Multiple sequence alignment - TraesCS2A01G442700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G442700 chr2A 100.000 4304 0 0 1 4304 692753537 692757840 0.000000e+00 7949.0
1 TraesCS2A01G442700 chr2A 77.931 145 29 1 1795 1939 692707663 692707804 2.130000e-13 87.9
2 TraesCS2A01G442700 chr2B 96.256 3632 102 18 1 3601 657789632 657793260 0.000000e+00 5923.0
3 TraesCS2A01G442700 chr2B 91.618 346 20 3 3647 3989 657793256 657793595 1.810000e-128 470.0
4 TraesCS2A01G442700 chr2B 90.879 307 15 5 3998 4304 657793739 657794032 2.410000e-107 399.0
5 TraesCS2A01G442700 chr2D 96.140 3627 103 24 1 3602 552139879 552143493 0.000000e+00 5888.0
6 TraesCS2A01G442700 chr2D 81.232 714 125 7 2636 3346 551932707 551933414 6.250000e-158 568.0
7 TraesCS2A01G442700 chr2D 94.788 307 14 2 3998 4304 552143948 552144252 1.080000e-130 477.0
8 TraesCS2A01G442700 chr2D 90.323 310 22 1 3688 3989 552143495 552143804 2.410000e-107 399.0
9 TraesCS2A01G442700 chr6A 91.667 96 7 1 3592 3687 604890758 604890664 9.710000e-27 132.0
10 TraesCS2A01G442700 chr6A 92.727 55 4 0 3599 3653 494465094 494465040 3.570000e-11 80.5
11 TraesCS2A01G442700 chr1A 90.805 87 7 1 3601 3687 325784973 325785058 9.780000e-22 115.0
12 TraesCS2A01G442700 chr1A 91.837 49 4 0 3591 3639 584111453 584111501 7.720000e-08 69.4
13 TraesCS2A01G442700 chr1A 95.238 42 2 0 3597 3638 558255382 558255423 2.780000e-07 67.6
14 TraesCS2A01G442700 chr3B 88.172 93 6 4 3599 3689 27165142 27165231 5.890000e-19 106.0
15 TraesCS2A01G442700 chr6D 92.727 55 4 0 3599 3653 349927673 349927727 3.570000e-11 80.5
16 TraesCS2A01G442700 chr7D 92.593 54 4 0 3600 3653 83625663 83625716 1.280000e-10 78.7
17 TraesCS2A01G442700 chr6B 86.364 66 9 0 3588 3653 548118894 548118959 5.970000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G442700 chr2A 692753537 692757840 4303 False 7949.000000 7949 100.000000 1 4304 1 chr2A.!!$F2 4303
1 TraesCS2A01G442700 chr2B 657789632 657794032 4400 False 2264.000000 5923 92.917667 1 4304 3 chr2B.!!$F1 4303
2 TraesCS2A01G442700 chr2D 552139879 552144252 4373 False 2254.666667 5888 93.750333 1 4304 3 chr2D.!!$F2 4303
3 TraesCS2A01G442700 chr2D 551932707 551933414 707 False 568.000000 568 81.232000 2636 3346 1 chr2D.!!$F1 710

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
948 953 2.743664 TCTGTGCTCATCCGTTTTCATG 59.256 45.455 0.0 0.0 0.00 3.07 F
1776 1781 0.035915 GCAGAAGAGGGAAGGGTGAC 60.036 60.000 0.0 0.0 0.00 3.67 F
