Multiple sequence alignment - TraesCS2A01G444100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G444100 chr2A 100.000 8469 0 0 1 8469 694458492 694450024 0.000000e+00 15640.0
1 TraesCS2A01G444100 chr2D 96.619 4525 89 17 3192 7683 554129391 554124898 0.000000e+00 7450.0
2 TraesCS2A01G444100 chr2D 91.126 879 35 16 804 1679 554130932 554130094 0.000000e+00 1151.0
3 TraesCS2A01G444100 chr2D 95.376 519 20 3 2593 3110 554129905 554129390 0.000000e+00 822.0
4 TraesCS2A01G444100 chr2D 89.773 176 18 0 17 192 554304538 554304363 8.550000e-55 226.0
5 TraesCS2A01G444100 chr2D 87.097 155 4 2 6260 6398 200944088 200944242 2.450000e-35 161.0
6 TraesCS2A01G444100 chr2D 87.097 155 4 2 6260 6398 604426046 604426200 2.450000e-35 161.0
7 TraesCS2A01G444100 chr2D 93.023 86 4 1 1700 1783 554129981 554129896 3.210000e-24 124.0
8 TraesCS2A01G444100 chr2B 95.397 3476 101 25 4398 7842 660124206 660120759 0.000000e+00 5478.0
9 TraesCS2A01G444100 chr2B 97.638 889 13 3 3192 4077 660126245 660125362 0.000000e+00 1519.0
10 TraesCS2A01G444100 chr2B 88.154 1013 66 25 804 1783 660127743 660126752 0.000000e+00 1157.0
11 TraesCS2A01G444100 chr2B 94.444 522 21 3 2593 3110 660126761 660126244 0.000000e+00 797.0
12 TraesCS2A01G444100 chr2B 90.672 536 25 8 250 775 735824417 735824937 0.000000e+00 689.0
13 TraesCS2A01G444100 chr2B 85.549 519 71 4 7918 8433 660120593 660120076 2.690000e-149 540.0
14 TraesCS2A01G444100 chr2B 78.988 771 116 29 5040 5793 659948569 659947828 1.280000e-132 484.0
15 TraesCS2A01G444100 chr2B 95.906 171 7 0 4072 4242 660124369 660124199 2.330000e-70 278.0
16 TraesCS2A01G444100 chr2B 79.245 424 67 18 4631 5042 659949038 659948624 8.370000e-70 276.0
17 TraesCS2A01G444100 chr2B 89.773 176 18 0 17 192 660128261 660128086 8.550000e-55 226.0
18 TraesCS2A01G444100 chr2B 94.681 94 5 0 3107 3200 448906682 448906775 6.850000e-31 147.0
19 TraesCS2A01G444100 chr4A 95.818 813 29 4 1784 2591 580660513 580659701 0.000000e+00 1308.0
20 TraesCS2A01G444100 chr4A 100.000 40 0 0 6260 6299 503313439 503313478 3.280000e-09 75.0
21 TraesCS2A01G444100 chr3A 94.859 817 36 4 1781 2591 8582041 8582857 0.000000e+00 1271.0
22 TraesCS2A01G444100 chr3A 95.407 479 15 4 250 727 22592018 22591546 0.000000e+00 756.0
23 TraesCS2A01G444100 chr3A 97.143 105 3 0 695 799 22591551 22591447 2.430000e-40 178.0
24 TraesCS2A01G444100 chr1A 96.244 772 28 1 1776 2546 565327253 565326482 0.000000e+00 1264.0
25 TraesCS2A01G444100 chr1A 93.826 745 32 2 1860 2591 52540833 52540090 0.000000e+00 1109.0
26 TraesCS2A01G444100 chr1A 97.110 173 4 1 4230 4402 393948622 393948451 2.990000e-74 291.0
27 TraesCS2A01G444100 chr1A 87.662 154 4 3 6263 6401 94755038 94754885 1.890000e-36 165.0
28 TraesCS2A01G444100 chr6A 95.056 809 28 5 1784 2591 9535623 9534826 0.000000e+00 1262.0
29 TraesCS2A01G444100 chr6A 94.249 539 21 6 250 786 33325091 33325621 0.000000e+00 815.0
30 TraesCS2A01G444100 chr6A 95.192 520 15 5 249 760 14463109 14463626 0.000000e+00 813.0
31 TraesCS2A01G444100 chr1D 93.910 821 37 1 1784 2591 38599576 38598756 0.000000e+00 1227.0
32 TraesCS2A01G444100 chr1D 96.571 175 6 0 4226 4400 238940207 238940381 2.990000e-74 291.0
33 TraesCS2A01G444100 chr1D 96.532 173 6 0 4235 4407 331539265 331539437 3.870000e-73 287.0
34 TraesCS2A01G444100 chr1D 86.452 155 5 5 6263 6401 275766742 275766588 1.140000e-33 156.0
35 TraesCS2A01G444100 chr1D 86.047 129 2 2 6260 6372 370173733 370173861 3.210000e-24 124.0
36 TraesCS2A01G444100 chr3D 93.826 826 31 4 1779 2591 418779852 418780670 0.000000e+00 1225.0
37 TraesCS2A01G444100 chr7A 93.820 809 35 4 1784 2592 533003893 533003100 0.000000e+00 1203.0
38 TraesCS2A01G444100 chr7A 97.096 551 11 2 250 799 669220699 669221245 0.000000e+00 924.0
39 TraesCS2A01G444100 chr7A 94.555 551 21 6 251 799 81618391 81618934 0.000000e+00 843.0
40 TraesCS2A01G444100 chr7A 96.703 91 3 0 3106 3196 692919186 692919276 1.470000e-32 152.0
41 TraesCS2A01G444100 chr7D 92.462 796 36 3 1809 2591 553495417 553496201 0.000000e+00 1116.0
42 TraesCS2A01G444100 chr7D 94.785 441 15 2 1778 2210 160632622 160633062 0.000000e+00 680.0
43 TraesCS2A01G444100 chr7D 86.452 155 5 2 6260 6398 381940873 381941027 1.140000e-33 156.0
44 TraesCS2A01G444100 chr4D 91.367 834 45 15 1784 2591 179850368 179849536 0.000000e+00 1116.0
45 TraesCS2A01G444100 chr4D 97.110 173 5 0 4235 4407 102042247 102042419 8.310000e-75 292.0
46 TraesCS2A01G444100 chr4D 94.681 94 5 0 3100 3193 320593726 320593819 6.850000e-31 147.0
47 TraesCS2A01G444100 chr4D 85.161 155 7 4 6263 6401 167128223 167128069 2.460000e-30 145.0
48 TraesCS2A01G444100 chr4D 93.617 94 6 0 3109 3202 64347445 64347352 3.190000e-29 141.0
49 TraesCS2A01G444100 chr4D 97.500 40 1 0 6260 6299 338897304 338897343 1.530000e-07 69.4
50 TraesCS2A01G444100 chr5A 96.680 512 12 2 250 760 33921052 33920545 0.000000e+00 846.0
51 TraesCS2A01G444100 chr4B 93.772 562 19 3 250 799 8559953 8560510 0.000000e+00 830.0
52 TraesCS2A01G444100 chr4B 87.097 155 4 2 6263 6401 209316935 209316781 2.450000e-35 161.0
53 TraesCS2A01G444100 chr4B 93.684 95 6 0 3106 3200 640017272 640017366 8.860000e-30 143.0
54 TraesCS2A01G444100 chr6D 95.465 441 9 4 1784 2213 136701738 136701298 0.000000e+00 693.0
55 TraesCS2A01G444100 chr6D 97.143 175 5 0 4229 4403 392897145 392896971 6.430000e-76 296.0
56 TraesCS2A01G444100 chr5D 95.216 439 12 3 1784 2213 307362231 307361793 0.000000e+00 686.0
57 TraesCS2A01G444100 chr5D 94.737 95 4 1 3103 3197 174620118 174620025 6.850000e-31 147.0
58 TraesCS2A01G444100 chr3B 92.973 370 21 2 250 618 445891534 445891169 1.250000e-147 534.0
59 TraesCS2A01G444100 chr3B 94.086 186 8 3 4228 4411 62970101 62969917 6.470000e-71 279.0
60 TraesCS2A01G444100 chr3B 91.429 105 9 0 648 752 445890833 445890729 2.460000e-30 145.0
61 TraesCS2A01G444100 chr7B 97.093 172 5 0 4235 4406 714316106 714315935 2.990000e-74 291.0
62 TraesCS2A01G444100 chr7B 96.703 91 3 0 3106 3196 680211519 680211609 1.470000e-32 152.0
63 TraesCS2A01G444100 chr7B 94.737 95 4 1 3101 3195 740996247 740996154 6.850000e-31 147.0
64 TraesCS2A01G444100 chr1B 95.000 180 8 1 4220 4399 318271458 318271636 1.800000e-71 281.0
65 TraesCS2A01G444100 chr1B 77.226 483 89 15 7917 8392 666077352 666076884 6.520000e-66 263.0
66 TraesCS2A01G444100 chrUn 87.097 155 4 2 6263 6401 45090111 45089957 2.450000e-35 161.0
67 TraesCS2A01G444100 chrUn 86.452 155 5 2 6263 6401 171040398 171040244 1.140000e-33 156.0
68 TraesCS2A01G444100 chr6B 74.055 397 93 10 8017 8405 37765822 37765428 4.090000e-33 154.0
69 TraesCS2A01G444100 chr5B 94.737 95 3 2 3109 3202 339905097 339905190 6.850000e-31 147.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G444100 chr2A 694450024 694458492 8468 True 15640.000000 15640 100.000000 1 8469 1 chr2A.!!$R1 8468
1 TraesCS2A01G444100 chr2D 554124898 554130932 6034 True 2386.750000 7450 94.036000 804 7683 4 chr2D.!!$R2 6879
2 TraesCS2A01G444100 chr2B 660120076 660128261 8185 True 1427.857143 5478 92.408714 17 8433 7 chr2B.!!$R2 8416
3 TraesCS2A01G444100 chr2B 735824417 735824937 520 False 689.000000 689 90.672000 250 775 1 chr2B.!!$F2 525
4 TraesCS2A01G444100 chr2B 659947828 659949038 1210 True 380.000000 484 79.116500 4631 5793 2 chr2B.!!$R1 1162
5 TraesCS2A01G444100 chr4A 580659701 580660513 812 True 1308.000000 1308 95.818000 1784 2591 1 chr4A.!!$R1 807
6 TraesCS2A01G444100 chr3A 8582041 8582857 816 False 1271.000000 1271 94.859000 1781 2591 1 chr3A.!!$F1 810
7 TraesCS2A01G444100 chr3A 22591447 22592018 571 True 467.000000 756 96.275000 250 799 2 chr3A.!!$R1 549
8 TraesCS2A01G444100 chr1A 565326482 565327253 771 True 1264.000000 1264 96.244000 1776 2546 1 chr1A.!!$R4 770
9 TraesCS2A01G444100 chr1A 52540090 52540833 743 True 1109.000000 1109 93.826000 1860 2591 1 chr1A.!!$R1 731
10 TraesCS2A01G444100 chr6A 9534826 9535623 797 True 1262.000000 1262 95.056000 1784 2591 1 chr6A.!!$R1 807
11 TraesCS2A01G444100 chr6A 33325091 33325621 530 False 815.000000 815 94.249000 250 786 1 chr6A.!!$F2 536
12 TraesCS2A01G444100 chr6A 14463109 14463626 517 False 813.000000 813 95.192000 249 760 1 chr6A.!!$F1 511
13 TraesCS2A01G444100 chr1D 38598756 38599576 820 True 1227.000000 1227 93.910000 1784 2591 1 chr1D.!!$R1 807
14 TraesCS2A01G444100 chr3D 418779852 418780670 818 False 1225.000000 1225 93.826000 1779 2591 1 chr3D.!!$F1 812
15 TraesCS2A01G444100 chr7A 533003100 533003893 793 True 1203.000000 1203 93.820000 1784 2592 1 chr7A.!!$R1 808
