Multiple sequence alignment - TraesCS2A01G443800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G443800 chr2A 100.000 6049 0 0 1 6049 693899436 693893388 0.000000e+00 11171.0
1 TraesCS2A01G443800 chr2A 100.000 51 0 0 2237 2287 693896942 693896892 1.790000e-15 95.3
2 TraesCS2A01G443800 chr2A 100.000 51 0 0 2495 2545 693897200 693897150 1.790000e-15 95.3
3 TraesCS2A01G443800 chr2D 95.399 2782 81 18 2819 5581 553731461 553728708 0.000000e+00 4385.0
4 TraesCS2A01G443800 chr2D 93.449 2244 45 31 95 2287 553734100 553731908 0.000000e+00 3236.0
5 TraesCS2A01G443800 chr2D 97.240 471 10 2 5581 6049 553728624 553728155 0.000000e+00 795.0
6 TraesCS2A01G443800 chr2D 97.846 325 7 0 2495 2819 553731958 553731634 4.090000e-156 562.0
7 TraesCS2A01G443800 chr2D 87.500 208 15 8 2290 2493 416857397 416857197 4.720000e-56 230.0
8 TraesCS2A01G443800 chr2D 97.778 90 2 0 2730 2819 553731601 553731512 8.120000e-34 156.0
9 TraesCS2A01G443800 chr2B 94.547 2384 77 22 3218 5581 659534382 659532032 0.000000e+00 3633.0
10 TraesCS2A01G443800 chr2B 93.619 2100 44 24 95 2152 659537510 659535459 0.000000e+00 3053.0
11 TraesCS2A01G443800 chr2B 96.814 408 10 2 2815 3219 659534904 659534497 0.000000e+00 678.0
12 TraesCS2A01G443800 chr2B 90.041 482 16 11 5581 6049 659531507 659531045 4.040000e-166 595.0
13 TraesCS2A01G443800 chr2B 96.615 325 7 1 2495 2819 659535287 659534967 2.480000e-148 536.0
14 TraesCS2A01G443800 chr2B 97.248 109 3 0 2179 2287 659535345 659535237 1.040000e-42 185.0
15 TraesCS2A01G443800 chr7A 90.355 197 15 3 2302 2496 705951916 705951722 7.780000e-64 255.0
16 TraesCS2A01G443800 chr5A 88.835 206 20 2 2290 2494 645418064 645417861 3.620000e-62 250.0
17 TraesCS2A01G443800 chr5D 90.155 193 15 3 2304 2495 501424085 501424274 1.300000e-61 248.0
18 TraesCS2A01G443800 chr4B 88.038 209 20 4 2289 2495 18095698 18095493 6.060000e-60 243.0
19 TraesCS2A01G443800 chr1A 88.038 209 19 4 2289 2495 561304456 561304660 6.060000e-60 243.0
20 TraesCS2A01G443800 chr1D 88.038 209 14 8 2290 2494 423281683 423281884 2.820000e-58 237.0
21 TraesCS2A01G443800 chr1D 86.818 220 16 10 2290 2505 347050935 347050725 3.650000e-57 233.0
22 TraesCS2A01G443800 chr7D 87.500 208 15 8 2290 2493 46412090 46411890 4.720000e-56 230.0
23 TraesCS2A01G443800 chr6D 83.750 160 16 9 2634 2787 350514318 350514163 6.320000e-30 143.0
24 TraesCS2A01G443800 chr6B 83.750 160 16 9 2634 2787 529478098 529478253 6.320000e-30 143.0
25 TraesCS2A01G443800 chr6B 86.364 132 16 2 3573 3703 688603079 688603209 6.320000e-30 143.0
26 TraesCS2A01G443800 chr6A 83.544 158 20 6 2634 2787 493341335 493341490 6.320000e-30 143.0
27 TraesCS2A01G443800 chr7B 75.849 265 45 18 3532 3789 600478525 600478777 3.830000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G443800 chr2A 693893388 693899436 6048 True 3787.200000 11171 100.0000 1 6049 3 chr2A.!!$R1 6048
1 TraesCS2A01G443800 chr2D 553728155 553734100 5945 True 1826.800000 4385 96.3424 95 6049 5 chr2D.!!$R2 5954
2 TraesCS2A01G443800 chr2B 659531045 659537510 6465 True 1446.666667 3633 94.8140 95 6049 6 chr2B.!!$R1 5954

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
92 93 1.133482 TGCTATGAGGATCGGTCAGGA 60.133 52.381 0.00 0.0 38.61 3.86 F
856 899 1.208052 GTGTGGAAGAGCATGCTAGGA 59.792 52.381 22.74 0.0 0.00 2.94 F
1983 2043 0.103208 GAGTCTCCGTAGCCACATGG 59.897 60.000 0.00 0.0 38.53 3.66 F
1988 2048 0.177836 TCCGTAGCCACATGGTGATG 59.822 55.000 0.00 0.0 35.23 3.07 F
2392 2544 0.179140 GTGTGTGTTGGTGTTGGCTG 60.179 55.000 0.00 0.0 0.00 4.85 F
2394 2546 0.179140 GTGTGTTGGTGTTGGCTGTG 60.179 55.000 0.00 0.0 0.00 3.66 F
2439 2591 0.250901 GGGTGTGTGCTCATCCTGTT 60.251 55.000 10.97 0.0 35.85 3.16 F
3125 3469 0.548031 ATCAACCCTCGGTCATGCAT 59.452 50.000 0.00 0.0 33.12 3.96 F
4397 4878 0.251341 GGACTGACCCCAACATGCTT 60.251 55.000 0.00 0.0 0.00 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1984 2044 0.179048 GCCGATCACCATCACCATCA 60.179 55.000 0.0 0.0 0.00 3.07 R
2373 2525 0.179140 CAGCCAACACCAACACACAC 60.179 55.000 0.0 0.0 0.00 3.82 R
3831 4307 2.552743 GTTTTTCTACTCCCAGGTGCAC 59.447 50.000 8.8 8.8 0.00 4.57 R
3924 4403 5.762179 TGTGAATGGGTCTGTCTAATCTT 57.238 39.130 0.0 0.0 0.00 2.40 R
4067 4548 0.238289 GTAACAATGCTGCGTGCTGT 59.762 50.000 0.0 0.0 43.37 4.40 R
4088 4569 6.701400 GTGTCTGGTTTTTCATAAGCAAATGT 59.299 34.615 0.0 0.0 35.35 2.71 R
4397 4878 1.182667 CGGAGGTGTAGGTGATGACA 58.817 55.000 0.0 0.0 0.00 3.58 R
4931 5412 0.621280 TCTCCTGGCCACCATGATCA 60.621 55.000 0.0 0.0 30.82 2.92 R
5583 6078 0.035725 TGTTCTGCCATCTGAGCTGG 60.036 55.000 0.0 0.0 36.81 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 3.401033 AAAAAGTGCAAAGGGGCATAC 57.599 42.857 0.00 0.00 46.92 2.39
27 28 2.008242 AAAGTGCAAAGGGGCATACA 57.992 45.000 0.00 0.00 46.92 2.29
28 29 2.008242 AAGTGCAAAGGGGCATACAA 57.992 45.000 0.00 0.00 46.92 2.41
29 30 1.549203 AGTGCAAAGGGGCATACAAG 58.451 50.000 0.00 0.00 46.92 3.16
30 31 1.203050 AGTGCAAAGGGGCATACAAGT 60.203 47.619 0.00 0.00 46.92 3.16
31 32 2.041081 AGTGCAAAGGGGCATACAAGTA 59.959 45.455 0.00 0.00 46.92 2.24
32 33 2.163613 GTGCAAAGGGGCATACAAGTAC 59.836 50.000 0.00 0.00 46.92 2.73
33 34 2.041081 TGCAAAGGGGCATACAAGTACT 59.959 45.455 0.00 0.00 39.25 2.73
34 35 3.089284 GCAAAGGGGCATACAAGTACTT 58.911 45.455 1.12 1.12 0.00 2.24
35 36 3.509967 GCAAAGGGGCATACAAGTACTTT 59.490 43.478 5.07 0.62 0.00 2.66
36 37 4.703093 GCAAAGGGGCATACAAGTACTTTA 59.297 41.667 5.07 2.93 0.00 1.85
37 38 5.163652 GCAAAGGGGCATACAAGTACTTTAG 60.164 44.000 5.07 0.00 0.00 1.85
38 39 6.177610 CAAAGGGGCATACAAGTACTTTAGA 58.822 40.000 5.07 0.00 0.00 2.10
39 40 6.382919 AAGGGGCATACAAGTACTTTAGAA 57.617 37.500 5.07 0.00 0.00 2.10
40 41 6.382919 AGGGGCATACAAGTACTTTAGAAA 57.617 37.500 5.07 0.00 0.00 2.52
41 42 6.970191 AGGGGCATACAAGTACTTTAGAAAT 58.030 36.000 5.07 0.00 0.00 2.17
42 43 8.097791 AGGGGCATACAAGTACTTTAGAAATA 57.902 34.615 5.07 0.00 0.00 1.40
43 44 8.211629 AGGGGCATACAAGTACTTTAGAAATAG 58.788 37.037 5.07 0.00 0.00 1.73
44 45 7.444487 GGGGCATACAAGTACTTTAGAAATAGG 59.556 40.741 5.07 0.00 0.00 2.57
