Multiple sequence alignment - TraesCS2A01G442800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G442800 chr2A 100.000 7291 0 0 1 7291 692837643 692844933 0.000000e+00 13465.0
1 TraesCS2A01G442800 chr2A 94.712 416 22 0 172 587 22593728 22593313 0.000000e+00 647.0
2 TraesCS2A01G442800 chr2A 92.806 417 30 0 176 592 556285946 556285530 8.090000e-169 604.0
3 TraesCS2A01G442800 chr2A 85.882 85 7 2 1466 1549 692839033 692839113 1.300000e-12 86.1
4 TraesCS2A01G442800 chr2D 96.334 4473 147 9 2620 7079 552183860 552188328 0.000000e+00 7336.0
5 TraesCS2A01G442800 chr2D 91.182 1565 69 23 627 2152 552181738 552183272 0.000000e+00 2061.0
6 TraesCS2A01G442800 chr2D 94.964 417 19 2 2201 2617 552183372 552183786 0.000000e+00 652.0
7 TraesCS2A01G442800 chr2D 88.608 158 17 1 1 157 644643527 644643684 2.680000e-44 191.0
8 TraesCS2A01G442800 chr2D 87.975 158 18 1 1 157 587656555 587656712 1.250000e-42 185.0
9 TraesCS2A01G442800 chr2D 88.235 85 5 2 1466 1549 552182482 552182562 6.020000e-16 97.1
10 TraesCS2A01G442800 chr2B 94.877 4665 186 33 2620 7263 657814390 657819022 0.000000e+00 7241.0
11 TraesCS2A01G442800 chr2B 94.020 903 31 7 627 1525 657812185 657813068 0.000000e+00 1347.0
12 TraesCS2A01G442800 chr2B 85.731 855 57 15 1391 2201 657813005 657813838 0.000000e+00 843.0
13 TraesCS2A01G442800 chr2B 95.377 411 15 2 2201 2611 657813900 657814306 0.000000e+00 651.0
14 TraesCS2A01G442800 chr2B 83.217 286 33 7 7021 7291 657819484 657819769 1.570000e-61 248.0
15 TraesCS2A01G442800 chr6A 95.813 406 16 1 179 584 118285060 118285464 0.000000e+00 654.0
16 TraesCS2A01G442800 chr6A 95.000 160 7 1 1 159 602626673 602626514 4.370000e-62 250.0
17 TraesCS2A01G442800 chr6A 86.735 98 13 0 1374 1471 350839373 350839470 7.730000e-20 110.0
18 TraesCS2A01G442800 chr6A 86.735 98 13 0 1374 1471 369004335 369004238 7.730000e-20 110.0
19 TraesCS2A01G442800 chr5A 93.396 424 23 4 175 596 502172823 502172403 2.230000e-174 623.0
20 TraesCS2A01G442800 chr5A 91.228 114 9 1 47 159 14410961 14411074 3.520000e-33 154.0
21 TraesCS2A01G442800 chr5A 86.735 98 13 0 1374 1471 123979837 123979740 7.730000e-20 110.0
22 TraesCS2A01G442800 chr5A 83.077 65 9 1 1665 1727 648790704 648790768 2.840000e-04 58.4
23 TraesCS2A01G442800 chr1A 93.237 414 26 2 176 588 529254839 529255251 6.250000e-170 608.0
24 TraesCS2A01G442800 chr1A 93.154 409 28 0 180 588 277407280 277406872 1.050000e-167 601.0
25 TraesCS2A01G442800 chrUn 92.788 416 29 1 177 591 338567392 338566977 1.050000e-167 601.0
26 TraesCS2A01G442800 chrUn 92.788 416 29 1 177 591 338569987 338569572 1.050000e-167 601.0
27 TraesCS2A01G442800 chrUn 92.788 416 29 1 177 591 382096255 382095840 1.050000e-167 601.0
28 TraesCS2A01G442800 chr4D 97.500 160 3 1 1 159 97973131 97972972 9.320000e-69 272.0
29 TraesCS2A01G442800 chr4D 84.466 103 15 1 1370 1471 499482569 499482467 4.650000e-17 100.0
30 TraesCS2A01G442800 chr4D 91.489 47 2 2 579 623 97972954 97972908 6.110000e-06 63.9
31 TraesCS2A01G442800 chr6D 96.875 160 4 1 1 159 433498715 433498874 4.340000e-67 267.0
32 TraesCS2A01G442800 chr6D 93.617 47 1 2 579 623 433498892 433498938 1.310000e-07 69.4
33 TraesCS2A01G442800 chr7D 81.949 277 45 2 1471 1746 590520012 590520284 5.690000e-56 230.0
34 TraesCS2A01G442800 chr3A 92.500 160 11 1 1 159 12195153 12195312 2.050000e-55 228.0
35 TraesCS2A01G442800 chr7B 90.062 161 15 1 1 160 482068326 482068166 2.670000e-49 207.0
36 TraesCS2A01G442800 chr4B 89.103 156 16 1 1 155 664241595 664241440 7.460000e-45 193.0
37 TraesCS2A01G442800 chr5B 79.310 203 36 6 1548 1746 656719288 656719488 3.550000e-28 137.0
38 TraesCS2A01G442800 chr5B 82.353 119 17 4 1355 1471 602935471 602935587 4.650000e-17 100.0
39 TraesCS2A01G442800 chr6B 86.458 96 13 0 1376 1471 646403911 646403816 1.000000e-18 106.0
40 TraesCS2A01G442800 chr4A 82.906 117 17 3 1629 1744 632950664 632950778 1.290000e-17 102.0
41 TraesCS2A01G442800 chr3D 94.000 50 3 0 6181 6230 562671543 562671494 7.840000e-10 76.8
42 TraesCS2A01G442800 chr1D 96.774 31 1 0 1716 1746 385808565 385808595 1.300000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G442800 chr2A 692837643 692844933 7290 False 13465.000 13465 100.00000 1 7291 1 chr2A.!!$F1 7290
1 TraesCS2A01G442800 chr2D 552181738 552188328 6590 False 2536.525 7336 92.67875 627 7079 4 chr2D.!!$F3 6452
2 TraesCS2A01G442800 chr2B 657812185 657819769 7584 False 2066.000 7241 90.64440 627 7291 5 chr2B.!!$F1 6664
3 TraesCS2A01G442800 chrUn 338566977 338569987 3010 True 601.000 601 92.78800 177 591 2 chrUn.!!$R2 414

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
57 58 0.108186 TCGCTTAGGCATGTGTCCAG 60.108 55.000 0.00 0.00 38.60 3.86 F
58 59 0.108186 CGCTTAGGCATGTGTCCAGA 60.108 55.000 0.00 0.00 38.60 3.86 F
84 85 0.108585 AACACTTGGCCGATCTGTGT 59.891 50.000 10.09 10.09 42.68 3.72 F
479 481 0.249826 GCTGGAGCTAGATGACAGCC 60.250 60.000 18.62 0.00 46.47 4.85 F
1914 2016 0.250234 AAATGCGAGTGCTAGGCTGA 59.750 50.000 0.00 0.00 43.34 4.26 F
1915 2017 0.250234 AATGCGAGTGCTAGGCTGAA 59.750 50.000 0.00 0.00 43.34 3.02 F
1916 2018 0.250234 ATGCGAGTGCTAGGCTGAAA 59.750 50.000 0.00 0.00 43.34 2.69 F
1951 2062 0.400213 AGTCTTGGAATGGGCGTTGA 59.600 50.000 0.00 0.00 0.00 3.18 F
2930 3453 0.444260 GTCAGGTTCGCTTTAGCTGC 59.556 55.000 0.00 0.00 40.12 5.25 F
2944 3467 0.740164 AGCTGCTTCTGCTGTGATCG 60.740 55.000 0.00 0.00 37.28 3.69 F
3168 3691 0.916809 GGTTGGGGTACACATAGCCT 59.083 55.000 0.00 0.00 46.57 4.58 F
3773 4299 1.337917 GGGAGGGAGTTTGACGACTTC 60.338 57.143 0.00 0.00 0.00 3.01 F
4553 5144 1.432270 GCCTCGTTGCTACATGCCTC 61.432 60.000 0.00 0.00 42.00 4.70 F
5594 6643 0.038166 GTCAGAAGGCATGTGGGGAA 59.962 55.000 0.00 0.00 0.00 3.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1191 1193 0.099082 CGAGTAGCTTGACCGGAGTC 59.901 60.000 9.46 0.0 43.83 3.36 R
1926 2037 0.251297 CCCATTCCAAGACTGGCACA 60.251 55.000 0.00 0.0 43.17 4.57 R
2008 2119 1.131638 GACTATCCCACTGCCATGGA 58.868 55.000 18.40 0.0 43.02 3.41 R
2440 2800 3.294627 GTCGCGAATAAAAGCAGAAAACG 59.705 43.478 12.06 0.0 0.00 3.60 R
3104 3627 0.251297 AGCCTGCTATTTGTGCACCA 60.251 50.000 15.69 0.0 36.37 4.17 R
3736 4262 0.607489 CCCTGTGTCAGCAAAGAGGG 60.607 60.000 0.00 0.0 31.54 4.30 R
3773 4299 8.792830 TGTTTCTTGAGTAATATTCTGAAGGG 57.207 34.615 11.29 0.0 29.65 3.95 R
3916 4442 5.946972 TCACACTCTTTTGTTTTACCAAGGA 59.053 36.000 0.00 0.0 0.00 3.36 R
4694 5286 1.136828 AACAGTTCAGCCCCACACTA 58.863 50.000 0.00 0.0 0.00 2.74 R
4774 5366 5.051891 CTTCCATAAAAGAAGTGCACCAG 57.948 43.478 14.63 0.0 36.74 4.00 R
5123 5715 3.822940 ACCATCCTCTCCTAGTAAGACG 58.177 50.000 0.00 0.0 0.00 4.18 R
5207 5799 1.683319 GCCTTCCCCATTGGTCTCTTC 60.683 57.143 1.20 0.0 34.77 2.87 R
6157 7206 0.537143 TGTGACCAGCGGAATTGCTT 60.537 50.000 1.50 0.0 44.46 3.91 R
6803 7875 1.207329 ACTGAGGTCGATAAGGTTGCC 59.793 52.381 0.00 0.0 0.00 4.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.417426 TTCGGGAGAAGTCTTTGTCTTT 57.583 40.909 0.00 0.00 45.39 2.52
28 29 4.417426 TCGGGAGAAGTCTTTGTCTTTT 57.583 40.909 0.00 0.00 34.75 2.27
29 30 5.540400 TCGGGAGAAGTCTTTGTCTTTTA 57.460 39.130 0.00 0.00 34.75 1.52
30 31 6.110411 TCGGGAGAAGTCTTTGTCTTTTAT 57.890 37.500 0.00 0.00 34.75 1.40
31 32 6.531021 TCGGGAGAAGTCTTTGTCTTTTATT 58.469 36.000 0.00 0.00 34.75 1.40
32 33 6.996282 TCGGGAGAAGTCTTTGTCTTTTATTT 59.004 34.615 0.00 0.00 34.75 1.40
33 34 7.172703 TCGGGAGAAGTCTTTGTCTTTTATTTC 59.827 37.037 0.00 0.00 34.75 2.17
34 35 7.573283 CGGGAGAAGTCTTTGTCTTTTATTTCC 60.573 40.741 0.00 0.00 0.00 3.13