2157 2169 2.930040 CACCAAAGTACTATGCAGTCCG 59.070 50.000 0.0 0.0 36.14 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2825 2864 1.136147 GCTTTCACCATCAGCAGCG 59.864 57.895 0.0 0.0 33.45 5.18 R
2992 3031 1.831652 AAGCAGGGAGGAGTTGGTCG 61.832 60.000 0.0 0.0 0.00 4.79 R
3989 4043 0.033228 AGATCTGCTGCACGGATAGC 59.967 55.000 0.0 0.0 44.82 2.97 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 2.854185 GGCGCATTCTGTTATTTTCTGC 59.146 45.455 10.83 0.00 0.00 4.26
195 196 7.550551 GCTATAATATTCTTGGCATAGCACAGA 59.449 37.037 15.89 0.00 40.22 3.41
321 322 3.150848 TGCTACTGTTCGCTAGATGTG 57.849 47.619 0.00 0.00 0.00 3.21
324 325 3.978217 GCTACTGTTCGCTAGATGTGATC 59.022 47.826 0.00 0.00 34.87 2.92
531 534 7.432059 TGAAGCACATTGTATCAAACATCAAA 58.568 30.769 0.00 0.00 38.10 2.69
860 864 7.234355 TCAGTCCATATCTAAGATGCTACTGA 58.766 38.462 13.58 13.58 40.15 3.41
920 924 4.618489 GTCAAAATCCTGTTCTTCAATGCG 59.382 41.667 0.00 0.00 0.00 4.73
948 953 2.743664 TCTGTGCTCATCCGTTTTCATG 59.256 45.455 0.00 0.00 0.00 3.07
957 962 4.336713 TCATCCGTTTTCATGTTGTGTTGA 59.663 37.500 0.00 0.00 0.00 3.18
1206 1211 1.615392 GCAAGAGCAATCAACCACCTT 59.385 47.619 0.00 0.00 41.58 3.50
1450 1455 1.003233 GTGGCTCCAGTGTTCCCTC 60.003 63.158 0.00 0.00 0.00 4.30
1464 1469 1.067295 TCCCTCCAACAGCATCAGTT 58.933 50.000 0.00 0.00 0.00 3.16
1679 1684 3.204526 CCAGTGAGGATGAAAGAGATGC 58.795 50.000 0.00 0.00 41.22 3.91
1683 1688 3.814283 GTGAGGATGAAAGAGATGCCATC 59.186 47.826 0.00 0.00 35.81 3.51
1776 1781 0.035915 GCAGAAGAGGGAAGGGTGAC 60.036 60.000 0.00 0.00 0.00 3.67
1812 1817 3.211045 AGGAAAAGCTAACTTTGCGACA 58.789 40.909 0.00 0.00 45.48 4.35
1910 1915 4.289342 TGTCTTGTTCATCATTTTGCACG 58.711 39.130 0.00 0.00 0.00 5.34
1923 1928 6.148948 TCATTTTGCACGTTTAGGAGATTTG 58.851 36.000 0.00 0.00 0.00 2.32
1932 1937 8.012241 GCACGTTTAGGAGATTTGATGATTATC 58.988 37.037 0.00 0.00 0.00 1.75
1986 1991 6.575162 AATCACTAGGGTTTGTTCAATGAC 57.425 37.500 0.00 0.00 0.00 3.06
2157 2169 2.930040 CACCAAAGTACTATGCAGTCCG 59.070 50.000 0.00 0.00 36.14 4.79
2165 2177 4.647853 AGTACTATGCAGTCCGATAAACCA 59.352 41.667 0.00 0.00 36.14 3.67
2311 2324 6.708054 GCTCTGTTGCTACATTATATTCAGGT 59.292 38.462 0.34 0.00 32.86 4.00
2330 2343 8.956446 TTCAGGTTGATACTGATATCCTATGA 57.044 34.615 0.00 0.00 43.82 2.15
2348 2361 8.158169 TCCTATGAAACATGATTGCTATGAAC 57.842 34.615 0.00 0.00 0.00 3.18
2384 2400 3.206964 GCTCTTTGCAGATACTTACCCC 58.793 50.000 0.00 0.00 42.31 4.95