45 46 7.444487 GGGCATACAAGTACTTTAGAAATAGGG 59.556 40.741 5.07 0.00 0.00 3.53
46 47 7.991460 GGCATACAAGTACTTTAGAAATAGGGT 59.009 37.037 5.07 0.00 0.00 4.34
47 48 9.043079 GCATACAAGTACTTTAGAAATAGGGTC 57.957 37.037 5.07 0.00 0.00 4.46
54 55 9.462606 AGTACTTTAGAAATAGGGTCATTTTGG 57.537 33.333 0.00 0.00 0.00 3.28
55 56 7.170393 ACTTTAGAAATAGGGTCATTTTGGC 57.830 36.000 0.00 0.00 0.00 4.52
56 57 5.828299 TTAGAAATAGGGTCATTTTGGCG 57.172 39.130 0.00 0.00 0.00 5.69
57 58 3.963129 AGAAATAGGGTCATTTTGGCGA 58.037 40.909 0.00 0.00 0.00 5.54
58 59 4.340617 AGAAATAGGGTCATTTTGGCGAA 58.659 39.130 0.00 0.00 0.00 4.70
59 60 4.956075 AGAAATAGGGTCATTTTGGCGAAT 59.044 37.500 0.00 0.00 0.00 3.34
60 61 6.126409 AGAAATAGGGTCATTTTGGCGAATA 58.874 36.000 0.00 0.00 0.00 1.75
61 62 6.605594 AGAAATAGGGTCATTTTGGCGAATAA 59.394 34.615 0.00 0.00 0.00 1.40
62 63 6.783708 AATAGGGTCATTTTGGCGAATAAA 57.216 33.333 0.00 0.00 0.00 1.40
63 64 6.976934 ATAGGGTCATTTTGGCGAATAAAT 57.023 33.333 0.00 0.00 0.00 1.40
64 65 8.472007 AATAGGGTCATTTTGGCGAATAAATA 57.528 30.769 0.00 0.00 0.00 1.40
65 66 6.144078 AGGGTCATTTTGGCGAATAAATAC 57.856 37.500 0.00 0.00 0.00 1.89
66 67 5.891551 AGGGTCATTTTGGCGAATAAATACT 59.108 36.000 0.00 0.00 0.00 2.12
67 68 5.977129 GGGTCATTTTGGCGAATAAATACTG 59.023 40.000 0.00 0.00 0.00 2.74
68 69 6.405397 GGGTCATTTTGGCGAATAAATACTGT 60.405 38.462 0.00 0.00 0.00 3.55
69 70 7.201750 GGGTCATTTTGGCGAATAAATACTGTA 60.202 37.037 0.00 0.00 0.00 2.74
70 71 7.855904 GGTCATTTTGGCGAATAAATACTGTAG 59.144 37.037 0.00 0.00 0.00 2.74
71 72 8.609176 GTCATTTTGGCGAATAAATACTGTAGA 58.391 33.333 0.00 0.00 0.00 2.59
72 73 9.337396 TCATTTTGGCGAATAAATACTGTAGAT 57.663 29.630 0.00 0.00 0.00 1.98
73 74 9.385902 CATTTTGGCGAATAAATACTGTAGATG 57.614 33.333 0.00 0.00 0.00 2.90
74 75 6.539649 TTGGCGAATAAATACTGTAGATGC 57.460 37.500 0.00 0.00 0.00 3.91
75 76 5.853936 TGGCGAATAAATACTGTAGATGCT 58.146 37.500 0.00 0.00 0.00 3.79
76 77 6.988522 TGGCGAATAAATACTGTAGATGCTA 58.011 36.000 0.00 0.00 0.00 3.49
77 78 7.611770 TGGCGAATAAATACTGTAGATGCTAT 58.388 34.615 0.00 0.00 0.00 2.97
78 79 7.545615 TGGCGAATAAATACTGTAGATGCTATG 59.454 37.037 0.00 0.00 0.00 2.23
79 80 7.759886 GGCGAATAAATACTGTAGATGCTATGA 59.240 37.037 0.00 0.00 0.00 2.15
80 81 8.802856 GCGAATAAATACTGTAGATGCTATGAG 58.197 37.037 0.00 0.00 0.00 2.90
81 82 9.295214 CGAATAAATACTGTAGATGCTATGAGG 57.705 37.037 0.00 0.00 0.00 3.86
85 86 6.691754 ATACTGTAGATGCTATGAGGATCG 57.308 41.667 2.78 0.00 46.14 3.69
86 87 3.761218 ACTGTAGATGCTATGAGGATCGG 59.239 47.826 2.78 0.00 46.14 4.18
87 88 3.761218 CTGTAGATGCTATGAGGATCGGT 59.239 47.826 2.78 0.00 46.14 4.69
88 89 3.759086 TGTAGATGCTATGAGGATCGGTC 59.241 47.826 2.78 0.00 46.14 4.79
89 90 2.881734 AGATGCTATGAGGATCGGTCA 58.118 47.619 0.00 0.00 46.14 4.02
90 91 2.824936 AGATGCTATGAGGATCGGTCAG 59.175 50.000 0.00 0.00 46.14 3.51
91 92 1.332195 TGCTATGAGGATCGGTCAGG 58.668 55.000 0.00 0.73 38.61 3.86
92 93 1.133482 TGCTATGAGGATCGGTCAGGA 60.133 52.381 0.00 0.00 38.61 3.86
93 94 1.271102 GCTATGAGGATCGGTCAGGAC 59.729 57.143 0.00 0.00 38.61 3.85
137 138 2.737252 CCAAGACGAGAAAGGTACAAGC 59.263 50.000 0.00 0.00 0.00 4.01
139 140 3.027974 AGACGAGAAAGGTACAAGCAC 57.972 47.619 0.00 0.00 0.00 4.40
394 421 3.936453 CGTCCACAGAAAAATAATCCGGA 59.064 43.478 6.61 6.61 0.00 5.14
415 442 4.504916 CGCTCTCGCCCTCCTGTG 62.505 72.222 0.00 0.00 0.00 3.66
515 547 1.530293 CCATTTCGATCTGCTGCTAGC 59.470 52.381 8.10 8.10 42.82 3.42
653 685 2.647949 CCCCTCCACCCTACCTCCT 61.648 68.421 0.00 0.00 0.00 3.69
716 759 2.126424 GCTTGCTGCTTGCTGCTC 60.126 61.111 21.38 9.87 43.37 4.26
733 776 2.352651 TGCTCGCTTGAATGATTGCTAC 59.647 45.455 0.00 0.00 0.00 3.58
790 833 4.944317 TCTCCAGCGACACCTATATCATAG 59.056 45.833 0.00 0.00 0.00 2.23
791 834 4.663334 TCCAGCGACACCTATATCATAGT 58.337 43.478 0.00 0.00 0.00 2.12
792 835 5.812286 TCCAGCGACACCTATATCATAGTA 58.188 41.667 0.00 0.00 0.00 1.82
856 899 1.208052 GTGTGGAAGAGCATGCTAGGA 59.792 52.381 22.74 0.00 0.00 2.94
938 981 2.558795 GCGAGCATCCACTATAGAGGAA 59.441 50.000 20.94 6.86 38.28 3.36
939 982 3.366883 GCGAGCATCCACTATAGAGGAAG 60.367 52.174 20.94 17.72 38.28 3.46
1180 1223 3.197790 CGATGCTGTTCCCGCCTG 61.198 66.667 0.00 0.00 0.00 4.85
1305 1351 2.194056 CTGGAAGGCATGCCGGAT 59.806 61.111 30.50 20.71 41.95 4.18
1361 1407 3.722295 CGGCGTCAACGGTTGCAT 61.722 61.111 15.89 0.00 40.23 3.96
1507 1553 2.954868 CGTCGCTGTCGCCCATAC 60.955 66.667 0.00 0.00 35.26 2.39
1624 1670 2.322422 GCATGCAGATGTCGTCGC 59.678 61.111 14.21 3.00 31.50 5.19
1702 1751 3.560239 CCACCGGATAGAGCTAGATCTGA 60.560 52.174 20.68 5.31 31.15 3.27
1983 2043 0.103208 GAGTCTCCGTAGCCACATGG 59.897 60.000 0.00 0.00 38.53 3.66
1984 2044 0.614979 AGTCTCCGTAGCCACATGGT 60.615 55.000 0.00 0.00 37.57 3.55
1985 2045 0.460284 GTCTCCGTAGCCACATGGTG 60.460 60.000 0.00 0.00 37.57 4.17
1986 2046 0.613572 TCTCCGTAGCCACATGGTGA 60.614 55.000 0.00 0.00 35.23 4.02
1987 2047 0.465705 CTCCGTAGCCACATGGTGAT 59.534 55.000 0.00 0.00 35.23 3.06
1988 2048 0.177836 TCCGTAGCCACATGGTGATG 59.822 55.000 0.00 0.00 35.23 3.07
1989 2049 0.815213 CCGTAGCCACATGGTGATGG 60.815 60.000 0.00 0.00 35.23 3.51
2026 2086 4.438797 CGCGAATATTTCTGAATTGCCAAG 59.561 41.667 0.00 0.00 0.00 3.61
2152 2212 3.565516 GCTAGTGTGCTTTTTAGTTGGC 58.434 45.455 0.00 0.00 0.00 4.52
2163 2223 5.163764 GCTTTTTAGTTGGCTGCAAAGTTTT 60.164 36.000 1.80 0.00 32.27 2.43
2169 2229 5.291971 AGTTGGCTGCAAAGTTTTCATTAG 58.708 37.500 0.50 0.00 0.00 1.73
2274 2426 6.476243 ACATCGCGTGTTCTTATTAACTTT 57.524 33.333 5.77 0.00 38.01 2.66
2275 2427 6.894828 ACATCGCGTGTTCTTATTAACTTTT 58.105 32.000 5.77 0.00 38.01 2.27
2276 2428 6.795114 ACATCGCGTGTTCTTATTAACTTTTG 59.205 34.615 5.77 0.00 38.01 2.44
2277 2429 6.528014 TCGCGTGTTCTTATTAACTTTTGA 57.472 33.333 5.77 0.00 0.00 2.69
2278 2430 7.124347 TCGCGTGTTCTTATTAACTTTTGAT 57.876 32.000 5.77 0.00 0.00 2.57
2279 2431 8.242085 TCGCGTGTTCTTATTAACTTTTGATA 57.758 30.769 5.77 0.00 0.00 2.15
2280 2432 8.875803 TCGCGTGTTCTTATTAACTTTTGATAT 58.124 29.630 5.77 0.00 0.00 1.63