35 36 7.448777 GGGAGAAGTCTTTGTCTTTTATTTCCT 59.551 37.037 0.00 0.00 0.00 3.36
36 37 8.851145 GGAGAAGTCTTTGTCTTTTATTTCCTT 58.149 33.333 0.00 0.00 0.00 3.36
40 41 9.516314 AAGTCTTTGTCTTTTATTTCCTTTTCG 57.484 29.630 0.00 0.00 0.00 3.46
41 42 7.648112 AGTCTTTGTCTTTTATTTCCTTTTCGC 59.352 33.333 0.00 0.00 0.00 4.70
42 43 7.648112 GTCTTTGTCTTTTATTTCCTTTTCGCT 59.352 33.333 0.00 0.00 0.00 4.93
43 44 8.194769 TCTTTGTCTTTTATTTCCTTTTCGCTT 58.805 29.630 0.00 0.00 0.00 4.68
44 45 9.458374 CTTTGTCTTTTATTTCCTTTTCGCTTA 57.542 29.630 0.00 0.00 0.00 3.09
45 46 9.458374 TTTGTCTTTTATTTCCTTTTCGCTTAG 57.542 29.630 0.00 0.00 0.00 2.18
46 47 7.590279 TGTCTTTTATTTCCTTTTCGCTTAGG 58.410 34.615 0.00 0.00 0.00 2.69
47 48 6.527023 GTCTTTTATTTCCTTTTCGCTTAGGC 59.473 38.462 0.00 0.00 0.00 3.93
48 49 5.968528 TTTATTTCCTTTTCGCTTAGGCA 57.031 34.783 0.00 0.00 38.60 4.75
49 50 6.524101 TTTATTTCCTTTTCGCTTAGGCAT 57.476 33.333 0.00 0.00 38.60 4.40
50 51 3.848272 TTTCCTTTTCGCTTAGGCATG 57.152 42.857 0.00 0.00 38.60 4.06
51 52 2.489938 TCCTTTTCGCTTAGGCATGT 57.510 45.000 0.00 0.00 38.60 3.21
52 53 2.083774 TCCTTTTCGCTTAGGCATGTG 58.916 47.619 0.00 0.00 38.60 3.21
53 54 1.812571 CCTTTTCGCTTAGGCATGTGT 59.187 47.619 0.00 0.00 38.60 3.72
54 55 2.159517 CCTTTTCGCTTAGGCATGTGTC 60.160 50.000 0.00 0.00 38.60 3.67
55 56 1.448985 TTTCGCTTAGGCATGTGTCC 58.551 50.000 0.00 0.00 38.60 4.02
56 57 0.323302 TTCGCTTAGGCATGTGTCCA 59.677 50.000 0.00 0.00 38.60 4.02
57 58 0.108186 TCGCTTAGGCATGTGTCCAG 60.108 55.000 0.00 0.00 38.60 3.86
58 59 0.108186 CGCTTAGGCATGTGTCCAGA 60.108 55.000 0.00 0.00 38.60 3.86
59 60 1.473965 CGCTTAGGCATGTGTCCAGAT 60.474 52.381 0.00 0.00 38.60 2.90
60 61 2.224042 CGCTTAGGCATGTGTCCAGATA 60.224 50.000 0.00 0.00 38.60 1.98
61 62 3.397482 GCTTAGGCATGTGTCCAGATAG 58.603 50.000 0.00 0.00 38.54 2.08
62 63 3.805108 GCTTAGGCATGTGTCCAGATAGG 60.805 52.174 0.00 0.00 38.54 2.57
63 64 1.885049 AGGCATGTGTCCAGATAGGT 58.115 50.000 0.00 0.00 39.02 3.08
64 65 1.487976 AGGCATGTGTCCAGATAGGTG 59.512 52.381 0.00 0.00 39.02 4.00
65 66 1.486310 GGCATGTGTCCAGATAGGTGA 59.514 52.381 0.00 0.00 39.02 4.02
66 67 2.092968 GGCATGTGTCCAGATAGGTGAA 60.093 50.000 0.00 0.00 39.02 3.18
67 68 2.939103 GCATGTGTCCAGATAGGTGAAC 59.061 50.000 0.00 0.00 39.02 3.18
68 69 3.619733 GCATGTGTCCAGATAGGTGAACA 60.620 47.826 0.00 0.00 39.02 3.18
69 70 3.678056 TGTGTCCAGATAGGTGAACAC 57.322 47.619 0.00 0.00 40.98 3.32
70 71 3.239449 TGTGTCCAGATAGGTGAACACT 58.761 45.455 4.96 0.00 41.11 3.55
71 72 3.646162 TGTGTCCAGATAGGTGAACACTT 59.354 43.478 4.96 0.00 41.11 3.16
72 73 3.997021 GTGTCCAGATAGGTGAACACTTG 59.003 47.826 4.96 0.00 38.78 3.16
73 74 3.007940 TGTCCAGATAGGTGAACACTTGG 59.992 47.826 4.96 5.99 39.02 3.61
74 75 2.027192 TCCAGATAGGTGAACACTTGGC 60.027 50.000 4.96 0.00 39.02 4.52
75 76 2.359900 CAGATAGGTGAACACTTGGCC 58.640 52.381 0.00 0.00 0.00 5.36
76 77 1.066143 AGATAGGTGAACACTTGGCCG 60.066 52.381 0.00 0.00 0.00 6.13
77 78 0.981183 ATAGGTGAACACTTGGCCGA 59.019 50.000 0.00 0.00 0.00 5.54
78 79 0.981183 TAGGTGAACACTTGGCCGAT 59.019 50.000 0.00 0.00 0.00 4.18
79 80 0.321653 AGGTGAACACTTGGCCGATC 60.322 55.000 0.00 0.00 0.00 3.69
80 81 0.321653 GGTGAACACTTGGCCGATCT 60.322 55.000 0.00 0.00 0.00 2.75
81 82 0.798776 GTGAACACTTGGCCGATCTG 59.201 55.000 0.00 0.00 0.00 2.90
82 83 0.396435 TGAACACTTGGCCGATCTGT 59.604 50.000 0.00 0.00 0.00 3.41
83 84 0.798776 GAACACTTGGCCGATCTGTG 59.201 55.000 8.90 8.90 35.09 3.66
84 85 0.108585 AACACTTGGCCGATCTGTGT 59.891 50.000 10.09 10.09 42.68 3.72
85 86 0.603707 ACACTTGGCCGATCTGTGTG 60.604 55.000 14.18 10.91 39.90 3.82
86 87 1.672356 ACTTGGCCGATCTGTGTGC 60.672 57.895 0.00 0.00 0.00 4.57
87 88 2.359850 TTGGCCGATCTGTGTGCC 60.360 61.111 0.00 0.00 44.27 5.01
89 90 2.359850 GGCCGATCTGTGTGCCAA 60.360 61.111 0.00 0.00 43.46 4.52
90 91 2.401766 GGCCGATCTGTGTGCCAAG 61.402 63.158 0.00 0.00 43.46 3.61
91 92 1.375908 GCCGATCTGTGTGCCAAGA 60.376 57.895 0.00 0.00 0.00 3.02
92 93 0.955428 GCCGATCTGTGTGCCAAGAA 60.955 55.000 0.00 0.00 0.00 2.52
93 94 1.081892 CCGATCTGTGTGCCAAGAAG 58.918 55.000 0.00 0.00 0.00 2.85
94 95 1.081892 CGATCTGTGTGCCAAGAAGG 58.918 55.000 0.00 0.00 41.84 3.46
113 114 2.561733 GCTTCCGCCTTATTGGTTTC 57.438 50.000 0.00 0.00 38.35 2.78
114 115 1.202143 GCTTCCGCCTTATTGGTTTCG 60.202 52.381 0.00 0.00 38.35 3.46
115 116 1.400494 CTTCCGCCTTATTGGTTTCGG 59.600 52.381 0.00 0.00 39.38 4.30
116 117 0.614294 TCCGCCTTATTGGTTTCGGA 59.386 50.000 0.00 0.00 42.79 4.55
117 118 1.014352 CCGCCTTATTGGTTTCGGAG 58.986 55.000 0.00 0.00 40.10 4.63
118 119 1.677820 CCGCCTTATTGGTTTCGGAGT 60.678 52.381 0.00 0.00 40.10 3.85
119 120 1.396996 CGCCTTATTGGTTTCGGAGTG 59.603 52.381 0.00 0.00 38.35 3.51
120 121 1.132453 GCCTTATTGGTTTCGGAGTGC 59.868 52.381 0.00 0.00 38.35 4.40
121 122 2.711542 CCTTATTGGTTTCGGAGTGCT 58.288 47.619 0.00 0.00 0.00 4.40
122 123 2.420022 CCTTATTGGTTTCGGAGTGCTG 59.580 50.000 0.00 0.00 0.00 4.41
123 124 2.107950 TATTGGTTTCGGAGTGCTGG 57.892 50.000 0.00 0.00 0.00 4.85
124 125 1.244019 ATTGGTTTCGGAGTGCTGGC 61.244 55.000 0.00 0.00 0.00 4.85
125 126 2.032681 GGTTTCGGAGTGCTGGCT 59.967 61.111 0.00 0.00 0.00 4.75
126 127 1.600916 GGTTTCGGAGTGCTGGCTT 60.601 57.895 0.00 0.00 0.00 4.35
127 128 1.576421 GTTTCGGAGTGCTGGCTTG 59.424 57.895 0.00 0.00 0.00 4.01
128 129 0.884704 GTTTCGGAGTGCTGGCTTGA 60.885 55.000 0.00 0.00 0.00 3.02
129 130 0.603707 TTTCGGAGTGCTGGCTTGAG 60.604 55.000 0.00 0.00 0.00 3.02
130 131 2.435586 CGGAGTGCTGGCTTGAGG 60.436 66.667 0.00 0.00 0.00 3.86
131 132 2.947532 CGGAGTGCTGGCTTGAGGA 61.948 63.158 0.00 0.00 0.00 3.71
132 133 1.376553 GGAGTGCTGGCTTGAGGAC 60.377 63.158 0.00 0.00 34.65 3.85
133 134 1.676384 GAGTGCTGGCTTGAGGACT 59.324 57.895 5.12 5.12 46.36 3.85
134 135 0.673022 GAGTGCTGGCTTGAGGACTG 60.673 60.000 9.20 0.00 43.98 3.51
135 136 2.033141 TGCTGGCTTGAGGACTGC 59.967 61.111 0.00 0.00 46.37 4.40
136 137 2.749441 GCTGGCTTGAGGACTGCC 60.749 66.667 0.00 0.00 46.26 4.85
137 138 2.045536 CTGGCTTGAGGACTGCCC 60.046 66.667 0.00 0.00 45.56 5.36
145 146 3.827752 AGGACTGCCCTCCTTTCC 58.172 61.111 0.00 0.00 43.31 3.13
146 147 1.162085 AGGACTGCCCTCCTTTCCT 59.838 57.895 0.00 0.00 43.31 3.36
147 148 0.417841 AGGACTGCCCTCCTTTCCTA 59.582 55.000 0.00 0.00 43.31 2.94
148 149 0.833949 GGACTGCCCTCCTTTCCTAG 59.166 60.000 0.00 0.00 0.00 3.02
149 150 1.574263 GACTGCCCTCCTTTCCTAGT 58.426 55.000 0.00 0.00 0.00 2.57
150 151 1.909986 GACTGCCCTCCTTTCCTAGTT 59.090 52.381 0.00 0.00 0.00 2.24
151 152 3.105283 GACTGCCCTCCTTTCCTAGTTA 58.895 50.000 0.00 0.00 0.00 2.24
152 153 3.518303 GACTGCCCTCCTTTCCTAGTTAA 59.482 47.826 0.00 0.00 0.00 2.01
153 154 3.263681 ACTGCCCTCCTTTCCTAGTTAAC 59.736 47.826 0.00 0.00 0.00 2.01
154 155 3.253220 TGCCCTCCTTTCCTAGTTAACA 58.747 45.455 8.61 0.00 0.00 2.41
155 156 3.263425 TGCCCTCCTTTCCTAGTTAACAG 59.737 47.826 8.61 3.45 0.00 3.16
156 157 3.875125 CCCTCCTTTCCTAGTTAACAGC 58.125 50.000 8.61 0.00 0.00 4.40
157 158 3.370633 CCCTCCTTTCCTAGTTAACAGCC 60.371 52.174 8.61 0.00 0.00 4.85
158 159 3.519913 CCTCCTTTCCTAGTTAACAGCCT 59.480 47.826 8.61 0.00 0.00 4.58
159 160 4.508662 CTCCTTTCCTAGTTAACAGCCTG 58.491 47.826 8.61 0.00 0.00 4.85
160 161 3.908103 TCCTTTCCTAGTTAACAGCCTGT 59.092 43.478 8.61 0.00 0.00 4.00
161 162 4.003648 CCTTTCCTAGTTAACAGCCTGTG 58.996 47.826 8.61 0.00 0.00 3.66
162 163 4.505039 CCTTTCCTAGTTAACAGCCTGTGT 60.505 45.833 8.61 0.00 43.24 3.72
163 164 5.279809 CCTTTCCTAGTTAACAGCCTGTGTA 60.280 44.000 8.61 0.00 39.03 2.90
164 165 5.811796 TTCCTAGTTAACAGCCTGTGTAA 57.188 39.130 8.61 0.00 39.03 2.41
165 166 6.368779 TTCCTAGTTAACAGCCTGTGTAAT 57.631 37.500 8.61 0.00 39.03 1.89
