTACAGCACGGAC 58.397 39.130 2.44 0.00 0.00 4.79
2890 3629 8.341173 GCATGACTAAAAAGGATAGAACATGAG 58.659 37.037 18.76 0.00 38.82 2.90
2908 3647 3.683365 TCAGCAACTGAAGCATGACTA 57.317 42.857 0.00 0.00 37.57 2.59
2930 3671 6.554334 AAGCAGTGACGCTCTTTTATTTTA 57.446 33.333 0.00 0.00 42.89 1.52
2936 3677 3.782889 AAAAAGCAGTGACGCTCTTTT 57.217 38.095 14.87 14.87 42.89 2.27
2955 3696 3.190535 GGCAGCGAGGTTGAATCTAAAAA 59.809 43.478 0.00 0.00 0.00 1.94
2956 3697 2.747446 GGCAGCGAGGTTGAATCTAAAA 59.253 45.455 0.00 0.00 0.00 1.52
2957 3698 2.027192 AGGCAGCGAGGTTGAATCTAAA 60.027 45.455 0.00 0.00 0.00 1.85
2958 3699 1.555075 AGGCAGCGAGGTTGAATCTAA 59.445 47.619 0.00 0.00 0.00 2.10
2959 3700 1.195115 AGGCAGCGAGGTTGAATCTA 58.805 50.000 0.00 0.00 0.00 1.98
2960 3701 0.326264 AAGGCAGCGAGGTTGAATCT 59.674 50.000 0.00 0.00 0.00 2.40
2961 3702 0.449388 CAAGGCAGCGAGGTTGAATC 59.551 55.000 0.00 0.00 0.00 2.52
2962 3703 0.250901 ACAAGGCAGCGAGGTTGAAT 60.251 50.000 0.00 0.00 0.00 2.57
2963 3704 0.394938 TACAAGGCAGCGAGGTTGAA 59.605 50.000 0.00 0.00 0.00 2.69
2964 3705 0.320421 GTACAAGGCAGCGAGGTTGA 60.320 55.000 0.00 0.00 0.00 3.18
2965 3706 1.626654 CGTACAAGGCAGCGAGGTTG 61.627 60.000 0.00 0.00 0.00 3.77
2966 3707 1.374252 CGTACAAGGCAGCGAGGTT 60.374 57.895 0.00 0.00 0.00 3.50
2967 3708 1.246056 TACGTACAAGGCAGCGAGGT 61.246 55.000 0.00 0.00 0.00 3.85
2968 3709 0.801067 GTACGTACAAGGCAGCGAGG 60.801 60.000 20.67 0.00 0.00 4.63
2969 3710 1.132199 CGTACGTACAAGGCAGCGAG 61.132 60.000 24.50 1.32 0.00 5.03
2970 3711 1.154169 CGTACGTACAAGGCAGCGA 60.154 57.895 24.50 0.00 0.00 4.93
2971 3712 0.179192 TACGTACGTACAAGGCAGCG 60.179 55.000 23.60 10.98 0.00 5.18
2972 3713 2.199291 ATACGTACGTACAAGGCAGC 57.801 50.000 28.99 0.00 33.01 5.25
2973 3714 5.755813 AGATAATACGTACGTACAAGGCAG 58.244 41.667 28.99 10.10 33.01 4.85
2974 3715 5.756195 AGATAATACGTACGTACAAGGCA 57.244 39.130 28.99 8.81 33.01 4.75
2975 3716 7.322222 CACTTAGATAATACGTACGTACAAGGC 59.678 40.741 28.99 17.04 33.01 4.35
2976 3717 7.800380 CCACTTAGATAATACGTACGTACAAGG 59.200 40.741 28.99 15.48 33.01 3.61
2977 3718 7.322222 GCCACTTAGATAATACGTACGTACAAG 59.678 40.741 28.99 22.80 33.01 3.16
2978 3719 7.132213 GCCACTTAGATAATACGTACGTACAA 58.868 38.462 28.99 19.90 33.01 2.41
2979 3720 6.293407 GGCCACTTAGATAATACGTACGTACA 60.293 42.308 28.99 19.95 33.01 2.90
2980 3721 6.073003 AGGCCACTTAGATAATACGTACGTAC 60.073 42.308 28.99 16.66 33.01 3.67
2981 3722 5.997746 AGGCCACTTAGATAATACGTACGTA 59.002 40.000 28.62 28.62 34.87 3.57
2982 3723 4.823989 AGGCCACTTAGATAATACGTACGT 59.176 41.667 25.98 25.98 0.00 3.57