2281 2433 9.144085 CGCGTGTTCTTATTAACTTTTGATATC 57.856 33.333 0.00 0.00 0.00 1.63
2300 2452 9.979897 TTGATATCTATTTATGATCCCTTTGGG 57.020 33.333 3.98 0.00 46.11 4.12
2301 2453 9.127560 TGATATCTATTTATGATCCCTTTGGGT 57.872 33.333 3.98 0.00 44.74 4.51
2302 2454 9.981460 GATATCTATTTATGATCCCTTTGGGTT 57.019 33.333 2.25 0.00 44.74 4.11
2305 2457 8.909423 TCTATTTATGATCCCTTTGGGTTTTT 57.091 30.769 2.25 0.00 44.74 1.94
2324 2476 2.676632 TTTTTCCTCGCCTATACGCA 57.323 45.000 0.00 0.00 0.00 5.24
2325 2477 2.902705 TTTTCCTCGCCTATACGCAT 57.097 45.000 0.00 0.00 0.00 4.73
2326 2478 4.325028 TTTTTCCTCGCCTATACGCATA 57.675 40.909 0.00 0.00 0.00 3.14
2327 2479 3.570926 TTTCCTCGCCTATACGCATAG 57.429 47.619 0.00 0.00 34.92 2.23
2328 2480 0.809385 TCCTCGCCTATACGCATAGC 59.191 55.000 0.00 0.00 33.95 2.97
2329 2481 0.811915 CCTCGCCTATACGCATAGCT 59.188 55.000 0.00 0.00 33.95 3.32
2330 2482 1.202582 CCTCGCCTATACGCATAGCTT 59.797 52.381 0.00 0.00 33.95 3.74
2331 2483 2.352814 CCTCGCCTATACGCATAGCTTT 60.353 50.000 0.00 0.00 33.95 3.51
2332 2484 2.663602 CTCGCCTATACGCATAGCTTTG 59.336 50.000 0.00 0.00 33.95 2.77
2333 2485 1.726791 CGCCTATACGCATAGCTTTGG 59.273 52.381 6.29 0.00 33.95 3.28
2334 2486 2.767505 GCCTATACGCATAGCTTTGGT 58.232 47.619 6.29 5.16 33.95 3.67
2335 2487 2.737252 GCCTATACGCATAGCTTTGGTC 59.263 50.000 6.29 0.00 33.95 4.02
2336 2488 3.555168 GCCTATACGCATAGCTTTGGTCT 60.555 47.826 6.29 0.00 33.95 3.85
2337 2489 4.632153 CCTATACGCATAGCTTTGGTCTT 58.368 43.478 6.29 0.00 33.95 3.01
2338 2490 5.779922 CCTATACGCATAGCTTTGGTCTTA 58.220 41.667 6.29 0.00 33.95 2.10
2339 2491 6.398918 CCTATACGCATAGCTTTGGTCTTAT 58.601 40.000 6.29 0.00 33.95 1.73
2340 2492 7.544622 CCTATACGCATAGCTTTGGTCTTATA 58.455 38.462 6.29 0.00 33.95 0.98
2341 2493 8.198109 CCTATACGCATAGCTTTGGTCTTATAT 58.802 37.037 6.29 0.00 33.95 0.86
2342 2494 7.834068 ATACGCATAGCTTTGGTCTTATATG 57.166 36.000 6.29 0.00 0.00 1.78
2343 2495 5.853936 ACGCATAGCTTTGGTCTTATATGA 58.146 37.500 6.29 0.00 0.00 2.15
2344 2496 5.696724 ACGCATAGCTTTGGTCTTATATGAC 59.303 40.000 9.70 9.70 36.31 3.06
2345 2497 5.928839 CGCATAGCTTTGGTCTTATATGACT 59.071 40.000 15.98 1.32 37.16 3.41
2346 2498 6.425114 CGCATAGCTTTGGTCTTATATGACTT 59.575 38.462 15.98 2.16 37.16 3.01
2347 2499 7.041780 CGCATAGCTTTGGTCTTATATGACTTT 60.042 37.037 15.98 2.42 37.16 2.66
2348 2500 8.072567 GCATAGCTTTGGTCTTATATGACTTTG 58.927 37.037 15.98 7.54 37.16 2.77
2349 2501 6.442513 AGCTTTGGTCTTATATGACTTTGC 57.557 37.500 15.98 14.33 37.16 3.68
2350 2502 6.183347 AGCTTTGGTCTTATATGACTTTGCT 58.817 36.000 15.98 15.76 37.16 3.91
2351 2503 7.338710 AGCTTTGGTCTTATATGACTTTGCTA 58.661 34.615 15.98 0.00 37.16 3.49
2352 2504 7.995488 AGCTTTGGTCTTATATGACTTTGCTAT 59.005 33.333 15.98 2.60 37.16 2.97
2353 2505 8.624776 GCTTTGGTCTTATATGACTTTGCTATT 58.375 33.333 15.98 0.00 37.16 1.73
2356 2508 9.461312 TTGGTCTTATATGACTTTGCTATTTGT 57.539 29.630 15.98 0.00 37.16 2.83
2357 2509 9.109393 TGGTCTTATATGACTTTGCTATTTGTC 57.891 33.333 15.98 0.00 37.16 3.18
2358 2510 8.276325 GGTCTTATATGACTTTGCTATTTGTCG 58.724 37.037 15.98 0.00 37.16 4.35
2359 2511 8.276325 GTCTTATATGACTTTGCTATTTGTCGG 58.724 37.037 10.70 0.00 34.39 4.79
2360 2512 7.985184 TCTTATATGACTTTGCTATTTGTCGGT 59.015 33.333 0.00 0.00 32.64 4.69
2361 2513 4.685169 ATGACTTTGCTATTTGTCGGTG 57.315 40.909 0.00 0.00 32.64 4.94
2362 2514 3.472652 TGACTTTGCTATTTGTCGGTGT 58.527 40.909 0.00 0.00 32.64 4.16
2363 2515 3.880490 TGACTTTGCTATTTGTCGGTGTT 59.120 39.130 0.00 0.00 32.64 3.32
2364 2516 4.336993 TGACTTTGCTATTTGTCGGTGTTT 59.663 37.500 0.00 0.00 32.64 2.83
2365 2517 5.163602 TGACTTTGCTATTTGTCGGTGTTTT 60.164 36.000 0.00 0.00 32.64 2.43
2366 2518 5.656480 ACTTTGCTATTTGTCGGTGTTTTT 58.344 33.333 0.00 0.00 0.00 1.94
2367 2519 5.518487 ACTTTGCTATTTGTCGGTGTTTTTG 59.482 36.000 0.00 0.00 0.00 2.44
2368 2520 4.640789 TGCTATTTGTCGGTGTTTTTGT 57.359 36.364 0.00 0.00 0.00 2.83
2369 2521 4.355437 TGCTATTTGTCGGTGTTTTTGTG 58.645 39.130 0.00 0.00 0.00 3.33
2370 2522 4.142359 TGCTATTTGTCGGTGTTTTTGTGT 60.142 37.500 0.00 0.00 0.00 3.72
2371 2523 4.206200 GCTATTTGTCGGTGTTTTTGTGTG 59.794 41.667 0.00 0.00 0.00 3.82
2372 2524 3.644884 TTTGTCGGTGTTTTTGTGTGT 57.355 38.095 0.00 0.00 0.00 3.72
2373 2525 2.620779 TGTCGGTGTTTTTGTGTGTG 57.379 45.000 0.00 0.00 0.00 3.82
2374 2526 1.880675 TGTCGGTGTTTTTGTGTGTGT 59.119 42.857 0.00 0.00 0.00 3.72
2375 2527 2.246789 GTCGGTGTTTTTGTGTGTGTG 58.753 47.619 0.00 0.00 0.00 3.82
2376 2528 1.880675 TCGGTGTTTTTGTGTGTGTGT 59.119 42.857 0.00 0.00 0.00 3.72
2377 2529 1.982223 CGGTGTTTTTGTGTGTGTGTG 59.018 47.619 0.00 0.00 0.00 3.82
2378 2530 2.605823 CGGTGTTTTTGTGTGTGTGTGT 60.606 45.455 0.00 0.00 0.00 3.72
2379 2531 2.728839 GGTGTTTTTGTGTGTGTGTGTG 59.271 45.455 0.00 0.00 0.00 3.82
2380 2532 3.376540 GTGTTTTTGTGTGTGTGTGTGT 58.623 40.909 0.00 0.00 0.00 3.72
2381 2533 3.799420 GTGTTTTTGTGTGTGTGTGTGTT 59.201 39.130 0.00 0.00 0.00 3.32
2382 2534 3.798878 TGTTTTTGTGTGTGTGTGTGTTG 59.201 39.130 0.00 0.00 0.00 3.33
2383 2535 2.713895 TTTGTGTGTGTGTGTGTTGG 57.286 45.000 0.00 0.00 0.00 3.77
2384 2536 1.610363 TTGTGTGTGTGTGTGTTGGT 58.390 45.000 0.00 0.00 0.00 3.67
2385 2537 0.877743 TGTGTGTGTGTGTGTTGGTG 59.122 50.000 0.00 0.00 0.00 4.17
2386 2538 0.878416 GTGTGTGTGTGTGTTGGTGT 59.122 50.000 0.00 0.00 0.00 4.16
2387 2539 1.268352 GTGTGTGTGTGTGTTGGTGTT 59.732 47.619 0.00 0.00 0.00 3.32
2388 2540 1.268079 TGTGTGTGTGTGTTGGTGTTG 59.732 47.619 0.00 0.00 0.00 3.33
2389 2541 0.884514 TGTGTGTGTGTTGGTGTTGG 59.115 50.000 0.00 0.00 0.00 3.77
2390 2542 0.457681 GTGTGTGTGTTGGTGTTGGC 60.458 55.000 0.00 0.00 0.00 4.52
2391 2543 0.610509 TGTGTGTGTTGGTGTTGGCT 60.611 50.000 0.00 0.00 0.00 4.75
2392 2544 0.179140 GTGTGTGTTGGTGTTGGCTG 60.179 55.000 0.00 0.00 0.00 4.85
2393 2545 0.610509 TGTGTGTTGGTGTTGGCTGT 60.611 50.000 0.00 0.00 0.00 4.40
2394 2546 0.179140 GTGTGTTGGTGTTGGCTGTG 60.179 55.000 0.00 0.00 0.00 3.66
2395 2547 1.226945 GTGTTGGTGTTGGCTGTGC 60.227 57.895 0.00 0.00 0.00 4.57
2396 2548 2.026014 GTTGGTGTTGGCTGTGCG 59.974 61.111 0.00 0.00 0.00 5.34