166 167 6.368779 TCCTAGTTAACAGCCTGTGTAATT 57.631 37.500 8.61 0.00 39.03 1.40
167 168 7.484993 TCCTAGTTAACAGCCTGTGTAATTA 57.515 36.000 8.61 0.95 39.03 1.40
168 169 7.325694 TCCTAGTTAACAGCCTGTGTAATTAC 58.674 38.462 8.61 8.75 39.03 1.89
169 170 7.038870 TCCTAGTTAACAGCCTGTGTAATTACA 60.039 37.037 14.35 14.35 39.03 2.41
170 171 7.769044 CCTAGTTAACAGCCTGTGTAATTACAT 59.231 37.037 20.72 5.56 39.03 2.29
171 172 7.377766 AGTTAACAGCCTGTGTAATTACATG 57.622 36.000 20.72 16.09 39.03 3.21
172 173 4.701956 AACAGCCTGTGTAATTACATGC 57.298 40.909 20.72 20.86 39.03 4.06
174 175 5.097742 ACAGCCTGTGTAATTACATGCTA 57.902 39.130 26.26 13.51 46.26 3.49
175 176 4.876107 ACAGCCTGTGTAATTACATGCTAC 59.124 41.667 26.26 14.54 46.26 3.58
182 183 7.169982 CCTGTGTAATTACATGCTACTAAGAGC 59.830 40.741 20.72 4.61 43.16 4.09
217 218 3.181492 GCTCTGCTCCTTAAAATTCAGCC 60.181 47.826 0.00 0.00 0.00 4.85
218 219 3.356290 TCTGCTCCTTAAAATTCAGCCC 58.644 45.455 0.00 0.00 0.00 5.19
225 226 0.746563 TAAAATTCAGCCCCGCTCCG 60.747 55.000 0.00 0.00 36.40 4.63
226 227 2.478335 AAAATTCAGCCCCGCTCCGA 62.478 55.000 0.00 0.00 36.40 4.55
243 244 1.586123 CCGAAAAACACAAGCCAAACG 59.414 47.619 0.00 0.00 0.00 3.60
244 245 2.520979 CGAAAAACACAAGCCAAACGA 58.479 42.857 0.00 0.00 0.00 3.85
300 302 3.207044 AGAATCTGGGGTACAACTCCT 57.793 47.619 0.00 0.00 40.26 3.69
305 307 3.438183 TCTGGGGTACAACTCCTAGTTC 58.562 50.000 0.00 0.00 40.26 3.01
320 322 7.552459 ACTCCTAGTTCTTTATGAAGCTCTTC 58.448 38.462 2.80 2.80 39.91 2.87
372 374 6.409349 GCTAGAGTTAGGTGGAAATTACCCAT 60.409 42.308 0.00 0.00 39.05 4.00
402 404 3.454371 CAGTAAGTGGATACCCCTTCG 57.546 52.381 0.00 0.00 35.38 3.79
433 435 5.399497 CCCCCTCAACCAATCAAATAGATCT 60.399 44.000 0.00 0.00 35.39 2.75
479 481 0.249826 GCTGGAGCTAGATGACAGCC 60.250 60.000 18.62 0.00 46.47 4.85
493 495 4.572985 TGACAGCCAAACATTCTCTTTG 57.427 40.909 0.00 0.00 0.00 2.77
496 498 3.706086 ACAGCCAAACATTCTCTTTGGTT 59.294 39.130 10.76 3.15 46.54 3.67
502 504 6.208644 CCAAACATTCTCTTTGGTTGTACTG 58.791 40.000 0.00 0.00 41.91 2.74
503 505 6.183360 CCAAACATTCTCTTTGGTTGTACTGT 60.183 38.462 0.00 0.00 41.91 3.55
527 529 8.803235 TGTAACTTCTAGATGAAACTGCTCTAA 58.197 33.333 12.31 0.00 33.79 2.10
544 546 7.095017 ACTGCTCTAAAGTGAATTTAGTGAAGC 60.095 37.037 17.53 15.72 46.10 3.86
551 553 4.084013 AGTGAATTTAGTGAAGCGAAACCG 60.084 41.667 0.00 0.00 0.00 4.44
593 595 4.008074 CCTCAAACAGGCTCTAAGTCAA 57.992 45.455 0.00 0.00 34.56 3.18
595 597 5.734720 CCTCAAACAGGCTCTAAGTCAATA 58.265 41.667 0.00 0.00 34.56 1.90
596 598 6.173339 CCTCAAACAGGCTCTAAGTCAATAA 58.827 40.000 0.00 0.00 34.56 1.40
597 599 6.655003 CCTCAAACAGGCTCTAAGTCAATAAA 59.345 38.462 0.00 0.00 34.56 1.40
598 600 7.148340 CCTCAAACAGGCTCTAAGTCAATAAAG 60.148 40.741 0.00 0.00 34.56 1.85
601 603 5.423886 ACAGGCTCTAAGTCAATAAAGCTC 58.576 41.667 0.00 0.00 0.00 4.09
603 605 4.130857 GGCTCTAAGTCAATAAAGCTCCC 58.869 47.826 0.00 0.00 0.00 4.30
604 606 4.384208 GGCTCTAAGTCAATAAAGCTCCCA 60.384 45.833 0.00 0.00 0.00 4.37
610 612 8.548877 TCTAAGTCAATAAAGCTCCCATAAGTT 58.451 33.333 0.00 0.00 0.00 2.66
612 614 7.631717 AGTCAATAAAGCTCCCATAAGTTTC 57.368 36.000 0.00 0.00 0.00 2.78
613 615 7.406104 AGTCAATAAAGCTCCCATAAGTTTCT 58.594 34.615 0.00 0.00 0.00 2.52
614 616 7.337942 AGTCAATAAAGCTCCCATAAGTTTCTG 59.662 37.037 0.00 0.00 0.00 3.02
615 617 6.095440 TCAATAAAGCTCCCATAAGTTTCTGC 59.905 38.462 0.00 0.00 0.00 4.26
616 618 3.439857 AAGCTCCCATAAGTTTCTGCA 57.560 42.857 0.00 0.00 0.00 4.41
617 619 3.439857 AGCTCCCATAAGTTTCTGCAA 57.560 42.857 0.00 0.00 0.00 4.08
619 621 4.151883 AGCTCCCATAAGTTTCTGCAAAA 58.848 39.130 0.00 0.00 0.00 2.44
620 622 4.588528 AGCTCCCATAAGTTTCTGCAAAAA 59.411 37.500 0.00 0.00 0.00 1.94
658 660 6.459923 GGCCCACATGTCAGTTTTTATTTTA 58.540 36.000 0.00 0.00 0.00 1.52
659 661 7.102993 GGCCCACATGTCAGTTTTTATTTTAT 58.897 34.615 0.00 0.00 0.00 1.40
710 712 1.135257 CCGTCAACTGGTCTAGCTGAG 60.135 57.143 0.00 0.00 32.43 3.35
848 850 2.518825 CCCTAGCTCTACCGCCGT 60.519 66.667 0.00 0.00 0.00 5.68
987 989 3.021695 GGATTAGGTTAGGTTTGGTGGC 58.978 50.000 0.00 0.00 0.00 5.01
1152 1154 1.182385 GGAGGATAGTCGGGCAGGAG 61.182 65.000 0.00 0.00 0.00 3.69
1261 1263 6.289482 TCCTACCATTCCCTCTTCTATGTA 57.711 41.667 0.00 0.00 0.00 2.29
1313 1315 6.495526 AGATAAGAGATTGACCTAGGGTTAGC 59.504 42.308 14.81 0.00 35.25 3.09
1322 1324 4.219919 GACCTAGGGTTAGCTGATTCTCT 58.780 47.826 14.81 0.00 35.25 3.10
1323 1325 3.964031 ACCTAGGGTTAGCTGATTCTCTG 59.036 47.826 14.81 0.00 27.29 3.35
1324 1326 3.964031 CCTAGGGTTAGCTGATTCTCTGT 59.036 47.826 0.00 0.00 0.00 3.41
1332 1334 3.715495 AGCTGATTCTCTGTGCTATTCG 58.285 45.455 0.00 0.00 31.71 3.34
1370 1372 1.991813 TGGTTCAGGAATGACATGGGA 59.008 47.619 0.00 0.00 0.00 4.37
1406 1408 7.654520 CACTTTTTGATTCACAGGATTCACAAT 59.345 33.333 0.00 0.00 34.20 2.71
1474 1476 1.700955 TCCTATAGGGTTCGCAGGAC 58.299 55.000 18.97 0.00 36.25 3.85
1570 1655 6.769822 AGCATAGAGTATTTGATTTCACAGGG 59.230 38.462 0.00 0.00 0.00 4.45
1589 1674 7.039784 TCACAGGGAAATCAAAGGAATTGTAAG 60.040 37.037 0.00 0.00 40.11 2.34
1616 1701 2.827921 GTTGGAGTGGATGCTGGATTTT 59.172 45.455 0.00 0.00 0.00 1.82
1618 1703 2.041485 TGGAGTGGATGCTGGATTTTCA 59.959 45.455 0.00 0.00 0.00 2.69
1627 1712 5.007332 GGATGCTGGATTTTCAATGAAATGC 59.993 40.000 9.41 9.43 37.71 3.56
1637 1722 9.362539 GATTTTCAATGAAATGCAGTAGACATT 57.637 29.630 9.41 7.83 39.38 2.71
1690 1775 5.276868 CGATCCTATGAATCAAACGACCAAC 60.277 44.000 0.00 0.00 0.00 3.77
1691 1776 4.900684 TCCTATGAATCAAACGACCAACA 58.099 39.130 0.00 0.00 0.00 3.33
1704 1790 3.951680 ACGACCAACACAGGAAAAATTCT 59.048 39.130 0.00 0.00 0.00 2.40
1753 1855 2.402564 TGAAATTCCTTTGGGTTGCCA 58.597 42.857 0.00 0.00 0.00 4.92
1779 1881 6.837992 TCCAAACGCTATTAGATCAACAAAC 58.162 36.000 0.00 0.00 0.00 2.93
1782 1884 3.869246 ACGCTATTAGATCAACAAACGGG 59.131 43.478 0.00 0.00 0.00 5.28
1820 1922 8.276252 TGGGAACAAACTTTTATAGATACTGC 57.724 34.615 0.00 0.00 37.44 4.40
1845 1947 7.304735 CGACTTCCACATGTTTGAATAAATGA 58.695 34.615 0.00 0.00 0.00 2.57
1848 1950 9.426837 ACTTCCACATGTTTGAATAAATGATTG 57.573 29.630 0.00 0.00 0.00 2.67
1851 1953 8.760735 TCCACATGTTTGAATAAATGATTGGAT 58.239 29.630 0.00 0.00 0.00 3.41
1914 2016 0.250234 AAATGCGAGTGCTAGGCTGA 59.750 50.000 0.00 0.00 43.34 4.26
1915 2017 0.250234 AATGCGAGTGCTAGGCTGAA 59.750 50.000 0.00 0.00 43.34 3.02
1916 2018 0.250234 ATGCGAGTGCTAGGCTGAAA 59.750 50.000 0.00 0.00 43.34 2.69
1919 2021 2.093711 TGCGAGTGCTAGGCTGAAATAA 60.094 45.455 0.00 0.00 43.34 1.40
1920 2022 2.936498 GCGAGTGCTAGGCTGAAATAAA 59.064 45.455 0.00 0.00 38.39 1.40
1921 2023 3.374058 GCGAGTGCTAGGCTGAAATAAAA 59.626 43.478 0.00 0.00 38.39 1.52
1926 2037 5.711976 AGTGCTAGGCTGAAATAAAACATGT 59.288 36.000 0.00 0.00 0.00 3.21
1951 2062 0.400213 AGTCTTGGAATGGGCGTTGA 59.600 50.000 0.00 0.00 0.00 3.18
1963 2074 6.035975 GGAATGGGCGTTGAATGAAATAAAAG 59.964 38.462 0.00 0.00 0.00 2.27
2008 2119 5.014858 AGTTGATGTGCTGATTGGATTCTT 58.985 37.500 0.00 0.00 0.00 2.52
2111 2232 9.559732 TCTGTCTATTGGATTTATGGTGTATTG 57.440 33.333 0.00 0.00 0.00 1.90
2112 2233 9.559732 CTGTCTATTGGATTTATGGTGTATTGA 57.440 33.333 0.00 0.00 0.00 2.57
2113 2234 9.913310 TGTCTATTGGATTTATGGTGTATTGAA 57.087 29.630 0.00 0.00 0.00 2.69
2251 2611 4.823989 GGATTGGTGGATGAATTGGTAGAG 59.176 45.833 0.00 0.00 0.00 2.43
2252 2612 5.397899 GGATTGGTGGATGAATTGGTAGAGA 60.398 44.000 0.00 0.00 0.00 3.10
2253 2613 5.512942 TTGGTGGATGAATTGGTAGAGAA 57.487 39.130 0.00 0.00 0.00 2.87
2458 2818 2.914838 GGGCGTTTTCTGCTTTTATTCG 59.085 45.455 0.00 0.00 0.00 3.34