2983 3724 5.049198 TGAGGCCACTTAGATAATACGTACG 60.049 44.000 15.01 15.01 0.00 3.67
2984 3725 6.323203 TGAGGCCACTTAGATAATACGTAC 57.677 41.667 5.01 0.00 0.00 3.67
2985 3726 5.048224 GCTGAGGCCACTTAGATAATACGTA 60.048 44.000 5.01 0.00 32.35 3.57
2986 3727 4.262079 GCTGAGGCCACTTAGATAATACGT 60.262 45.833 5.01 0.00 32.35 3.57
2987 3728 4.238514 GCTGAGGCCACTTAGATAATACG 58.761 47.826 5.01 0.00 32.35 3.06
3002 3743 1.639298 GACATTGTCGTGGCTGAGGC 61.639 60.000 0.00 0.00 37.82 4.70
3003 3744 0.320683 TGACATTGTCGTGGCTGAGG 60.321 55.000 11.97 0.00 34.95 3.86
3004 3745 0.792640 GTGACATTGTCGTGGCTGAG 59.207 55.000 11.97 0.00 34.95 3.35
3005 3746 0.105778 TGTGACATTGTCGTGGCTGA 59.894 50.000 11.97 0.00 34.95 4.26
3006 3747 0.943673 TTGTGACATTGTCGTGGCTG 59.056 50.000 11.97 0.00 34.95 4.85
3007 3748 1.674359 TTTGTGACATTGTCGTGGCT 58.326 45.000 11.97 0.00 34.95 4.75
3008 3749 2.704725 ATTTGTGACATTGTCGTGGC 57.295 45.000 11.97 3.53 34.95 5.01
3009 3750 4.740741 TGTATTTGTGACATTGTCGTGG 57.259 40.909 11.97 0.00 34.95 4.94
3010 3751 5.794945 GGATTGTATTTGTGACATTGTCGTG 59.205 40.000 11.97 0.00 34.95 4.35
3011 3752 5.390461 CGGATTGTATTTGTGACATTGTCGT 60.390 40.000 11.97 0.00 34.95 4.34
3012 3753 5.021389 CGGATTGTATTTGTGACATTGTCG 58.979 41.667 11.97 0.00 34.95 4.35
3013 3754 5.106317 ACCGGATTGTATTTGTGACATTGTC 60.106 40.000 9.46 9.93 0.00 3.18
3014 3755 4.764823 ACCGGATTGTATTTGTGACATTGT 59.235 37.500 9.46 0.00 0.00 2.71
3015 3756 5.094812 CACCGGATTGTATTTGTGACATTG 58.905 41.667 9.46 0.00 0.00 2.82
3016 3757 4.157656 CCACCGGATTGTATTTGTGACATT 59.842 41.667 9.46 0.00 0.00 2.71
3017 3758 3.694072 CCACCGGATTGTATTTGTGACAT 59.306 43.478 9.46 0.00 0.00 3.06
3018 3759 3.078097 CCACCGGATTGTATTTGTGACA 58.922 45.455 9.46 0.00 0.00 3.58
3019 3760 3.340034 TCCACCGGATTGTATTTGTGAC 58.660 45.455 9.46 0.00 0.00 3.67
3020 3761 3.704800 TCCACCGGATTGTATTTGTGA 57.295 42.857 9.46 0.00 0.00 3.58
3021 3762 3.504134 TGTTCCACCGGATTGTATTTGTG 59.496 43.478 9.46 0.00 0.00 3.33
3022 3763 3.757270 TGTTCCACCGGATTGTATTTGT 58.243 40.909 9.46 0.00 0.00 2.83
3023 3764 4.981806 ATGTTCCACCGGATTGTATTTG 57.018 40.909 9.46 0.00 0.00 2.32
3024 3765 5.104277 TCCTATGTTCCACCGGATTGTATTT 60.104 40.000 9.46 0.00 0.00 1.40
3025 3766 4.410883 TCCTATGTTCCACCGGATTGTATT 59.589 41.667 9.46 0.00 0.00 1.89
3026 3767 3.971305 TCCTATGTTCCACCGGATTGTAT 59.029 43.478 9.46 0.00 0.00 2.29
3027 3768 3.376636 TCCTATGTTCCACCGGATTGTA 58.623 45.455 9.46 0.00 0.00 2.41
3028 3769 2.170607 CTCCTATGTTCCACCGGATTGT 59.829 50.000 9.46 0.00 0.00 2.71
3029 3770 2.170607 ACTCCTATGTTCCACCGGATTG 59.829 50.000 9.46 0.00 0.00 2.67