2397 2549 3.898509 TTGGTGTTGGCTGTGCGC 61.899 61.111 0.00 0.00 38.13 6.09
2399 2551 3.673484 GGTGTTGGCTGTGCGCAT 61.673 61.111 15.91 0.00 41.67 4.73
2400 2552 2.126734 GTGTTGGCTGTGCGCATC 60.127 61.111 15.91 8.33 41.67 3.91
2401 2553 3.364441 TGTTGGCTGTGCGCATCC 61.364 61.111 15.91 16.18 41.67 3.51
2402 2554 3.058160 GTTGGCTGTGCGCATCCT 61.058 61.111 15.91 0.00 41.67 3.24
2403 2555 1.745115 GTTGGCTGTGCGCATCCTA 60.745 57.895 15.91 10.75 41.67 2.94
2404 2556 1.002746 TTGGCTGTGCGCATCCTAA 60.003 52.632 15.91 6.48 41.67 2.69
2405 2557 1.305219 TTGGCTGTGCGCATCCTAAC 61.305 55.000 15.91 0.00 41.67 2.34
2406 2558 1.450312 GGCTGTGCGCATCCTAACT 60.450 57.895 15.91 0.00 41.67 2.24
2407 2559 1.026718 GGCTGTGCGCATCCTAACTT 61.027 55.000 15.91 0.00 41.67 2.66
2408 2560 0.804989 GCTGTGCGCATCCTAACTTT 59.195 50.000 15.91 0.00 38.92 2.66
2409 2561 2.006888 GCTGTGCGCATCCTAACTTTA 58.993 47.619 15.91 0.00 38.92 1.85
2410 2562 2.614057 GCTGTGCGCATCCTAACTTTAT 59.386 45.455 15.91 0.00 38.92 1.40
2411 2563 3.546815 GCTGTGCGCATCCTAACTTTATG 60.547 47.826 15.91 0.00 38.92 1.90
2412 2564 2.354510 TGTGCGCATCCTAACTTTATGC 59.645 45.455 15.91 0.00 42.02 3.14
2413 2565 2.354510 GTGCGCATCCTAACTTTATGCA 59.645 45.455 15.91 0.00 44.95 3.96
2414 2566 2.613595 TGCGCATCCTAACTTTATGCAG 59.386 45.455 5.66 1.87 44.95 4.41
2415 2567 2.872245 GCGCATCCTAACTTTATGCAGA 59.128 45.455 0.30 0.00 44.95 4.26
2416 2568 3.059325 GCGCATCCTAACTTTATGCAGAG 60.059 47.826 0.30 0.00 44.95 3.35
2417 2569 3.496130 CGCATCCTAACTTTATGCAGAGG 59.504 47.826 7.24 0.00 44.95 3.69
2418 2570 3.251972 GCATCCTAACTTTATGCAGAGGC 59.748 47.826 0.00 0.00 44.27 4.70
2419 2571 3.560636 TCCTAACTTTATGCAGAGGCC 57.439 47.619 0.00 0.00 40.13 5.19
2420 2572 2.158957 TCCTAACTTTATGCAGAGGCCG 60.159 50.000 0.00 0.00 40.13 6.13
2421 2573 2.213499 CTAACTTTATGCAGAGGCCGG 58.787 52.381 0.00 0.00 40.13 6.13
2422 2574 0.394352 AACTTTATGCAGAGGCCGGG 60.394 55.000 2.18 0.00 40.13 5.73
2423 2575 1.224592 CTTTATGCAGAGGCCGGGT 59.775 57.895 2.18 0.00 40.13 5.28
2424 2576 1.077787 TTTATGCAGAGGCCGGGTG 60.078 57.895 2.18 0.00 40.13 4.61
2425 2577 1.847798 TTTATGCAGAGGCCGGGTGT 61.848 55.000 2.18 0.00 40.13 4.16
2426 2578 2.535485 TTATGCAGAGGCCGGGTGTG 62.535 60.000 2.18 0.00 40.13 3.82
2433 2585 4.722700 GGCCGGGTGTGTGCTCAT 62.723 66.667 2.18 0.00 0.00 2.90
2434 2586 3.127533 GCCGGGTGTGTGCTCATC 61.128 66.667 2.18 0.00 0.00 2.92
2435 2587 2.436646 CCGGGTGTGTGCTCATCC 60.437 66.667 0.00 0.00 35.43 3.51
2436 2588 2.665000 CGGGTGTGTGCTCATCCT 59.335 61.111 10.97 0.00 36.53 3.24
2437 2589 1.742880 CGGGTGTGTGCTCATCCTG 60.743 63.158 10.97 9.10 36.53 3.86
2438 2590 1.376466 GGGTGTGTGCTCATCCTGT 59.624 57.895 10.97 0.00 35.85 4.00
2439 2591 0.250901 GGGTGTGTGCTCATCCTGTT 60.251 55.000 10.97 0.00 35.85 3.16
2440 2592 1.609208 GGTGTGTGCTCATCCTGTTT 58.391 50.000 0.00 0.00 0.00 2.83
2441 2593 1.267806 GGTGTGTGCTCATCCTGTTTG 59.732 52.381 0.00 0.00 0.00 2.93
2442 2594 0.953727 TGTGTGCTCATCCTGTTTGC 59.046 50.000 0.00 0.00 0.00 3.68
2443 2595 0.953727 GTGTGCTCATCCTGTTTGCA 59.046 50.000 0.00 0.00 0.00 4.08
2444 2596 1.542915 GTGTGCTCATCCTGTTTGCAT 59.457 47.619 0.00 0.00 36.04 3.96
2445 2597 1.814394 TGTGCTCATCCTGTTTGCATC 59.186 47.619 0.00 0.00 36.04 3.91
2446 2598 2.089980 GTGCTCATCCTGTTTGCATCT 58.910 47.619 0.00 0.00 36.04 2.90
2447 2599 2.097142 GTGCTCATCCTGTTTGCATCTC 59.903 50.000 0.00 0.00 36.04 2.75
2448 2600 2.026542 TGCTCATCCTGTTTGCATCTCT 60.027 45.455 0.00 0.00 0.00 3.10
2449 2601 3.015327 GCTCATCCTGTTTGCATCTCTT 58.985 45.455 0.00 0.00 0.00 2.85
2450 2602 3.181499 GCTCATCCTGTTTGCATCTCTTG 60.181 47.826 0.00 0.00 0.00 3.02
2451 2603 4.259356 CTCATCCTGTTTGCATCTCTTGA 58.741 43.478 0.00 0.00 0.00 3.02
2452 2604 4.851843 TCATCCTGTTTGCATCTCTTGAT 58.148 39.130 0.00 0.00 0.00 2.57
2466 2618 6.853720 CATCTCTTGATGCTTCATTTTGAGT 58.146 36.000 2.75 0.00 42.83 3.41
2467 2619 6.492007 TCTCTTGATGCTTCATTTTGAGTC 57.508 37.500 2.75 0.00 0.00 3.36
2468 2620 5.999600 TCTCTTGATGCTTCATTTTGAGTCA 59.000 36.000 2.75 0.00 0.00 3.41
2469 2621 6.487668 TCTCTTGATGCTTCATTTTGAGTCAA 59.512 34.615 0.08 0.08 0.00 3.18
2470 2622 7.176165 TCTCTTGATGCTTCATTTTGAGTCAAT 59.824 33.333 6.36 0.00 0.00 2.57
2471 2623 8.339344 TCTTGATGCTTCATTTTGAGTCAATA 57.661 30.769 6.36 1.98 0.00 1.90
2472 2624 8.795513 TCTTGATGCTTCATTTTGAGTCAATAA 58.204 29.630 6.36 4.84 0.00 1.40
2473 2625 9.414295 CTTGATGCTTCATTTTGAGTCAATAAA 57.586 29.630 6.36 0.00 0.00 1.40
2474 2626 9.761504 TTGATGCTTCATTTTGAGTCAATAAAA 57.238 25.926 6.36 0.00 0.00 1.52
2475 2627 9.932207 TGATGCTTCATTTTGAGTCAATAAAAT 57.068 25.926 6.36 0.85 37.06 1.82
2478 2630 9.761504 TGCTTCATTTTGAGTCAATAAAATTCA 57.238 25.926 6.36 0.00 35.07 2.57
2514 2666 4.668576 AACTTGTAGTGATGCAACATCG 57.331 40.909 0.00 0.00 0.00 3.84
2515 2667 2.416547 ACTTGTAGTGATGCAACATCGC 59.583 45.455 12.11 12.11 0.00 4.58
2538 2690 8.875803 TCGCGTGTTCTTATTAACTTTTGATAT 58.124 29.630 5.77 0.00 0.00 1.63
2571 2723 7.033185 GTGGTGTTTGTTGTGATATTTATCCC 58.967 38.462 0.00 0.00 31.71 3.85
2883 3225 4.827692 AGGCATTACAAGTCGTTGACATA 58.172 39.130 0.00 0.00 37.10 2.29
2958 3302 6.262720 GCTTAATTGAGGATGAAGCTTCTGAT 59.737 38.462 26.09 13.13 0.00 2.90
3125 3469 0.548031 ATCAACCCTCGGTCATGCAT 59.452 50.000 0.00 0.00 33.12 3.96
3177 3521 1.973281 GGGGGTGCACACATCACAG 60.973 63.158 22.94 0.00 28.80 3.66
3206 3556 6.869913 ACAGAGAAATAATTTGTGCCATTGTG 59.130 34.615 0.00 0.00 0.00 3.33
3222 3688 5.468072 GCCATTGTGTCTACCAAGATAGATG 59.532 44.000 0.00 0.00 33.78 2.90
3295 3761 2.684001 CATGCCATGCCACTTTGAAT 57.316 45.000 0.00 0.00 0.00 2.57
3370 3836 4.130857 GGCTAGATTGAGTTTAAGGCCTC 58.869 47.826 5.23 0.00 34.86 4.70
3478 3944 4.158764 AGTTTAGGTCTCAATCGACTGAGG 59.841 45.833 22.53 5.62 42.68 3.86
3486 3952 6.157211 GTCTCAATCGACTGAGGTTTTCTTA 58.843 40.000 22.53 0.00 42.68 2.10
3487 3953 6.814146 GTCTCAATCGACTGAGGTTTTCTTAT 59.186 38.462 22.53 0.00 42.68 1.73
3488 3954 7.974501 GTCTCAATCGACTGAGGTTTTCTTATA 59.025 37.037 22.53 0.00 42.68 0.98
3489 3955 8.696374 TCTCAATCGACTGAGGTTTTCTTATAT 58.304 33.333 22.53 0.00 42.68 0.86