2480 2840 4.555313 CGCGACCTCATGAAAAATATGCAT 60.555 41.667 0.00 3.79 0.00 3.96
2486 2846 7.202526 ACCTCATGAAAAATATGCATTAACCG 58.797 34.615 3.54 0.00 0.00 4.44
2492 2852 1.909700 ATATGCATTAACCGGCCTGG 58.090 50.000 3.54 11.48 46.41 4.45
2536 2896 1.541588 CTCTTAACCTTGCCACCAAGC 59.458 52.381 0.00 0.00 45.65 4.01
2558 2918 2.811431 TGGCCACACTGATAAAAACTCG 59.189 45.455 0.00 0.00 0.00 4.18
2628 3063 2.738846 CAAATCTCACGACCAGTTCCTG 59.261 50.000 0.00 0.00 0.00 3.86
2679 3129 6.096846 GCAATTCCATGTAAGAACCCTTGTAT 59.903 38.462 0.00 0.00 33.94 2.29
2685 3135 2.851263 AAGAACCCTTGTATGCGTCA 57.149 45.000 0.00 0.00 0.00 4.35
2689 3139 1.198759 ACCCTTGTATGCGTCACCCT 61.199 55.000 0.00 0.00 0.00 4.34
2694 3144 3.431626 CCTTGTATGCGTCACCCTTGATA 60.432 47.826 0.00 0.00 33.11 2.15
2737 3187 7.042119 CCGTTGAAATAAAAGGCAACAAAATCT 60.042 33.333 0.00 0.00 40.32 2.40
2930 3453 0.444260 GTCAGGTTCGCTTTAGCTGC 59.556 55.000 0.00 0.00 40.12 5.25
2944 3467 0.740164 AGCTGCTTCTGCTGTGATCG 60.740 55.000 0.00 0.00 37.28 3.69
3038 3561 6.778821 TCATCTTGTCACCTTCCTAATCAAA 58.221 36.000 0.00 0.00 0.00 2.69
3084 3607 6.897966 TGTAGACATCTCTGATTCTTAGGGTT 59.102 38.462 0.00 0.00 0.00 4.11
3086 3609 5.068460 AGACATCTCTGATTCTTAGGGTTCG 59.932 44.000 0.00 0.00 0.00 3.95
3087 3610 4.712337 ACATCTCTGATTCTTAGGGTTCGT 59.288 41.667 0.00 0.00 0.00 3.85
3104 3627 5.008316 GGGTTCGTTTTCTACATCAACTTGT 59.992 40.000 0.00 0.00 0.00 3.16
3133 3656 3.377346 AATAGCAGGCTCATACAGTCG 57.623 47.619 0.00 0.00 0.00 4.18
3168 3691 0.916809 GGTTGGGGTACACATAGCCT 59.083 55.000 0.00 0.00 46.57 4.58
3311 3837 4.137116 TCGTGGATCCCAAGTATGAAAG 57.863 45.455 9.90 0.00 34.18 2.62
3314 3840 5.365605 TCGTGGATCCCAAGTATGAAAGTAT 59.634 40.000 9.90 0.00 34.18 2.12
3420 3946 2.928757 GCTGATTGCACAGAGTACTCAG 59.071 50.000 24.44 18.88 40.81 3.35
3496 4022 9.992910 TGATTCTTTCTGTAATGATTCATTTCG 57.007 29.630 16.62 8.71 35.54 3.46
3557 4083 6.928979 TCAAAACGTGTCAAGGAATTTAGA 57.071 33.333 0.00 0.00 0.00 2.10
3773 4299 1.337917 GGGAGGGAGTTTGACGACTTC 60.338 57.143 0.00 0.00 0.00 3.01
3874 4400 6.548441 AGATCTCAGCACTACTCGTTATAC 57.452 41.667 0.00 0.00 0.00 1.47
3916 4442 4.846940 ACAGAAAGGGGATAACTCTGTTCT 59.153 41.667 0.00 0.00 43.14 3.01
4079 4605 6.112058 GCAAGAAGGATCAAATGTAGAGAGT 58.888 40.000 0.00 0.00 0.00 3.24
4117 4643 5.942826 CAGCCCTGAAAAAGAGAAGATTAGT 59.057 40.000 0.00 0.00 0.00 2.24
4125 4651 7.173907 TGAAAAAGAGAAGATTAGTGGAAGCTG 59.826 37.037 0.00 0.00 32.89 4.24
4133 4659 6.959639 AGATTAGTGGAAGCTGTTTTTGAA 57.040 33.333 0.00 0.00 30.80 2.69
4448 5039 2.814336 AGAGCAAACATTTCCGGACTTC 59.186 45.455 1.83 0.00 0.00 3.01
4470 5061 4.807834 TCGTTGAGAAGCATGAATCTGATC 59.192 41.667 0.00 0.00 0.00 2.92
4511 5102 7.341512 TGTTCAGATACTGAGACAGAAGATGAT 59.658 37.037 5.76 0.00 41.75 2.45
4539 5130 1.795768 TCTGCAAAGTAAGTGCCTCG 58.204 50.000 0.00 0.00 41.49 4.63
4553 5144 1.432270 GCCTCGTTGCTACATGCCTC 61.432 60.000 0.00 0.00 42.00 4.70
4694 5286 9.398170 GATCATGCAATTATTTAGTTATGCGTT 57.602 29.630 0.00 0.00 36.62 4.84
4774 5366 5.551760 AGTGCTGTGTACATCTATTTTGC 57.448 39.130 0.00 0.00 0.00 3.68
4842 5434 9.698309 GCTTTGAGATATGCTAAGTATACTTGA 57.302 33.333 25.27 11.32 37.40 3.02
5008 5600 3.651423 GGGTATGCTAAGGTACAATCCCT 59.349 47.826 0.00 0.00 33.08 4.20
5135 5727 5.302568 TCCTCAACAAAACGTCTTACTAGGA 59.697 40.000 0.00 0.00 0.00 2.94
5336 6385 3.198409 ATTGATGCGTCTAGCCATCAA 57.802 42.857 23.30 23.30 46.56 2.57
5442 6491 7.415765 CGAGTCATTCAGGAGTTAACAGATACT 60.416 40.741 8.61 4.86 0.00 2.12
5594 6643 0.038166 GTCAGAAGGCATGTGGGGAA 59.962 55.000 0.00 0.00 0.00 3.97
5693 6742 3.388350 AGGTACAGGCTAACTATCAAGGC 59.612 47.826 0.00 0.00 38.50 4.35
5841 6890 1.814394 TGGAAAATAGCACAGCAGCAG 59.186 47.619 0.00 0.00 36.85 4.24
5898 6947 2.884639 CCAAGAGTCCCACGTTTGAATT 59.115 45.455 0.00 0.00 0.00 2.17
6101 7150 1.821061 CGCCTCACAGAGAAGGTGGT 61.821 60.000 0.00 0.00 36.90 4.16
6157 7206 5.191522 TGGGTGGTCTATTGAAATCAGATGA 59.808 40.000 0.00 0.00 0.00 2.92
6200 7249 0.684805 TCCCCGCAAAGGTTGTGTTT 60.685 50.000 1.30 0.00 39.46 2.83
6337 7386 2.649129 GGTTGGCATGGCTTGACCC 61.649 63.158 21.08 8.86 37.83 4.46
6425 7474 1.067565 TGTTGATCTCTGACTGTCCGC 60.068 52.381 5.17 0.00 0.00 5.54
6445 7494 0.600255 CCGGTGACTGGTGTGAAGAC 60.600 60.000 1.22 0.00 0.00 3.01
6446 7495 0.939577 CGGTGACTGGTGTGAAGACG 60.940 60.000 0.00 0.00 0.00 4.18
6560 7610 2.919494 CGTTTGGAACTGGCTGCCC 61.919 63.158 17.53 0.00 0.00 5.36
6671 7721 2.910319 ACAGCCCAACAGGTCAATAGTA 59.090 45.455 0.00 0.00 38.26 1.82
6672 7722 3.270877 CAGCCCAACAGGTCAATAGTAC 58.729 50.000 0.00 0.00 38.26 2.73
6673 7723 3.055094 CAGCCCAACAGGTCAATAGTACT 60.055 47.826 0.00 0.00 38.26 2.73
6678 7728 6.281405 CCCAACAGGTCAATAGTACTATGTC 58.719 44.000 16.11 9.30 0.00 3.06
6803 7875 3.243367 TGAACACAATCAAAGCTTTCCGG 60.243 43.478 9.23 0.00 0.00 5.14
6804 7876 1.613437 ACACAATCAAAGCTTTCCGGG 59.387 47.619 9.23 1.57 0.00 5.73
6805 7877 0.603065 ACAATCAAAGCTTTCCGGGC 59.397 50.000 9.23 0.00 0.00 6.13
6806 7878 0.602562 CAATCAAAGCTTTCCGGGCA 59.397 50.000 9.23 0.00 0.00 5.36
6807 7879 1.000731 CAATCAAAGCTTTCCGGGCAA 59.999 47.619 9.23 0.00 0.00 4.52
6822 7894 1.941325 GGCAACCTTATCGACCTCAG 58.059 55.000 0.00 0.00 0.00 3.35
6823 7895 1.207329 GGCAACCTTATCGACCTCAGT 59.793 52.381 0.00 0.00 0.00 3.41
6824 7896 2.429610 GGCAACCTTATCGACCTCAGTA 59.570 50.000 0.00 0.00 0.00 2.74
6825 7897 3.069729 GGCAACCTTATCGACCTCAGTAT 59.930 47.826 0.00 0.00 0.00 2.12
6826 7898 4.051922 GCAACCTTATCGACCTCAGTATG 58.948 47.826 0.00 0.00 37.54 2.39
6827 7899 4.441634 GCAACCTTATCGACCTCAGTATGT 60.442 45.833 0.00 0.00 37.40 2.29
6828 7900 5.282510 CAACCTTATCGACCTCAGTATGTC 58.717 45.833 0.00 0.00 37.40 3.06
6829 7901 4.533815 ACCTTATCGACCTCAGTATGTCA 58.466 43.478 0.00 0.00 37.40 3.58
6830 7902 4.954202 ACCTTATCGACCTCAGTATGTCAA 59.046 41.667 0.00 0.00 37.40 3.18
6831 7903 5.598830 ACCTTATCGACCTCAGTATGTCAAT 59.401 40.000 0.00 0.00 37.40 2.57
6832 7904 6.776116 ACCTTATCGACCTCAGTATGTCAATA 59.224 38.462 0.00 0.00 37.40 1.90
6890 7962 1.279527 TTGTTGCCATCGTCGTCGTC 61.280 55.000 1.33 0.00 38.33 4.20
6916 7988 9.459276 CGTTTGTTGTATTTTTCTTGTTTGAAG 57.541 29.630 0.00 0.00 0.00 3.02
6932 8004 5.244851 TGTTTGAAGCTGCCATGGTATTTTA 59.755 36.000 14.67 0.78 0.00 1.52
6933 8005 6.070881 TGTTTGAAGCTGCCATGGTATTTTAT 60.071 34.615 14.67 0.00 0.00 1.40
6952 8024 1.327690 TATCTGTCTGTCCCCCGTGC 61.328 60.000 0.00 0.00 0.00 5.34
7053 8830 0.984230 AGGCCGAATCAGTTGGAAGA 59.016 50.000 0.00 0.00 0.00 2.87
7060 8837 5.066505 GCCGAATCAGTTGGAAGATGTAAAT 59.933 40.000 0.00 0.00 0.00 1.40
7061 8838 6.260050 GCCGAATCAGTTGGAAGATGTAAATA 59.740 38.462 0.00 0.00 0.00 1.40
7062 8839 7.041098 GCCGAATCAGTTGGAAGATGTAAATAT 60.041 37.037 0.00 0.00 0.00 1.28
7081 8859 9.204570 GTAAATATCACTAGTCTGTGTTTGTGT 57.795 33.333 0.00 0.00 38.90 3.72
7093 8871 3.631686 TGTGTTTGTGTAGAGCAGCAAAT 59.368 39.130 0.00 0.00 33.84 2.32
7096 8874 4.215399 TGTTTGTGTAGAGCAGCAAATACC 59.785 41.667 0.00 0.00 33.84 2.73
7107 8885 0.451783 GCAAATACCTGGAAGTGGCG 59.548 55.000 0.00 0.00 0.00 5.69
7111 8889 1.956629 ATACCTGGAAGTGGCGGACG 61.957 60.000 0.00 0.00 0.00 4.79
7116 8894 2.338984 GAAGTGGCGGACGTGTCT 59.661 61.111 0.00 0.00 0.00 3.41
7124 8902 1.687494 GCGGACGTGTCTGATCTTGC 61.687 60.000 12.89 0.00 38.21 4.01
7125 8903 0.109086 CGGACGTGTCTGATCTTGCT 60.109 55.000 2.59 0.00 38.21 3.91
7129 8907 3.575630 GACGTGTCTGATCTTGCTGTTA 58.424 45.455 0.00 0.00 0.00 2.41
7130 8908 3.987868 GACGTGTCTGATCTTGCTGTTAA 59.012 43.478 0.00 0.00 0.00 2.01
7131 8909 4.377021 ACGTGTCTGATCTTGCTGTTAAA 58.623 39.130 0.00 0.00 0.00 1.52