2385 2401 3.370527 GCTCTTTGCAGATACTTACCCCA 60.371 47.826 0.00 0.00 42.31 4.96
2406 2440 5.586243 CCCATTATCTTGATCGAGTGTGTTT 59.414 40.000 9.87 0.00 0.00 2.83
2600 2639 7.476667 TGAAAACGTAAACAATGTGACAGAAT 58.523 30.769 0.00 0.00 0.00 2.40
2670 2709 6.935741 TTGATATGGCACTAATGTGTTACC 57.064 37.500 0.00 0.00 45.44 2.85
2825 2864 3.078891 AGAAAGTTGGATGAAGAGGCC 57.921 47.619 0.00 0.00 0.00 5.19
2992 3031 5.238214 ACATCAAGCTCACAGAAAAGAAGAC 59.762 40.000 0.00 0.00 0.00 3.01
3226 3267 2.104792 CAGGTGTCTGAAGGTTCCTCAA 59.895 50.000 0.00 0.00 43.49 3.02
3313 3354 6.483307 TGACATATTCAACTAGGCATTAGCAC 59.517 38.462 0.00 0.00 44.61 4.40
3465 3507 3.898517 AGCTAGCTCGGAAAACAAAAC 57.101 42.857 12.68 0.00 0.00 2.43
3515 3558 8.398878 ACTGTTATCACTTATCTAGCTCTACC 57.601 38.462 0.00 0.00 0.00 3.18
3533 3576 6.257630 GCTCTACCAGAAATGATTTGACTCTC 59.742 42.308 0.00 0.00 0.00 3.20
3602 3645 7.630082 TGGAGTTGGCTTCAAAATATAGTACT 58.370 34.615 0.00 0.00 31.46 2.73
3603 3646 7.769044 TGGAGTTGGCTTCAAAATATAGTACTC 59.231 37.037 0.00 0.00 31.46 2.59
3604 3647 7.226918 GGAGTTGGCTTCAAAATATAGTACTCC 59.773 40.741 0.00 0.00 31.46 3.85
3605 3648 7.054751 AGTTGGCTTCAAAATATAGTACTCCC 58.945 38.462 0.00 0.00 31.46 4.30
3606 3649 6.824958 TGGCTTCAAAATATAGTACTCCCT 57.175 37.500 0.00 0.00 0.00 4.20
3607 3650 6.827727 TGGCTTCAAAATATAGTACTCCCTC 58.172 40.000 0.00 0.00 0.00 4.30
3608 3651 6.183361 TGGCTTCAAAATATAGTACTCCCTCC 60.183 42.308 0.00 0.00 0.00 4.30
3609 3652 5.927115 GCTTCAAAATATAGTACTCCCTCCG 59.073 44.000 0.00 0.00 0.00 4.63
3610 3653 6.239232 GCTTCAAAATATAGTACTCCCTCCGA 60.239 42.308 0.00 0.00 0.00 4.55
3611 3654 7.525692 GCTTCAAAATATAGTACTCCCTCCGAT 60.526 40.741 0.00 0.00 0.00 4.18
3612 3655 7.463961 TCAAAATATAGTACTCCCTCCGATC 57.536 40.000 0.00 0.00 0.00 3.69
3613 3656 6.436532 TCAAAATATAGTACTCCCTCCGATCC 59.563 42.308 0.00 0.00 0.00 3.36
3614 3657 5.531753 AATATAGTACTCCCTCCGATCCA 57.468 43.478 0.00 0.00 0.00 3.41
3615 3658 5.735733 ATATAGTACTCCCTCCGATCCAT 57.264 43.478 0.00 0.00 0.00 3.41
3616 3659 6.843473 ATATAGTACTCCCTCCGATCCATA 57.157 41.667 0.00 0.00 0.00 2.74
3617 3660 5.735733 ATAGTACTCCCTCCGATCCATAT 57.264 43.478 0.00 0.00 0.00 1.78
3618 3661 4.405756 AGTACTCCCTCCGATCCATATT 57.594 45.455 0.00 0.00 0.00 1.28
3619 3662 5.531753 AGTACTCCCTCCGATCCATATTA 57.468 43.478 0.00 0.00 0.00 0.98
3620 3663 5.900437 AGTACTCCCTCCGATCCATATTAA 58.100 41.667 0.00 0.00 0.00 1.40
3621 3664 6.503944 AGTACTCCCTCCGATCCATATTAAT 58.496 40.000 0.00 0.00 0.00 1.40