3490 3956 9.319143 CTCAATCGACTGAGGTTTTCTTATATT 57.681 33.333 15.96 0.00 39.39 1.28
3652 4122 2.342179 GAGGAGCTCTCGACAAAAAGG 58.658 52.381 14.64 0.00 32.18 3.11
3653 4123 0.799393 GGAGCTCTCGACAAAAAGGC 59.201 55.000 14.64 0.00 0.00 4.35
3683 4153 4.097741 ACTGCTCAAATAGTGCACAAAACA 59.902 37.500 21.04 5.05 41.43 2.83
3687 4157 5.107375 GCTCAAATAGTGCACAAAACATTGG 60.107 40.000 21.04 7.73 36.75 3.16
3767 4242 3.382227 TGCAAGCCCTCATACATTTGATG 59.618 43.478 0.00 0.00 0.00 3.07
3831 4307 2.507339 AGTGTTTTTCCAATGTGCCG 57.493 45.000 0.00 0.00 0.00 5.69
3908 4387 7.174253 ACAAGTTGCACTTTTCCTAATCGATTA 59.826 33.333 16.69 16.69 36.03 1.75
3955 4435 1.133025 GACCCATTCACAAAGGCATCG 59.867 52.381 0.00 0.00 0.00 3.84
4067 4548 4.033709 AGGAGATTTTGGTAGCTAGCAGA 58.966 43.478 23.56 17.86 34.90 4.26
4090 4571 1.463056 GCACGCAGCATTGTTACTACA 59.537 47.619 0.00 0.00 44.79 2.74
4397 4878 0.251341 GGACTGACCCCAACATGCTT 60.251 55.000 0.00 0.00 0.00 3.91
4676 5157 0.832135 TGAAGGAGGAGACGTTGGCT 60.832 55.000 0.00 0.00 0.00 4.75
4868 5349 4.544689 CTCGCCGAGCTGGAGTCG 62.545 72.222 0.00 0.00 42.00 4.18
5038 5519 0.886490 AGCACGTTTGAGCAAGGGAG 60.886 55.000 0.00 0.00 33.73 4.30
5088 5577 1.269673 ACGCATACGGTTACACACACA 60.270 47.619 0.00 0.00 46.04 3.72
5374 5867 8.086522 TGTTTCTAGCTAAGAGTGTCGTTTATT 58.913 33.333 0.00 0.00 35.05 1.40
5375 5868 9.565213 GTTTCTAGCTAAGAGTGTCGTTTATTA 57.435 33.333 0.00 0.00 35.05 0.98
5445 5940 4.199310 TGAAAGTGTTTGGACAAGAGGAG 58.801 43.478 0.00 0.00 37.57 3.69
5485 5980 6.157904 GTGATGAGTGTGATAGATGGATGAG 58.842 44.000 0.00 0.00 0.00 2.90
5499 5994 0.386113 GATGAGTAGGAGACCCACGC 59.614 60.000 0.00 0.00 33.88 5.34
5662 6681 0.617820 GGGGAGGGAACACTAGCTGA 60.618 60.000 0.00 0.00 0.00 4.26
5679 6698 2.434428 CTGACCTCTTGCTTGCAAGAT 58.566 47.619 30.26 20.49 40.04 2.40
5958 6991 1.143813 ACCTGCATATGCCCTAGCTT 58.856 50.000 24.54 3.10 41.18 3.74
6034 7067 2.783135 CAGGGAGTATGTGTGCACTTT 58.217 47.619 19.41 5.22 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 2.703007 TGTATGCCCCTTTGCACTTTTT 59.297 40.909 0.00 0.00 45.48 1.94
7 8 2.324541 TGTATGCCCCTTTGCACTTTT 58.675 42.857 0.00 0.00 45.48 2.27
8 9 2.008242 TGTATGCCCCTTTGCACTTT 57.992 45.000 0.00 0.00 45.48 2.66
9 10 1.895131 CTTGTATGCCCCTTTGCACTT 59.105 47.619 0.00 0.00 45.48 3.16
10 11 1.203050 ACTTGTATGCCCCTTTGCACT 60.203 47.619 0.00 0.00 45.48 4.40
11 12 1.256812 ACTTGTATGCCCCTTTGCAC 58.743 50.000 0.00 0.00 45.48 4.57
12 13 2.041081 AGTACTTGTATGCCCCTTTGCA 59.959 45.455 0.00 0.00 46.94 4.08
13 14 2.723273 AGTACTTGTATGCCCCTTTGC 58.277 47.619 0.00 0.00 0.00 3.68
14 15 6.177610 TCTAAAGTACTTGTATGCCCCTTTG 58.822 40.000 9.34 0.00 0.00 2.77
15 16 6.382919 TCTAAAGTACTTGTATGCCCCTTT 57.617 37.500 9.34 0.00 0.00 3.11
16 17 6.382919 TTCTAAAGTACTTGTATGCCCCTT 57.617 37.500 9.34 0.00 0.00 3.95
17 18 6.382919 TTTCTAAAGTACTTGTATGCCCCT 57.617 37.500 9.34 0.00 0.00 4.79
18 19 7.444487 CCTATTTCTAAAGTACTTGTATGCCCC 59.556 40.741 9.34 0.00 0.00 5.80
19 20 7.444487 CCCTATTTCTAAAGTACTTGTATGCCC 59.556 40.741 9.34 0.00 0.00 5.36
20 21 7.991460 ACCCTATTTCTAAAGTACTTGTATGCC 59.009 37.037 9.34 0.00 0.00 4.40
21 22 8.959705 ACCCTATTTCTAAAGTACTTGTATGC 57.040 34.615 9.34 0.00 0.00 3.14
28 29 9.462606 CCAAAATGACCCTATTTCTAAAGTACT 57.537 33.333 0.00 0.00 30.33 2.73
29 30 8.188799 GCCAAAATGACCCTATTTCTAAAGTAC 58.811 37.037 0.00 0.00 30.33 2.73
30 31 7.066525 CGCCAAAATGACCCTATTTCTAAAGTA 59.933 37.037 0.00 0.00 30.33 2.24
31 32 6.127730 CGCCAAAATGACCCTATTTCTAAAGT 60.128 38.462 0.00 0.00 30.33 2.66
32 33 6.094881 TCGCCAAAATGACCCTATTTCTAAAG 59.905 38.462 0.00 0.00 30.33 1.85
33 34 5.946972 TCGCCAAAATGACCCTATTTCTAAA 59.053 36.000 0.00 0.00 30.33 1.85
34 35 5.502079 TCGCCAAAATGACCCTATTTCTAA 58.498 37.500 0.00 0.00 30.33 2.10
35 36 5.105567 TCGCCAAAATGACCCTATTTCTA 57.894 39.130 0.00 0.00 30.33 2.10
36 37 3.963129 TCGCCAAAATGACCCTATTTCT 58.037 40.909 0.00 0.00 30.33 2.52
37 38 4.712122 TTCGCCAAAATGACCCTATTTC 57.288 40.909 0.00 0.00 30.33 2.17
38 39 6.783708 TTATTCGCCAAAATGACCCTATTT 57.216 33.333 0.00 0.00 31.87 1.40
39 40 6.783708 TTTATTCGCCAAAATGACCCTATT 57.216 33.333 0.00 0.00 0.00 1.73
40 41 6.976934 ATTTATTCGCCAAAATGACCCTAT 57.023 33.333 0.00 0.00 0.00 2.57
41 42 7.012894 CAGTATTTATTCGCCAAAATGACCCTA 59.987 37.037 0.00 0.00 0.00 3.53
42 43 5.891551 AGTATTTATTCGCCAAAATGACCCT 59.108 36.000 0.00 0.00 0.00 4.34
43 44 5.977129 CAGTATTTATTCGCCAAAATGACCC 59.023 40.000 0.00 0.00 0.00 4.46
44 45 6.560711 ACAGTATTTATTCGCCAAAATGACC 58.439 36.000 0.00 0.00 0.00 4.02
45 46 8.609176 TCTACAGTATTTATTCGCCAAAATGAC 58.391 33.333 0.00 0.00 0.00 3.06
46 47 8.725405 TCTACAGTATTTATTCGCCAAAATGA 57.275 30.769 0.00 0.00 0.00 2.57
47 48 9.385902 CATCTACAGTATTTATTCGCCAAAATG 57.614 33.333 0.00 0.00 0.00 2.32
48 49 8.076178 GCATCTACAGTATTTATTCGCCAAAAT 58.924 33.333 0.00 0.00 0.00 1.82
49 50 7.282224 AGCATCTACAGTATTTATTCGCCAAAA 59.718 33.333 0.00 0.00 0.00 2.44
50 51 6.765989 AGCATCTACAGTATTTATTCGCCAAA 59.234 34.615 0.00 0.00 0.00 3.28
51 52 6.288294 AGCATCTACAGTATTTATTCGCCAA 58.712 36.000 0.00 0.00 0.00 4.52
52 53 5.853936 AGCATCTACAGTATTTATTCGCCA 58.146 37.500 0.00 0.00 0.00 5.69
53 54 7.759886 TCATAGCATCTACAGTATTTATTCGCC 59.240 37.037 0.00 0.00 0.00 5.54
54 55 8.689251 TCATAGCATCTACAGTATTTATTCGC 57.311 34.615 0.00 0.00 0.00 4.70
55 56 9.295214 CCTCATAGCATCTACAGTATTTATTCG 57.705 37.037 0.00 0.00 0.00 3.34
59 60 8.678199 CGATCCTCATAGCATCTACAGTATTTA 58.322 37.037 0.00 0.00 0.00 1.40
60 61 7.363355 CCGATCCTCATAGCATCTACAGTATTT 60.363 40.741 0.00 0.00 0.00 1.40
61 62 6.096141 CCGATCCTCATAGCATCTACAGTATT 59.904 42.308 0.00 0.00 0.00 1.89
62 63 5.592282 CCGATCCTCATAGCATCTACAGTAT 59.408 44.000 0.00 0.00 0.00 2.12
63 64 4.944317 CCGATCCTCATAGCATCTACAGTA 59.056 45.833 0.00 0.00 0.00 2.74
64 65 3.761218 CCGATCCTCATAGCATCTACAGT 59.239 47.826 0.00 0.00 0.00 3.55
65 66 3.761218 ACCGATCCTCATAGCATCTACAG 59.239 47.826 0.00 0.00 0.00 2.74
66 67 3.759086 GACCGATCCTCATAGCATCTACA 59.241 47.826 0.00 0.00 0.00 2.74
67 68 3.759086 TGACCGATCCTCATAGCATCTAC 59.241 47.826 0.00 0.00 0.00 2.59