3030 3771 2.478292 ACTCCTATGTTCCACCGGATT 58.522 47.619 9.46 0.00 0.00 3.01
3031 3772 2.176247 ACTCCTATGTTCCACCGGAT 57.824 50.000 9.46 0.00 0.00 4.18
3032 3773 2.832643 TACTCCTATGTTCCACCGGA 57.167 50.000 9.46 0.00 0.00 5.14
3033 3774 4.342951 TGTAATACTCCTATGTTCCACCGG 59.657 45.833 0.00 0.00 0.00 5.28
3034 3775 5.524971 TGTAATACTCCTATGTTCCACCG 57.475 43.478 0.00 0.00 0.00 4.94
3035 3776 9.036980 AGATATGTAATACTCCTATGTTCCACC 57.963 37.037 0.00 0.00 0.00 4.61
3052 3793 8.242053 GCCACGATAAACTAGCTAGATATGTAA 58.758 37.037 27.45 5.59 0.00 2.41
3053 3794 7.392393 TGCCACGATAAACTAGCTAGATATGTA 59.608 37.037 27.45 10.98 0.00 2.29
3054 3795 6.208797 TGCCACGATAAACTAGCTAGATATGT 59.791 38.462 27.45 18.25 0.00 2.29
3055 3796 6.621613 TGCCACGATAAACTAGCTAGATATG 58.378 40.000 27.45 17.76 0.00 1.78
3056 3797 6.659668 TCTGCCACGATAAACTAGCTAGATAT 59.340 38.462 27.45 21.66 0.00 1.63
3057 3798 6.002082 TCTGCCACGATAAACTAGCTAGATA 58.998 40.000 27.45 18.28 0.00 1.98
3058 3799 4.827835 TCTGCCACGATAAACTAGCTAGAT 59.172 41.667 27.45 13.16 0.00 1.98
3059 3800 4.204799 TCTGCCACGATAAACTAGCTAGA 58.795 43.478 27.45 5.35 0.00 2.43
3060 3801 4.569761 TCTGCCACGATAAACTAGCTAG 57.430 45.455 19.44 19.44 0.00 3.42
3061 3802 5.531122 AATCTGCCACGATAAACTAGCTA 57.469 39.130 0.00 0.00 0.00 3.32
3062 3803 4.408182 AATCTGCCACGATAAACTAGCT 57.592 40.909 0.00 0.00 0.00 3.32
3063 3804 4.786609 GCAAATCTGCCACGATAAACTAGC 60.787 45.833 0.00 0.00 43.26 3.42
3064 3805 4.550831 CGCAAATCTGCCACGATAAACTAG 60.551 45.833 0.00 0.00 46.56 2.57
3065 3806 3.308595 CGCAAATCTGCCACGATAAACTA 59.691 43.478 0.00 0.00 46.56 2.24
3066 3807 2.095853 CGCAAATCTGCCACGATAAACT 59.904 45.455 0.00 0.00 46.56 2.66
3067 3808 2.440501 CGCAAATCTGCCACGATAAAC 58.559 47.619 0.00 0.00 46.56 2.01
3068 3809 1.400142 CCGCAAATCTGCCACGATAAA 59.600 47.619 0.00 0.00 46.56 1.40
3069 3810 1.013596 CCGCAAATCTGCCACGATAA 58.986 50.000 0.00 0.00 46.56 1.75
3070 3811 0.107897 ACCGCAAATCTGCCACGATA 60.108 50.000 0.00 0.00 46.56 2.92
3071 3812 0.960364 AACCGCAAATCTGCCACGAT 60.960 50.000 0.00 0.00 46.56 3.73
3072 3813 1.573829 GAACCGCAAATCTGCCACGA 61.574 55.000 0.00 0.00 46.56 4.35
3073 3814 1.154225 GAACCGCAAATCTGCCACG 60.154 57.895 0.00 0.00 46.56 4.94
3074 3815 1.154225 CGAACCGCAAATCTGCCAC 60.154 57.895 0.00 0.00 46.56 5.01
3075 3816 1.573829 GACGAACCGCAAATCTGCCA 61.574 55.000 0.00 0.00 46.56 4.92
3076 3817 1.134694 GACGAACCGCAAATCTGCC 59.865 57.895 0.00 0.00 46.56 4.85
3077 3818 0.179215 CTGACGAACCGCAAATCTGC 60.179 55.000 0.00 0.00 45.75 4.26
3078 3819 1.428448 TCTGACGAACCGCAAATCTG 58.572 50.000 0.00 0.00 0.00 2.90