7133 8911 5.140177 CGTGTCTGATCTTGCTGTTAAAAC 58.860 41.667 0.00 0.00 0.00 2.43
7135 8913 6.566564 CGTGTCTGATCTTGCTGTTAAAACAT 60.567 38.462 0.00 0.00 38.41 2.71
7136 8914 7.360017 CGTGTCTGATCTTGCTGTTAAAACATA 60.360 37.037 0.00 0.00 38.41 2.29
7137 8915 7.959651 GTGTCTGATCTTGCTGTTAAAACATAG 59.040 37.037 0.00 0.00 38.41 2.23
7138 8916 7.877612 TGTCTGATCTTGCTGTTAAAACATAGA 59.122 33.333 0.00 1.41 38.41 1.98
7139 8917 8.386606 GTCTGATCTTGCTGTTAAAACATAGAG 58.613 37.037 0.00 0.00 38.41 2.43
7140 8918 7.065085 TCTGATCTTGCTGTTAAAACATAGAGC 59.935 37.037 0.00 4.16 38.41 4.09
7149 8930 7.428282 TGTTAAAACATAGAGCGACATTTGA 57.572 32.000 0.00 0.00 33.17 2.69
7161 8942 6.534793 AGAGCGACATTTGAAATTTTGTGTTT 59.465 30.769 0.00 0.00 0.00 2.83
7168 8949 7.537991 ACATTTGAAATTTTGTGTTTGTTGCTG 59.462 29.630 0.00 0.00 0.00 4.41
7169 8950 6.551385 TTGAAATTTTGTGTTTGTTGCTGT 57.449 29.167 0.00 0.00 0.00 4.40
7181 8962 3.147553 TGTTGCTGTGGCTAATTACCA 57.852 42.857 3.51 3.51 39.59 3.25
7182 8963 3.696045 TGTTGCTGTGGCTAATTACCAT 58.304 40.909 9.18 0.00 39.95 3.55
7183 8964 3.443329 TGTTGCTGTGGCTAATTACCATG 59.557 43.478 9.18 7.42 39.95 3.66
7185 8966 3.016031 TGCTGTGGCTAATTACCATGTG 58.984 45.455 9.18 5.46 39.95 3.21
7188 8969 4.517285 CTGTGGCTAATTACCATGTGACT 58.483 43.478 9.18 0.00 39.95 3.41
7189 8970 4.260985 TGTGGCTAATTACCATGTGACTG 58.739 43.478 9.18 0.00 39.95 3.51
7190 8971 4.019771 TGTGGCTAATTACCATGTGACTGA 60.020 41.667 9.18 0.00 39.95 3.41
7193 8974 5.423931 TGGCTAATTACCATGTGACTGAGTA 59.576 40.000 0.00 0.00 30.29 2.59
7195 8976 6.821665 GGCTAATTACCATGTGACTGAGTAAA 59.178 38.462 0.00 0.00 0.00 2.01
7196 8977 7.335924 GGCTAATTACCATGTGACTGAGTAAAA 59.664 37.037 0.00 0.00 0.00 1.52
7197 8978 8.893727 GCTAATTACCATGTGACTGAGTAAAAT 58.106 33.333 0.00 0.00 0.00 1.82
7211 9003 8.850007 ACTGAGTAAAATACTTTCCTTTCCTC 57.150 34.615 0.00 0.00 39.59 3.71
7213 9005 9.508642 CTGAGTAAAATACTTTCCTTTCCTCTT 57.491 33.333 0.00 0.00 39.59 2.85
7223 9015 1.615384 CCTTTCCTCTTCAAGGCCCAG 60.615 57.143 0.00 0.00 45.78 4.45
7241 9033 2.127708 CAGCCCCCTTGATAACCTAGT 58.872 52.381 0.00 0.00 0.00 2.57
7242 9034 2.127708 AGCCCCCTTGATAACCTAGTG 58.872 52.381 0.00 0.00 0.00 2.74
7252 9044 6.719829 CCTTGATAACCTAGTGTTTTTCCCTT 59.280 38.462 2.53 0.00 38.42 3.95
7254 9046 6.607019 TGATAACCTAGTGTTTTTCCCTTGT 58.393 36.000 2.53 0.00 38.42 3.16
7255 9047 6.713450 TGATAACCTAGTGTTTTTCCCTTGTC 59.287 38.462 2.53 0.00 38.42 3.18
7256 9048 3.473625 ACCTAGTGTTTTTCCCTTGTCG 58.526 45.455 0.00 0.00 0.00 4.35
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.316987 ACAAAGACTTCTCCCGAATTTCAT 58.683 37.500 0.00 0.00 0.00 2.57
1 2 4.714632 ACAAAGACTTCTCCCGAATTTCA 58.285 39.130 0.00 0.00 0.00 2.69
2 3 4.998033 AGACAAAGACTTCTCCCGAATTTC 59.002 41.667 0.00 0.00 0.00 2.17
3 4 4.974399 AGACAAAGACTTCTCCCGAATTT 58.026 39.130 0.00 0.00 0.00 1.82
4 5 4.625607 AGACAAAGACTTCTCCCGAATT 57.374 40.909 0.00 0.00 0.00 2.17
5 6 4.625607 AAGACAAAGACTTCTCCCGAAT 57.374 40.909 0.00 0.00 0.00 3.34
6 7 4.417426 AAAGACAAAGACTTCTCCCGAA 57.583 40.909 0.00 0.00 0.00 4.30
7 8 4.417426 AAAAGACAAAGACTTCTCCCGA 57.583 40.909 0.00 0.00 0.00 5.14
8 9 6.803154 AATAAAAGACAAAGACTTCTCCCG 57.197 37.500 0.00 0.00 0.00 5.14
9 10 7.448777 AGGAAATAAAAGACAAAGACTTCTCCC 59.551 37.037 0.00 0.00 0.00 4.30
10 11 8.397575 AGGAAATAAAAGACAAAGACTTCTCC 57.602 34.615 0.00 0.00 0.00 3.71
14 15 9.516314 CGAAAAGGAAATAAAAGACAAAGACTT 57.484 29.630 0.00 0.00 0.00 3.01
15 16 7.648112 GCGAAAAGGAAATAAAAGACAAAGACT 59.352 33.333 0.00 0.00 0.00 3.24
16 17 7.648112 AGCGAAAAGGAAATAAAAGACAAAGAC 59.352 33.333 0.00 0.00 0.00 3.01
17 18 7.712797 AGCGAAAAGGAAATAAAAGACAAAGA 58.287 30.769 0.00 0.00 0.00 2.52
18 19 7.930513 AGCGAAAAGGAAATAAAAGACAAAG 57.069 32.000 0.00 0.00 0.00 2.77
19 20 9.458374 CTAAGCGAAAAGGAAATAAAAGACAAA 57.542 29.630 0.00 0.00 0.00 2.83
20 21 8.079809 CCTAAGCGAAAAGGAAATAAAAGACAA 58.920 33.333 0.00 0.00 34.58 3.18
21 22 7.590279 CCTAAGCGAAAAGGAAATAAAAGACA 58.410 34.615 0.00 0.00 34.58 3.41
22 23 6.527023 GCCTAAGCGAAAAGGAAATAAAAGAC 59.473 38.462 1.92 0.00 34.58 3.01
23 24 6.207810 TGCCTAAGCGAAAAGGAAATAAAAGA 59.792 34.615 1.92 0.00 44.31 2.52
24 25 6.386654 TGCCTAAGCGAAAAGGAAATAAAAG 58.613 36.000 1.92 0.00 44.31 2.27
25 26 6.334102 TGCCTAAGCGAAAAGGAAATAAAA 57.666 33.333 1.92 0.00 44.31 1.52
26 27 5.968528 TGCCTAAGCGAAAAGGAAATAAA 57.031 34.783 1.92 0.00 44.31 1.40
27 28 5.417580 ACATGCCTAAGCGAAAAGGAAATAA 59.582 36.000 0.00 0.00 44.31 1.40
28 29 4.947388 ACATGCCTAAGCGAAAAGGAAATA 59.053 37.500 0.00 0.00 44.31 1.40
29 30 3.763897 ACATGCCTAAGCGAAAAGGAAAT 59.236 39.130 0.00 0.00 44.31 2.17
30 31 3.057596 CACATGCCTAAGCGAAAAGGAAA 60.058 43.478 0.00 0.00 44.31 3.13
31 32 2.487762 CACATGCCTAAGCGAAAAGGAA 59.512 45.455 0.00 0.00 44.31 3.36
32 33 2.083774 CACATGCCTAAGCGAAAAGGA 58.916 47.619 0.00 0.00 44.31 3.36
33 34 1.812571 ACACATGCCTAAGCGAAAAGG 59.187 47.619 0.00 0.00 44.31 3.11
34 35 2.159517 GGACACATGCCTAAGCGAAAAG 60.160 50.000 0.00 0.00 44.31 2.27
35 36 1.810151 GGACACATGCCTAAGCGAAAA 59.190 47.619 0.00 0.00 44.31 2.29
36 37 1.271108 TGGACACATGCCTAAGCGAAA 60.271 47.619 0.00 0.00 44.31 3.46
37 38 0.323302 TGGACACATGCCTAAGCGAA 59.677 50.000 0.00 0.00 44.31 4.70
38 39 0.108186 CTGGACACATGCCTAAGCGA 60.108 55.000 0.00 0.00 44.31 4.93
39 40 0.108186 TCTGGACACATGCCTAAGCG 60.108 55.000 0.00 0.00 44.31 4.68
40 41 2.338577 ATCTGGACACATGCCTAAGC 57.661 50.000 0.00 0.00 40.48 3.09
41 42 3.389329 ACCTATCTGGACACATGCCTAAG 59.611 47.826 0.00 0.00 39.71 2.18
42 43 3.134623 CACCTATCTGGACACATGCCTAA 59.865 47.826 0.00 0.00 39.71 2.69
43 44 2.700371 CACCTATCTGGACACATGCCTA 59.300 50.000 0.00 0.00 39.71 3.93
44 45 1.487976 CACCTATCTGGACACATGCCT 59.512 52.381 0.00 0.00 39.71 4.75
45 46 1.486310 TCACCTATCTGGACACATGCC 59.514 52.381 0.00 0.00 39.71 4.40
46 47 2.939103 GTTCACCTATCTGGACACATGC 59.061 50.000 0.00 0.00 39.71 4.06
47 48 3.935203 GTGTTCACCTATCTGGACACATG 59.065 47.826 5.96 0.00 39.49 3.21
48 49 3.840666 AGTGTTCACCTATCTGGACACAT 59.159 43.478 12.23 0.00 41.11 3.21
49 50 3.239449 AGTGTTCACCTATCTGGACACA 58.761 45.455 12.23 0.68 41.11 3.72
50 51 3.963428 AGTGTTCACCTATCTGGACAC 57.037 47.619 2.96 2.96 39.80 3.67
51 52 3.007940 CCAAGTGTTCACCTATCTGGACA 59.992 47.826 0.00 0.00 39.71 4.02
52 53 3.600388 CCAAGTGTTCACCTATCTGGAC 58.400 50.000 0.00 0.00 39.71 4.02
53 54 2.027192 GCCAAGTGTTCACCTATCTGGA 60.027 50.000 0.00 0.00 39.71 3.86
54 55 2.359900 GCCAAGTGTTCACCTATCTGG 58.640 52.381 0.00 1.53 42.93 3.86
55 56 2.359900 GGCCAAGTGTTCACCTATCTG 58.640 52.381 0.00 0.00 0.00 2.90
56 57 1.066143 CGGCCAAGTGTTCACCTATCT 60.066 52.381 2.24 0.00 0.00 1.98
57 58 1.066430 TCGGCCAAGTGTTCACCTATC 60.066 52.381 2.24 0.00 0.00 2.08
58 59 0.981183 TCGGCCAAGTGTTCACCTAT 59.019 50.000 2.24 0.00 0.00 2.57
59 60 0.981183 ATCGGCCAAGTGTTCACCTA 59.019 50.000 2.24 0.00 0.00 3.08
60 61 0.321653 GATCGGCCAAGTGTTCACCT 60.322 55.000 2.24 0.00 0.00 4.00
61 62 0.321653 AGATCGGCCAAGTGTTCACC 60.322 55.000 2.24 0.00 0.00 4.02
62 63 0.798776 CAGATCGGCCAAGTGTTCAC 59.201 55.000 2.24 0.00 0.00 3.18
63 64 0.396435 ACAGATCGGCCAAGTGTTCA 59.604 50.000 2.24 0.00 0.00 3.18
64 65 0.798776 CACAGATCGGCCAAGTGTTC 59.201 55.000 2.24 0.00 0.00 3.18
65 66 0.108585 ACACAGATCGGCCAAGTGTT 59.891 50.000 2.24 0.00 40.20 3.32
66 67 0.603707 CACACAGATCGGCCAAGTGT 60.604 55.000 2.24 6.70 43.56 3.55
67 68 1.915614 GCACACAGATCGGCCAAGTG 61.916 60.000 2.24 6.01 36.34 3.16
68 69 1.672356 GCACACAGATCGGCCAAGT 60.672 57.895 2.24 0.00 0.00 3.16
69 70 2.401766 GGCACACAGATCGGCCAAG 61.402 63.158 2.24 0.00 45.70 3.61