3622 3665 5.941555 ACTCCCTCCGATCCATATTAATC 57.058 43.478 0.00 0.00 0.00 1.75
3623 3666 4.402793 ACTCCCTCCGATCCATATTAATCG 59.597 45.833 8.78 8.78 43.32 3.34
3624 3667 4.350245 TCCCTCCGATCCATATTAATCGT 58.650 43.478 12.91 0.00 42.41 3.73
3625 3668 4.401519 TCCCTCCGATCCATATTAATCGTC 59.598 45.833 12.91 0.00 42.41 4.20
3626 3669 4.352039 CCTCCGATCCATATTAATCGTCG 58.648 47.826 12.91 0.00 42.41 5.12
3627 3670 3.766151 TCCGATCCATATTAATCGTCGC 58.234 45.455 12.91 0.00 42.41 5.19
3628 3671 3.442625 TCCGATCCATATTAATCGTCGCT 59.557 43.478 12.91 0.00 42.41 4.93
3629 3672 3.547868 CCGATCCATATTAATCGTCGCTG 59.452 47.826 12.91 0.00 42.41 5.18
3630 3673 4.412207 CGATCCATATTAATCGTCGCTGA 58.588 43.478 7.89 0.00 39.83 4.26
3631 3674 5.037385 CGATCCATATTAATCGTCGCTGAT 58.963 41.667 7.89 0.00 39.83 2.90
3632 3675 5.516696 CGATCCATATTAATCGTCGCTGATT 59.483 40.000 7.89 7.07 39.83 2.57
3633 3676 6.035005 CGATCCATATTAATCGTCGCTGATTT 59.965 38.462 7.17 0.00 39.83 2.17
3634 3677 7.220108 CGATCCATATTAATCGTCGCTGATTTA 59.780 37.037 7.17 0.14 39.83 1.40
3635 3678 7.812309 TCCATATTAATCGTCGCTGATTTAG 57.188 36.000 7.17 0.00 39.27 1.85
3636 3679 7.375834 TCCATATTAATCGTCGCTGATTTAGT 58.624 34.615 7.17 0.00 39.27 2.24
3637 3680 8.517056 TCCATATTAATCGTCGCTGATTTAGTA 58.483 33.333 7.17 1.14 39.27 1.82
3638 3681 9.302345 CCATATTAATCGTCGCTGATTTAGTAT 57.698 33.333 7.17 2.90 39.27 2.12
3643 3686 9.687210 TTAATCGTCGCTGATTTAGTATAATGT 57.313 29.630 7.17 0.00 39.27 2.71
3644 3687 8.589335 AATCGTCGCTGATTTAGTATAATGTT 57.411 30.769 0.00 0.00 35.03 2.71
3645 3688 7.389603 TCGTCGCTGATTTAGTATAATGTTG 57.610 36.000 0.00 0.00 0.00 3.33
3646 3689 6.976349 TCGTCGCTGATTTAGTATAATGTTGT 59.024 34.615 0.00 0.00 0.00 3.32
3647 3690 8.130469 TCGTCGCTGATTTAGTATAATGTTGTA 58.870 33.333 0.00 0.00 0.00 2.41
3648 3691 8.205948 CGTCGCTGATTTAGTATAATGTTGTAC 58.794 37.037 0.00 0.00 0.00 2.90
3649 3692 9.245962 GTCGCTGATTTAGTATAATGTTGTACT 57.754 33.333 7.24 7.24 38.43 2.73
3752 3795 6.588204 TCTTTTACAGAAAGTGGCTTAGTGA 58.412 36.000 0.00 0.00 0.00 3.41
3769 3812 3.813529 GTGAGTTGCATTCACTGGTAC 57.186 47.619 19.24 0.00 41.29 3.34
3791 3834 6.602410 ACCAGTATCACATCTCATAGGATG 57.398 41.667 0.00 0.00 45.96 3.51
3818 3864 5.066893 ACATGCATATGAAAACTTCGCAGAT 59.933 36.000 6.97 0.00 37.73 2.90
3841 3887 4.836125 TCCAAAATCTGTGCAGAACTTC 57.164 40.909 5.95 0.00 41.36 3.01
3883 3929 4.332819 GCTAGGTAAATCGAGTTGCATTGT 59.667 41.667 15.30 0.11 0.00 2.71