3079 3820 2.163818 TTCTGACGAACCGCAAATCT 57.836 45.000 0.00 0.00 0.00 2.40
3080 3821 2.961522 TTTCTGACGAACCGCAAATC 57.038 45.000 0.00 0.00 0.00 2.17
3081 3822 3.915437 ATTTTCTGACGAACCGCAAAT 57.085 38.095 0.00 0.00 0.00 2.32
3082 3823 3.065510 TGAATTTTCTGACGAACCGCAAA 59.934 39.130 0.00 0.00 0.00 3.68
3083 3824 2.614520 TGAATTTTCTGACGAACCGCAA 59.385 40.909 0.00 0.00 0.00 4.85
3084 3825 2.214347 TGAATTTTCTGACGAACCGCA 58.786 42.857 0.00 0.00 0.00 5.69
3085 3826 2.961522 TGAATTTTCTGACGAACCGC 57.038 45.000 0.00 0.00 0.00 5.68
3086 3827 3.120199 AGCATGAATTTTCTGACGAACCG 60.120 43.478 0.00 0.00 0.00 4.44
3087 3828 4.154918 AGAGCATGAATTTTCTGACGAACC 59.845 41.667 0.00 0.00 0.00 3.62
3088 3829 5.084722 CAGAGCATGAATTTTCTGACGAAC 58.915 41.667 0.00 0.00 39.46 3.95
3089 3830 4.996758 TCAGAGCATGAATTTTCTGACGAA 59.003 37.500 0.00 0.00 40.65 3.85
3090 3831 4.568956 TCAGAGCATGAATTTTCTGACGA 58.431 39.130 0.00 0.00 40.65 4.20
3091 3832 4.201792 CCTCAGAGCATGAATTTTCTGACG 60.202 45.833 0.00 0.00 40.65 4.35
3092 3833 4.940046 TCCTCAGAGCATGAATTTTCTGAC 59.060 41.667 0.00 0.00 40.65 3.51
3093 3834 5.046087 TCTCCTCAGAGCATGAATTTTCTGA 60.046 40.000 0.00 5.62 42.61 3.27
3094 3835 5.183969 TCTCCTCAGAGCATGAATTTTCTG 58.816 41.667 0.00 1.28 40.22 3.02
3095 3836 5.189342 TCTCTCCTCAGAGCATGAATTTTCT 59.811 40.000 0.00 0.00 45.46 2.52
3096 3837 5.426504 TCTCTCCTCAGAGCATGAATTTTC 58.573 41.667 0.00 0.00 45.46 2.29
3097 3838 5.432680 TCTCTCCTCAGAGCATGAATTTT 57.567 39.130 0.00 0.00 45.46 1.82
3098 3839 5.432680 TTCTCTCCTCAGAGCATGAATTT 57.567 39.130 0.00 0.00 45.46 1.82
3099 3840 5.189342 TCTTTCTCTCCTCAGAGCATGAATT 59.811 40.000 0.00 0.00 45.46 2.17
3100 3841 4.715792 TCTTTCTCTCCTCAGAGCATGAAT 59.284 41.667 0.00 0.00 45.46 2.57
3101 3842 4.092279 TCTTTCTCTCCTCAGAGCATGAA 58.908 43.478 0.00 0.00 45.46 2.57
3102 3843 3.706183 TCTTTCTCTCCTCAGAGCATGA 58.294 45.455 0.00 0.00 45.46 3.07
3103 3844 4.468765 TTCTTTCTCTCCTCAGAGCATG 57.531 45.455 0.00 0.00 45.46 4.06
3104 3845 5.248020 TCTTTTCTTTCTCTCCTCAGAGCAT 59.752 40.000 0.00 0.00 45.46 3.79
3105 3846 4.590647 TCTTTTCTTTCTCTCCTCAGAGCA 59.409 41.667 0.00 0.00 45.46 4.26
3106 3847 5.146010 TCTTTTCTTTCTCTCCTCAGAGC 57.854 43.478 0.00 0.00 45.46 4.09
3108 3849 4.590647 TGCTCTTTTCTTTCTCTCCTCAGA 59.409 41.667 0.00 0.00 0.00 3.27
3109 3850 4.690280 GTGCTCTTTTCTTTCTCTCCTCAG 59.310 45.833 0.00 0.00 0.00 3.35
3110 3851 4.503991 GGTGCTCTTTTCTTTCTCTCCTCA 60.504 45.833 0.00 0.00 0.00 3.86
3111 3852 4.000325 GGTGCTCTTTTCTTTCTCTCCTC 59.000 47.826 0.00 0.00 0.00 3.71