70 71 2.359850 GGCACACAGATCGGCCAA 60.360 61.111 2.24 0.00 45.70 4.52
72 73 2.359850 TTGGCACACAGATCGGCC 60.360 61.111 0.00 0.00 46.58 6.13
73 74 0.955428 TTCTTGGCACACAGATCGGC 60.955 55.000 0.00 0.00 39.29 5.54
74 75 1.081892 CTTCTTGGCACACAGATCGG 58.918 55.000 0.00 0.00 39.29 4.18
75 76 1.081892 CCTTCTTGGCACACAGATCG 58.918 55.000 0.00 0.00 39.29 3.69
95 96 1.400494 CCGAAACCAATAAGGCGGAAG 59.600 52.381 0.00 0.00 41.46 3.46
96 97 1.003349 TCCGAAACCAATAAGGCGGAA 59.997 47.619 0.00 0.00 43.64 4.30
97 98 0.614294 TCCGAAACCAATAAGGCGGA 59.386 50.000 0.00 0.00 44.15 5.54
98 99 1.014352 CTCCGAAACCAATAAGGCGG 58.986 55.000 0.00 0.00 43.14 6.13
99 100 1.396996 CACTCCGAAACCAATAAGGCG 59.603 52.381 0.00 0.00 43.14 5.52
100 101 1.132453 GCACTCCGAAACCAATAAGGC 59.868 52.381 0.00 0.00 43.14 4.35
101 102 2.420022 CAGCACTCCGAAACCAATAAGG 59.580 50.000 0.00 0.00 45.67 2.69
102 103 2.420022 CCAGCACTCCGAAACCAATAAG 59.580 50.000 0.00 0.00 0.00 1.73
103 104 2.432444 CCAGCACTCCGAAACCAATAA 58.568 47.619 0.00 0.00 0.00 1.40
104 105 1.948611 GCCAGCACTCCGAAACCAATA 60.949 52.381 0.00 0.00 0.00 1.90
105 106 1.244019 GCCAGCACTCCGAAACCAAT 61.244 55.000 0.00 0.00 0.00 3.16
106 107 1.896660 GCCAGCACTCCGAAACCAA 60.897 57.895 0.00 0.00 0.00 3.67
107 108 2.281484 GCCAGCACTCCGAAACCA 60.281 61.111 0.00 0.00 0.00 3.67
108 109 1.600916 AAGCCAGCACTCCGAAACC 60.601 57.895 0.00 0.00 0.00 3.27
109 110 0.884704 TCAAGCCAGCACTCCGAAAC 60.885 55.000 0.00 0.00 0.00 2.78
110 111 0.603707 CTCAAGCCAGCACTCCGAAA 60.604 55.000 0.00 0.00 0.00 3.46
111 112 1.004560 CTCAAGCCAGCACTCCGAA 60.005 57.895 0.00 0.00 0.00 4.30
112 113 2.659016 CTCAAGCCAGCACTCCGA 59.341 61.111 0.00 0.00 0.00 4.55
113 114 2.435586 CCTCAAGCCAGCACTCCG 60.436 66.667 0.00 0.00 0.00 4.63
114 115 1.376553 GTCCTCAAGCCAGCACTCC 60.377 63.158 0.00 0.00 0.00 3.85
115 116 0.673022 CAGTCCTCAAGCCAGCACTC 60.673 60.000 0.00 0.00 0.00 3.51
116 117 1.374190 CAGTCCTCAAGCCAGCACT 59.626 57.895 0.00 0.00 0.00 4.40
117 118 2.331132 GCAGTCCTCAAGCCAGCAC 61.331 63.158 0.00 0.00 0.00 4.40
118 119 2.033141 GCAGTCCTCAAGCCAGCA 59.967 61.111 0.00 0.00 0.00 4.41
129 130 0.833949 CTAGGAAAGGAGGGCAGTCC 59.166 60.000 0.00 0.00 36.79 3.85
130 131 1.574263 ACTAGGAAAGGAGGGCAGTC 58.426 55.000 0.00 0.00 0.00 3.51
131 132 2.046280 AACTAGGAAAGGAGGGCAGT 57.954 50.000 0.00 0.00 0.00 4.40
132 133 3.263425 TGTTAACTAGGAAAGGAGGGCAG 59.737 47.826 7.22 0.00 0.00 4.85
133 134 3.253220 TGTTAACTAGGAAAGGAGGGCA 58.747 45.455 7.22 0.00 0.00 5.36
134 135 3.875125 CTGTTAACTAGGAAAGGAGGGC 58.125 50.000 7.22 0.00 0.00 5.19
135 136 3.370633 GGCTGTTAACTAGGAAAGGAGGG 60.371 52.174 7.22 0.00 0.00 4.30
136 137 3.519913 AGGCTGTTAACTAGGAAAGGAGG 59.480 47.826 7.22 0.00 0.00 4.30
137 138 4.020128 ACAGGCTGTTAACTAGGAAAGGAG 60.020 45.833 15.88 0.00 0.00 3.69
138 139 3.908103 ACAGGCTGTTAACTAGGAAAGGA 59.092 43.478 15.88 0.00 0.00 3.36
139 140 4.003648 CACAGGCTGTTAACTAGGAAAGG 58.996 47.826 19.43 0.00 0.00 3.11
140 141 4.642429 ACACAGGCTGTTAACTAGGAAAG 58.358 43.478 19.43 4.47 0.00 2.62
141 142 4.699925 ACACAGGCTGTTAACTAGGAAA 57.300 40.909 19.43 0.00 0.00 3.13
142 143 5.811796 TTACACAGGCTGTTAACTAGGAA 57.188 39.130 19.43 5.63 33.91 3.36
143 144 6.368779 AATTACACAGGCTGTTAACTAGGA 57.631 37.500 19.43 0.00 33.91 2.94
144 145 7.101054 TGTAATTACACAGGCTGTTAACTAGG 58.899 38.462 19.43 7.40 33.91 3.02
145 146 8.604035 CATGTAATTACACAGGCTGTTAACTAG 58.396 37.037 19.43 8.20 39.30 2.57
146 147 8.487313 CATGTAATTACACAGGCTGTTAACTA 57.513 34.615 19.43 11.15 39.30 2.24
147 148 7.377766 CATGTAATTACACAGGCTGTTAACT 57.622 36.000 19.43 12.08 39.30 2.24
156 157 7.169982 GCTCTTAGTAGCATGTAATTACACAGG 59.830 40.741 20.26 13.52 42.30 4.00
157 158 7.169982 GGCTCTTAGTAGCATGTAATTACACAG 59.830 40.741 20.26 16.10 44.64 3.66
158 159 6.984474 GGCTCTTAGTAGCATGTAATTACACA 59.016 38.462 20.26 1.58 44.64 3.72
159 160 7.210873 AGGCTCTTAGTAGCATGTAATTACAC 58.789 38.462 20.26 9.08 44.64 2.90
160 161 7.361457 AGGCTCTTAGTAGCATGTAATTACA 57.639 36.000 20.14 20.14 44.64 2.41
161 162 9.930693 AATAGGCTCTTAGTAGCATGTAATTAC 57.069 33.333 8.75 8.75 44.64 1.89
163 164 9.277783 CAAATAGGCTCTTAGTAGCATGTAATT 57.722 33.333 0.00 0.00 44.64 1.40
164 165 7.880195 CCAAATAGGCTCTTAGTAGCATGTAAT 59.120 37.037 0.00 0.00 44.64 1.89
165 166 7.217200 CCAAATAGGCTCTTAGTAGCATGTAA 58.783 38.462 0.00 0.00 44.64 2.41
166 167 6.239600 CCCAAATAGGCTCTTAGTAGCATGTA 60.240 42.308 0.00 0.00 44.64 2.29
167 168 5.455326 CCCAAATAGGCTCTTAGTAGCATGT 60.455 44.000 0.00 0.00 44.64 3.21
168 169 4.999950 CCCAAATAGGCTCTTAGTAGCATG 59.000 45.833 0.00 0.00 44.64 4.06
169 170 4.907875 TCCCAAATAGGCTCTTAGTAGCAT 59.092 41.667 0.00 0.00 44.64 3.79
170 171 4.101119 GTCCCAAATAGGCTCTTAGTAGCA 59.899 45.833 0.00 0.00 44.64 3.49
171 172 4.345547 AGTCCCAAATAGGCTCTTAGTAGC 59.654 45.833 0.00 0.00 41.99 3.58
172 173 5.740513 GCAGTCCCAAATAGGCTCTTAGTAG 60.741 48.000 0.00 0.00 35.39 2.57
173 174 4.101119 GCAGTCCCAAATAGGCTCTTAGTA 59.899 45.833 0.00 0.00 35.39 1.82
174 175 3.118223 GCAGTCCCAAATAGGCTCTTAGT 60.118 47.826 0.00 0.00 35.39 2.24
175 176 3.135530 AGCAGTCCCAAATAGGCTCTTAG 59.864 47.826 0.00 0.00 35.39 2.18
182 183 1.211457 AGCAGAGCAGTCCCAAATAGG 59.789 52.381 0.00 0.00 37.03 2.57
217 218 0.040425 CTTGTGTTTTTCGGAGCGGG 60.040 55.000 0.00 0.00 0.00 6.13
218 219 0.660300 GCTTGTGTTTTTCGGAGCGG 60.660 55.000 0.00 0.00 0.00 5.52
225 226 2.857748 CCTCGTTTGGCTTGTGTTTTTC 59.142 45.455 0.00 0.00 0.00 2.29
226 227 2.232696 ACCTCGTTTGGCTTGTGTTTTT 59.767 40.909 0.00 0.00 0.00 1.94
243 244 1.067495 GGCATATCGTGGAGCTACCTC 60.067 57.143 0.00 0.00 39.86 3.85
244 245 0.969894 GGCATATCGTGGAGCTACCT 59.030 55.000 0.00 0.00 39.86 3.08
320 322 4.617200 TTTTTGGAGCACCCCCTG 57.383 55.556 0.00 0.00 34.81 4.45
350 352 5.491078 TGATGGGTAATTTCCACCTAACTCT 59.509 40.000 3.30 0.00 37.08 3.24
356 358 3.877735 GCAGTGATGGGTAATTTCCACCT 60.878 47.826 3.30 0.00 37.08 4.00
401 403 0.109723 TGGTTGAGGGGGAAGAAACG 59.890 55.000 0.00 0.00 0.00 3.60
402 404 2.375014 TTGGTTGAGGGGGAAGAAAC 57.625 50.000 0.00 0.00 0.00 2.78
433 435 7.790027 TCAAGAATGAGAAATTTGGTGGAAAA 58.210 30.769 0.00 0.00 0.00 2.29
493 495 8.923683 GTTTCATCTAGAAGTTACAGTACAACC 58.076 37.037 0.00 0.00 37.57 3.77
496 498 7.813148 GCAGTTTCATCTAGAAGTTACAGTACA 59.187 37.037 0.00 0.00 37.57 2.90
502 504 9.640963 TTTAGAGCAGTTTCATCTAGAAGTTAC 57.359 33.333 0.00 0.00 37.57 2.50
503 505 9.862371 CTTTAGAGCAGTTTCATCTAGAAGTTA 57.138 33.333 0.00 0.00 37.57 2.24
527 529 5.560183 CGGTTTCGCTTCACTAAATTCACTT 60.560 40.000 0.00 0.00 0.00 3.16
541 543 3.701532 TCACAAAAATCGGTTTCGCTT 57.298 38.095 0.00 0.00 36.13 4.68
544 546 2.400408 CGCTTCACAAAAATCGGTTTCG 59.600 45.455 0.00 0.00 37.82 3.46
551 553 2.589014 CTGCTCCGCTTCACAAAAATC 58.411 47.619 0.00 0.00 0.00 2.17
572 574 3.685139 TGACTTAGAGCCTGTTTGAGG 57.315 47.619 0.00 0.00 46.13 3.86
574 576 6.149474 GCTTTATTGACTTAGAGCCTGTTTGA 59.851 38.462 0.00 0.00 0.00 2.69
584 586 8.090788 ACTTATGGGAGCTTTATTGACTTAGA 57.909 34.615 0.00 0.00 0.00 2.10
591 593 6.127647 TGCAGAAACTTATGGGAGCTTTATTG 60.128 38.462 0.00 0.00 0.00 1.90
593 595 5.509498 TGCAGAAACTTATGGGAGCTTTAT 58.491 37.500 0.00 0.00 0.00 1.40
595 597 3.766545 TGCAGAAACTTATGGGAGCTTT 58.233 40.909 0.00 0.00 0.00 3.51
596 598 3.439857 TGCAGAAACTTATGGGAGCTT 57.560 42.857 0.00 0.00 0.00 3.74
597 599 3.439857 TTGCAGAAACTTATGGGAGCT 57.560 42.857 0.00 0.00 0.00 4.09
598 600 4.519540 TTTTGCAGAAACTTATGGGAGC 57.480 40.909 0.00 0.00 0.00 4.70
621 623 0.966179 GTGGGCCCAAGACGATTTTT 59.034 50.000 30.64 0.00 0.00 1.94