3899 3945 3.727673 GCATTGTGCGTGATAATTCGTGT 60.728 43.478 0.00 0.00 31.71 4.49
3926 3980 4.729868 AGGAATATGCCACCCAATAGTTC 58.270 43.478 1.47 0.00 0.00 3.01
3946 4000 5.827797 AGTTCTCAAAACCATTGTCTTAGCA 59.172 36.000 0.00 0.00 0.00 3.49
3949 4003 4.854399 TCAAAACCATTGTCTTAGCAACG 58.146 39.130 0.00 0.00 0.00 4.10
3991 4045 3.858247 GGTACGGTCTTACATTCTTGCT 58.142 45.455 0.00 0.00 0.00 3.91
3992 4046 5.002464 GGTACGGTCTTACATTCTTGCTA 57.998 43.478 0.00 0.00 0.00 3.49
3993 4047 5.598769 GGTACGGTCTTACATTCTTGCTAT 58.401 41.667 0.00 0.00 0.00 2.97
3996 4050 3.736252 CGGTCTTACATTCTTGCTATCCG 59.264 47.826 0.00 0.00 0.00 4.18
4025 4215 0.391263 TCTGCTCTGCTCGACTCGTA 60.391 55.000 0.00 0.00 0.00 3.43
4031 4221 1.810755 TCTGCTCGACTCGTACAATGT 59.189 47.619 0.00 0.00 0.00 2.71
4107 4297 0.998226 CCAACACGCGAATTGCAGTG 60.998 55.000 15.93 13.20 46.97 3.66
4118 4308 0.534877 ATTGCAGTGACGCAGGAACA 60.535 50.000 0.00 0.00 44.14 3.18
4200 4390 3.244976 GAACATTTCCAACCTGCAATCG 58.755 45.455 0.00 0.00 0.00 3.34
4243 4433 1.043116 TACCGGTGAGATCTGCAGGG 61.043 60.000 19.93 6.86 0.00 4.45
4271 4461 3.793144 CGTCCGCTGCTTGCTTCC 61.793 66.667 0.00 0.00 40.11 3.46
4272 4462 3.793144 GTCCGCTGCTTGCTTCCG 61.793 66.667 0.00 0.00 40.11 4.30
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
122 123 4.057432 GTTGTCACACAAAAATGATGGGG 58.943 43.478 0.00 0.00 40.15 4.96
195 196 3.619979 CGAAGACCCATGAAGCCTAGTTT 60.620 47.826 0.00 0.00 0.00 2.66
865 869 7.825681 TCAAATGCAAGAGGAAATCGAATAAA 58.174 30.769 0.00 0.00 0.00 1.40
920 924 2.808543 ACGGATGAGCACAGAAAGAAAC 59.191 45.455 0.00 0.00 0.00 2.78
948 953 8.514594 TCAATCCAAATCTAGAATCAACACAAC 58.485 33.333 0.00 0.00 0.00 3.32
957 962 5.595952 GGCACCTTCAATCCAAATCTAGAAT 59.404 40.000 0.00 0.00 0.00 2.40
1206 1211 4.574674 ACCAATTCCTAGTTGATGCTGA 57.425 40.909 0.00 0.00 0.00 4.26
1450 1455 3.125316 CACCAAAAACTGATGCTGTTGG 58.875 45.455 0.00 0.00 41.06 3.77
1464 1469 4.759693 CCACTTAGTGCTGTATCACCAAAA 59.240 41.667 6.88 0.00 37.68 2.44
1514 1519 2.616510 GCTGCCACTCCTGTAAACTCAT 60.617 50.000 0.00 0.00 0.00 2.90
1683 1688 0.889186 CGACACTTCCAACCCCAAGG 60.889 60.000 0.00 0.00 40.04 3.61
1776 1781 4.796290 GCTTTTCCTTTTCCCTTTCCGAAG 60.796 45.833 0.00 0.00 0.00 3.79
1812 1817 2.242196 CTGTTCCCTCCTCTCTCTCTCT 59.758 54.545 0.00 0.00 0.00 3.10
1923 1928 9.585099 GACTATTCTGGACATCTGATAATCATC 57.415 37.037 0.00 0.00 0.00 2.92
1932 1937 9.072375 TCTATAGTTGACTATTCTGGACATCTG 57.928 37.037 8.80 0.00 39.66 2.90