3112 3853 3.392616 TGGTGCTCTTTTCTTTCTCTCCT 59.607 43.478 0.00 0.00 0.00 3.69
3113 3854 3.500299 GTGGTGCTCTTTTCTTTCTCTCC 59.500 47.826 0.00 0.00 0.00 3.71
3114 3855 4.213059 CAGTGGTGCTCTTTTCTTTCTCTC 59.787 45.833 0.00 0.00 0.00 3.20
3115 3856 4.133078 CAGTGGTGCTCTTTTCTTTCTCT 58.867 43.478 0.00 0.00 0.00 3.10
3116 3857 4.480386 CAGTGGTGCTCTTTTCTTTCTC 57.520 45.455 0.00 0.00 0.00 2.87
3150 3891 3.911698 AGACAGCACGCGTCACCA 61.912 61.111 9.86 0.00 35.77 4.17
3157 3898 0.319555 TTACTGGACAGACAGCACGC 60.320 55.000 6.29 0.00 42.21 5.34
3187 3928 8.693504 GCAAATATGATTGTGAAATAATGACCG 58.306 33.333 0.00 0.00 32.80 4.79
3196 3937 8.741841 TCATTCTCTGCAAATATGATTGTGAAA 58.258 29.630 0.00 0.00 32.80 2.69
3199 3940 9.529325 AAATCATTCTCTGCAAATATGATTGTG 57.471 29.630 18.72 1.74 42.18 3.33
3266 4007 1.792115 GGCCATGAATCATTTCCCCA 58.208 50.000 0.00 0.00 0.00 4.96
3281 4023 2.684001 AAAATCAGATACGACGGCCA 57.316 45.000 2.24 0.00 0.00 5.36
3282 4024 3.714391 ACTAAAATCAGATACGACGGCC 58.286 45.455 0.00 0.00 0.00 6.13
3283 4025 4.206609 GTGACTAAAATCAGATACGACGGC 59.793 45.833 0.00 0.00 0.00 5.68
3284 4026 5.337554 TGTGACTAAAATCAGATACGACGG 58.662 41.667 0.00 0.00 0.00 4.79
3285 4027 6.691388 TCATGTGACTAAAATCAGATACGACG 59.309 38.462 0.00 0.00 31.16 5.12
3286 4028 7.987268 TCATGTGACTAAAATCAGATACGAC 57.013 36.000 0.00 0.00 31.16 4.34
3302 4044 3.244353 CCCCCTGAGTCATATCATGTGAC 60.244 52.174 6.42 6.42 44.85 3.67
3303 4045 2.974794 CCCCCTGAGTCATATCATGTGA 59.025 50.000 0.00 0.00 0.00 3.58
3304 4046 2.551721 GCCCCCTGAGTCATATCATGTG 60.552 54.545 0.00 0.00 0.00 3.21
3305 4047 1.701847 GCCCCCTGAGTCATATCATGT 59.298 52.381 0.00 0.00 0.00 3.21
3306 4048 1.701292 TGCCCCCTGAGTCATATCATG 59.299 52.381 0.00 0.00 0.00 3.07
3307 4049 2.107204 GTTGCCCCCTGAGTCATATCAT 59.893 50.000 0.00 0.00 0.00 2.45
3308 4050 1.490490 GTTGCCCCCTGAGTCATATCA 59.510 52.381 0.00 0.00 0.00 2.15
3309 4051 1.541233 CGTTGCCCCCTGAGTCATATC 60.541 57.143 0.00 0.00 0.00 1.63
3310 4052 0.469917 CGTTGCCCCCTGAGTCATAT 59.530 55.000 0.00 0.00 0.00 1.78
3311 4053 0.907704 ACGTTGCCCCCTGAGTCATA 60.908 55.000 0.00 0.00 0.00 2.15
3312 4054 0.907704 TACGTTGCCCCCTGAGTCAT 60.908 55.000 0.00 0.00 0.00 3.06
3313 4055 1.534476 TACGTTGCCCCCTGAGTCA 60.534 57.895 0.00 0.00 0.00 3.41
3314 4056 1.079336 GTACGTTGCCCCCTGAGTC 60.079 63.158 0.00 0.00 0.00 3.36
3315 4057 0.251922 TAGTACGTTGCCCCCTGAGT 60.252 55.000 0.00 0.00 0.00 3.41
3316 4058 0.175073 GTAGTACGTTGCCCCCTGAG 59.825 60.000 0.00 0.00 0.00 3.35
3317 4059 1.259840 GGTAGTACGTTGCCCCCTGA 61.260 60.000 0.00 0.00 0.00 3.86
3318 4060 1.219935 GGTAGTACGTTGCCCCCTG 59.780 63.158 0.00 0.00 0.00 4.45