16 TraesCS2A01G444100 chr7A 669220699 669221245 546 False 924.000000 924 97.096000 250 799 1 chr7A.!!$F2 549
17 TraesCS2A01G444100 chr7A 81618391 81618934 543 False 843.000000 843 94.555000 251 799 1 chr7A.!!$F1 548
18 TraesCS2A01G444100 chr7D 553495417 553496201 784 False 1116.000000 1116 92.462000 1809 2591 1 chr7D.!!$F3 782
19 TraesCS2A01G444100 chr4D 179849536 179850368 832 True 1116.000000 1116 91.367000 1784 2591 1 chr4D.!!$R3 807
20 TraesCS2A01G444100 chr5A 33920545 33921052 507 True 846.000000 846 96.680000 250 760 1 chr5A.!!$R1 510
21 TraesCS2A01G444100 chr4B 8559953 8560510 557 False 830.000000 830 93.772000 250 799 1 chr4B.!!$F1 549
22 TraesCS2A01G444100 chr3B 445890729 445891534 805 True 339.500000 534 92.201000 250 752 2 chr3B.!!$R2 502

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
201 202 0.036952 ATCGTAGCACAACTGCAGCT 60.037 50.000 15.27 8.26 46.97 4.24 F
222 223 0.040692 CTCCTCGAACACAACGTCGA 60.041 55.000 0.00 0.00 0.00 4.20 F
226 227 0.659417 TCGAACACAACGTCGAGCTC 60.659 55.000 2.73 2.73 0.00 4.09 F
1045 1570 0.755686 CTTCCCCGAGAATCCAGAGG 59.244 60.000 0.00 0.00 32.82 3.69 F
2295 3015 0.177141 GCTAGGTACGCATCCACCAA 59.823 55.000 0.00 0.00 37.28 3.67 F
2889 3613 0.731417 CCATCTTCTTCTGCAAGGCG 59.269 55.000 0.00 0.00 0.00 5.52 F
3220 3945 1.638070 TGGCCATACACCTTTGGATGA 59.362 47.619 0.00 0.00 46.09 2.92 F
4625 6517 0.119358 AGCTAAAGGAGGACCAGGGT 59.881 55.000 0.00 0.00 38.94 4.34 F
4626 6518 1.365028 AGCTAAAGGAGGACCAGGGTA 59.635 52.381 0.00 0.00 38.94 3.69 F
4627 6519 1.763545 GCTAAAGGAGGACCAGGGTAG 59.236 57.143 0.00 0.00 38.94 3.18 F
6505 8483 1.072331 AGGAAGTGGCGACAGTGAAAT 59.928 47.619 0.00 0.00 45.37 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1583 2118 1.367346 TCACAGGGGGCTTAACATCA 58.633 50.000 0.00 0.00 0.00 3.07 R
2209 2909 1.817447 GCTACTACTCCTCACCAACGT 59.183 52.381 0.00 0.00 0.00 3.99 R
2288 3008 4.263572 CAGGCGGTGGTTGGTGGA 62.264 66.667 0.00 0.00 0.00 4.02 R
3003 3728 0.517316 CAACCGACAACCTGCTAAGC 59.483 55.000 0.00 0.00 0.00 3.09 R
4087 5813 1.462283 GTATGTGCTGTGACAGTGCTG 59.538 52.381 14.82 0.00 33.43 4.41 R
4383 6109 2.246849 AGGTAATACTCCCTCCGTTCCT 59.753 50.000 0.00 0.00 0.00 3.36 R
5192 7167 1.537202 GTCATTGTGACACCTCTTGCC 59.463 52.381 2.45 0.00 46.22 4.52 R
5709 7684 3.107402 AGAGAGAGGCTACAACATCCA 57.893 47.619 0.00 0.00 0.00 3.41 R
6505 8483 4.765339 TGAACTAGAGTCTCGTTCAATGGA 59.235 41.667 28.54 12.21 41.11 3.41 R
6558 8536 6.524101 TCAATTCCCTGTAAAATAACTGCC 57.476 37.500 0.00 0.00 0.00 4.85 R
7935 10001 0.032815 TGCGTCGACCATCAGACAAA 59.967 50.000 10.58 0.00 37.23 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 4.216257 CCATCCAACACTGGTTAGAACTTG 59.784 45.833 0.00 0.00 43.97 3.16
34 35 2.869801 CAACACTGGTTAGAACTTGCGA 59.130 45.455 0.00 0.00 34.87 5.10
45 46 2.143122 GAACTTGCGAACACATGGAGA 58.857 47.619 0.00 0.00 0.00 3.71
80 81 2.125912 CGAGACTCCAACCCGCAG 60.126 66.667 0.00 0.00 0.00 5.18
93 94 4.260194 CGCAGGACACAACATCGA 57.740 55.556 0.00 0.00 0.00 3.59
130 131 2.154462 CAAAAGCTGGGAGACGTCAAT 58.846 47.619 19.50 0.00 0.00 2.57
148 149 2.430921 GTCGTCGACCCTGCACAG 60.431 66.667 14.60 0.00 0.00 3.66
169 170 1.260538 TGCAGCTCCTCCTCGAACAT 61.261 55.000 0.00 0.00 0.00 2.71
182 183 1.511305 GAACATGTCGAGCTCCCGA 59.489 57.895 8.47 0.00 36.06 5.14
192 193 1.725557 GAGCTCCCGATCGTAGCACA 61.726 60.000 29.93 4.23 38.75 4.57
193 194 1.141019 GCTCCCGATCGTAGCACAA 59.859 57.895 26.03 1.31 36.26 3.33
195 196 0.456221 CTCCCGATCGTAGCACAACT 59.544 55.000 15.09 0.00 0.00 3.16
196 197 0.172578 TCCCGATCGTAGCACAACTG 59.827 55.000 15.09 0.00 0.00 3.16
197 198 1.421410 CCCGATCGTAGCACAACTGC 61.421 60.000 15.09 0.00 44.63 4.40
198 199 0.735978 CCGATCGTAGCACAACTGCA 60.736 55.000 15.09 0.00 46.97 4.41
199 200 0.642291 CGATCGTAGCACAACTGCAG 59.358 55.000 13.48 13.48 46.97 4.41
200 201 0.371645 GATCGTAGCACAACTGCAGC 59.628 55.000 15.27 0.00 46.97 5.25
201 202 0.036952 ATCGTAGCACAACTGCAGCT 60.037 50.000 15.27 8.26 46.97 4.24
202 203 0.667487 TCGTAGCACAACTGCAGCTC 60.667 55.000 15.27 0.00 46.97 4.09
203 204 1.630244 CGTAGCACAACTGCAGCTCC 61.630 60.000 15.27 0.00 46.97 4.70
204 205 0.321122 GTAGCACAACTGCAGCTCCT 60.321 55.000 15.27 5.94 46.97 3.69
205 206 0.036952 TAGCACAACTGCAGCTCCTC 60.037 55.000 15.27 0.30 46.97 3.71
206 207 2.331132 GCACAACTGCAGCTCCTCC 61.331 63.158 15.27 0.00 43.62 4.30
207 208 1.374190 CACAACTGCAGCTCCTCCT 59.626 57.895 15.27 0.00 0.00 3.69
208 209 0.673022 CACAACTGCAGCTCCTCCTC 60.673 60.000 15.27 0.00 0.00 3.71
209 210 1.447489 CAACTGCAGCTCCTCCTCG 60.447 63.158 15.27 0.00 0.00 4.63
210 211 1.607756 AACTGCAGCTCCTCCTCGA 60.608 57.895 15.27 0.00 0.00 4.04
211 212 1.188219 AACTGCAGCTCCTCCTCGAA 61.188 55.000 15.27 0.00 0.00 3.71
212 213 1.153667 CTGCAGCTCCTCCTCGAAC 60.154 63.158 0.00 0.00 0.00 3.95
213 214 1.881903 CTGCAGCTCCTCCTCGAACA 61.882 60.000 0.00 0.00 0.00 3.18
214 215 1.446966 GCAGCTCCTCCTCGAACAC 60.447 63.158 0.00 0.00 0.00 3.32
215 216 1.967535 CAGCTCCTCCTCGAACACA 59.032 57.895 0.00 0.00 0.00 3.72
216 217 0.318441 CAGCTCCTCCTCGAACACAA 59.682 55.000 0.00 0.00 0.00 3.33
217 218 0.318762 AGCTCCTCCTCGAACACAAC 59.681 55.000 0.00 0.00 0.00 3.32
218 219 1.009389 GCTCCTCCTCGAACACAACG 61.009 60.000 0.00 0.00 0.00 4.10
219 220 0.314302 CTCCTCCTCGAACACAACGT 59.686 55.000 0.00 0.00 0.00 3.99
220 221 0.313043 TCCTCCTCGAACACAACGTC 59.687 55.000 0.00 0.00 0.00 4.34
221 222 1.002250 CCTCCTCGAACACAACGTCG 61.002 60.000 0.00 0.00 0.00 5.12
222 223 0.040692 CTCCTCGAACACAACGTCGA 60.041 55.000 0.00 0.00 0.00 4.20
224 225 1.767388 CTCGAACACAACGTCGAGC 59.233 57.895 9.81 0.00 43.98 5.03
225 226 0.660595 CTCGAACACAACGTCGAGCT 60.661 55.000 9.81 0.00 43.98 4.09
226 227 0.659417 TCGAACACAACGTCGAGCTC 60.659 55.000 2.73 2.73 0.00 4.09
227 228 1.606350 CGAACACAACGTCGAGCTCC 61.606 60.000 8.47 0.00 0.00 4.70
228 229 1.606350 GAACACAACGTCGAGCTCCG 61.606 60.000 8.47 9.56 40.25 4.63
229 230 2.050351 CACAACGTCGAGCTCCGT 60.050 61.111 11.61 11.61 39.32 4.69
230 231 2.081212 CACAACGTCGAGCTCCGTC 61.081 63.158 16.69 5.79 36.04 4.79
536 549 1.804151 CAAGTCGCGGGAGAATGAAAA 59.196 47.619 6.13 0.00 0.00 2.29
537 550 2.178912 AGTCGCGGGAGAATGAAAAA 57.821 45.000 6.13 0.00 0.00 1.94
538 551 2.711542 AGTCGCGGGAGAATGAAAAAT 58.288 42.857 6.13 0.00 0.00 1.82
539 552 3.081804 AGTCGCGGGAGAATGAAAAATT 58.918 40.909 6.13 0.00 0.00 1.82
610 633 3.515502 CCCTTCTCCACACACTTCATCTA 59.484 47.826 0.00 0.00 0.00 1.98
611 634 4.020218 CCCTTCTCCACACACTTCATCTAA 60.020 45.833 0.00 0.00 0.00 2.10
799 1311 1.067762 CCCCTATCCCCTGCATCCAA 61.068 60.000 0.00 0.00 0.00 3.53
800 1312 0.852842 CCCTATCCCCTGCATCCAAA 59.147 55.000 0.00 0.00 0.00 3.28
801 1313 1.479389 CCCTATCCCCTGCATCCAAAC 60.479 57.143 0.00 0.00 0.00 2.93
802 1314 1.479389 CCTATCCCCTGCATCCAAACC 60.479 57.143 0.00 0.00 0.00 3.27
896 1408 5.615544 CGTTTCTAACCCGATACGATACGAT 60.616 44.000 0.00 0.00 39.59 3.73
897 1409 6.401047 CGTTTCTAACCCGATACGATACGATA 60.401 42.308 0.00 0.00 39.59 2.92
898 1410 6.408858 TTCTAACCCGATACGATACGATAC 57.591 41.667 0.00 0.00 0.00 2.24
899 1411 3.729526 AACCCGATACGATACGATACG 57.270 47.619 0.00 0.00 0.00 3.06
979 1499 4.437587 CTTCCCCTGGCCCTGCTG 62.438 72.222 0.00 0.00 0.00 4.41
1045 1570 0.755686 CTTCCCCGAGAATCCAGAGG 59.244 60.000 0.00 0.00 32.82 3.69
1056 1581 2.755439 ATCCAGAGGCGGGATAGGGG 62.755 65.000 6.60 0.00 43.27 4.79
1058 1583 3.117648 AGAGGCGGGATAGGGGGA 61.118 66.667 0.00 0.00 0.00 4.81
1093 1618 0.814812 GGCAGAGCTCAGCATCTTCC 60.815 60.000 29.30 9.86 0.00 3.46
1097 1622 1.015868 GAGCTCAGCATCTTCCAAGC 58.984 55.000 9.40 0.00 0.00 4.01
1505 2037 3.423154 CGCAAGGTTGTCTCCGGC 61.423 66.667 0.00 0.00 0.00 6.13
1550 2082 6.705302 TGCTGATTATGAGGATTATGAGGAC 58.295 40.000 0.00 0.00 0.00 3.85
1553 2085 7.632462 GCTGATTATGAGGATTATGAGGACGAT 60.632 40.741 0.00 0.00 0.00 3.73
1583 2118 7.492077 TGATTATGATGAGACTGGATATGCT 57.508 36.000 0.00 0.00 0.00 3.79
1617 2152 2.338500 CTGTGAAGGAGAAAGGTACGC 58.662 52.381 0.00 0.00 0.00 4.42
1624 2159 3.184003 GAAAGGTACGCGGCCGTC 61.184 66.667 28.70 18.03 46.39 4.79
1645 2180 3.191581 TCTGTGCAAGCTACTAGTCTGTC 59.808 47.826 0.00 0.00 0.00 3.51
1652 2187 2.937799 AGCTACTAGTCTGTCTGCGTAC 59.062 50.000 0.00 0.00 0.00 3.67
1655 2190 1.085091 CTAGTCTGTCTGCGTACCGT 58.915 55.000 0.00 0.00 0.00 4.83
1656 2191 2.274437 CTAGTCTGTCTGCGTACCGTA 58.726 52.381 0.00 0.00 0.00 4.02
1736 2365 3.333029 TCTGATCAACTCCGCAATTGA 57.667 42.857 10.34 0.00 39.09 2.57
1760 2389 2.961526 TTTTAAGTTGTTTGGCGGCA 57.038 40.000 7.97 7.97 0.00 5.69