68 69 4.013050 CTGACCGATCCTCATAGCATCTA 58.987 47.826 0.00 0.00 0.00 1.98
69 70 2.824936 CTGACCGATCCTCATAGCATCT 59.175 50.000 0.00 0.00 0.00 2.90
70 71 2.094286 CCTGACCGATCCTCATAGCATC 60.094 54.545 0.00 0.00 0.00 3.91
71 72 1.898472 CCTGACCGATCCTCATAGCAT 59.102 52.381 0.00 0.00 0.00 3.79
72 73 1.133482 TCCTGACCGATCCTCATAGCA 60.133 52.381 0.00 0.00 0.00 3.49
73 74 1.271102 GTCCTGACCGATCCTCATAGC 59.729 57.143 0.00 0.00 0.00 2.97
74 75 2.817258 GAGTCCTGACCGATCCTCATAG 59.183 54.545 0.00 0.00 0.00 2.23
75 76 2.174854 TGAGTCCTGACCGATCCTCATA 59.825 50.000 0.00 0.00 0.00 2.15
76 77 1.063642 TGAGTCCTGACCGATCCTCAT 60.064 52.381 0.00 0.00 0.00 2.90
77 78 0.331616 TGAGTCCTGACCGATCCTCA 59.668 55.000 0.00 0.00 0.00 3.86
78 79 1.028905 CTGAGTCCTGACCGATCCTC 58.971 60.000 0.00 0.00 0.00 3.71
79 80 0.396417 CCTGAGTCCTGACCGATCCT 60.396 60.000 0.00 0.00 0.00 3.24
80 81 0.395862 TCCTGAGTCCTGACCGATCC 60.396 60.000 0.00 0.00 0.00 3.36
81 82 1.028905 CTCCTGAGTCCTGACCGATC 58.971 60.000 0.00 0.00 0.00 3.69
82 83 0.333312 ACTCCTGAGTCCTGACCGAT 59.667 55.000 0.00 0.00 36.92 4.18
83 84 1.768349 ACTCCTGAGTCCTGACCGA 59.232 57.895 0.00 0.00 36.92 4.69
84 85 4.425099 ACTCCTGAGTCCTGACCG 57.575 61.111 0.00 0.00 36.92 4.79
92 93 2.363147 GAGGCCCGACTCCTGAGT 60.363 66.667 0.00 0.00 45.84 3.41
93 94 3.522731 CGAGGCCCGACTCCTGAG 61.523 72.222 0.00 0.00 41.76 3.35
106 107 2.125912 CGTCTTGGCTGACCGAGG 60.126 66.667 0.00 0.00 46.46 4.63
121 122 1.604693 CGGTGCTTGTACCTTTCTCGT 60.605 52.381 6.35 0.00 38.62 4.18
415 442 2.818132 CAGACGAGATCAGGGGGC 59.182 66.667 0.00 0.00 0.00 5.80
515 547 1.197721 CTTTACACCAAGCAAGCGAGG 59.802 52.381 4.63 4.63 0.00 4.63
653 685 3.302344 GCGGGGGCTGCAGAAAAA 61.302 61.111 20.43 0.00 35.55 1.94
716 759 3.374988 TGAAGGTAGCAATCATTCAAGCG 59.625 43.478 0.00 0.00 33.72 4.68
733 776 2.871022 CGATCTGCTTGGAGAATGAAGG 59.129 50.000 0.00 0.00 0.00 3.46
790 833 5.508200 AGCCGATTGAGCTAGCTATATAC 57.492 43.478 19.38 5.21 39.29 1.47
791 834 5.679894 GCAAGCCGATTGAGCTAGCTATATA 60.680 44.000 19.38 3.54 41.83 0.86
792 835 4.753233 CAAGCCGATTGAGCTAGCTATAT 58.247 43.478 19.38 13.87 41.83 0.86
856 899 1.134175 CCGCCAACCGCTCAATAATTT 59.866 47.619 0.00 0.00 35.03 1.82
897 940 1.002250 CGCAAGCAAGCAAGCAAGAG 61.002 55.000 8.92 0.00 36.85 2.85
898 941 1.008194 CGCAAGCAAGCAAGCAAGA 60.008 52.632 8.92 0.00 36.85 3.02
899 942 2.019951 CCGCAAGCAAGCAAGCAAG 61.020 57.895 8.92 0.00 36.85 4.01
900 943 2.027897 CCGCAAGCAAGCAAGCAA 59.972 55.556 8.92 0.00 36.85 3.91
901 944 4.651008 GCCGCAAGCAAGCAAGCA 62.651 61.111 8.92 0.00 42.97 3.91
903 946 3.940975 CTCGCCGCAAGCAAGCAAG 62.941 63.158 5.15 0.00 44.04 4.01
904 947 4.029186 CTCGCCGCAAGCAAGCAA 62.029 61.111 5.15 0.00 44.04 3.91
956 999 1.187087 AGGGTTCTCTACTCCTTGCG 58.813 55.000 0.00 0.00 0.00 4.85
958 1001 3.637769 AGCTAGGGTTCTCTACTCCTTG 58.362 50.000 0.00 0.00 32.04 3.61
959 1002 4.690539 GCTAGCTAGGGTTCTCTACTCCTT 60.691 50.000 22.10 0.00 32.04 3.36
960 1003 3.181437 GCTAGCTAGGGTTCTCTACTCCT 60.181 52.174 22.10 0.00 33.60 3.69
1277 1323 1.453928 CCTTCCAGGAATTCGGGGC 60.454 63.158 1.09 0.00 37.67 5.80
1305 1351 3.296851 CCGATTTTGGCCATGGCA 58.703 55.556 36.56 20.63 44.11 4.92
1356 1402 3.106986 GCCTCCGCCTCCTATGCAA 62.107 63.158 0.00 0.00 0.00 4.08
1360 1406 4.220163 TCCGCCTCCGCCTCCTAT 62.220 66.667 0.00 0.00 0.00 2.57
1361 1407 4.896829 CTCCGCCTCCGCCTCCTA 62.897 72.222 0.00 0.00 0.00 2.94
1507 1553 4.332637 CGGGTACGGGCGTATCGG 62.333 72.222 0.00 0.00 32.79 4.18
1624 1670 3.024043 GCTGTTGTTGTTGCGCGG 61.024 61.111 8.83 0.00 0.00 6.46
1702 1751 4.487714 TGATTTCTAGCTTGGATCGGTT 57.512 40.909 0.00 0.00 0.00 4.44
1805 1865 3.055094 AGAAGGGCGAATTAAAGAGCAGA 60.055 43.478 0.00 0.00 0.00 4.26
1862 1922 2.428890 ACTTCCTCACCTCGCTCTAATG 59.571 50.000 0.00 0.00 0.00 1.90
1983 2043 1.586422 CCGATCACCATCACCATCAC 58.414 55.000 0.00 0.00 0.00 3.06
1984 2044 0.179048 GCCGATCACCATCACCATCA 60.179 55.000 0.00 0.00 0.00 3.07
1985 2045 1.224069 CGCCGATCACCATCACCATC 61.224 60.000 0.00 0.00 0.00 3.51
1986 2046 1.227645 CGCCGATCACCATCACCAT 60.228 57.895 0.00 0.00 0.00 3.55
1987 2047 2.186644 CGCCGATCACCATCACCA 59.813 61.111 0.00 0.00 0.00 4.17
1988 2048 3.272334 GCGCCGATCACCATCACC 61.272 66.667 0.00 0.00 0.00 4.02
1989 2049 3.630148 CGCGCCGATCACCATCAC 61.630 66.667 0.00 0.00 0.00 3.06
2026 2086 1.354506 GATCGCACAGAGGCATTGC 59.645 57.895 0.00 0.00 0.00 3.56
2305 2457 2.676632 TGCGTATAGGCGAGGAAAAA 57.323 45.000 12.43 0.00 35.06 1.94
2306 2458 2.902705 ATGCGTATAGGCGAGGAAAA 57.097 45.000 12.43 0.00 35.06 2.29
2307 2459 2.352421 GCTATGCGTATAGGCGAGGAAA 60.352 50.000 20.19 0.00 37.37 3.13
2308 2460 1.201647 GCTATGCGTATAGGCGAGGAA 59.798 52.381 20.19 0.00 37.37 3.36
2309 2461 0.809385 GCTATGCGTATAGGCGAGGA 59.191 55.000 20.19 0.00 37.37 3.71
2310 2462 0.811915 AGCTATGCGTATAGGCGAGG 59.188 55.000 20.19 6.06 37.37 4.63
2311 2463 2.638556 AAGCTATGCGTATAGGCGAG 57.361 50.000 20.19 12.44 37.37 5.03
2312 2464 2.609491 CCAAAGCTATGCGTATAGGCGA 60.609 50.000 20.19 2.75 37.37 5.54
2313 2465 1.726791 CCAAAGCTATGCGTATAGGCG 59.273 52.381 20.19 0.00 37.37 5.52
2314 2466 2.737252 GACCAAAGCTATGCGTATAGGC 59.263 50.000 20.19 10.48 37.37 3.93
2315 2467 4.258702 AGACCAAAGCTATGCGTATAGG 57.741 45.455 20.19 8.18 37.37 2.57
2316 2468 9.025020 CATATAAGACCAAAGCTATGCGTATAG 57.975 37.037 15.40 15.40 39.44 1.31
2317 2469 8.745590 TCATATAAGACCAAAGCTATGCGTATA 58.254 33.333 0.00 0.00 0.00 1.47
2318 2470 7.545965 GTCATATAAGACCAAAGCTATGCGTAT 59.454 37.037 0.00 0.00 32.36 3.06
2319 2471 6.866770 GTCATATAAGACCAAAGCTATGCGTA 59.133 38.462 0.00 0.00 32.36 4.42
2320 2472 5.696724 GTCATATAAGACCAAAGCTATGCGT 59.303 40.000 0.00 0.00 32.36 5.24
2321 2473 5.928839 AGTCATATAAGACCAAAGCTATGCG 59.071 40.000 4.52 0.00 39.34 4.73
2322 2474 7.736447 AAGTCATATAAGACCAAAGCTATGC 57.264 36.000 4.52 0.00 39.34 3.14
2323 2475 8.072567 GCAAAGTCATATAAGACCAAAGCTATG 58.927 37.037 4.52 0.00 39.34 2.23
2324 2476 7.995488 AGCAAAGTCATATAAGACCAAAGCTAT 59.005 33.333 4.52 0.00 39.34 2.97