3319 4061 0.336048 TAGGTAGTACGTTGCCCCCT 59.664 55.000 0.00 0.00 0.00 4.79
3320 4062 0.749049 CTAGGTAGTACGTTGCCCCC 59.251 60.000 0.00 0.00 0.00 5.40
3321 4063 1.478631 ACTAGGTAGTACGTTGCCCC 58.521 55.000 0.00 0.00 34.13 5.80
3322 4064 3.599730 AAACTAGGTAGTACGTTGCCC 57.400 47.619 0.00 0.00 34.99 5.36
3323 4065 5.567138 TCTAAACTAGGTAGTACGTTGCC 57.433 43.478 0.00 0.00 34.99 4.52
3324 4066 8.378421 CAAAATCTAAACTAGGTAGTACGTTGC 58.622 37.037 0.00 0.00 34.99 4.17
3325 4067 8.378421 GCAAAATCTAAACTAGGTAGTACGTTG 58.622 37.037 0.00 1.94 34.99 4.10
3326 4068 8.090214 TGCAAAATCTAAACTAGGTAGTACGTT 58.910 33.333 0.00 0.00 34.99 3.99
3327 4069 7.605449 TGCAAAATCTAAACTAGGTAGTACGT 58.395 34.615 0.00 0.00 34.99 3.57
3328 4070 8.470040 TTGCAAAATCTAAACTAGGTAGTACG 57.530 34.615 0.00 0.00 34.99 3.67
3331 4073 9.515226 TCAATTGCAAAATCTAAACTAGGTAGT 57.485 29.630 1.71 0.00 38.39 2.73
3332 4074 9.994432 CTCAATTGCAAAATCTAAACTAGGTAG 57.006 33.333 1.71 0.00 0.00 3.18
3333 4075 8.458843 GCTCAATTGCAAAATCTAAACTAGGTA 58.541 33.333 1.71 0.00 0.00 3.08
3334 4076 7.315890 GCTCAATTGCAAAATCTAAACTAGGT 58.684 34.615 1.71 0.00 0.00 3.08
3335 4077 6.753744 GGCTCAATTGCAAAATCTAAACTAGG 59.246 38.462 1.71 0.00 34.04 3.02
3336 4078 7.542025 AGGCTCAATTGCAAAATCTAAACTAG 58.458 34.615 1.71 0.00 34.04 2.57
3337 4079 7.466746 AGGCTCAATTGCAAAATCTAAACTA 57.533 32.000 1.71 0.00 34.04 2.24
3338 4080 6.350629 AGGCTCAATTGCAAAATCTAAACT 57.649 33.333 1.71 0.00 34.04 2.66
3339 4081 7.041848 ACAAAGGCTCAATTGCAAAATCTAAAC 60.042 33.333 1.71 0.00 34.04 2.01
3340 4082 6.991531 ACAAAGGCTCAATTGCAAAATCTAAA 59.008 30.769 1.71 0.00 34.04 1.85
3341 4083 6.523840 ACAAAGGCTCAATTGCAAAATCTAA 58.476 32.000 1.71 0.00 34.04 2.10
3342 4084 6.100404 ACAAAGGCTCAATTGCAAAATCTA 57.900 33.333 1.71 0.00 34.04 1.98
3343 4085 4.964593 ACAAAGGCTCAATTGCAAAATCT 58.035 34.783 1.71 0.00 34.04 2.40
3344 4086 5.678132 AACAAAGGCTCAATTGCAAAATC 57.322 34.783 1.71 0.00 34.04 2.17
3345 4087 6.054295 TGTAACAAAGGCTCAATTGCAAAAT 58.946 32.000 1.71 0.00 34.04 1.82
3346 4088 5.423015 TGTAACAAAGGCTCAATTGCAAAA 58.577 33.333 1.71 0.00 34.04 2.44
3347 4089 5.016051 TGTAACAAAGGCTCAATTGCAAA 57.984 34.783 1.71 0.00 34.04 3.68
3348 4090 4.662468 TGTAACAAAGGCTCAATTGCAA 57.338 36.364 0.00 0.00 34.04 4.08
3349 4091 4.662468 TTGTAACAAAGGCTCAATTGCA 57.338 36.364 0.00 0.00 34.04 4.08
3350 4092 7.650834 TTAATTGTAACAAAGGCTCAATTGC 57.349 32.000 15.77 3.66 38.55 3.56
3351 4093 8.495148 GGTTTAATTGTAACAAAGGCTCAATTG 58.505 33.333 15.77 0.00 38.55 2.32
3352 4094 8.428852 AGGTTTAATTGTAACAAAGGCTCAATT 58.571 29.630 12.41 12.41 40.32 2.32