1832 2462 1.344065 ATCGGGCCAATACGGATACA 58.656 50.000 4.39 0.00 36.56 2.29
2041 2675 3.367292 CGCATTTCCATTTAGTGTTGCCT 60.367 43.478 0.00 0.00 0.00 4.75
2077 2712 6.688637 TTCTCTATGATTTGAACATGGCTG 57.311 37.500 0.00 0.00 0.00 4.85
2209 2909 2.040412 GGGCAGGAAAAAGGAGAAGAGA 59.960 50.000 0.00 0.00 0.00 3.10
2295 3015 0.177141 GCTAGGTACGCATCCACCAA 59.823 55.000 0.00 0.00 37.28 3.67
2298 3018 1.003112 GGTACGCATCCACCAACCA 60.003 57.895 0.00 0.00 34.77 3.67
2609 3329 7.915293 TTCGAGGTTGTAATGTTCATGTTAT 57.085 32.000 0.00 0.00 0.00 1.89
2638 3358 2.772077 TTCCGTTATGCTTGCTACCA 57.228 45.000 0.00 0.00 0.00 3.25
2759 3483 2.338577 AATGATTCCCTGCTCTTCCG 57.661 50.000 0.00 0.00 0.00 4.30
2843 3567 2.182181 CCGCGGATGCACATGTGAT 61.182 57.895 29.80 18.46 42.97 3.06
2883 3607 6.348868 CCTTTTAAGTGTCCATCTTCTTCTGC 60.349 42.308 0.00 0.00 0.00 4.26
2889 3613 0.731417 CCATCTTCTTCTGCAAGGCG 59.269 55.000 0.00 0.00 0.00 5.52
2906 3630 5.465390 GCAAGGCGTTGTTGTCTATATGATA 59.535 40.000 19.45 0.00 35.92 2.15
2907 3631 6.018262 GCAAGGCGTTGTTGTCTATATGATAA 60.018 38.462 19.45 0.00 35.92 1.75
2980 3705 8.587950 CAAAACTTACTCACAAAATACGCAAAA 58.412 29.630 0.00 0.00 0.00 2.44
3118 3843 8.871629 TCTAAGCTTCTAATATACTCCCTCTG 57.128 38.462 0.00 0.00 0.00 3.35
3119 3844 8.449625 TCTAAGCTTCTAATATACTCCCTCTGT 58.550 37.037 0.00 0.00 0.00 3.41
3120 3845 9.742144 CTAAGCTTCTAATATACTCCCTCTGTA 57.258 37.037 0.00 0.00 0.00 2.74
3122 3847 9.435570 AAGCTTCTAATATACTCCCTCTGTAAA 57.564 33.333 0.00 0.00 0.00 2.01
3123 3848 9.084533 AGCTTCTAATATACTCCCTCTGTAAAG 57.915 37.037 0.00 0.00 0.00 1.85
3124 3849 9.080097 GCTTCTAATATACTCCCTCTGTAAAGA 57.920 37.037 0.00 0.00 0.00 2.52
3135 3860 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
3136 3861 8.319057 TCCCTCTGTAAAGAAATATAAGAGCA 57.681 34.615 0.00 0.00 0.00 4.26
3137 3862 8.938883 TCCCTCTGTAAAGAAATATAAGAGCAT 58.061 33.333 0.00 0.00 0.00 3.79
3138 3863 9.566432 CCCTCTGTAAAGAAATATAAGAGCATT 57.434 33.333 0.00 0.00 0.00 3.56
3179 3904 9.678260 AGTGATCTAAATGCTCTTACATTTCTT 57.322 29.630 5.81 0.00 44.89 2.52
3184 3909 8.879759 TCTAAATGCTCTTACATTTCTTTACGG 58.120 33.333 5.81 0.00 44.89 4.02
3185 3910 7.681939 AAATGCTCTTACATTTCTTTACGGA 57.318 32.000 0.00 0.00 44.89 4.69
3186 3911 6.910536 ATGCTCTTACATTTCTTTACGGAG 57.089 37.500 0.00 0.00 0.00 4.63
3187 3912 5.175859 TGCTCTTACATTTCTTTACGGAGG 58.824 41.667 0.00 0.00 0.00 4.30
3188 3913 4.571176 GCTCTTACATTTCTTTACGGAGGG 59.429 45.833 0.00 0.00 0.00 4.30
3189 3914 5.626116 GCTCTTACATTTCTTTACGGAGGGA 60.626 44.000 0.00 0.00 0.00 4.20
3190 3915 5.974108 TCTTACATTTCTTTACGGAGGGAG 58.026 41.667 0.00 0.00 0.00 4.30
3220 3945 1.638070 TGGCCATACACCTTTGGATGA 59.362 47.619 0.00 0.00 46.09 2.92
3260 3985 8.902806 TGGAATATGTAGTTTCTTTAGGCATTG 58.097 33.333 0.00 0.00 0.00 2.82
3261 3986 8.903820 GGAATATGTAGTTTCTTTAGGCATTGT 58.096 33.333 0.00 0.00 0.00 2.71
3262 3987 9.722056 GAATATGTAGTTTCTTTAGGCATTGTG 57.278 33.333 0.00 0.00 0.00 3.33
3263 3988 8.807948 ATATGTAGTTTCTTTAGGCATTGTGT 57.192 30.769 0.00 0.00 0.00 3.72
3264 3989 6.952773 TGTAGTTTCTTTAGGCATTGTGTT 57.047 33.333 0.00 0.00 0.00 3.32
3551 4276 9.685276 TTCTGATTATTGGCATATACATAAGGG 57.315 33.333 0.00 0.00 0.00 3.95
3685 4410 6.088350 CAGCGAAGACTTCTACTACAAACTTC 59.912 42.308 13.22 0.00 0.00 3.01
4087 5813 8.863049 CCATCTATAAATAAAATTTGGATGCGC 58.137 33.333 0.00 0.00 0.00 6.09
4103 5829 2.635899 GCAGCACTGTCACAGCAC 59.364 61.111 4.13 0.00 34.37 4.40
4234 5960 2.303022 AGGTTGCAGTGCTGTACATACT 59.697 45.455 17.60 1.25 0.00 2.12
4235 5961 3.513912 AGGTTGCAGTGCTGTACATACTA 59.486 43.478 17.60 0.00 0.00 1.82
4236 5962 3.617263 GGTTGCAGTGCTGTACATACTAC 59.383 47.826 17.60 7.77 0.00 2.73
4237 5963 4.495422 GTTGCAGTGCTGTACATACTACT 58.505 43.478 17.60 4.65 0.00 2.57
4238 5964 4.371855 TGCAGTGCTGTACATACTACTC 57.628 45.455 17.60 6.25 0.00 2.59
4239 5965 3.130516 TGCAGTGCTGTACATACTACTCC 59.869 47.826 17.60 0.00 0.00 3.85
4240 5966 3.491104 GCAGTGCTGTACATACTACTCCC 60.491 52.174 8.18 0.00 0.00 4.30
4241 5967 3.954904 CAGTGCTGTACATACTACTCCCT 59.045 47.826 11.30 0.00 0.00 4.20
4242 5968 4.036971 CAGTGCTGTACATACTACTCCCTC 59.963 50.000 11.30 0.00 0.00 4.30
4243 5969 4.079672 AGTGCTGTACATACTACTCCCTCT 60.080 45.833 10.27 0.00 0.00 3.69
4244 5970 4.036971 GTGCTGTACATACTACTCCCTCTG 59.963 50.000 0.00 0.00 0.00 3.35
4245 5971 4.208746 GCTGTACATACTACTCCCTCTGT 58.791 47.826 0.00 0.00 0.00 3.41
4246 5972 4.645588 GCTGTACATACTACTCCCTCTGTT 59.354 45.833 0.00 0.00 0.00 3.16
4247 5973 5.221087 GCTGTACATACTACTCCCTCTGTTC 60.221 48.000 0.00 0.00 0.00 3.18
4248 5974 5.198965 TGTACATACTACTCCCTCTGTTCC 58.801 45.833 0.00 0.00 0.00 3.62
4249 5975 4.611564 ACATACTACTCCCTCTGTTCCT 57.388 45.455 0.00 0.00 0.00 3.36
4250 5976 5.728937 ACATACTACTCCCTCTGTTCCTA 57.271 43.478 0.00 0.00 0.00 2.94
4251 5977 6.088541 ACATACTACTCCCTCTGTTCCTAA 57.911 41.667 0.00 0.00 0.00 2.69
4252 5978 6.500336 ACATACTACTCCCTCTGTTCCTAAA 58.500 40.000 0.00 0.00 0.00 1.85
4253 5979 7.133483 ACATACTACTCCCTCTGTTCCTAAAT 58.867 38.462 0.00 0.00 0.00 1.40
4254 5980 8.287350 ACATACTACTCCCTCTGTTCCTAAATA 58.713 37.037 0.00 0.00 0.00 1.40
4255 5981 9.315363 CATACTACTCCCTCTGTTCCTAAATAT 57.685 37.037 0.00 0.00 0.00 1.28
4256 5982 9.900112 ATACTACTCCCTCTGTTCCTAAATATT 57.100 33.333 0.00 0.00 0.00 1.28
4257 5983 8.625467 ACTACTCCCTCTGTTCCTAAATATTT 57.375 34.615 5.89 5.89 0.00 1.40
4258 5984 8.487028 ACTACTCCCTCTGTTCCTAAATATTTG 58.513 37.037 11.05 1.40 0.00 2.32
4259 5985 7.272144 ACTCCCTCTGTTCCTAAATATTTGT 57.728 36.000 11.05 0.00 0.00 2.83
4260 5986 7.339482 ACTCCCTCTGTTCCTAAATATTTGTC 58.661 38.462 11.05 0.00 0.00 3.18
4261 5987 7.182930 ACTCCCTCTGTTCCTAAATATTTGTCT 59.817 37.037 11.05 0.00 0.00 3.41
4262 5988 7.928873 TCCCTCTGTTCCTAAATATTTGTCTT 58.071 34.615 11.05 0.00 0.00 3.01
4263 5989 8.390921 TCCCTCTGTTCCTAAATATTTGTCTTT 58.609 33.333 11.05 0.00 0.00 2.52
4264 5990 9.025041 CCCTCTGTTCCTAAATATTTGTCTTTT 57.975 33.333 11.05 0.00 0.00 2.27
4282 6008 9.965824 TTGTCTTTTTAGAGATTTCAAATGGAC 57.034 29.630 0.00 0.00 0.00 4.02
4283 6009 8.576442 TGTCTTTTTAGAGATTTCAAATGGACC 58.424 33.333 0.00 0.00 0.00 4.46
4284 6010 8.576442 GTCTTTTTAGAGATTTCAAATGGACCA 58.424 33.333 0.00 0.00 0.00 4.02
4285 6011 8.576442 TCTTTTTAGAGATTTCAAATGGACCAC 58.424 33.333 0.00 0.00 0.00 4.16
4286 6012 6.834168 TTTAGAGATTTCAAATGGACCACC 57.166 37.500 0.00 0.00 0.00 4.61
4299 6025 3.445987 TGGACCACCACATACAGATGTA 58.554 45.455 0.00 0.00 44.82 2.29
4300 6026 4.037222 TGGACCACCACATACAGATGTAT 58.963 43.478 0.00 0.00 44.82 2.29
4301 6027 5.212745 TGGACCACCACATACAGATGTATA 58.787 41.667 5.21 0.00 44.82 1.47
4302 6028 5.843969 TGGACCACCACATACAGATGTATAT 59.156 40.000 5.21 0.00 44.82 0.86
4303 6029 7.013834 TGGACCACCACATACAGATGTATATA 58.986 38.462 5.21 0.00 44.82 0.86
4304 6030 7.178451 TGGACCACCACATACAGATGTATATAG 59.822 40.741 5.21 0.75 44.82 1.31
4305 6031 7.396339 GGACCACCACATACAGATGTATATAGA 59.604 40.741 5.21 0.00 44.82 1.98
4306 6032 8.123639 ACCACCACATACAGATGTATATAGAC 57.876 38.462 5.21 0.00 44.82 2.59
4307 6033 7.728532 ACCACCACATACAGATGTATATAGACA 59.271 37.037 2.07 2.07 44.82 3.41
4308 6034 8.753133 CCACCACATACAGATGTATATAGACAT 58.247 37.037 12.70 12.70 44.82 3.06
4340 6066 7.559590 AGTGTATATTCACTCATTTTGCTCC 57.440 36.000 9.03 0.00 44.07 4.70
4341 6067 6.258727 AGTGTATATTCACTCATTTTGCTCCG 59.741 38.462 9.03 0.00 44.07 4.63
4342 6068 6.037172 GTGTATATTCACTCATTTTGCTCCGT 59.963 38.462 5.30 0.00 35.68 4.69
4343 6069 7.223971 GTGTATATTCACTCATTTTGCTCCGTA 59.776 37.037 5.30 0.00 35.68 4.02
4344 6070 7.931407 TGTATATTCACTCATTTTGCTCCGTAT 59.069 33.333 0.00 0.00 0.00 3.06
4345 6071 4.944962 TTCACTCATTTTGCTCCGTATG 57.055 40.909 0.00 0.00 0.00 2.39
4346 6072 3.937814 TCACTCATTTTGCTCCGTATGT 58.062 40.909 0.00 0.00 0.00 2.29
4347 6073 5.079689 TCACTCATTTTGCTCCGTATGTA 57.920 39.130 0.00 0.00 0.00 2.29
4348 6074 5.109210 TCACTCATTTTGCTCCGTATGTAG 58.891 41.667 0.00 0.00 0.00 2.74
4349 6075 4.870426 CACTCATTTTGCTCCGTATGTAGT 59.130 41.667 0.00 0.00 0.00 2.73
4350 6076 5.005779 CACTCATTTTGCTCCGTATGTAGTC 59.994 44.000 0.00 0.00 0.00 2.59
4351 6077 5.079689 TCATTTTGCTCCGTATGTAGTCA 57.920 39.130 0.00 0.00 0.00 3.41
4352 6078 4.868171 TCATTTTGCTCCGTATGTAGTCAC 59.132 41.667 0.00 0.00 0.00 3.67
4353 6079 4.530710 TTTTGCTCCGTATGTAGTCACT 57.469 40.909 0.00 0.00 0.00 3.41
4354 6080 4.530710 TTTGCTCCGTATGTAGTCACTT 57.469 40.909 0.00 0.00 0.00 3.16
4355 6081 3.503827 TGCTCCGTATGTAGTCACTTG 57.496 47.619 0.00 0.00 0.00 3.16