2325 2477 7.338710 AGCAAAGTCATATAAGACCAAAGCTA 58.661 34.615 4.52 0.00 39.34 3.32
2326 2478 6.183347 AGCAAAGTCATATAAGACCAAAGCT 58.817 36.000 4.52 6.76 39.34 3.74
2327 2479 6.442513 AGCAAAGTCATATAAGACCAAAGC 57.557 37.500 4.52 4.82 39.34 3.51
2330 2482 9.461312 ACAAATAGCAAAGTCATATAAGACCAA 57.539 29.630 4.52 0.00 39.34 3.67
2331 2483 9.109393 GACAAATAGCAAAGTCATATAAGACCA 57.891 33.333 4.52 0.00 39.34 4.02
2332 2484 8.276325 CGACAAATAGCAAAGTCATATAAGACC 58.724 37.037 4.52 0.00 39.34 3.85
2333 2485 8.276325 CCGACAAATAGCAAAGTCATATAAGAC 58.724 37.037 0.00 0.00 38.81 3.01
2334 2486 7.985184 ACCGACAAATAGCAAAGTCATATAAGA 59.015 33.333 0.00 0.00 0.00 2.10
2335 2487 8.064222 CACCGACAAATAGCAAAGTCATATAAG 58.936 37.037 0.00 0.00 0.00 1.73
2336 2488 7.551262 ACACCGACAAATAGCAAAGTCATATAA 59.449 33.333 0.00 0.00 0.00 0.98
2337 2489 7.045416 ACACCGACAAATAGCAAAGTCATATA 58.955 34.615 0.00 0.00 0.00 0.86
2338 2490 5.880332 ACACCGACAAATAGCAAAGTCATAT 59.120 36.000 0.00 0.00 0.00 1.78
2339 2491 5.242434 ACACCGACAAATAGCAAAGTCATA 58.758 37.500 0.00 0.00 0.00 2.15
2340 2492 4.072131 ACACCGACAAATAGCAAAGTCAT 58.928 39.130 0.00 0.00 0.00 3.06
2341 2493 3.472652 ACACCGACAAATAGCAAAGTCA 58.527 40.909 0.00 0.00 0.00 3.41
2342 2494 4.483476 AACACCGACAAATAGCAAAGTC 57.517 40.909 0.00 0.00 0.00 3.01
2343 2495 4.911514 AAACACCGACAAATAGCAAAGT 57.088 36.364 0.00 0.00 0.00 2.66
2344 2496 5.518487 ACAAAAACACCGACAAATAGCAAAG 59.482 36.000 0.00 0.00 0.00 2.77
2345 2497 5.289675 CACAAAAACACCGACAAATAGCAAA 59.710 36.000 0.00 0.00 0.00 3.68
2346 2498 4.800993 CACAAAAACACCGACAAATAGCAA 59.199 37.500 0.00 0.00 0.00 3.91
2347 2499 4.142359 ACACAAAAACACCGACAAATAGCA 60.142 37.500 0.00 0.00 0.00 3.49
2348 2500 4.206200 CACACAAAAACACCGACAAATAGC 59.794 41.667 0.00 0.00 0.00 2.97
2349 2501 5.229052 CACACACAAAAACACCGACAAATAG 59.771 40.000 0.00 0.00 0.00 1.73
2350 2502 5.096169 CACACACAAAAACACCGACAAATA 58.904 37.500 0.00 0.00 0.00 1.40
2351 2503 3.923461 CACACACAAAAACACCGACAAAT 59.077 39.130 0.00 0.00 0.00 2.32
2352 2504 3.243434 ACACACACAAAAACACCGACAAA 60.243 39.130 0.00 0.00 0.00 2.83
2353 2505 2.293677 ACACACACAAAAACACCGACAA 59.706 40.909 0.00 0.00 0.00 3.18
2354 2506 1.880675 ACACACACAAAAACACCGACA 59.119 42.857 0.00 0.00 0.00 4.35
2355 2507 2.246789 CACACACACAAAAACACCGAC 58.753 47.619 0.00 0.00 0.00 4.79
2356 2508 1.880675 ACACACACACAAAAACACCGA 59.119 42.857 0.00 0.00 0.00 4.69
2357 2509 1.982223 CACACACACACAAAAACACCG 59.018 47.619 0.00 0.00 0.00 4.94
2358 2510 2.728839 CACACACACACACAAAAACACC 59.271 45.455 0.00 0.00 0.00 4.16
2359 2511 3.376540 ACACACACACACACAAAAACAC 58.623 40.909 0.00 0.00 0.00 3.32
2360 2512 3.717400 ACACACACACACACAAAAACA 57.283 38.095 0.00 0.00 0.00 2.83
2361 2513 3.183373 CCAACACACACACACACAAAAAC 59.817 43.478 0.00 0.00 0.00 2.43
2362 2514 3.181475 ACCAACACACACACACACAAAAA 60.181 39.130 0.00 0.00 0.00 1.94
2363 2515 2.362397 ACCAACACACACACACACAAAA 59.638 40.909 0.00 0.00 0.00 2.44
2364 2516 1.957177 ACCAACACACACACACACAAA 59.043 42.857 0.00 0.00 0.00 2.83
2365 2517 1.268079 CACCAACACACACACACACAA 59.732 47.619 0.00 0.00 0.00 3.33
2366 2518 0.877743 CACCAACACACACACACACA 59.122 50.000 0.00 0.00 0.00 3.72
2367 2519 0.878416 ACACCAACACACACACACAC 59.122 50.000 0.00 0.00 0.00 3.82
2368 2520 1.268079 CAACACCAACACACACACACA 59.732 47.619 0.00 0.00 0.00 3.72
2369 2521 1.402194 CCAACACCAACACACACACAC 60.402 52.381 0.00 0.00 0.00 3.82
2370 2522 0.884514 CCAACACCAACACACACACA 59.115 50.000 0.00 0.00 0.00 3.72
2371 2523 0.457681 GCCAACACCAACACACACAC 60.458 55.000 0.00 0.00 0.00 3.82
2372 2524 0.610509 AGCCAACACCAACACACACA 60.611 50.000 0.00 0.00 0.00 3.72
2373 2525 0.179140 CAGCCAACACCAACACACAC 60.179 55.000 0.00 0.00 0.00 3.82
2374 2526 0.610509 ACAGCCAACACCAACACACA 60.611 50.000 0.00 0.00 0.00 3.72
2375 2527 0.179140 CACAGCCAACACCAACACAC 60.179 55.000 0.00 0.00 0.00 3.82
2376 2528 1.943116 GCACAGCCAACACCAACACA 61.943 55.000 0.00 0.00 0.00 3.72
2377 2529 1.226945 GCACAGCCAACACCAACAC 60.227 57.895 0.00 0.00 0.00 3.32
2378 2530 2.769539 CGCACAGCCAACACCAACA 61.770 57.895 0.00 0.00 0.00 3.33
2379 2531 2.026014 CGCACAGCCAACACCAAC 59.974 61.111 0.00 0.00 0.00 3.77
2380 2532 3.898509 GCGCACAGCCAACACCAA 61.899 61.111 0.30 0.00 40.81 3.67
2390 2542 3.546815 GCATAAAGTTAGGATGCGCACAG 60.547 47.826 14.90 0.00 36.89 3.66
2391 2543 2.354510 GCATAAAGTTAGGATGCGCACA 59.645 45.455 14.90 0.00 36.89 4.57
2392 2544 2.987046 GCATAAAGTTAGGATGCGCAC 58.013 47.619 14.90 6.86 36.89 5.34
2396 2548 3.251972 GCCTCTGCATAAAGTTAGGATGC 59.748 47.826 9.35 9.35 45.02 3.91
2397 2549 3.817647 GGCCTCTGCATAAAGTTAGGATG 59.182 47.826 0.00 0.00 40.13 3.51
2398 2550 3.495100 CGGCCTCTGCATAAAGTTAGGAT 60.495 47.826 0.00 0.00 40.13 3.24
2399 2551 2.158957 CGGCCTCTGCATAAAGTTAGGA 60.159 50.000 0.00 0.00 40.13 2.94
2400 2552 2.213499 CGGCCTCTGCATAAAGTTAGG 58.787 52.381 0.00 0.00 40.13 2.69
2401 2553 2.213499 CCGGCCTCTGCATAAAGTTAG 58.787 52.381 0.00 0.00 40.13 2.34
2402 2554 1.134220 CCCGGCCTCTGCATAAAGTTA 60.134 52.381 0.00 0.00 40.13 2.24
2403 2555 0.394352 CCCGGCCTCTGCATAAAGTT 60.394 55.000 0.00 0.00 40.13 2.66
2404 2556 1.224592 CCCGGCCTCTGCATAAAGT 59.775 57.895 0.00 0.00 40.13 2.66
2405 2557 1.097547 CACCCGGCCTCTGCATAAAG 61.098 60.000 0.00 0.00 40.13 1.85
2406 2558 1.077787 CACCCGGCCTCTGCATAAA 60.078 57.895 0.00 0.00 40.13 1.40
2407 2559 2.297895 ACACCCGGCCTCTGCATAA 61.298 57.895 0.00 0.00 40.13 1.90
2408 2560 2.687200 ACACCCGGCCTCTGCATA 60.687 61.111 0.00 0.00 40.13 3.14
2409 2561 4.415150 CACACCCGGCCTCTGCAT 62.415 66.667 0.00 0.00 40.13 3.96
2416 2568 4.722700 ATGAGCACACACCCGGCC 62.723 66.667 0.00 0.00 0.00 6.13
2417 2569 3.127533 GATGAGCACACACCCGGC 61.128 66.667 0.00 0.00 0.00 6.13
2418 2570 2.436646 GGATGAGCACACACCCGG 60.437 66.667 0.00 0.00 0.00 5.73
2419 2571 1.742880 CAGGATGAGCACACACCCG 60.743 63.158 5.79 0.00 39.69 5.28
2420 2572 0.250901 AACAGGATGAGCACACACCC 60.251 55.000 5.79 0.00 39.69 4.61
2421 2573 1.267806 CAAACAGGATGAGCACACACC 59.732 52.381 1.97 1.97 39.69 4.16
2422 2574 1.335324 GCAAACAGGATGAGCACACAC 60.335 52.381 0.00 0.00 39.69 3.82