3353 4095 7.872483 CAGGTTTAATTGTAACAAAGGCTCAAT 59.128 33.333 0.00 0.00 0.00 2.57
3354 4096 7.206687 CAGGTTTAATTGTAACAAAGGCTCAA 58.793 34.615 0.00 0.00 0.00 3.02
3355 4097 6.239176 CCAGGTTTAATTGTAACAAAGGCTCA 60.239 38.462 0.00 0.00 0.00 4.26
3356 4098 6.156519 CCAGGTTTAATTGTAACAAAGGCTC 58.843 40.000 0.00 0.00 0.00 4.70
3357 4099 5.510690 GCCAGGTTTAATTGTAACAAAGGCT 60.511 40.000 17.52 0.00 36.33 4.58
3358 4100 4.688879 GCCAGGTTTAATTGTAACAAAGGC 59.311 41.667 13.56 13.56 33.95 4.35
3359 4101 5.221541 TGGCCAGGTTTAATTGTAACAAAGG 60.222 40.000 0.00 6.58 0.00 3.11
3360 4102 5.848406 TGGCCAGGTTTAATTGTAACAAAG 58.152 37.500 0.00 0.00 0.00 2.77
3361 4103 5.871396 TGGCCAGGTTTAATTGTAACAAA 57.129 34.783 0.00 0.00 0.00 2.83
3362 4104 5.279708 CCATGGCCAGGTTTAATTGTAACAA 60.280 40.000 17.55 0.00 0.00 2.83
3363 4105 4.221703 CCATGGCCAGGTTTAATTGTAACA 59.778 41.667 17.55 0.00 0.00 2.41
3364 4106 4.382577 CCCATGGCCAGGTTTAATTGTAAC 60.383 45.833 17.55 0.00 0.00 2.50
3365 4107 3.772025 CCCATGGCCAGGTTTAATTGTAA 59.228 43.478 17.55 0.00 0.00 2.41
3366 4108 3.370104 CCCATGGCCAGGTTTAATTGTA 58.630 45.455 17.55 0.00 0.00 2.41
3367 4109 2.187100 CCCATGGCCAGGTTTAATTGT 58.813 47.619 17.55 0.00 0.00 2.71
3368 4110 1.134431 GCCCATGGCCAGGTTTAATTG 60.134 52.381 17.55 4.03 44.06 2.32
3369 4111 1.203237 GCCCATGGCCAGGTTTAATT 58.797 50.000 17.55 0.00 44.06 1.40
3370 4112 2.914908 GCCCATGGCCAGGTTTAAT 58.085 52.632 17.55 0.00 44.06 1.40
3371 4113 4.451544 GCCCATGGCCAGGTTTAA 57.548 55.556 17.55 0.00 44.06 1.52
3421 4163 3.659089 GACCCATGGACACGGTCGG 62.659 68.421 15.22 0.00 36.97 4.79
3422 4164 2.125673 GACCCATGGACACGGTCG 60.126 66.667 15.22 0.00 36.97 4.79
3423 4165 2.125673 CGACCCATGGACACGGTC 60.126 66.667 15.22 10.66 42.27 4.79
3424 4166 3.702048 CCGACCCATGGACACGGT 61.702 66.667 25.12 11.91 38.97 4.83
3425 4167 4.467084 CCCGACCCATGGACACGG 62.467 72.222 25.92 25.92 42.67 4.94
3427 4169 3.268103 AAGCCCGACCCATGGACAC 62.268 63.158 15.22 2.92 0.00 3.67
3428 4170 2.933287 AAGCCCGACCCATGGACA 60.933 61.111 15.22 0.00 0.00 4.02
3429 4171 2.438434 CAAGCCCGACCCATGGAC 60.438 66.667 15.22 6.05 0.00 4.02
3430 4172 3.727258 CCAAGCCCGACCCATGGA 61.727 66.667 15.22 0.00 32.82 3.41
3431 4173 4.820744 CCCAAGCCCGACCCATGG 62.821 72.222 4.14 4.14 0.00 3.66
3435 4177 3.699134 CTAAGCCCAAGCCCGACCC 62.699 68.421 0.00 0.00 41.25 4.46
3436 4178 1.984288 ATCTAAGCCCAAGCCCGACC 61.984 60.000 0.00 0.00 41.25 4.79
3437 4179 0.107165 AATCTAAGCCCAAGCCCGAC 60.107 55.000 0.00 0.00 41.25 4.79
3438 4180 0.623723 AAATCTAAGCCCAAGCCCGA 59.376 50.000 0.00 0.00 41.25 5.14