4356 6082 2.823747 TGCTCCGTATGTAGTCACTTGT 59.176 45.455 0.00 0.00 0.00 3.16
4357 6083 3.257375 TGCTCCGTATGTAGTCACTTGTT 59.743 43.478 0.00 0.00 0.00 2.83
4358 6084 3.612860 GCTCCGTATGTAGTCACTTGTTG 59.387 47.826 0.00 0.00 0.00 3.33
4359 6085 4.617530 GCTCCGTATGTAGTCACTTGTTGA 60.618 45.833 0.00 0.00 0.00 3.18
4360 6086 5.456548 TCCGTATGTAGTCACTTGTTGAA 57.543 39.130 0.00 0.00 35.39 2.69
4361 6087 5.845103 TCCGTATGTAGTCACTTGTTGAAA 58.155 37.500 0.00 0.00 35.39 2.69
4362 6088 6.460781 TCCGTATGTAGTCACTTGTTGAAAT 58.539 36.000 0.00 0.00 35.39 2.17
4363 6089 6.588756 TCCGTATGTAGTCACTTGTTGAAATC 59.411 38.462 0.00 0.00 35.39 2.17
4364 6090 6.590292 CCGTATGTAGTCACTTGTTGAAATCT 59.410 38.462 0.00 0.00 35.39 2.40
4365 6091 7.201444 CCGTATGTAGTCACTTGTTGAAATCTC 60.201 40.741 0.00 0.00 35.39 2.75
4366 6092 7.542477 CGTATGTAGTCACTTGTTGAAATCTCT 59.458 37.037 0.00 0.00 35.39 3.10
4367 6093 9.856488 GTATGTAGTCACTTGTTGAAATCTCTA 57.144 33.333 0.00 0.00 35.39 2.43
4368 6094 8.994429 ATGTAGTCACTTGTTGAAATCTCTAG 57.006 34.615 0.00 0.00 35.39 2.43
4369 6095 8.178313 TGTAGTCACTTGTTGAAATCTCTAGA 57.822 34.615 0.00 0.00 35.39 2.43
4370 6096 8.638873 TGTAGTCACTTGTTGAAATCTCTAGAA 58.361 33.333 0.00 0.00 35.39 2.10
4371 6097 9.477484 GTAGTCACTTGTTGAAATCTCTAGAAA 57.523 33.333 0.00 0.00 35.39 2.52
4372 6098 8.600449 AGTCACTTGTTGAAATCTCTAGAAAG 57.400 34.615 0.00 0.00 35.39 2.62
4373 6099 8.424918 AGTCACTTGTTGAAATCTCTAGAAAGA 58.575 33.333 0.00 0.00 35.39 2.52
4374 6100 8.491950 GTCACTTGTTGAAATCTCTAGAAAGAC 58.508 37.037 0.00 0.00 35.39 3.01
4375 6101 8.204160 TCACTTGTTGAAATCTCTAGAAAGACA 58.796 33.333 0.00 0.00 0.00 3.41
4376 6102 8.830580 CACTTGTTGAAATCTCTAGAAAGACAA 58.169 33.333 0.00 0.00 0.00 3.18
4377 6103 9.396022 ACTTGTTGAAATCTCTAGAAAGACAAA 57.604 29.630 0.00 0.00 0.00 2.83
4390 6116 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
4391 6117 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
4392 6118 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
4393 6119 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
4394 6120 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
4395 6121 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
4396 6122 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
4423 6313 5.153950 ACCTATTGTGAACTCTGTCCTTC 57.846 43.478 0.00 0.00 0.00 3.46
4506 6398 0.753867 TTCCACACAGTTGGCGTCTA 59.246 50.000 0.00 0.00 36.48 2.59
4625 6517 0.119358 AGCTAAAGGAGGACCAGGGT 59.881 55.000 0.00 0.00 38.94 4.34
4626 6518 1.365028 AGCTAAAGGAGGACCAGGGTA 59.635 52.381 0.00 0.00 38.94 3.69
4627 6519 1.763545 GCTAAAGGAGGACCAGGGTAG 59.236 57.143 0.00 0.00 38.94 3.18
4864 6768 8.461222 TGCTGTGACTTTTAAATATGGAATCTG 58.539 33.333 0.00 0.00 0.00 2.90
5192 7167 5.667539 TGGATGAGAGTACTGAAGAAAGG 57.332 43.478 0.00 0.00 0.00 3.11
5499 7474 5.470437 GCTATTGGGTACTCAAAAGATAGGC 59.530 44.000 13.19 5.71 0.00 3.93
5709 7684 2.508526 GGTGAATTTCTCCAGTGCAGT 58.491 47.619 11.69 0.00 30.74 4.40
5788 7763 8.801299 AGAGTGTTGATCTGTGGACATATATAG 58.199 37.037 0.00 0.00 0.00 1.31
5798 7773 6.894682 TGTGGACATATATAGTCTTGGCAAA 58.105 36.000 0.00 0.00 36.29 3.68
5885 7860 5.632764 CGTGTCTCTTGGATGCTATAGATTG 59.367 44.000 3.21 0.00 0.00 2.67
6250 8228 8.791327 TGATTTAGTGCTACAATGATCTTGAA 57.209 30.769 10.61 0.00 0.00 2.69
6421 8399 3.863681 TTTTTGGAGACATGCACGC 57.136 47.368 0.00 0.00 42.32 5.34
6505 8483 1.072331 AGGAAGTGGCGACAGTGAAAT 59.928 47.619 0.00 0.00 45.37 2.17
6558 8536 1.073964 CGAGAGCTGGTGACAATGTG 58.926 55.000 0.00 0.00 42.06 3.21
6713 8691 9.753674 AATTCTCATTGGTTATCAGGTAAAGAA 57.246 29.630 0.00 0.00 0.00 2.52
6733 8711 7.961326 AAGAAATGTCATATAACCAAAGCCT 57.039 32.000 0.00 0.00 0.00 4.58
6757 8735 4.697352 TGTTTGATTAGCTTCTTCTCCAGC 59.303 41.667 0.00 0.00 36.16 4.85
6758 8736 4.558226 TTGATTAGCTTCTTCTCCAGCA 57.442 40.909 0.00 0.00 38.61 4.41
6923 8901 2.268762 TGCTGTTGTGCAGGTAATCA 57.731 45.000 0.00 0.00 45.14 2.57
6935 8913 4.043073 GCAGGTAATCAACGAGTACTAGC 58.957 47.826 2.52 3.30 34.19 3.42
6939 8917 4.261530 GGTAATCAACGAGTACTAGCCCTC 60.262 50.000 2.52 0.00 34.19 4.30
6951 8929 1.476891 CTAGCCCTCGTGAACAGCTAA 59.523 52.381 0.00 0.00 35.74 3.09
7163 9144 1.340889 GAGGCAGGATCAGCACTAGAG 59.659 57.143 10.94 0.00 0.00 2.43
7184 9165 1.602605 CCCCTGTCGTCCAAAACCC 60.603 63.158 0.00 0.00 0.00 4.11
7187 9168 1.964373 CTGTCGTCCAAAACCCGGG 60.964 63.158 22.25 22.25 0.00 5.73
7219 9202 3.198872 GCCTTGCAAGATCAGTACCTAC 58.801 50.000 28.05 0.00 0.00 3.18
7221 9204 3.448686 CTTGCAAGATCAGTACCTACCG 58.551 50.000 22.31 0.00 0.00 4.02
7223 9206 2.426024 TGCAAGATCAGTACCTACCGAC 59.574 50.000 0.00 0.00 0.00 4.79
7265 9270 4.354587 CTGGCAAGTTTTGTTCTCTGTTC 58.645 43.478 0.00 0.00 0.00 3.18
7276 9281 2.720758 CTCTGTTCGCTTGTCGCCG 61.721 63.158 0.00 0.00 38.27 6.46
7354 9359 6.318648 TGAATGACTTGTATACCTTGAATGCC 59.681 38.462 0.00 0.00 0.00 4.40
7489 9501 9.072460 AGGGTGAATCAATCATATATATTCCCA 57.928 33.333 0.00 0.00 40.97 4.37
7566 9578 3.933332 CCCTCGTTCACCTTTAGCTAAAG 59.067 47.826 31.13 31.13 41.70 1.85
7578 9590 6.378848 ACCTTTAGCTAAAGTTTCACAAACCA 59.621 34.615 33.56 5.26 42.34 3.67
7579 9591 7.093684 ACCTTTAGCTAAAGTTTCACAAACCAA 60.094 33.333 33.56 4.68 42.34 3.67
7636 9648 3.706086 GGGCTTATTCAACCAACATGGAT 59.294 43.478 2.85 0.00 40.96 3.41
7652 9664 1.253100 GGATCCGGAGTCCAGAGATC 58.747 60.000 21.31 19.00 35.76 2.75
7694 9706 2.760385 GCGTCTAGGCAGGGGAGT 60.760 66.667 0.00 0.00 0.00 3.85
7710 9722 2.535012 GAGTTAGTATGCTCCAGCCC 57.465 55.000 0.00 0.00 41.18 5.19
7711 9723 1.762957 GAGTTAGTATGCTCCAGCCCA 59.237 52.381 0.00 0.00 41.18 5.36
7712 9724 1.765314 AGTTAGTATGCTCCAGCCCAG 59.235 52.381 0.00 0.00 41.18 4.45
7713 9725 1.762957 GTTAGTATGCTCCAGCCCAGA 59.237 52.381 0.00 0.00 41.18 3.86
7726 9738 1.241990 GCCCAGAAACTCCGGGAAAC 61.242 60.000 0.00 0.00 43.21 2.78
7727 9739 0.953960 CCCAGAAACTCCGGGAAACG 60.954 60.000 0.00 0.00 43.21 3.60
7743 9755 4.803426 CGGCTCCAGCGAGGTGAC 62.803 72.222 3.61 0.92 43.26 3.67
7771 9783 2.425312 GTGATCTTCTGCCTTCTCTCGA 59.575 50.000 0.00 0.00 0.00 4.04
7773 9785 1.911057 TCTTCTGCCTTCTCTCGACA 58.089 50.000 0.00 0.00 0.00 4.35
7777 9789 0.108898 CTGCCTTCTCTCGACACCAG 60.109 60.000 0.00 0.00 0.00 4.00
7778 9790 1.446966 GCCTTCTCTCGACACCAGC 60.447 63.158 0.00 0.00 0.00 4.85
7779 9791 1.153939 CCTTCTCTCGACACCAGCG 60.154 63.158 0.00 0.00 0.00 5.18
7780 9792 1.587043 CCTTCTCTCGACACCAGCGA 61.587 60.000 0.00 0.00 36.23 4.93
7781 9793 0.455295 CTTCTCTCGACACCAGCGAC 60.455 60.000 0.00 0.00 33.71 5.19
7782 9794 2.183858 TTCTCTCGACACCAGCGACG 62.184 60.000 0.00 0.00 33.71 5.12
7783 9795 2.967473 CTCTCGACACCAGCGACGT 61.967 63.158 0.00 0.00 33.71 4.34
7784 9796 2.502080 CTCGACACCAGCGACGTC 60.502 66.667 5.18 5.18 33.71 4.34
7794 9806 4.773117 GCGACGTCGTGGGTCCTC 62.773 72.222 35.48 15.22 42.22 3.71
7802 9814 1.977544 CGTGGGTCCTCGTCCTCTT 60.978 63.158 3.60 0.00 0.00 2.85
7808 9820 0.109689 GTCCTCGTCCTCTTCGTGTG 60.110 60.000 0.00 0.00 0.00 3.82
7810 9822 0.314302 CCTCGTCCTCTTCGTGTGTT 59.686 55.000 0.00 0.00 0.00 3.32
7819 9831 0.710567 CTTCGTGTGTTGCTCTAGCG 59.289 55.000 0.00 0.00 45.83 4.26
7821 9833 1.080772 CGTGTGTTGCTCTAGCGGA 60.081 57.895 0.00 0.00 45.83 5.54
7824 9836 1.211969 GTGTTGCTCTAGCGGACGA 59.788 57.895 0.00 0.00 45.83 4.20
7832 9844 4.051167 TAGCGGACGAGGACCCCA 62.051 66.667 0.00 0.00 0.00 4.96
7837 9903 2.214920 GGACGAGGACCCCAACAGT 61.215 63.158 0.00 0.00 0.00 3.55
7842 9908 0.890996 GAGGACCCCAACAGTTGCTG 60.891 60.000 7.88 3.44 37.52 4.41
7851 9917 2.029739 CCAACAGTTGCTGCATCAATGA 60.030 45.455 6.22 0.00 34.37 2.57
7854 9920 2.165641 ACAGTTGCTGCATCAATGATGG 59.834 45.455 22.95 9.79 40.10 3.51
7862 9928 0.863799 CATCAATGATGGAGACGGCG 59.136 55.000 15.09 4.80 36.51 6.46
7863 9929 0.882042 ATCAATGATGGAGACGGCGC 60.882 55.000 6.90 0.00 0.00 6.53
7864 9930 2.203070 AATGATGGAGACGGCGCC 60.203 61.111 19.07 19.07 34.13 6.53
7880 9946 1.268032 GCGCCACGTTGGAATAATCTG 60.268 52.381 0.00 0.00 40.96 2.90
7884 9950 3.625764 GCCACGTTGGAATAATCTGCTTA 59.374 43.478 8.04 0.00 40.96 3.09
7892 9958 7.467811 CGTTGGAATAATCTGCTTATGCTCTTT 60.468 37.037 1.96 0.00 40.48 2.52
7893 9959 7.502120 TGGAATAATCTGCTTATGCTCTTTC 57.498 36.000 1.96 0.00 40.48 2.62
7895 9961 7.443575 TGGAATAATCTGCTTATGCTCTTTCTC 59.556 37.037 1.96 0.00 40.48 2.87
7903 9969 2.906691 ATGCTCTTTCTCCATCTCGG 57.093 50.000 0.00 0.00 0.00 4.63
7905 9971 2.735151 TGCTCTTTCTCCATCTCGGTA 58.265 47.619 0.00 0.00 35.57 4.02
7907 9973 2.544903 GCTCTTTCTCCATCTCGGTAGC 60.545 54.545 0.00 0.00 35.57 3.58