2423 2575 0.953727 GCAAACAGGATGAGCACACA 59.046 50.000 0.00 0.00 39.69 3.72
2424 2576 0.953727 TGCAAACAGGATGAGCACAC 59.046 50.000 0.00 0.00 39.69 3.82
2425 2577 1.814394 GATGCAAACAGGATGAGCACA 59.186 47.619 0.00 0.00 42.26 4.57
2426 2578 2.089980 AGATGCAAACAGGATGAGCAC 58.910 47.619 0.00 0.00 42.26 4.40
2427 2579 2.026542 AGAGATGCAAACAGGATGAGCA 60.027 45.455 0.00 0.00 43.16 4.26
2428 2580 2.641305 AGAGATGCAAACAGGATGAGC 58.359 47.619 0.00 0.00 39.69 4.26
2429 2581 4.259356 TCAAGAGATGCAAACAGGATGAG 58.741 43.478 0.00 0.00 39.69 2.90
2430 2582 4.290711 TCAAGAGATGCAAACAGGATGA 57.709 40.909 0.00 0.00 39.69 2.92
2431 2583 4.921547 CATCAAGAGATGCAAACAGGATG 58.078 43.478 0.00 0.00 44.61 3.51
2443 2595 6.657966 TGACTCAAAATGAAGCATCAAGAGAT 59.342 34.615 15.92 5.58 39.49 2.75
2444 2596 5.999600 TGACTCAAAATGAAGCATCAAGAGA 59.000 36.000 15.92 4.61 39.49 3.10
2445 2597 6.250344 TGACTCAAAATGAAGCATCAAGAG 57.750 37.500 0.00 4.39 39.49 2.85
2446 2598 6.638096 TTGACTCAAAATGAAGCATCAAGA 57.362 33.333 0.00 0.00 39.49 3.02
2447 2599 8.975410 TTATTGACTCAAAATGAAGCATCAAG 57.025 30.769 0.00 0.00 39.49 3.02
2448 2600 9.761504 TTTTATTGACTCAAAATGAAGCATCAA 57.238 25.926 0.00 0.00 39.49 2.57
2449 2601 9.932207 ATTTTATTGACTCAAAATGAAGCATCA 57.068 25.926 0.00 0.00 40.57 3.07
2452 2604 9.761504 TGAATTTTATTGACTCAAAATGAAGCA 57.238 25.926 0.00 0.00 35.19 3.91
2490 2642 5.914635 CGATGTTGCATCACTACAAGTTTTT 59.085 36.000 0.00 0.00 37.55 1.94
2491 2643 5.451908 CGATGTTGCATCACTACAAGTTTT 58.548 37.500 0.00 0.00 37.55 2.43
2492 2644 4.613622 GCGATGTTGCATCACTACAAGTTT 60.614 41.667 0.00 0.00 37.55 2.66
2493 2645 3.120199 GCGATGTTGCATCACTACAAGTT 60.120 43.478 0.00 0.00 37.55 2.66
2494 2646 2.416547 GCGATGTTGCATCACTACAAGT 59.583 45.455 0.00 0.00 37.55 3.16
2495 2647 2.535534 CGCGATGTTGCATCACTACAAG 60.536 50.000 0.00 0.00 37.55 3.16
2496 2648 1.393196 CGCGATGTTGCATCACTACAA 59.607 47.619 0.00 0.00 37.55 2.41
2497 2649 0.998669 CGCGATGTTGCATCACTACA 59.001 50.000 0.00 0.00 38.39 2.74
2498 2650 0.999406 ACGCGATGTTGCATCACTAC 59.001 50.000 15.93 0.00 34.15 2.73
2499 2651 0.998669 CACGCGATGTTGCATCACTA 59.001 50.000 15.93 0.00 34.15 2.74
2500 2652 0.950555 ACACGCGATGTTGCATCACT 60.951 50.000 15.93 0.00 38.98 3.41
2501 2653 1.497278 ACACGCGATGTTGCATCAC 59.503 52.632 15.93 0.00 38.98 3.06
2502 2654 3.964718 ACACGCGATGTTGCATCA 58.035 50.000 15.93 0.00 38.98 3.07
2509 2661 6.476243 AAAGTTAATAAGAACACGCGATGT 57.524 33.333 15.93 11.14 46.42 3.06
2510 2662 7.012943 TCAAAAGTTAATAAGAACACGCGATG 58.987 34.615 15.93 10.38 0.00 3.84
2511 2663 7.124347 TCAAAAGTTAATAAGAACACGCGAT 57.876 32.000 15.93 0.00 0.00 4.58
2512 2664 6.528014 TCAAAAGTTAATAAGAACACGCGA 57.472 33.333 15.93 0.00 0.00 5.87
2513 2665 9.144085 GATATCAAAAGTTAATAAGAACACGCG 57.856 33.333 3.53 3.53 0.00 6.01
2538 2690 6.516739 TCACAACAAACACCACAAAATAGA 57.483 33.333 0.00 0.00 0.00 1.98
2599 2751 3.956199 CAATGGGGCAAGTTATCACTGAT 59.044 43.478 0.00 0.00 31.60 2.90
3258 3724 5.782047 GGCATGCTTAAATTATATGTGCCA 58.218 37.500 18.92 0.00 46.55 4.92
3260 3726 7.285783 CATGGCATGCTTAAATTATATGTGC 57.714 36.000 18.92 0.00 0.00 4.57
3320 3786 4.929211 GTGGGCCACTTGTTATTGAAAATC 59.071 41.667 29.22 0.00 0.00 2.17
3370 3836 6.198650 TCACATGTATGAGAATTTGCAAGG 57.801 37.500 0.00 0.00 0.00 3.61
3486 3952 9.971922 GCTTTTGAATTGGCTGATACTTAATAT 57.028 29.630 0.00 0.00 0.00 1.28
3487 3953 8.413229 GGCTTTTGAATTGGCTGATACTTAATA 58.587 33.333 0.00 0.00 0.00 0.98
3488 3954 7.267857 GGCTTTTGAATTGGCTGATACTTAAT 58.732 34.615 0.00 0.00 0.00 1.40
3489 3955 6.624861 CGGCTTTTGAATTGGCTGATACTTAA 60.625 38.462 0.00 0.00 33.39 1.85
3490 3956 5.163663 CGGCTTTTGAATTGGCTGATACTTA 60.164 40.000 0.00 0.00 33.39 2.24
3651 4121 4.860907 CACTATTTGAGCAGTGATTTTGCC 59.139 41.667 0.00 0.00 43.99 4.52
3652 4122 4.325472 GCACTATTTGAGCAGTGATTTTGC 59.675 41.667 5.93 0.00 43.99 3.68
3653 4123 5.344128 GTGCACTATTTGAGCAGTGATTTTG 59.656 40.000 10.32 0.00 43.99 2.44
3767 4242 6.072733 CCAAAATTTTGCGACATCAAACATC 58.927 36.000 22.90 0.00 35.86 3.06
3831 4307 2.552743 GTTTTTCTACTCCCAGGTGCAC 59.447 50.000 8.80 8.80 0.00 4.57
3924 4403 5.762179 TGTGAATGGGTCTGTCTAATCTT 57.238 39.130 0.00 0.00 0.00 2.40
4067 4548 0.238289 GTAACAATGCTGCGTGCTGT 59.762 50.000 0.00 0.00 43.37 4.40
4088 4569 6.701400 GTGTCTGGTTTTTCATAAGCAAATGT 59.299 34.615 0.00 0.00 35.35 2.71
4090 4571 7.054491 AGTGTCTGGTTTTTCATAAGCAAAT 57.946 32.000 0.00 0.00 35.35 2.32
4397 4878 1.182667 CGGAGGTGTAGGTGATGACA 58.817 55.000 0.00 0.00 0.00 3.58
4469 4950 0.878523 CGTTCTTGCCGTGGTGAGAA 60.879 55.000 3.10 3.10 0.00 2.87
4514 4995 1.221466 CGTTGTGCGAGCTCTTGGAA 61.221 55.000 12.85 0.00 44.77 3.53
4542 5023 3.563808 TCCTTGACGTTTTGATTCTGTGG 59.436 43.478 0.00 0.00 0.00 4.17
4591 5072 3.653009 TCGTCGCCGTCGTTGTCT 61.653 61.111 3.41 0.00 36.96 3.41
4676 5157 1.065764 CGCTTCCGACGATGATCCA 59.934 57.895 0.00 0.00 36.29 3.41
4742 5223 2.203379 TCACGGTGGTCGACCTGA 60.203 61.111 33.39 25.11 43.55 3.86
4823 5304 2.447244 AGTCAGCAAAGAAGTCCTCG 57.553 50.000 0.00 0.00 0.00 4.63
4868 5349 1.799933 AGATGAGACTCATGGGGTCC 58.200 55.000 22.64 7.04 37.20 4.46
4931 5412 0.621280 TCTCCTGGCCACCATGATCA 60.621 55.000 0.00 0.00 30.82 2.92
5038 5519 4.130857 GCCTCAAGTAATTTAGCCTCTCC 58.869 47.826 0.00 0.00 0.00 3.71
5088 5577 7.071698 TCAAGGTTATTTAGCTGGAGATCTCAT 59.928 37.037 23.85 9.52 34.09 2.90
5405 5900 9.263538 ACACTTTCAACATCGTTAAATAGTACA 57.736 29.630 0.00 0.00 0.00 2.90
5445 5940 0.107703 TCACGGCCCACATTGATCTC 60.108 55.000 0.00 0.00 0.00 2.75
5485 5980 2.363925 AGGGCGTGGGTCTCCTAC 60.364 66.667 0.00 0.00 0.00 3.18
5537 6032 4.241999 CAACGCTAGCGCATGCCC 62.242 66.667 35.63 2.30 44.31 5.36
5581 6076 1.134159 GTTCTGCCATCTGAGCTGGAT 60.134 52.381 6.50 0.00 35.70 3.41
5583 6078 0.035725 TGTTCTGCCATCTGAGCTGG 60.036 55.000 0.00 0.00 36.81 4.85
5622 6641 7.819500 TCCCCTATTTTGATTCAGATTCTCAT 58.180 34.615 0.00 0.00 0.00 2.90
5679 6698 2.849942 CGAATCCAACATATGCCCTCA 58.150 47.619 1.58 0.00 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.