622 624 0.178975 TGTGGGCCCAAGACGATTTT 60.179 50.000 30.64 0.00 0.00 1.82
624 626 0.680921 CATGTGGGCCCAAGACGATT 60.681 55.000 30.64 3.01 0.00 3.34
625 627 1.077501 CATGTGGGCCCAAGACGAT 60.078 57.895 30.64 10.91 0.00 3.73
658 660 0.879090 GGCCAAGTCGGTCGAAAAAT 59.121 50.000 0.00 0.00 36.97 1.82
659 661 1.167781 GGGCCAAGTCGGTCGAAAAA 61.168 55.000 4.39 0.00 42.07 1.94
710 712 3.129638 TGTTTAGGTGTTTTGTCAGGTGC 59.870 43.478 0.00 0.00 0.00 5.01
1170 1172 3.626924 GTCCTGGGCGTCACCACT 61.627 66.667 0.00 0.00 42.05 4.00
1191 1193 0.099082 CGAGTAGCTTGACCGGAGTC 59.901 60.000 9.46 0.00 43.83 3.36
1291 1293 5.598830 CAGCTAACCCTAGGTCAATCTCTTA 59.401 44.000 8.29 0.00 33.12 2.10
1292 1294 4.407296 CAGCTAACCCTAGGTCAATCTCTT 59.593 45.833 8.29 0.00 33.12 2.85
1293 1295 3.964031 CAGCTAACCCTAGGTCAATCTCT 59.036 47.826 8.29 0.00 33.12 3.10
1294 1296 3.961408 TCAGCTAACCCTAGGTCAATCTC 59.039 47.826 8.29 0.00 33.12 2.75
1295 1297 3.995636 TCAGCTAACCCTAGGTCAATCT 58.004 45.455 8.29 0.00 33.12 2.40
1313 1315 6.499172 TCTAACGAATAGCACAGAGAATCAG 58.501 40.000 0.00 0.00 37.82 2.90
1322 1324 7.985184 ACAAATCCTTATCTAACGAATAGCACA 59.015 33.333 0.00 0.00 0.00 4.57
1323 1325 8.366671 ACAAATCCTTATCTAACGAATAGCAC 57.633 34.615 0.00 0.00 0.00 4.40
1324 1326 8.958119 AACAAATCCTTATCTAACGAATAGCA 57.042 30.769 0.00 0.00 0.00 3.49
1332 1334 8.244113 CCTGAACCAAACAAATCCTTATCTAAC 58.756 37.037 0.00 0.00 0.00 2.34
1370 1372 8.177119 TGTGAATCAAAAAGTGCCTAAGTATT 57.823 30.769 0.00 0.00 0.00 1.89
1406 1408 8.537728 TCCTGTATTTTTCCTATTCCTACGTA 57.462 34.615 0.00 0.00 0.00 3.57
1570 1655 8.743714 ACCTCATCTTACAATTCCTTTGATTTC 58.256 33.333 0.00 0.00 38.76 2.17
1574 1659 6.434028 CCAACCTCATCTTACAATTCCTTTGA 59.566 38.462 0.00 0.00 38.76 2.69
1575 1660 6.434028 TCCAACCTCATCTTACAATTCCTTTG 59.566 38.462 0.00 0.00 41.36 2.77
1583 1668 3.907474 TCCACTCCAACCTCATCTTACAA 59.093 43.478 0.00 0.00 0.00 2.41
1589 1674 1.211457 AGCATCCACTCCAACCTCATC 59.789 52.381 0.00 0.00 0.00 2.92
1616 1701 8.623903 GGAATAATGTCTACTGCATTTCATTGA 58.376 33.333 0.00 0.00 37.65 2.57
1618 1703 8.757982 AGGAATAATGTCTACTGCATTTCATT 57.242 30.769 0.00 0.00 37.65 2.57
1667 1752 5.584649 TGTTGGTCGTTTGATTCATAGGATC 59.415 40.000 3.43 3.67 0.00 3.36
1704 1790 9.998752 TGATTTTTGGAGGGTTATAATCCTTTA 57.001 29.630 18.54 8.11 40.40 1.85
1727 1813 6.408434 GGCAACCCAAAGGAATTTCATATGAT 60.408 38.462 6.17 0.00 36.73 2.45
1753 1855 7.624360 TTGTTGATCTAATAGCGTTTGGAAT 57.376 32.000 0.00 0.00 0.00 3.01
1779 1881 4.890581 TGTTCCCATGATTAAAATACCCCG 59.109 41.667 0.00 0.00 0.00 5.73
1782 1884 9.719355 AAAGTTTGTTCCCATGATTAAAATACC 57.281 29.630 0.00 0.00 0.00 2.73
1820 1922 7.304735 TCATTTATTCAAACATGTGGAAGTCG 58.695 34.615 15.74 5.95 0.00 4.18
1845 1947 7.068103 TGAGTAATTGCCGAAATAACATCCAAT 59.932 33.333 0.00 0.00 0.00 3.16
1848 1950 6.038271 AGTGAGTAATTGCCGAAATAACATCC 59.962 38.462 0.00 0.00 0.00 3.51
1851 1953 6.170506 AGAGTGAGTAATTGCCGAAATAACA 58.829 36.000 0.00 0.00 0.00 2.41
1914 2016 5.789643 AGACTGGCACACATGTTTTATTT 57.210 34.783 0.00 0.00 0.00 1.40
1915 2017 5.509501 CCAAGACTGGCACACATGTTTTATT 60.510 40.000 0.00 0.00 35.39 1.40
1916 2018 4.022068 CCAAGACTGGCACACATGTTTTAT 60.022 41.667 0.00 0.00 35.39 1.40
1919 2021 1.682854 CCAAGACTGGCACACATGTTT 59.317 47.619 0.00 0.00 35.39 2.83
1920 2022 1.133823 TCCAAGACTGGCACACATGTT 60.134 47.619 0.00 0.00 43.17 2.71
1921 2023 0.473755 TCCAAGACTGGCACACATGT 59.526 50.000 0.00 0.00 43.17 3.21
1926 2037 0.251297 CCCATTCCAAGACTGGCACA 60.251 55.000 0.00 0.00 43.17 4.57
2008 2119 1.131638 GACTATCCCACTGCCATGGA 58.868 55.000 18.40 0.00 43.02 3.41
2054 2175 9.341899 CAGAACATACAACATAAAAGGCTAAAC 57.658 33.333 0.00 0.00 0.00 2.01
2068 2189 8.709386 ATAGACAGAATCACAGAACATACAAC 57.291 34.615 0.00 0.00 0.00 3.32
2173 2294 6.833416 CCAAGGATTCATAGATTGGTTTACCA 59.167 38.462 0.00 0.00 45.94 3.25
2181 2302 5.840243 TGTTGCCAAGGATTCATAGATTG 57.160 39.130 0.00 0.00 0.00 2.67
2260 2620 5.599999 TTCCAGTGCCTATCTAGTTCTTC 57.400 43.478 0.00 0.00 0.00 2.87
2266 2626 4.142609 TGCTTTTCCAGTGCCTATCTAG 57.857 45.455 0.00 0.00 0.00 2.43
2440 2800 3.294627 GTCGCGAATAAAAGCAGAAAACG 59.705 43.478 12.06 0.00 0.00 3.60
2458 2818 4.291540 TGCATATTTTTCATGAGGTCGC 57.708 40.909 0.00 0.00 0.00 5.19
2480 2840 1.570803 TAACTAGCCAGGCCGGTTAA 58.429 50.000 18.93 7.73 36.97 2.01
2486 2846 2.434702 ACACACTATAACTAGCCAGGCC 59.565 50.000 8.22 0.00 0.00 5.19
2492 2852 3.536956 TGGGCACACACTATAACTAGC 57.463 47.619 0.00 0.00 0.00 3.42
2536 2896 3.120199 CGAGTTTTTATCAGTGTGGCCAG 60.120 47.826 5.11 0.00 0.00 4.85
2628 3063 2.043953 GGATGGGGTCCACCAAGC 60.044 66.667 0.00 0.00 46.96 4.01
2679 3129 2.101415 CTGATCTATCAAGGGTGACGCA 59.899 50.000 1.61 0.00 36.31 5.24
2685 3135 3.041946 GACCACCTGATCTATCAAGGGT 58.958 50.000 8.69 8.69 36.22 4.34
2689 3139 5.282055 GTCATGACCACCTGATCTATCAA 57.718 43.478 15.31 0.00 36.18 2.57
2737 3187 7.792032 AGATCTGGTCGGTTTGAATAGAATAA 58.208 34.615 0.00 0.00 0.00 1.40
2739 3189 6.127054 TGAGATCTGGTCGGTTTGAATAGAAT 60.127 38.462 0.00 0.00 0.00 2.40
2930 3453 2.946564 TGTGTACGATCACAGCAGAAG 58.053 47.619 11.77 0.00 42.36 2.85
2944 3467 6.091123 GTATCCACGACTTTGATTGTGTAC 57.909 41.667 0.00 0.00 32.76 2.90
2998 3521 1.439353 ATGATGCATTCGTGCCCGAC 61.439 55.000 0.00 0.00 44.13 4.79
3038 3561 5.744171 ACAAGCCAAAGTCCTTTCAAAAAT 58.256 33.333 0.00 0.00 0.00 1.82
3048 3571 3.935828 GAGATGTCTACAAGCCAAAGTCC 59.064 47.826 0.00 0.00 0.00 3.85
3049 3572 4.629200 CAGAGATGTCTACAAGCCAAAGTC 59.371 45.833 0.00 0.00 0.00 3.01
3084 3607 5.007234 CACCACAAGTTGATGTAGAAAACGA 59.993 40.000 10.54 0.00 30.84 3.85
3086 3609 4.976116 GCACCACAAGTTGATGTAGAAAAC 59.024 41.667 10.54 0.00 30.84 2.43
3087 3610 4.642437 TGCACCACAAGTTGATGTAGAAAA 59.358 37.500 10.54 0.00 30.84 2.29
3104 3627 0.251297 AGCCTGCTATTTGTGCACCA 60.251 50.000 15.69 0.00 36.37 4.17
3133 3656 3.564511 CCAACCACAATCGTTGTTGATC 58.435 45.455 10.20 0.00 46.59 2.92
3292 3818 7.775561 AGAAATACTTTCATACTTGGGATCCAC 59.224 37.037 15.23 3.53 42.10 4.02
3370 3896 8.755696 TTGCCTGTTATCATTGTGAATTAAAC 57.244 30.769 0.00 0.00 0.00 2.01
3420 3946 6.884280 AGCCAAATCATTAGCAGGTAATAC 57.116 37.500 4.52 0.00 29.54 1.89
3496 4022 3.553922 CCAGTCACTGACAAAGAGAGGAC 60.554 52.174 6.30 0.00 34.60 3.85
3557 4083 3.759581 ACAAGCATCAAACTCTCCACAT 58.240 40.909 0.00 0.00 0.00 3.21
3598 4124 6.326583 TCTTCTCTTTACAGGAGTTCCTTGAA 59.673 38.462 0.00 0.00 46.09 2.69
3736 4262 0.607489 CCCTGTGTCAGCAAAGAGGG 60.607 60.000 0.00 0.00 31.54 4.30
3773 4299 8.792830 TGTTTCTTGAGTAATATTCTGAAGGG 57.207 34.615 11.29 0.00 29.65 3.95
3916 4442 5.946972 TCACACTCTTTTGTTTTACCAAGGA 59.053 36.000 0.00 0.00 0.00 3.36
4041 4567 3.589988 CTTCTTGCGTATGTCCTGAACT 58.410 45.455 0.00 0.00 0.00 3.01
4042 4568 2.673368 CCTTCTTGCGTATGTCCTGAAC 59.327 50.000 0.00 0.00 0.00 3.18
4079 4605 3.073798 TCAGGGCTGTATTTTTCTCACCA 59.926 43.478 0.00 0.00 0.00 4.17
4117 4643 3.638160 AGATGCTTCAAAAACAGCTTCCA 59.362 39.130 2.07 0.00 39.77 3.53
4125 4651 6.645700 TTTGACAACAGATGCTTCAAAAAC 57.354 33.333 2.07 0.00 33.52 2.43
4256 4782 3.976654 AGATAGCAGGCAAAGGATCCTTA 59.023 43.478 27.29 9.58 34.84 2.69
4286 4812 3.305335 GGTATGTGGCACCACTTCTTTTG 60.305 47.826 20.02 0.00 46.30 2.44
4359 4885 8.391106 ACGATGAGCTTCTGTTAATATTGTTTC 58.609 33.333 0.00 0.00 0.00 2.78
4396 4922 5.836358 AGAGTATCCTCCTGCTTTAGGTAAG 59.164 44.000 0.00 0.00 41.66 2.34
4448 5039 4.025061 GGATCAGATTCATGCTTCTCAACG 60.025 45.833 0.00 0.00 0.00 4.10
4460 5051 9.117183 CATAAACTCATTGAAGGATCAGATTCA 57.883 33.333 0.00 0.00 36.78 2.57
4470 5061 9.388506 AGTATCTGAACATAAACTCATTGAAGG 57.611 33.333 0.00 0.00 0.00 3.46