7918 9984 2.372264 TCTCGGTAGCGTTCTAATGGT 58.628 47.619 14.79 0.00 0.00 3.55
7919 9985 2.357009 TCTCGGTAGCGTTCTAATGGTC 59.643 50.000 14.79 0.00 0.00 4.02
7920 9986 2.358267 CTCGGTAGCGTTCTAATGGTCT 59.642 50.000 14.79 0.00 0.00 3.85
7921 9987 2.756760 TCGGTAGCGTTCTAATGGTCTT 59.243 45.455 14.79 0.00 0.00 3.01
7924 9990 4.113354 GGTAGCGTTCTAATGGTCTTCAG 58.887 47.826 0.00 0.00 0.00 3.02
7925 9991 4.142227 GGTAGCGTTCTAATGGTCTTCAGA 60.142 45.833 0.00 0.00 0.00 3.27
7926 9992 4.744795 AGCGTTCTAATGGTCTTCAGAT 57.255 40.909 0.00 0.00 0.00 2.90
7927 9993 4.688021 AGCGTTCTAATGGTCTTCAGATC 58.312 43.478 0.00 0.00 0.00 2.75
7928 9994 3.804873 GCGTTCTAATGGTCTTCAGATCC 59.195 47.826 0.00 0.00 0.00 3.36
7930 9996 4.440250 CGTTCTAATGGTCTTCAGATCCGT 60.440 45.833 0.00 0.00 0.00 4.69
7932 9998 4.278310 TCTAATGGTCTTCAGATCCGTGA 58.722 43.478 0.00 0.00 0.00 4.35
7933 9999 3.533606 AATGGTCTTCAGATCCGTGAG 57.466 47.619 0.00 0.00 0.00 3.51
7934 10000 2.215942 TGGTCTTCAGATCCGTGAGA 57.784 50.000 0.00 0.00 0.00 3.27
7935 10001 2.739943 TGGTCTTCAGATCCGTGAGAT 58.260 47.619 0.00 0.00 38.17 2.75
7956 10063 1.080772 GTCTGATGGTCGACGCACA 60.081 57.895 9.92 8.10 0.00 4.57
7977 10084 1.375013 GCTTTCTCGGGTGGCGTTA 60.375 57.895 0.00 0.00 0.00 3.18
7992 10099 2.400399 GCGTTAGCATCGCCTATTACA 58.600 47.619 8.55 0.00 46.61 2.41
8005 10112 4.378046 CGCCTATTACAGTTGTGTTTGGTC 60.378 45.833 0.00 0.00 38.19 4.02
8007 10114 5.240844 GCCTATTACAGTTGTGTTTGGTCTT 59.759 40.000 0.00 0.00 38.19 3.01
8013 10120 3.993081 CAGTTGTGTTTGGTCTTTTGCAA 59.007 39.130 0.00 0.00 0.00 4.08
8021 10128 3.237268 TGGTCTTTTGCAATAGGGTGT 57.763 42.857 15.65 0.00 0.00 4.16
8043 10150 1.506262 GATGGCGGCAAACAACGAT 59.494 52.632 18.31 0.00 0.00 3.73
8061 10168 2.668457 CGATGTTCCTCTTCTTTGACCG 59.332 50.000 0.00 0.00 0.00 4.79
8065 10172 0.038526 TCCTCTTCTTTGACCGCGTC 60.039 55.000 4.92 3.35 0.00 5.19
8085 10192 0.798776 GGATGAAGTTGACGGTGCTG 59.201 55.000 0.00 0.00 0.00 4.41
8090 10197 1.728971 GAAGTTGACGGTGCTGAGATG 59.271 52.381 0.00 0.00 0.00 2.90
8093 10200 2.299013 AGTTGACGGTGCTGAGATGTAA 59.701 45.455 0.00 0.00 0.00 2.41
8095 10202 1.616374 TGACGGTGCTGAGATGTAACA 59.384 47.619 0.00 0.00 0.00 2.41
8113 10220 6.640518 TGTAACAGACATGAGAAAGTATCCC 58.359 40.000 0.00 0.00 31.20 3.85
8114 10221 5.762179 AACAGACATGAGAAAGTATCCCA 57.238 39.130 0.00 0.00 0.00 4.37
8117 10224 4.036518 AGACATGAGAAAGTATCCCAGCT 58.963 43.478 0.00 0.00 0.00 4.24
8125 10232 0.972983 AGTATCCCAGCTGACGTGCT 60.973 55.000 17.39 6.14 45.18 4.40
8137 10244 1.269883 TGACGTGCTAAAAAGCCTCGA 60.270 47.619 15.16 0.00 35.99 4.04
8139 10246 2.000447 ACGTGCTAAAAAGCCTCGATC 59.000 47.619 15.16 0.00 35.99 3.69
8140 10247 1.005975 CGTGCTAAAAAGCCTCGATCG 60.006 52.381 9.36 9.36 34.81 3.69
8141 10248 1.006832 TGCTAAAAAGCCTCGATCGC 58.993 50.000 11.09 0.00 0.00 4.58
8143 10250 1.278238 CTAAAAAGCCTCGATCGCGT 58.722 50.000 11.09 0.00 38.98 6.01
8164 10271 0.297820 GCTTACAGCGATTCCGTTCG 59.702 55.000 0.00 0.00 41.99 3.95
8188 10295 2.552743 GGCCCGAAAAGCATCCTTATAC 59.447 50.000 0.00 0.00 0.00 1.47
8189 10296 2.552743 GCCCGAAAAGCATCCTTATACC 59.447 50.000 0.00 0.00 0.00 2.73
8195 10302 5.365619 GAAAAGCATCCTTATACCCGAAGA 58.634 41.667 0.00 0.00 0.00 2.87
8198 10305 3.003480 GCATCCTTATACCCGAAGATGC 58.997 50.000 6.99 6.99 33.98 3.91
8229 10336 3.909427 ATGGGTATGATGGCAAATCCT 57.091 42.857 0.00 0.00 35.26 3.24
8230 10337 3.686227 TGGGTATGATGGCAAATCCTT 57.314 42.857 0.00 0.00 35.26 3.36
8232 10339 4.360889 TGGGTATGATGGCAAATCCTTTT 58.639 39.130 0.00 0.00 35.26 2.27
8252 10359 0.383949 TTTTTCAGTGTTGCCTCGGC 59.616 50.000 0.00 0.00 42.35 5.54
8260 10367 3.611674 TTGCCTCGGCGACTGTGA 61.612 61.111 4.99 0.00 45.51 3.58
8265 10372 1.009389 CCTCGGCGACTGTGAAAGAC 61.009 60.000 4.99 0.00 0.00 3.01
8271 10378 1.935300 GCGACTGTGAAAGACGATGGT 60.935 52.381 0.00 0.00 45.25 3.55
8276 10383 1.068474 GTGAAAGACGATGGTGGACG 58.932 55.000 0.00 0.00 0.00 4.79
8290 10397 1.006571 GGACGACCTTTCAGCGTGA 60.007 57.895 0.00 0.00 38.51 4.35
8292 10399 0.596600 GACGACCTTTCAGCGTGACA 60.597 55.000 0.00 0.00 38.51 3.58
8301 10408 1.795768 TCAGCGTGACACAAGATTCC 58.204 50.000 6.37 0.00 0.00 3.01
8310 10417 1.899814 ACACAAGATTCCGCCAGAGTA 59.100 47.619 0.00 0.00 0.00 2.59
8321 10428 5.416271 TCCGCCAGAGTAAAATTCTAGTT 57.584 39.130 0.00 0.00 0.00 2.24
8322 10429 5.801380 TCCGCCAGAGTAAAATTCTAGTTT 58.199 37.500 0.00 0.00 0.00 2.66
8397 10504 8.803235 TCTCTTATAGTGACATTGTGTGTACTT 58.197 33.333 0.00 0.00 42.36 2.24
8399 10506 9.203421 TCTTATAGTGACATTGTGTGTACTTTG 57.797 33.333 0.00 0.00 42.36 2.77
8401 10508 5.484173 AGTGACATTGTGTGTACTTTGTG 57.516 39.130 0.00 0.00 42.36 3.33
8410 10517 1.532437 GTGTACTTTGTGTAACCCGGC 59.468 52.381 0.00 0.00 34.36 6.13
8414 10521 2.380941 ACTTTGTGTAACCCGGCTTTT 58.619 42.857 0.00 0.00 34.36 2.27
8433 10540 9.528018 CGGCTTTTTAATGAAATATATGTGGTT 57.472 29.630 0.00 0.00 0.00 3.67
8459 10566 0.673985 AAAAAGAAACTCCAGGCGGC 59.326 50.000 0.00 0.00 0.00 6.53
8460 10567 1.179174 AAAAGAAACTCCAGGCGGCC 61.179 55.000 12.11 12.11 0.00 6.13
8461 10568 3.901797 AAGAAACTCCAGGCGGCCG 62.902 63.158 24.05 24.05 0.00 6.13
8462 10569 4.699522 GAAACTCCAGGCGGCCGT 62.700 66.667 28.70 4.23 0.00 5.68
8463 10570 4.699522 AAACTCCAGGCGGCCGTC 62.700 66.667 25.39 25.39 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.001048 CAGTGTTGGATGGTTGCAGTG 60.001 52.381 0.00 0.00 0.00 3.66
1 2 1.321474 CAGTGTTGGATGGTTGCAGT 58.679 50.000 0.00 0.00 0.00 4.40
10 11 7.710511 TCGCAAGTTCTAACCAGTGTTGGAT 62.711 44.000 0.00 0.00 41.00 3.41
11 12 6.485412 TCGCAAGTTCTAACCAGTGTTGGA 62.485 45.833 0.00 0.00 42.85 3.53
12 13 4.295070 TCGCAAGTTCTAACCAGTGTTGG 61.295 47.826 0.00 0.00 44.70 3.77
13 14 2.869801 TCGCAAGTTCTAACCAGTGTTG 59.130 45.455 0.00 0.00 35.62 3.33
14 15 3.188159 TCGCAAGTTCTAACCAGTGTT 57.812 42.857 0.00 0.00 37.24 3.32
15 16 2.870411 GTTCGCAAGTTCTAACCAGTGT 59.130 45.455 0.00 0.00 39.48 3.55
22 23 3.734463 TCCATGTGTTCGCAAGTTCTAA 58.266 40.909 0.00 0.00 39.48 2.10
31 32 1.199789 TGCATTTCTCCATGTGTTCGC 59.800 47.619 0.00 0.00 0.00 4.70
34 35 4.669206 TTGTTGCATTTCTCCATGTGTT 57.331 36.364 0.00 0.00 0.00 3.32
63 64 2.125912 CTGCGGGTTGGAGTCTCG 60.126 66.667 0.00 0.00 0.00 4.04
80 81 1.060937 GCGCATCGATGTTGTGTCC 59.939 57.895 25.47 7.03 0.00 4.02
88 89 3.863543 TGTTGCGGCGCATCGATG 61.864 61.111 36.69 21.27 38.76 3.84
92 93 4.794241 GTCGTGTTGCGGCGCATC 62.794 66.667 36.69 33.02 38.76 3.91
125 126 1.352156 GCAGGGTCGACGACATTGAC 61.352 60.000 27.77 16.20 40.66 3.18
130 131 3.207547 CTGTGCAGGGTCGACGACA 62.208 63.158 27.77 5.66 33.68 4.35
148 149 3.011635 TTCGAGGAGGAGCTGCAGC 62.012 63.158 31.53 31.53 42.49 5.25
154 155 3.354131 GACATGTTCGAGGAGGAGC 57.646 57.895 0.00 0.00 0.00 4.70
192 193 1.188219 TTCGAGGAGGAGCTGCAGTT 61.188 55.000 16.64 9.79 0.00 3.16
193 194 1.607756 TTCGAGGAGGAGCTGCAGT 60.608 57.895 16.64 1.59 0.00 4.40
195 196 1.908299 TGTTCGAGGAGGAGCTGCA 60.908 57.895 8.35 0.00 0.00 4.41
196 197 1.446966 GTGTTCGAGGAGGAGCTGC 60.447 63.158 0.00 0.00 0.00 5.25
197 198 0.318441 TTGTGTTCGAGGAGGAGCTG 59.682 55.000 0.00 0.00 0.00 4.24
198 199 0.318762 GTTGTGTTCGAGGAGGAGCT 59.681 55.000 0.00 0.00 0.00 4.09
199 200 1.009389 CGTTGTGTTCGAGGAGGAGC 61.009 60.000 0.00 0.00 0.00 4.70
200 201 0.314302 ACGTTGTGTTCGAGGAGGAG 59.686 55.000 0.00 0.00 0.00 3.69
201 202 0.313043 GACGTTGTGTTCGAGGAGGA 59.687 55.000 0.00 0.00 0.00 3.71
202 203 1.002250 CGACGTTGTGTTCGAGGAGG 61.002 60.000 0.00 0.00 0.00 4.30
203 204 0.040692 TCGACGTTGTGTTCGAGGAG 60.041 55.000 1.96 0.00 0.00 3.69
204 205 0.040692 CTCGACGTTGTGTTCGAGGA 60.041 55.000 12.72 0.00 40.93 3.71
205 206 1.606350 GCTCGACGTTGTGTTCGAGG 61.606 60.000 19.55 5.94 42.88 4.63
206 207 0.660595 AGCTCGACGTTGTGTTCGAG 60.661 55.000 15.39 15.39 44.16 4.04
207 208 0.659417 GAGCTCGACGTTGTGTTCGA 60.659 55.000 0.00 0.00 0.00 3.71
208 209 1.606350 GGAGCTCGACGTTGTGTTCG 61.606 60.000 7.83 1.20 0.00 3.95
209 210 1.606350 CGGAGCTCGACGTTGTGTTC 61.606 60.000 7.83 11.90 42.43 3.18
210 211 1.660575 CGGAGCTCGACGTTGTGTT 60.661 57.895 7.83 0.00 42.43 3.32
211 212 2.050351 CGGAGCTCGACGTTGTGT 60.050 61.111 7.83 0.00 42.43 3.72
212 213 2.050351 ACGGAGCTCGACGTTGTG 60.050 61.111 11.61 1.08 40.99 3.33
213 214 2.254651 GACGGAGCTCGACGTTGT 59.745 61.111 17.31 5.03 44.24 3.32
239 240 4.323477 GTGTAGTGTGCCCCCGCA 62.323 66.667 0.00 0.00 44.78 5.69
241 242 2.966732 ATGGTGTAGTGTGCCCCCG 61.967 63.158 0.00 0.00 0.00 5.73
242 243 1.378514 CATGGTGTAGTGTGCCCCC 60.379 63.158 0.00 0.00 0.00 5.40