3439 4181 1.025041 GAAATCTAAGCCCAAGCCCG 58.975 55.000 0.00 0.00 41.25 6.13
3440 4182 2.143876 TGAAATCTAAGCCCAAGCCC 57.856 50.000 0.00 0.00 41.25 5.19
3441 4183 3.790152 CTTGAAATCTAAGCCCAAGCC 57.210 47.619 0.00 0.00 41.25 4.35
3448 4190 2.159184 GCCTTGGGCTTGAAATCTAAGC 60.159 50.000 0.80 0.00 46.69 3.09
3449 4191 3.790152 GCCTTGGGCTTGAAATCTAAG 57.210 47.619 0.80 0.00 46.69 2.18
3472 4214 3.133365 AATATGACAGGGGCCGGCC 62.133 63.158 38.57 38.57 0.00 6.13
3473 4215 1.600916 GAATATGACAGGGGCCGGC 60.601 63.158 21.18 21.18 0.00 6.13
3474 4216 0.401738 ATGAATATGACAGGGGCCGG 59.598 55.000 0.00 0.00 0.00 6.13
3475 4217 1.072173 TCATGAATATGACAGGGGCCG 59.928 52.381 0.00 0.00 38.37 6.13
3476 4218 2.107204 ACTCATGAATATGACAGGGGCC 59.893 50.000 0.00 0.00 38.37 5.80
3477 4219 3.498774 ACTCATGAATATGACAGGGGC 57.501 47.619 0.00 0.00 38.37 5.80
3478 4220 5.466728 CGTTAACTCATGAATATGACAGGGG 59.533 44.000 3.71 0.00 38.37 4.79
3479 4221 6.280643 TCGTTAACTCATGAATATGACAGGG 58.719 40.000 3.71 0.00 38.37 4.45
3480 4222 7.706607 TCTTCGTTAACTCATGAATATGACAGG 59.293 37.037 3.71 0.00 38.37 4.00
3481 4223 8.634475 TCTTCGTTAACTCATGAATATGACAG 57.366 34.615 3.71 0.00 38.37 3.51
3482 4224 7.706607 CCTCTTCGTTAACTCATGAATATGACA 59.293 37.037 3.71 0.00 38.37 3.58
3483 4225 7.306866 GCCTCTTCGTTAACTCATGAATATGAC 60.307 40.741 3.71 0.00 38.37 3.06
3484 4226 6.701841 GCCTCTTCGTTAACTCATGAATATGA 59.298 38.462 3.71 0.00 40.92 2.15
3485 4227 6.073548 GGCCTCTTCGTTAACTCATGAATATG 60.074 42.308 3.71 0.00 35.57 1.78
3486 4228 5.992217 GGCCTCTTCGTTAACTCATGAATAT 59.008 40.000 3.71 0.00 0.00 1.28
3487 4229 5.357257 GGCCTCTTCGTTAACTCATGAATA 58.643 41.667 3.71 0.00 0.00 1.75
3488 4230 4.192317 GGCCTCTTCGTTAACTCATGAAT 58.808 43.478 3.71 0.00 0.00 2.57
3489 4231 3.596214 GGCCTCTTCGTTAACTCATGAA 58.404 45.455 3.71 0.00 0.00 2.57
3490 4232 2.093658 GGGCCTCTTCGTTAACTCATGA 60.094 50.000 0.84 0.00 0.00 3.07
3491 4233 2.280628 GGGCCTCTTCGTTAACTCATG 58.719 52.381 0.84 0.00 0.00 3.07
3492 4234 1.134788 CGGGCCTCTTCGTTAACTCAT 60.135 52.381 0.84 0.00 0.00 2.90
3493 4235 0.245539 CGGGCCTCTTCGTTAACTCA 59.754 55.000 0.84 0.00 0.00 3.41
3494 4236 0.459759 CCGGGCCTCTTCGTTAACTC 60.460 60.000 0.84 0.00 0.00 3.01
3495 4237 1.595357 CCGGGCCTCTTCGTTAACT 59.405 57.895 0.84 0.00 0.00 2.24
3496 4238 2.104859 GCCGGGCCTCTTCGTTAAC 61.105 63.158 8.12 0.00 0.00 2.01
3497 4239 2.266689 GCCGGGCCTCTTCGTTAA 59.733 61.111 8.12 0.00 0.00 2.01
3498 4240 3.777910 GGCCGGGCCTCTTCGTTA 61.778 66.667 30.86 0.00 46.69 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.