2330 2343 7.121759 AGCAACTAGTTCATAGCAATCATGTTT 59.878 33.333 15.60 0.00 34.56 2.83
2348 2361 2.071688 AGAGCACAACGAGCAACTAG 57.928 50.000 0.00 0.00 0.00 2.57
2380 2396 3.711704 ACACTCGATCAAGATAATGGGGT 59.288 43.478 0.00 0.00 0.00 4.95
2381 2397 4.060900 CACACTCGATCAAGATAATGGGG 58.939 47.826 0.00 0.00 0.00 4.96
2382 2398 4.697514 ACACACTCGATCAAGATAATGGG 58.302 43.478 0.00 0.00 0.00 4.00
2383 2399 6.092670 ACAAACACACTCGATCAAGATAATGG 59.907 38.462 0.00 0.00 0.00 3.16
2384 2400 7.065216 ACAAACACACTCGATCAAGATAATG 57.935 36.000 0.00 0.00 0.00 1.90
2385 2401 7.277981 GGTACAAACACACTCGATCAAGATAAT 59.722 37.037 0.00 0.00 0.00 1.28
2474 2508 9.060347 AGTGCAATGAGGACAATAATACTTATG 57.940 33.333 0.00 0.00 41.69 1.90
2476 2510 9.542462 GTAGTGCAATGAGGACAATAATACTTA 57.458 33.333 0.00 0.00 41.69 2.24
2477 2511 8.267894 AGTAGTGCAATGAGGACAATAATACTT 58.732 33.333 0.00 0.00 41.69 2.24
2630 2669 8.824781 GCCATATCAAACATATATGAGCAGTAG 58.175 37.037 19.63 3.19 38.89 2.57
2670 2709 5.098893 CCTGTCATTCTAGAGAACAGTTCG 58.901 45.833 20.67 9.32 36.80 3.95
2825 2864 1.136147 GCTTTCACCATCAGCAGCG 59.864 57.895 0.00 0.00 33.45 5.18
2861 2900 3.618351 CTGATTGTCTTGCTCATCCCTT 58.382 45.455 0.00 0.00 0.00 3.95
2992 3031 1.831652 AAGCAGGGAGGAGTTGGTCG 61.832 60.000 0.00 0.00 0.00 4.79
3313 3354 9.110502 GGAACTTCTTCAAATAGTTACTATGGG 57.889 37.037 5.58 1.88 32.58 4.00
3391 3433 6.942976 TGTTCTAATAACTTTCCTCACGGAT 58.057 36.000 0.00 0.00 39.58 4.18
3413 3455 2.173569 ACAAAGTTCTCTCCAAGCCTGT 59.826 45.455 0.00 0.00 0.00 4.00
3465 3507 3.194116 ACAGTTAGGCATGCCAGATTTTG 59.806 43.478 37.18 26.18 38.92 2.44
3511 3554 6.036953 GCAGAGAGTCAAATCATTTCTGGTAG 59.963 42.308 0.00 0.00 33.11 3.18
3515 3558 4.942483 AGGCAGAGAGTCAAATCATTTCTG 59.058 41.667 0.00 0.00 35.03 3.02
3533 3576 2.715046 TGGAAGCAAATACTGAGGCAG 58.285 47.619 0.00 0.00 37.52 4.85
3602 3645 4.350245 ACGATTAATATGGATCGGAGGGA 58.650 43.478 19.21 0.00 46.90 4.20
3603 3646 4.683832 GACGATTAATATGGATCGGAGGG 58.316 47.826 19.21 0.10 46.90 4.30
3604 3647 4.352039 CGACGATTAATATGGATCGGAGG 58.648 47.826 19.21 8.69 46.90 4.30
3605 3648 3.791887 GCGACGATTAATATGGATCGGAG 59.208 47.826 19.21 14.63 46.90 4.63
3606 3649 3.442625 AGCGACGATTAATATGGATCGGA 59.557 43.478 19.21 0.00 46.90 4.55
3607 3650 3.547868 CAGCGACGATTAATATGGATCGG 59.452 47.826 19.21 8.45 46.90 4.18
3609 3652 6.893958 AATCAGCGACGATTAATATGGATC 57.106 37.500 0.00 0.00 33.82 3.36
3610 3653 8.035394 ACTAAATCAGCGACGATTAATATGGAT 58.965 33.333 0.00 0.00 34.49 3.41