243 244 0.676782 GTCATGGTGTAGTGTGCCCC 60.677 60.000 0.00 0.00 0.00 5.80
244 245 0.036164 TGTCATGGTGTAGTGTGCCC 59.964 55.000 0.00 0.00 0.00 5.36
245 246 1.890876 TTGTCATGGTGTAGTGTGCC 58.109 50.000 0.00 0.00 0.00 5.01
246 247 3.980646 TTTTGTCATGGTGTAGTGTGC 57.019 42.857 0.00 0.00 0.00 4.57
536 549 6.603599 GGGCTTCCAGTGTCTTCTAATTAATT 59.396 38.462 5.89 5.89 0.00 1.40
537 550 6.122964 GGGCTTCCAGTGTCTTCTAATTAAT 58.877 40.000 0.00 0.00 0.00 1.40
538 551 5.013704 TGGGCTTCCAGTGTCTTCTAATTAA 59.986 40.000 0.00 0.00 35.21 1.40
539 552 4.534500 TGGGCTTCCAGTGTCTTCTAATTA 59.466 41.667 0.00 0.00 35.21 1.40
799 1311 0.250166 CCCGTTTCCGAACAGAGGTT 60.250 55.000 0.00 0.00 40.76 3.50
800 1312 1.370064 CCCGTTTCCGAACAGAGGT 59.630 57.895 0.00 0.00 35.44 3.85
801 1313 0.250166 AACCCGTTTCCGAACAGAGG 60.250 55.000 0.00 0.00 35.44 3.69
802 1314 1.145803 GAACCCGTTTCCGAACAGAG 58.854 55.000 0.00 0.00 35.44 3.35
896 1408 1.721389 GGTCGCGTCTATCGTATCGTA 59.279 52.381 5.77 0.00 42.13 3.43
897 1409 0.510359 GGTCGCGTCTATCGTATCGT 59.490 55.000 5.77 0.00 42.13 3.73
898 1410 0.788995 AGGTCGCGTCTATCGTATCG 59.211 55.000 5.77 0.00 42.13 2.92
899 1411 1.136029 CCAGGTCGCGTCTATCGTATC 60.136 57.143 5.77 0.00 42.13 2.24
979 1499 2.798847 GAGTGTAAACTGAACCGGACAC 59.201 50.000 9.46 9.82 37.93 3.67
1045 1570 3.303928 CTCGTCCCCCTATCCCGC 61.304 72.222 0.00 0.00 0.00 6.13
1051 1576 2.192443 CTCTCGCTCGTCCCCCTA 59.808 66.667 0.00 0.00 0.00 3.53
1056 1581 4.816984 TCCCCCTCTCGCTCGTCC 62.817 72.222 0.00 0.00 0.00 4.79
1058 1583 4.824515 CCTCCCCCTCTCGCTCGT 62.825 72.222 0.00 0.00 0.00 4.18
1093 1618 4.735132 TCCTCGGCGTTCGGCTTG 62.735 66.667 15.85 8.55 42.94 4.01
1097 1622 1.721664 TAGATGTCCTCGGCGTTCGG 61.722 60.000 6.85 6.54 39.77 4.30
1213 1739 2.125512 AGGAATCGCACGCTCACC 60.126 61.111 0.00 0.00 0.00 4.02
1505 2037 2.815211 TCGTCGTCGTAGTCGGGG 60.815 66.667 1.33 0.00 39.90 5.73
1550 2082 9.032420 CCAGTCTCATCATAATCATCATAATCG 57.968 37.037 0.00 0.00 0.00 3.34
1578 2113 2.135189 AGGGGGCTTAACATCAGCATA 58.865 47.619 0.00 0.00 39.21 3.14
1583 2118 1.367346 TCACAGGGGGCTTAACATCA 58.633 50.000 0.00 0.00 0.00 3.07
1617 2152 3.932580 TAGCTTGCACAGACGGCCG 62.933 63.158 26.86 26.86 0.00 6.13
1624 2159 3.192422 AGACAGACTAGTAGCTTGCACAG 59.808 47.826 0.00 0.00 0.00 3.66
1652 2187 6.701841 ACTTATAACTGATGCAGTGAATACGG 59.298 38.462 0.22 0.00 44.62 4.02
1655 2190 9.143155 TCCTACTTATAACTGATGCAGTGAATA 57.857 33.333 0.22 0.76 44.62 1.75
1656 2191 8.023021 TCCTACTTATAACTGATGCAGTGAAT 57.977 34.615 0.22 0.00 44.62 2.57
1736 2365 3.807071 CCGCCAAACAACTTAAAATGCTT 59.193 39.130 0.00 0.00 0.00 3.91
1772 2401 4.678509 TCGGTGCATTCAAGATTACAAC 57.321 40.909 0.00 0.00 0.00 3.32
1832 2462 8.495148 GGCACTTTTTCAAAATGACGAATTTAT 58.505 29.630 2.88 0.00 37.51 1.40
2041 2675 4.883759 TCATAGAGAAATCACCTGGAGGA 58.116 43.478 0.00 0.00 38.94 3.71
2209 2909 1.817447 GCTACTACTCCTCACCAACGT 59.183 52.381 0.00 0.00 0.00 3.99
2288 3008 4.263572 CAGGCGGTGGTTGGTGGA 62.264 66.667 0.00 0.00 0.00 4.02
2609 3329 1.991965 GCATAACGGAAAACCGACGTA 59.008 47.619 15.45 5.11 40.31 3.57
2638 3358 6.971726 TGGTCATACCGAGACTATAAATGT 57.028 37.500 0.00 0.00 42.58 2.71
2759 3483 3.375782 AAACAGGCAGCAGAAATCAAC 57.624 42.857 0.00 0.00 0.00 3.18
2863 3587 4.890158 TGCAGAAGAAGATGGACACTTA 57.110 40.909 0.00 0.00 0.00 2.24
2883 3607 5.991328 ATCATATAGACAACAACGCCTTG 57.009 39.130 0.00 0.00 0.00 3.61
2929 3653 2.094182 GCTAGACTGGATGGACGAAACA 60.094 50.000 0.00 0.00 0.00 2.83
2980 3705 9.744468 AAGCTTCGAGTTTTAACAACATTTTAT 57.256 25.926 0.00 0.00 0.00 1.40
3003 3728 0.517316 CAACCGACAACCTGCTAAGC 59.483 55.000 0.00 0.00 0.00 3.09
3109 3834 8.425703 GCTCTTATATTTCTTTACAGAGGGAGT 58.574 37.037 0.00 0.00 0.00 3.85
3110 3835 8.424918 TGCTCTTATATTTCTTTACAGAGGGAG 58.575 37.037 0.00 0.00 0.00 4.30
3111 3836 8.319057 TGCTCTTATATTTCTTTACAGAGGGA 57.681 34.615 0.00 0.00 0.00 4.20
3112 3837 9.566432 AATGCTCTTATATTTCTTTACAGAGGG 57.434 33.333 0.00 0.00 0.00 4.30
3153 3878 9.678260 AAGAAATGTAAGAGCATTTAGATCACT 57.322 29.630 4.32 0.00 45.68 3.41
3158 3883 8.879759 CCGTAAAGAAATGTAAGAGCATTTAGA 58.120 33.333 4.32 0.00 45.68 2.10
3159 3884 8.879759 TCCGTAAAGAAATGTAAGAGCATTTAG 58.120 33.333 4.32 0.00 45.68 1.85
3160 3885 8.780846 TCCGTAAAGAAATGTAAGAGCATTTA 57.219 30.769 4.32 0.00 45.68 1.40
3162 3887 6.316390 CCTCCGTAAAGAAATGTAAGAGCATT 59.684 38.462 0.00 0.00 40.43 3.56
3163 3888 5.817816 CCTCCGTAAAGAAATGTAAGAGCAT 59.182 40.000 0.00 0.00 0.00 3.79
3164 3889 5.175859 CCTCCGTAAAGAAATGTAAGAGCA 58.824 41.667 0.00 0.00 0.00 4.26
3165 3890 4.571176 CCCTCCGTAAAGAAATGTAAGAGC 59.429 45.833 0.00 0.00 0.00 4.09
3166 3891 5.974108 TCCCTCCGTAAAGAAATGTAAGAG 58.026 41.667 0.00 0.00 0.00 2.85
3167 3892 5.482878 ACTCCCTCCGTAAAGAAATGTAAGA 59.517 40.000 0.00 0.00 0.00 2.10
3168 3893 5.731591 ACTCCCTCCGTAAAGAAATGTAAG 58.268 41.667 0.00 0.00 0.00 2.34
3169 3894 5.750352 ACTCCCTCCGTAAAGAAATGTAA 57.250 39.130 0.00 0.00 0.00 2.41
3170 3895 5.954150 ACTACTCCCTCCGTAAAGAAATGTA 59.046 40.000 0.00 0.00 0.00 2.29
3171 3896 4.776308 ACTACTCCCTCCGTAAAGAAATGT 59.224 41.667 0.00 0.00 0.00 2.71
3172 3897 5.340439 ACTACTCCCTCCGTAAAGAAATG 57.660 43.478 0.00 0.00 0.00 2.32
3173 3898 5.720520 AGAACTACTCCCTCCGTAAAGAAAT 59.279 40.000 0.00 0.00 0.00 2.17
3174 3899 5.082425 AGAACTACTCCCTCCGTAAAGAAA 58.918 41.667 0.00 0.00 0.00 2.52
3175 3900 4.670765 AGAACTACTCCCTCCGTAAAGAA 58.329 43.478 0.00 0.00 0.00 2.52
3176 3901 4.313020 AGAACTACTCCCTCCGTAAAGA 57.687 45.455 0.00 0.00 0.00 2.52
3177 3902 6.461231 CCATAAGAACTACTCCCTCCGTAAAG 60.461 46.154 0.00 0.00 0.00 1.85
3178 3903 5.361857 CCATAAGAACTACTCCCTCCGTAAA 59.638 44.000 0.00 0.00 0.00 2.01
3179 3904 4.891756 CCATAAGAACTACTCCCTCCGTAA 59.108 45.833 0.00 0.00 0.00 3.18
3180 3905 4.467769 CCATAAGAACTACTCCCTCCGTA 58.532 47.826 0.00 0.00 0.00 4.02
3181 3906 3.297736 CCATAAGAACTACTCCCTCCGT 58.702 50.000 0.00 0.00 0.00 4.69
3182 3907 2.036089 GCCATAAGAACTACTCCCTCCG 59.964 54.545 0.00 0.00 0.00 4.63
3183 3908 2.369203 GGCCATAAGAACTACTCCCTCC 59.631 54.545 0.00 0.00 0.00 4.30
3184 3909 3.039011 TGGCCATAAGAACTACTCCCTC 58.961 50.000 0.00 0.00 0.00 4.30
3185 3910 3.130734 TGGCCATAAGAACTACTCCCT 57.869 47.619 0.00 0.00 0.00 4.20
3186 3911 4.347000 TGTATGGCCATAAGAACTACTCCC 59.653 45.833 27.04 10.44 0.00 4.30
3187 3912 5.298347 GTGTATGGCCATAAGAACTACTCC 58.702 45.833 27.04 10.94 0.00 3.85
3188 3913 5.070580 AGGTGTATGGCCATAAGAACTACTC 59.929 44.000 27.04 15.17 0.00 2.59
3189 3914 4.969359 AGGTGTATGGCCATAAGAACTACT 59.031 41.667 27.04 15.25 0.00 2.57
3190 3915 5.291905 AGGTGTATGGCCATAAGAACTAC 57.708 43.478 27.04 15.69 0.00 2.73
3220 3945 7.834181 ACTACATATTCCACTAAGGTGCAAAAT 59.166 33.333 0.00 0.00 41.75 1.82
3260 3985 9.562583 CTAATCAAGAGACTAACAGAGTAACAC 57.437 37.037 0.00 0.00 39.06 3.32
3261 3986 9.298250 ACTAATCAAGAGACTAACAGAGTAACA 57.702 33.333 0.00 0.00 39.06 2.41
3576 4301 5.161358 TGACAGATTCTACTAGTTGCAACG 58.839 41.667 23.21 12.97 0.00 4.10
3685 4410 2.921634 TTCTCTCAGAATCACCGTCG 57.078 50.000 0.00 0.00 0.00 5.12
3864 4589 5.046529 ACTGTGAGATGTCGAATTAGCATC 58.953 41.667 11.94 11.94 39.26 3.91
4087 5813 1.462283 GTATGTGCTGTGACAGTGCTG 59.538 52.381 14.82 0.00 33.43 4.41
4234 5960 8.388656 ACAAATATTTAGGAACAGAGGGAGTA 57.611 34.615 0.00 0.00 0.00 2.59
4235 5961 7.182930 AGACAAATATTTAGGAACAGAGGGAGT 59.817 37.037 0.00 0.00 0.00 3.85
4236 5962 7.569240 AGACAAATATTTAGGAACAGAGGGAG 58.431 38.462 0.00 0.00 0.00 4.30
4237 5963 7.510675 AGACAAATATTTAGGAACAGAGGGA 57.489 36.000 0.00 0.00 0.00 4.20
4238 5964 8.581253 AAAGACAAATATTTAGGAACAGAGGG 57.419 34.615 0.00 0.00 0.00 4.30
4256 5982 9.965824 GTCCATTTGAAATCTCTAAAAAGACAA 57.034 29.630 0.00 0.00 0.00 3.18
4257 5983 8.576442 GGTCCATTTGAAATCTCTAAAAAGACA 58.424 33.333 0.00 0.00 0.00 3.41
4258 5984 8.576442 TGGTCCATTTGAAATCTCTAAAAAGAC 58.424 33.333 0.00 0.00 0.00 3.01
4259 5985 8.576442 GTGGTCCATTTGAAATCTCTAAAAAGA 58.424 33.333 0.00 0.00 0.00 2.52
4260 5986 7.814587 GGTGGTCCATTTGAAATCTCTAAAAAG 59.185 37.037 0.00 0.00 0.00 2.27
4261 5987 7.288852 TGGTGGTCCATTTGAAATCTCTAAAAA 59.711 33.333 0.00 0.00 39.03 1.94
4262 5988 6.780031 TGGTGGTCCATTTGAAATCTCTAAAA 59.220 34.615 0.00 0.00 39.03 1.52
4263 5989 6.208599 GTGGTGGTCCATTTGAAATCTCTAAA 59.791 38.462 0.00 0.00 46.20 1.85
4264 5990 5.710099 GTGGTGGTCCATTTGAAATCTCTAA 59.290 40.000 0.00 0.00 46.20 2.10
4265 5991 5.222027 TGTGGTGGTCCATTTGAAATCTCTA 60.222 40.000 0.00 0.00 46.20 2.43
4266 5992 4.082125 GTGGTGGTCCATTTGAAATCTCT 58.918 43.478 0.00 0.00 46.20 3.10