4511 5102 4.035558 CACTTACTTTGCAGAAGTTCAGCA 59.964 41.667 17.98 17.98 37.11 4.41
4600 5192 6.480763 TCAATATTTGACAACCTAAGCAGGA 58.519 36.000 0.00 0.00 38.35 3.86
4639 5231 9.003658 CAATAATTGATCCTACAACATCCCTAC 57.996 37.037 0.00 0.00 32.50 3.18
4694 5286 1.136828 AACAGTTCAGCCCCACACTA 58.863 50.000 0.00 0.00 0.00 2.74
4774 5366 5.051891 CTTCCATAAAAGAAGTGCACCAG 57.948 43.478 14.63 0.00 36.74 4.00
4812 5404 7.959689 ATACTTAGCATATCTCAAAGCACAG 57.040 36.000 0.00 0.00 0.00 3.66
4842 5434 8.977505 GTTATTGTAGCAAAACACAAACATGAT 58.022 29.630 0.00 0.00 38.11 2.45
5008 5600 4.788679 AGGATCACATGCATCTGATTCAA 58.211 39.130 21.29 0.00 0.00 2.69
5117 5709 5.075493 TCCTCTCCTAGTAAGACGTTTTGT 58.925 41.667 0.83 0.00 0.00 2.83
5123 5715 3.822940 ACCATCCTCTCCTAGTAAGACG 58.177 50.000 0.00 0.00 0.00 4.18
5207 5799 1.683319 GCCTTCCCCATTGGTCTCTTC 60.683 57.143 1.20 0.00 34.77 2.87
5336 6385 3.093814 AGGAAAACTTTGACCAAACGGT 58.906 40.909 0.00 0.00 40.46 4.83
5383 6432 4.978083 ACCAAATCTGCTTCATCATGAC 57.022 40.909 0.00 0.00 0.00 3.06
5511 6560 5.240403 AGGTCTTGCAAGAAATTTCAGAGTC 59.760 40.000 29.99 12.95 36.68 3.36
5594 6643 9.246670 TGATTTTGTTGATACAATGAAGATCCT 57.753 29.630 0.00 0.00 43.43 3.24
5841 6890 3.216944 CTGTTGGCCAAGCAGGTGC 62.217 63.158 27.19 14.17 40.61 5.01
5872 6921 0.537188 ACGTGGGACTCTTGGCATAG 59.463 55.000 0.00 0.00 0.00 2.23
5898 6947 3.430790 CCATCTAAGGTTGCTCGTGATGA 60.431 47.826 0.00 0.00 33.74 2.92
5975 7024 3.401243 CTGCGAAAATGGCCTCCGC 62.401 63.158 3.32 12.18 45.28 5.54
6082 7131 1.079543 CCACCTTCTCTGTGAGGCG 60.080 63.158 0.00 0.00 35.74 5.52
6084 7133 1.274728 CTGACCACCTTCTCTGTGAGG 59.725 57.143 0.00 0.00 35.74 3.86
6101 7150 0.680921 GCCTATGTGCCTTTGCCTGA 60.681 55.000 0.00 0.00 36.33 3.86
6157 7206 0.537143 TGTGACCAGCGGAATTGCTT 60.537 50.000 1.50 0.00 44.46 3.91
6200 7249 5.454755 GCCAACTGCTTCCATTATCCTACTA 60.455 44.000 0.00 0.00 36.87 1.82
6269 7318 3.463585 GGTGGATCCCGTACCGCA 61.464 66.667 9.90 0.00 38.28 5.69
6425 7474 1.301716 CTTCACACCAGTCACCGGG 60.302 63.158 6.32 0.00 0.00 5.73
6432 7481 2.093128 AGTTTTCCGTCTTCACACCAGT 60.093 45.455 0.00 0.00 0.00 4.00
6445 7494 5.157781 TCTGAACACAAAAACAGTTTTCCG 58.842 37.500 11.77 8.79 34.64 4.30
6446 7495 6.455513 GCATCTGAACACAAAAACAGTTTTCC 60.456 38.462 11.77 0.00 34.64 3.13
6485 7534 1.978454 CTCCTTCCATCAGATTGCCC 58.022 55.000 0.00 0.00 0.00 5.36
6560 7610 4.752101 CACCTTCACAGTACAAAAGAGAGG 59.248 45.833 0.00 0.00 0.00 3.69
6624 7674 8.432110 TGGCTATGTATGTAATGTAACAACAG 57.568 34.615 0.00 0.00 32.02 3.16
6767 7819 3.779759 TGTGTTCACAACATTTGAAGCC 58.220 40.909 2.99 0.00 44.35 4.35
6803 7875 1.207329 ACTGAGGTCGATAAGGTTGCC 59.793 52.381 0.00 0.00 0.00 4.52
6804 7876 2.674796 ACTGAGGTCGATAAGGTTGC 57.325 50.000 0.00 0.00 0.00 4.17
6805 7877 5.163550 TGACATACTGAGGTCGATAAGGTTG 60.164 44.000 0.00 0.00 39.28 3.77
6806 7878 4.954202 TGACATACTGAGGTCGATAAGGTT 59.046 41.667 0.00 0.00 39.28 3.50
6807 7879 4.533815 TGACATACTGAGGTCGATAAGGT 58.466 43.478 0.00 0.00 39.28 3.50
6809 7881 7.877003 ACTATTGACATACTGAGGTCGATAAG 58.123 38.462 0.00 0.00 40.52 1.73
6810 7882 7.818997 ACTATTGACATACTGAGGTCGATAA 57.181 36.000 0.00 0.00 40.52 1.75
6813 7885 6.827251 AGTAACTATTGACATACTGAGGTCGA 59.173 38.462 0.00 0.00 39.28 4.20
6814 7886 7.028926 AGTAACTATTGACATACTGAGGTCG 57.971 40.000 0.00 0.00 39.28 4.79
6830 7902 9.973450 CACTGCAGATTCTGTAATAGTAACTAT 57.027 33.333 23.35 0.00 33.43 2.12
6831 7903 7.921214 GCACTGCAGATTCTGTAATAGTAACTA 59.079 37.037 23.35 0.00 33.43 2.24
6832 7904 6.758886 GCACTGCAGATTCTGTAATAGTAACT 59.241 38.462 23.35 0.00 33.43 2.24
6890 7962 9.459276 CTTCAAACAAGAAAAATACAACAAACG 57.541 29.630 0.00 0.00 0.00 3.60
6916 7988 6.656693 AGACAGATATAAAATACCATGGCAGC 59.343 38.462 13.04 0.00 0.00 5.25
6932 8004 1.414158 CACGGGGGACAGACAGATAT 58.586 55.000 0.00 0.00 0.00 1.63
6933 8005 1.327690 GCACGGGGGACAGACAGATA 61.328 60.000 0.00 0.00 0.00 1.98
6952 8024 4.500265 CCACTTGGTCCCACCTTG 57.500 61.111 0.00 0.00 39.58 3.61
6992 8065 7.446106 AGATGTAGGGAATGTAATAACCACA 57.554 36.000 0.00 0.00 0.00 4.17
7011 8084 9.780186 GCCTAGGTATATTTTACAGAAAGATGT 57.220 33.333 11.31 0.00 37.19 3.06
7053 8830 9.944376 ACAAACACAGACTAGTGATATTTACAT 57.056 29.630 0.00 0.00 42.05 2.29
7060 8837 7.575155 GCTCTACACAAACACAGACTAGTGATA 60.575 40.741 0.00 0.00 42.05 2.15
7061 8838 6.650427 TCTACACAAACACAGACTAGTGAT 57.350 37.500 0.00 0.00 42.05 3.06
7062 8839 5.507482 GCTCTACACAAACACAGACTAGTGA 60.507 44.000 0.00 0.00 42.05 3.41
7081 8859 3.519510 ACTTCCAGGTATTTGCTGCTCTA 59.480 43.478 0.00 0.00 0.00 2.43
7093 8871 2.642254 CGTCCGCCACTTCCAGGTA 61.642 63.158 0.00 0.00 0.00 3.08
7096 8874 2.738521 CACGTCCGCCACTTCCAG 60.739 66.667 0.00 0.00 0.00 3.86
7107 8885 1.337260 ACAGCAAGATCAGACACGTCC 60.337 52.381 0.00 0.00 0.00 4.79
7111 8889 6.060028 TGTTTTAACAGCAAGATCAGACAC 57.940 37.500 0.00 0.00 34.30 3.67
7116 8894 6.183360 CGCTCTATGTTTTAACAGCAAGATCA 60.183 38.462 0.00 0.00 43.04 2.92
7124 8902 7.518161 TCAAATGTCGCTCTATGTTTTAACAG 58.482 34.615 1.50 0.00 43.04 3.16
7125 8903 7.428282 TCAAATGTCGCTCTATGTTTTAACA 57.572 32.000 0.00 0.00 44.06 2.41
7129 8907 8.816640 AAATTTCAAATGTCGCTCTATGTTTT 57.183 26.923 0.00 0.00 0.00 2.43
7130 8908 8.702438 CAAAATTTCAAATGTCGCTCTATGTTT 58.298 29.630 0.00 0.00 0.00 2.83
7131 8909 7.867403 ACAAAATTTCAAATGTCGCTCTATGTT 59.133 29.630 0.00 0.00 0.00 2.71
7133 8911 7.326789 ACACAAAATTTCAAATGTCGCTCTATG 59.673 33.333 0.00 0.00 0.00 2.23
7135 8913 6.734137 ACACAAAATTTCAAATGTCGCTCTA 58.266 32.000 0.00 0.00 0.00 2.43
7136 8914 5.591099 ACACAAAATTTCAAATGTCGCTCT 58.409 33.333 0.00 0.00 0.00 4.09
7137 8915 5.888412 ACACAAAATTTCAAATGTCGCTC 57.112 34.783 0.00 0.00 0.00 5.03
7138 8916 6.091986 ACAAACACAAAATTTCAAATGTCGCT 59.908 30.769 0.00 0.00 0.00 4.93
7139 8917 6.247176 ACAAACACAAAATTTCAAATGTCGC 58.753 32.000 0.00 0.00 0.00 5.19
7140 8918 7.252930 GCAACAAACACAAAATTTCAAATGTCG 60.253 33.333 0.00 0.00 0.00 4.35
7149 8930 4.379290 GCCACAGCAACAAACACAAAATTT 60.379 37.500 0.00 0.00 39.53 1.82
7161 8942 3.147553 TGGTAATTAGCCACAGCAACA 57.852 42.857 11.96 0.00 43.56 3.33
7168 8949 4.513442 TCAGTCACATGGTAATTAGCCAC 58.487 43.478 11.96 1.95 39.03 5.01
7169 8950 4.225042 ACTCAGTCACATGGTAATTAGCCA 59.775 41.667 11.96 10.07 40.68 4.75
7181 8962 9.574516 AAAGGAAAGTATTTTACTCAGTCACAT 57.425 29.630 0.00 0.00 39.27 3.21
7182 8963 8.974060 AAAGGAAAGTATTTTACTCAGTCACA 57.026 30.769 0.00 0.00 39.27 3.58
7183 8964 8.504815 GGAAAGGAAAGTATTTTACTCAGTCAC 58.495 37.037 0.00 0.00 39.27 3.67
7185 8966 8.850007 AGGAAAGGAAAGTATTTTACTCAGTC 57.150 34.615 0.00 0.00 39.27 3.51
7188 8969 9.503399 GAAGAGGAAAGGAAAGTATTTTACTCA 57.497 33.333 10.15 0.00 41.91 3.41
7189 8970 9.503399 TGAAGAGGAAAGGAAAGTATTTTACTC 57.497 33.333 0.00 1.16 39.27 2.59
7190 8971 9.862149 TTGAAGAGGAAAGGAAAGTATTTTACT 57.138 29.630 0.00 0.00 39.27 2.24
7218 9010 1.455773 GTTATCAAGGGGGCTGGGC 60.456 63.158 0.00 0.00 0.00 5.36
7223 9015 1.844497 ACACTAGGTTATCAAGGGGGC 59.156 52.381 0.00 0.00 0.00 5.80
7241 9033 2.888414 GGGATTCGACAAGGGAAAAACA 59.112 45.455 0.00 0.00 0.00 2.83
7242 9034 2.230508 GGGGATTCGACAAGGGAAAAAC 59.769 50.000 0.00 0.00 0.00 2.43
7252 9044 7.402071 AGGCTTATATATAAAGGGGATTCGACA 59.598 37.037 6.63 0.00 0.00 4.35
7254 9046 7.622081 TCAGGCTTATATATAAAGGGGATTCGA 59.378 37.037 6.63 0.00 0.00 3.71
7255 9047 7.792032 TCAGGCTTATATATAAAGGGGATTCG 58.208 38.462 6.63 0.00 0.00 3.34
7256 9048 9.975218 TTTCAGGCTTATATATAAAGGGGATTC 57.025 33.333 6.63 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.