3611 3654 7.375834 ACTAAATCAGCGACGATTAATATGGA 58.624 34.615 0.00 0.00 34.49 3.41
3612 3655 7.582435 ACTAAATCAGCGACGATTAATATGG 57.418 36.000 0.00 0.00 34.49 2.74
3617 3660 9.687210 ACATTATACTAAATCAGCGACGATTAA 57.313 29.630 0.00 0.00 34.49 1.40
3618 3661 9.687210 AACATTATACTAAATCAGCGACGATTA 57.313 29.630 0.00 0.00 34.49 1.75
3619 3662 8.487970 CAACATTATACTAAATCAGCGACGATT 58.512 33.333 0.00 0.00 37.20 3.34
3620 3663 7.652105 ACAACATTATACTAAATCAGCGACGAT 59.348 33.333 0.00 0.00 0.00 3.73
3621 3664 6.976349 ACAACATTATACTAAATCAGCGACGA 59.024 34.615 0.00 0.00 0.00 4.20
3622 3665 7.161829 ACAACATTATACTAAATCAGCGACG 57.838 36.000 0.00 0.00 0.00 5.12
3623 3666 9.245962 AGTACAACATTATACTAAATCAGCGAC 57.754 33.333 0.00 0.00 29.70 5.19
3657 3700 6.043822 TCCCTCCGATCCATATTTAATTGTCA 59.956 38.462 0.00 0.00 0.00 3.58
3667 3710 4.292571 TCTTCTACTCCCTCCGATCCATAT 59.707 45.833 0.00 0.00 0.00 1.78
3752 3795 2.783135 CTGGTACCAGTGAATGCAACT 58.217 47.619 30.57 0.00 39.10 3.16
3769 3812 5.187381 AGCATCCTATGAGATGTGATACTGG 59.813 44.000 8.17 0.00 44.58 4.00
3791 3834 4.672413 GCGAAGTTTTCATATGCATGTAGC 59.328 41.667 10.16 0.00 45.96 3.58
3818 3864 6.240894 AGAAGTTCTGCACAGATTTTGGATA 58.759 36.000 4.10 0.00 37.29 2.59
3841 3887 1.154205 CGATTCGGCCCAGCTTGTAG 61.154 60.000 0.00 0.00 0.00 2.74
3883 3929 4.099380 TCTACACACGAATTATCACGCA 57.901 40.909 0.00 0.00 0.00 5.24
3899 3945 2.770447 TGGGTGGCATATTCCTCTACA 58.230 47.619 0.00 0.00 0.00 2.74
3926 3980 4.911610 CGTTGCTAAGACAATGGTTTTGAG 59.088 41.667 0.00 0.00 33.72 3.02
3946 4000 5.577164 CGTCATACCTTTTTCTCATCTCGTT 59.423 40.000 0.00 0.00 0.00 3.85
3949 4003 5.420409 ACCGTCATACCTTTTTCTCATCTC 58.580 41.667 0.00 0.00 0.00 2.75
3989 4043 0.033228 AGATCTGCTGCACGGATAGC 59.967 55.000 0.00 0.00 44.82 2.97
3990 4044 1.780806 CAGATCTGCTGCACGGATAG 58.219 55.000 10.38 0.00 44.82 2.08
3991 4045 3.974222 CAGATCTGCTGCACGGATA 57.026 52.632 10.38 0.00 44.82 2.59
4025 4215 0.320421 CGAGGTGTTCGGGACATTGT 60.320 55.000 0.00 0.00 45.54 2.71
4090 4280 0.041312 GTCACTGCAATTCGCGTGTT 60.041 50.000 5.77 0.00 46.97 3.32
4094 4284 2.571611 GCGTCACTGCAATTCGCG 60.572 61.111 0.00 0.00 46.97 5.87
4107 4297 2.355837 TCGTGCTGTTCCTGCGTC 60.356 61.111 0.00 0.00 0.00 5.19
4118 4308 1.520120 CGGCATCACATCTCGTGCT 60.520 57.895 0.00 0.00 45.92 4.40
4213 4403 5.411669 AGATCTCACCGGTAAAATGTTGTTC 59.588 40.000 6.87 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.