4267 5993 3.826157 TGTGGTGGTCCATTTGAAATCTC 59.174 43.478 0.00 0.00 46.20 2.75
4268 5994 3.843422 TGTGGTGGTCCATTTGAAATCT 58.157 40.909 0.00 0.00 46.20 2.40
4269 5995 4.806640 ATGTGGTGGTCCATTTGAAATC 57.193 40.909 0.00 0.00 46.20 2.17
4270 5996 5.083122 TGTATGTGGTGGTCCATTTGAAAT 58.917 37.500 0.00 0.00 46.20 2.17
4271 5997 4.474394 TGTATGTGGTGGTCCATTTGAAA 58.526 39.130 0.00 0.00 46.20 2.69
4272 5998 4.078537 CTGTATGTGGTGGTCCATTTGAA 58.921 43.478 0.00 0.00 46.20 2.69
4273 5999 3.329225 TCTGTATGTGGTGGTCCATTTGA 59.671 43.478 0.00 0.00 46.20 2.69
4274 6000 3.684908 TCTGTATGTGGTGGTCCATTTG 58.315 45.455 0.00 0.00 46.20 2.32
4275 6001 4.263905 ACATCTGTATGTGGTGGTCCATTT 60.264 41.667 0.00 0.00 44.79 2.32
4276 6002 3.266772 ACATCTGTATGTGGTGGTCCATT 59.733 43.478 0.00 0.00 44.79 3.16
4277 6003 2.846206 ACATCTGTATGTGGTGGTCCAT 59.154 45.455 0.00 0.00 44.79 3.41
4278 6004 2.265367 ACATCTGTATGTGGTGGTCCA 58.735 47.619 0.00 0.00 44.79 4.02
4279 6005 4.689612 ATACATCTGTATGTGGTGGTCC 57.310 45.455 2.10 0.00 45.99 4.46
4280 6006 8.244802 GTCTATATACATCTGTATGTGGTGGTC 58.755 40.741 12.10 0.34 45.99 4.02
4281 6007 7.728532 TGTCTATATACATCTGTATGTGGTGGT 59.271 37.037 12.10 0.00 45.99 4.16
4282 6008 8.122472 TGTCTATATACATCTGTATGTGGTGG 57.878 38.462 12.10 0.62 45.99 4.61
4317 6043 6.037172 ACGGAGCAAAATGAGTGAATATACAC 59.963 38.462 0.00 0.00 40.60 2.90
4318 6044 6.112734 ACGGAGCAAAATGAGTGAATATACA 58.887 36.000 0.00 0.00 0.00 2.29
4319 6045 6.604735 ACGGAGCAAAATGAGTGAATATAC 57.395 37.500 0.00 0.00 0.00 1.47
4320 6046 7.931407 ACATACGGAGCAAAATGAGTGAATATA 59.069 33.333 0.00 0.00 0.00 0.86
4321 6047 6.767902 ACATACGGAGCAAAATGAGTGAATAT 59.232 34.615 0.00 0.00 0.00 1.28
4322 6048 6.112734 ACATACGGAGCAAAATGAGTGAATA 58.887 36.000 0.00 0.00 0.00 1.75
4323 6049 4.943705 ACATACGGAGCAAAATGAGTGAAT 59.056 37.500 0.00 0.00 0.00 2.57
4324 6050 4.323417 ACATACGGAGCAAAATGAGTGAA 58.677 39.130 0.00 0.00 0.00 3.18
4325 6051 3.937814 ACATACGGAGCAAAATGAGTGA 58.062 40.909 0.00 0.00 0.00 3.41
4326 6052 4.870426 ACTACATACGGAGCAAAATGAGTG 59.130 41.667 0.00 0.00 0.00 3.51
4327 6053 5.086104 ACTACATACGGAGCAAAATGAGT 57.914 39.130 0.00 0.00 0.00 3.41
4328 6054 5.005779 GTGACTACATACGGAGCAAAATGAG 59.994 44.000 0.00 0.00 0.00 2.90
4329 6055 4.868171 GTGACTACATACGGAGCAAAATGA 59.132 41.667 0.00 0.00 0.00 2.57
4330 6056 4.870426 AGTGACTACATACGGAGCAAAATG 59.130 41.667 0.00 0.00 0.00 2.32
4331 6057 5.086104 AGTGACTACATACGGAGCAAAAT 57.914 39.130 0.00 0.00 0.00 1.82
4332 6058 4.530710 AGTGACTACATACGGAGCAAAA 57.469 40.909 0.00 0.00 0.00 2.44
4333 6059 4.242475 CAAGTGACTACATACGGAGCAAA 58.758 43.478 0.00 0.00 0.00 3.68
4334 6060 3.257375 ACAAGTGACTACATACGGAGCAA 59.743 43.478 0.00 0.00 0.00 3.91
4335 6061 2.823747 ACAAGTGACTACATACGGAGCA 59.176 45.455 0.00 0.00 0.00 4.26
4336 6062 3.505464 ACAAGTGACTACATACGGAGC 57.495 47.619 0.00 0.00 0.00 4.70
4337 6063 5.055642 TCAACAAGTGACTACATACGGAG 57.944 43.478 0.00 0.00 0.00 4.63
4338 6064 5.456548 TTCAACAAGTGACTACATACGGA 57.543 39.130 0.00 0.00 35.39 4.69
4339 6065 6.590292 AGATTTCAACAAGTGACTACATACGG 59.410 38.462 0.00 0.00 35.39 4.02
4340 6066 7.542477 AGAGATTTCAACAAGTGACTACATACG 59.458 37.037 0.00 0.00 35.39 3.06
4341 6067 8.764524 AGAGATTTCAACAAGTGACTACATAC 57.235 34.615 0.00 0.00 35.39 2.39
4343 6069 8.807118 TCTAGAGATTTCAACAAGTGACTACAT 58.193 33.333 0.00 0.00 35.39 2.29
4344 6070 8.178313 TCTAGAGATTTCAACAAGTGACTACA 57.822 34.615 0.00 0.00 35.39 2.74
4345 6071 9.477484 TTTCTAGAGATTTCAACAAGTGACTAC 57.523 33.333 0.00 0.00 35.39 2.73
4346 6072 9.698309 CTTTCTAGAGATTTCAACAAGTGACTA 57.302 33.333 0.00 0.00 35.39 2.59
4347 6073 8.424918 TCTTTCTAGAGATTTCAACAAGTGACT 58.575 33.333 0.00 0.00 35.39 3.41
4348 6074 8.491950 GTCTTTCTAGAGATTTCAACAAGTGAC 58.508 37.037 0.00 0.00 35.39 3.67
4349 6075 8.204160 TGTCTTTCTAGAGATTTCAACAAGTGA 58.796 33.333 0.00 0.00 0.00 3.41
4350 6076 8.370493 TGTCTTTCTAGAGATTTCAACAAGTG 57.630 34.615 0.00 0.00 0.00 3.16
4351 6077 8.964476 TTGTCTTTCTAGAGATTTCAACAAGT 57.036 30.769 0.00 0.00 0.00 3.16
4364 6090 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
4365 6091 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
4366 6092 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
4367 6093 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
4368 6094 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
4369 6095 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
4370 6096 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
4371 6097 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
4372 6098 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
4373 6099 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
4374 6100 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
4375 6101 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
4376 6102 7.628501 AATACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
4377 6103 7.179872 GGTAATACTCCCTCCGTTCCTAAATAT 59.820 40.741 0.00 0.00 0.00 1.28
4378 6104 6.494835 GGTAATACTCCCTCCGTTCCTAAATA 59.505 42.308 0.00 0.00 0.00 1.40
4379 6105 5.306419 GGTAATACTCCCTCCGTTCCTAAAT 59.694 44.000 0.00 0.00 0.00 1.40
4380 6106 4.651045 GGTAATACTCCCTCCGTTCCTAAA 59.349 45.833 0.00 0.00 0.00 1.85
4381 6107 4.078980 AGGTAATACTCCCTCCGTTCCTAA 60.079 45.833 0.00 0.00 0.00 2.69
4382 6108 3.464833 AGGTAATACTCCCTCCGTTCCTA 59.535 47.826 0.00 0.00 0.00 2.94
4383 6109 2.246849 AGGTAATACTCCCTCCGTTCCT 59.753 50.000 0.00 0.00 0.00 3.36
4384 6110 2.675583 AGGTAATACTCCCTCCGTTCC 58.324 52.381 0.00 0.00 0.00 3.62
4385 6111 5.303845 ACAATAGGTAATACTCCCTCCGTTC 59.696 44.000 0.00 0.00 32.08 3.95
4386 6112 5.070047 CACAATAGGTAATACTCCCTCCGTT 59.930 44.000 0.00 0.00 32.08 4.44
4387 6113 4.587684 CACAATAGGTAATACTCCCTCCGT 59.412 45.833 0.00 0.00 32.08 4.69
4388 6114 4.831155 TCACAATAGGTAATACTCCCTCCG 59.169 45.833 0.00 0.00 32.08 4.63
4389 6115 6.326843 AGTTCACAATAGGTAATACTCCCTCC 59.673 42.308 0.00 0.00 32.08 4.30
4390 6116 7.288158 AGAGTTCACAATAGGTAATACTCCCTC 59.712 40.741 0.00 0.00 33.91 4.30
4391 6117 7.070074 CAGAGTTCACAATAGGTAATACTCCCT 59.930 40.741 0.00 0.00 33.91 4.20
4392 6118 7.147707 ACAGAGTTCACAATAGGTAATACTCCC 60.148 40.741 0.00 0.00 33.91 4.30
4393 6119 7.783042 ACAGAGTTCACAATAGGTAATACTCC 58.217 38.462 0.00 0.00 33.91 3.85
4394 6120 7.921745 GGACAGAGTTCACAATAGGTAATACTC 59.078 40.741 0.00 0.00 33.75 2.59
4395 6121 7.620094 AGGACAGAGTTCACAATAGGTAATACT 59.380 37.037 0.00 0.00 0.00 2.12
4396 6122 7.783042 AGGACAGAGTTCACAATAGGTAATAC 58.217 38.462 0.00 0.00 0.00 1.89
4423 6313 2.774439 AACAACGCTAACAGCAAAGG 57.226 45.000 0.00 0.00 42.58 3.11
4466 6356 5.916883 GGAATTGACTGTTGAGACACAAATG 59.083 40.000 0.00 0.00 40.36 2.32
4625 6517 5.369110 AGAACTGCTAGCCCTACTACTACTA 59.631 44.000 13.29 0.00 0.00 1.82
4626 6518 4.166531 AGAACTGCTAGCCCTACTACTACT 59.833 45.833 13.29 0.00 0.00 2.57
4627 6519 4.276431 CAGAACTGCTAGCCCTACTACTAC 59.724 50.000 13.29 0.00 0.00 2.73
4864 6768 5.956068 AGAAGAGGAAATGTGAAAAGAGC 57.044 39.130 0.00 0.00 0.00 4.09
5192 7167 1.537202 GTCATTGTGACACCTCTTGCC 59.463 52.381 2.45 0.00 46.22 4.52
5499 7474 3.193691 AGTCGTACCTTGATGAACTCCAG 59.806 47.826 0.00 0.00 0.00 3.86
5709 7684 3.107402 AGAGAGAGGCTACAACATCCA 57.893 47.619 0.00 0.00 0.00 3.41
5798 7773 8.728833 TCAAATTGTGAGAAAAACAGCAAAAAT 58.271 25.926 0.00 0.00 0.00 1.82
6421 8399 5.468072 AGCAGTCAGGAGAAATATAATTGCG 59.532 40.000 0.00 0.00 0.00 4.85
6505 8483 4.765339 TGAACTAGAGTCTCGTTCAATGGA 59.235 41.667 28.54 12.21 41.11 3.41
6558 8536 6.524101 TCAATTCCCTGTAAAATAACTGCC 57.476 37.500 0.00 0.00 0.00 4.85
6713 8691 7.480760 AACAAGGCTTTGGTTATATGACATT 57.519 32.000 13.65 0.00 38.66 2.71
6733 8711 5.182001 GCTGGAGAAGAAGCTAATCAAACAA 59.818 40.000 0.00 0.00 36.47 2.83
6935 8913 2.457366 AAGTTAGCTGTTCACGAGGG 57.543 50.000 0.00 0.00 0.00 4.30
6939 8917 4.530094 TCACAAAAGTTAGCTGTTCACG 57.470 40.909 0.00 0.00 0.00 4.35
6951 8929 9.787435 TCACAAGGTATATAACTTCACAAAAGT 57.213 29.630 10.20 1.25 0.00 2.66
7031 9012 1.134995 CACAGACCGCTTGATCTAGCA 60.135 52.381 25.30 0.00 41.28 3.49
7187 9168 2.356673 GCAAGGCAGCAACTTGGC 60.357 61.111 11.93 3.55 44.16 4.52
7219 9202 2.033801 CCGGTATTACAGTACCAGTCGG 59.966 54.545 0.00 0.00 43.53 4.79
7221 9204 2.542411 CGCCGGTATTACAGTACCAGTC 60.542 54.545 1.90 0.00 43.53 3.51
7223 9206 1.866880 GCGCCGGTATTACAGTACCAG 60.867 57.143 1.90 0.00 43.53 4.00
7354 9359 6.596497 TCCCCAGCTTAATTAAAACTAACTCG 59.404 38.462 0.00 0.00 0.00 4.18
7485 9497 1.835494 CTAGAGAGGTGAACGTGGGA 58.165 55.000 0.00 0.00 0.00 4.37
7489 9501 4.437772 GTTTAGCTAGAGAGGTGAACGT 57.562 45.455 0.00 0.00 39.11 3.99
7566 9578 9.255304 TGATTTTAGCTTATTGGTTTGTGAAAC 57.745 29.630 0.00 0.00 40.65 2.78
7636 9648 0.179043 CTCGATCTCTGGACTCCGGA 60.179 60.000 2.93 2.93 36.43 5.14
7652 9664 0.457851 AGCTCCCTCGACAAATCTCG 59.542 55.000 0.00 0.00 34.83 4.04
7694 9706 2.174685 TCTGGGCTGGAGCATACTAA 57.825 50.000 0.20 0.00 44.36 2.24
7726 9738 4.803426 GTCACCTCGCTGGAGCCG 62.803 72.222 1.32 0.00 39.06 5.52
7727 9739 4.459089 GGTCACCTCGCTGGAGCC 62.459 72.222 1.32 0.00 39.06 4.70
7735 9747 3.760035 CACCTCCCGGTCACCTCG 61.760 72.222 0.00 0.00 43.24 4.63
7743 9755 1.144936 GCAGAAGATCACCTCCCGG 59.855 63.158 0.00 0.00 0.00 5.73
7747 9759 2.765699 AGAGAAGGCAGAAGATCACCTC 59.234 50.000 0.00 0.00 0.00 3.85
7751 9763 2.425312 GTCGAGAGAAGGCAGAAGATCA 59.575 50.000 0.00 0.00 45.01 2.92
7771 9783 4.640855 CCACGACGTCGCTGGTGT 62.641 66.667 35.92 14.38 44.43 4.16
7777 9789 4.773117 GAGGACCCACGACGTCGC 62.773 72.222 35.92 19.77 44.43 5.19
7778 9790 4.456253 CGAGGACCCACGACGTCG 62.456 72.222 34.58 34.58 46.33 5.12
7779 9791 3.319926 GACGAGGACCCACGACGTC 62.320 68.421 12.54 5.18 44.19 4.34
7780 9792 3.360340 GACGAGGACCCACGACGT 61.360 66.667 12.54 0.00 39.82 4.34
7781 9793 4.112341 GGACGAGGACCCACGACG 62.112 72.222 12.54 0.00 34.34 5.12
7782 9794 2.675772 AGGACGAGGACCCACGAC 60.676 66.667 12.54 6.37 34.34 4.34
7783 9795 2.360852 GAGGACGAGGACCCACGA 60.361 66.667 12.54 0.00 34.34 4.35
7784 9796 1.935327 GAAGAGGACGAGGACCCACG 61.935 65.000 4.40 4.40 36.19 4.94
7785 9797 1.891616 GAAGAGGACGAGGACCCAC 59.108 63.158 0.00 0.00 0.00 4.61
7794 9806 0.597637 AGCAACACACGAAGAGGACG 60.598 55.000 0.00 0.00 0.00 4.79
7802 9814 1.080772 CCGCTAGAGCAACACACGA 60.081 57.895 1.89 0.00 42.21 4.35
7808 9820 1.226717 CCTCGTCCGCTAGAGCAAC 60.227 63.158 1.89 0.00 42.21 4.17
7810 9822 2.113433 GTCCTCGTCCGCTAGAGCA 61.113 63.158 1.89 0.00 42.21 4.26
7819 9831 1.765597 AACTGTTGGGGTCCTCGTCC 61.766 60.000 0.00 0.00 0.00 4.79
7821 9833 1.450211 CAACTGTTGGGGTCCTCGT 59.550 57.895 12.66 0.00 0.00 4.18
7824 9836 1.151450 CAGCAACTGTTGGGGTCCT 59.849 57.895 21.01 7.16 0.00 3.85
7832 9844 3.368013 CCATCATTGATGCAGCAACTGTT 60.368 43.478 21.29 11.30 38.59 3.16
7837 9903 2.686405 GTCTCCATCATTGATGCAGCAA 59.314 45.455 21.11 21.11 38.59 3.91
7842 9908 0.590195 GCCGTCTCCATCATTGATGC 59.410 55.000 19.26 6.54 38.59 3.91
7862 9928 2.017049 AGCAGATTATTCCAACGTGGC 58.983 47.619 0.00 0.00 37.47 5.01
7863 9929 5.751680 CATAAGCAGATTATTCCAACGTGG 58.248 41.667 0.00 0.00 33.43 4.94
7864 9930 5.008019 AGCATAAGCAGATTATTCCAACGTG 59.992 40.000 0.00 0.00 45.49 4.49
7865 9931 5.126067 AGCATAAGCAGATTATTCCAACGT 58.874 37.500 0.00 0.00 45.49 3.99
7869 9935 7.285566 AGAAAGAGCATAAGCAGATTATTCCA 58.714 34.615 0.00 0.00 45.49 3.53
7880 9946 3.740321 CGAGATGGAGAAAGAGCATAAGC 59.260 47.826 0.00 0.00 42.56 3.09
7884 9950 2.114616 ACCGAGATGGAGAAAGAGCAT 58.885 47.619 0.00 0.00 42.00 3.79
7892 9958 1.022735 GAACGCTACCGAGATGGAGA 58.977 55.000 0.00 0.00 42.00 3.71
7893 9959 1.025812 AGAACGCTACCGAGATGGAG 58.974 55.000 0.00 0.00 42.00 3.86
7895 9961 3.309388 CATTAGAACGCTACCGAGATGG 58.691 50.000 0.00 0.00 46.41 3.51
7903 9969 4.995124 TCTGAAGACCATTAGAACGCTAC 58.005 43.478 0.00 0.00 0.00 3.58
7905 9971 4.442192 GGATCTGAAGACCATTAGAACGCT 60.442 45.833 0.00 0.00 0.00 5.07
7907 9973 4.045104 CGGATCTGAAGACCATTAGAACG 58.955 47.826 0.00 0.00 0.00 3.95
7918 9984 4.464244 AGACAAATCTCACGGATCTGAAGA 59.536 41.667 9.00 10.83 32.76 2.87
7919 9985 4.565962 CAGACAAATCTCACGGATCTGAAG 59.434 45.833 9.00 5.49 32.76 3.02
7920 9986 4.220602 TCAGACAAATCTCACGGATCTGAA 59.779 41.667 9.00 0.00 32.35 3.02
7921 9987 3.763897 TCAGACAAATCTCACGGATCTGA 59.236 43.478 9.00 0.00 32.64 3.27
7924 9990 3.806521 CCATCAGACAAATCTCACGGATC 59.193 47.826 0.00 0.00 32.76 3.36
7925 9991 3.198635 ACCATCAGACAAATCTCACGGAT 59.801 43.478 0.00 0.00 35.97 4.18
7926 9992 2.567169 ACCATCAGACAAATCTCACGGA 59.433 45.455 0.00 0.00 30.42 4.69
7927 9993 2.932614 GACCATCAGACAAATCTCACGG 59.067 50.000 0.00 0.00 30.42 4.94
7928 9994 2.600420 CGACCATCAGACAAATCTCACG 59.400 50.000 0.00 0.00 30.42 4.35
7930 9996 3.673323 CGTCGACCATCAGACAAATCTCA 60.673 47.826 10.58 0.00 37.23 3.27
7932 9998 2.881074 CGTCGACCATCAGACAAATCT 58.119 47.619 10.58 0.00 37.23 2.40
7933 9999 1.324736 GCGTCGACCATCAGACAAATC 59.675 52.381 10.58 0.00 37.23 2.17
7934 10000 1.337728 TGCGTCGACCATCAGACAAAT 60.338 47.619 10.58 0.00 37.23 2.32
7935 10001 0.032815 TGCGTCGACCATCAGACAAA 59.967 50.000 10.58 0.00 37.23 2.83
7956 10063 2.668550 GCCACCCGAGAAAGCGTT 60.669 61.111 0.00 0.00 0.00 4.84
7959 10066 1.359459 CTAACGCCACCCGAGAAAGC 61.359 60.000 0.00 0.00 41.02 3.51
7962 10069 1.895020 ATGCTAACGCCACCCGAGAA 61.895 55.000 0.00 0.00 41.02 2.87
7965 10072 2.185867 GATGCTAACGCCACCCGA 59.814 61.111 0.00 0.00 41.02 5.14
7974 10081 4.809426 ACAACTGTAATAGGCGATGCTAAC 59.191 41.667 0.00 0.00 0.00 2.34
7977 10084 3.198068 CACAACTGTAATAGGCGATGCT 58.802 45.455 0.00 0.00 0.00 3.79
7980 10087 4.394920 CCAAACACAACTGTAATAGGCGAT 59.605 41.667 0.00 0.00 0.00 4.58
7984 10091 6.877611 AAGACCAAACACAACTGTAATAGG 57.122 37.500 0.00 0.00 0.00 2.57
7987 10094 5.810074 GCAAAAGACCAAACACAACTGTAAT 59.190 36.000 0.00 0.00 0.00 1.89
7990 10097 3.006323 TGCAAAAGACCAAACACAACTGT 59.994 39.130 0.00 0.00 0.00 3.55
7992 10099 3.951775 TGCAAAAGACCAAACACAACT 57.048 38.095 0.00 0.00 0.00 3.16
8005 10112 2.890311 TCCACACACCCTATTGCAAAAG 59.110 45.455 1.71 0.00 0.00 2.27
8007 10114 2.666272 TCCACACACCCTATTGCAAA 57.334 45.000 1.71 0.00 0.00 3.68
8013 10120 1.526887 CGCCATCCACACACCCTAT 59.473 57.895 0.00 0.00 0.00 2.57
8021 10128 1.829970 TTGTTTGCCGCCATCCACA 60.830 52.632 0.00 0.00 0.00 4.17
8043 10150 1.872237 CGCGGTCAAAGAAGAGGAACA 60.872 52.381 0.00 0.00 0.00 3.18
8061 10168 1.702299 CGTCAACTTCATCCGACGC 59.298 57.895 0.00 0.00 43.88 5.19
8065 10172 0.670546 AGCACCGTCAACTTCATCCG 60.671 55.000 0.00 0.00 0.00 4.18
8085 10192 9.243637 GATACTTTCTCATGTCTGTTACATCTC 57.756 37.037 0.00 0.00 46.15 2.75
8090 10197 6.640518 TGGGATACTTTCTCATGTCTGTTAC 58.359 40.000 0.00 0.00 26.46 2.50
8093 10200 4.383552 GCTGGGATACTTTCTCATGTCTGT 60.384 45.833 0.00 0.00 33.22 3.41
8095 10202 4.036518 AGCTGGGATACTTTCTCATGTCT 58.963 43.478 0.00 0.00 33.22 3.41
8104 10211 1.676014 GCACGTCAGCTGGGATACTTT 60.676 52.381 15.13 0.00 0.00 2.66
8108 10215 1.480789 TTAGCACGTCAGCTGGGATA 58.519 50.000 15.13 1.76 46.11 2.59
8110 10217 0.394938 TTTTAGCACGTCAGCTGGGA 59.605 50.000 15.13 0.00 46.11 4.37
8113 10220 1.400242 GGCTTTTTAGCACGTCAGCTG 60.400 52.381 7.63 7.63 46.11 4.24
8117 10224 1.144969 CGAGGCTTTTTAGCACGTCA 58.855 50.000 0.00 0.00 36.33 4.35
8125 10232 1.274596 GACGCGATCGAGGCTTTTTA 58.725 50.000 21.57 0.00 39.41 1.52
8149 10256 1.800315 CGACGAACGGAATCGCTGT 60.800 57.895 7.33 0.00 46.51 4.40
8164 10271 2.761195 GGATGCTTTTCGGGCCGAC 61.761 63.158 31.23 18.05 34.89 4.79
8195 10302 6.097439 TCATACCCATATCTAGAGGAGCAT 57.903 41.667 0.00 0.00 0.00 3.79
8198 10305 5.304101 GCCATCATACCCATATCTAGAGGAG 59.696 48.000 0.00 0.00 0.00 3.69
8241 10348 3.923864 ACAGTCGCCGAGGCAACA 61.924 61.111 15.03 0.00 42.06 3.33
8250 10357 0.716108 CATCGTCTTTCACAGTCGCC 59.284 55.000 0.00 0.00 34.42 5.54
8252 10359 1.721389 CACCATCGTCTTTCACAGTCG 59.279 52.381 0.00 0.00 35.59 4.18
8259 10366 1.347320 GTCGTCCACCATCGTCTTTC 58.653 55.000 0.00 0.00 0.00 2.62
8260 10367 0.037605 GGTCGTCCACCATCGTCTTT 60.038 55.000 0.00 0.00 45.98 2.52
8271 10378 1.300620 CACGCTGAAAGGTCGTCCA 60.301 57.895 0.51 0.00 33.84 4.02
8276 10383 1.261619 CTTGTGTCACGCTGAAAGGTC 59.738 52.381 0.00 0.00 0.00 3.85
8290 10397 0.687354 ACTCTGGCGGAATCTTGTGT 59.313 50.000 0.00 0.00 0.00 3.72
8292 10399 3.695830 TTTACTCTGGCGGAATCTTGT 57.304 42.857 0.00 0.00 0.00 3.16
8397 10504 4.583489 TCATTAAAAAGCCGGGTTACACAA 59.417 37.500 21.08 11.69 0.00 3.33
8399 10506 4.769859 TCATTAAAAAGCCGGGTTACAC 57.230 40.909 21.08 0.00 0.00 2.90
8440 10547 0.673985 GCCGCCTGGAGTTTCTTTTT 59.326 50.000 0.00 0.00 37.49 1.94
8441 10548 1.179174 GGCCGCCTGGAGTTTCTTTT 61.179 55.000 0.71 0.00 37.49 2.27
8442 10549 1.603739 GGCCGCCTGGAGTTTCTTT 60.604 57.895 0.71 0.00 37.49 2.52
8443 10550 2.034221 GGCCGCCTGGAGTTTCTT 59.966 61.111 0.71 0.00 37.49 2.52
8444 10551 4.394712 CGGCCGCCTGGAGTTTCT 62.395 66.667 14.67 0.00 37.49 2.52
8445 10552 4.699522 ACGGCCGCCTGGAGTTTC 62.700 66.667 28.58 0.00 37.49 2.78
8446 10553 4.699522 GACGGCCGCCTGGAGTTT 62.700 66.667 28.58 0.57 37.49 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.