Multiple sequence alignment - TraesCS2A01G441700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G441700 chr2A 100.000 2818 0 0 1 2818 691532117 691534934 0.000000e+00 5204.0
1 TraesCS2A01G441700 chr2A 79.056 339 53 10 2015 2349 779644790 779644466 1.700000e-52 217.0
2 TraesCS2A01G441700 chr2A 86.897 145 14 5 2674 2818 41106347 41106208 1.050000e-34 158.0
3 TraesCS2A01G441700 chr2A 83.333 120 17 1 2434 2553 450996487 450996603 1.070000e-19 108.0
4 TraesCS2A01G441700 chr2D 92.195 1576 108 10 766 2335 548633589 548635155 0.000000e+00 2215.0
5 TraesCS2A01G441700 chr2D 90.206 1164 70 7 1001 2153 548449178 548450308 0.000000e+00 1478.0
6 TraesCS2A01G441700 chr2D 90.079 252 21 3 2568 2818 548462765 548463013 9.740000e-85 324.0
7 TraesCS2A01G441700 chr2D 82.230 287 39 7 2085 2368 634125015 634125292 1.300000e-58 237.0
8 TraesCS2A01G441700 chr2D 83.491 212 10 11 766 970 548448987 548449180 1.040000e-39 174.0
9 TraesCS2A01G441700 chr2D 95.192 104 5 0 2158 2261 548462550 548462653 6.250000e-37 165.0
10 TraesCS2A01G441700 chr2D 90.566 106 10 0 2569 2674 548636683 548636788 1.050000e-29 141.0
11 TraesCS2A01G441700 chr2B 93.161 965 63 2 837 1799 655600149 655601112 0.000000e+00 1413.0
12 TraesCS2A01G441700 chr2B 88.348 575 46 6 1794 2368 655617085 655617638 0.000000e+00 671.0
13 TraesCS2A01G441700 chr2B 91.509 106 8 1 2569 2674 655617717 655617821 8.140000e-31 145.0
14 TraesCS2A01G441700 chr2B 79.221 154 20 9 2421 2569 384568975 384568829 2.310000e-16 97.1
15 TraesCS2A01G441700 chr5B 92.784 776 44 7 4 771 596440004 596440775 0.000000e+00 1112.0
16 TraesCS2A01G441700 chr5B 91.489 423 31 3 348 766 489524727 489524306 6.770000e-161 577.0
17 TraesCS2A01G441700 chr1D 91.677 793 41 8 1 773 12203014 12203801 0.000000e+00 1075.0
18 TraesCS2A01G441700 chr6A 89.175 776 67 9 1 761 159188419 159187646 0.000000e+00 952.0
19 TraesCS2A01G441700 chr6A 97.665 514 11 1 253 766 35565466 35564954 0.000000e+00 881.0
20 TraesCS2A01G441700 chr6A 95.161 186 9 0 1 186 35565689 35565504 7.630000e-76 294.0
21 TraesCS2A01G441700 chr6A 84.828 145 20 2 2675 2818 203593917 203593774 8.140000e-31 145.0
22 TraesCS2A01G441700 chr6A 84.138 145 21 2 2675 2818 51902419 51902276 3.790000e-29 139.0
23 TraesCS2A01G441700 chr7A 89.453 749 59 12 1 730 16294240 16293493 0.000000e+00 928.0
24 TraesCS2A01G441700 chr7A 84.828 145 20 2 2675 2818 635058014 635057871 8.140000e-31 145.0
25 TraesCS2A01G441700 chr7A 84.828 145 19 3 2675 2818 652531116 652530974 2.930000e-30 143.0
26 TraesCS2A01G441700 chr4A 87.887 776 47 22 1 768 654843667 654842931 0.000000e+00 869.0
27 TraesCS2A01G441700 chr3A 82.639 1008 149 16 887 1887 16011855 16012843 0.000000e+00 869.0
28 TraesCS2A01G441700 chr3A 78.591 1121 193 29 766 1871 16232109 16231021 0.000000e+00 697.0
29 TraesCS2A01G441700 chr3A 84.828 145 20 2 2675 2818 744450581 744450724 8.140000e-31 145.0
30 TraesCS2A01G441700 chr3A 82.353 153 23 3 2668 2818 217352490 217352340 2.280000e-26 130.0
31 TraesCS2A01G441700 chr3A 82.524 103 13 3 2435 2535 595965855 595965954 5.000000e-13 86.1
32 TraesCS2A01G441700 chr3A 79.200 125 21 3 2409 2532 714642713 714642833 6.470000e-12 82.4
33 TraesCS2A01G441700 chr3D 83.205 911 145 5 987 1893 5407374 5406468 0.000000e+00 828.0
34 TraesCS2A01G441700 chr3D 76.571 175 30 7 2408 2577 254338883 254339051 5.000000e-13 86.1
35 TraesCS2A01G441700 chr3B 81.188 1010 159 21 887 1887 12936048 12937035 0.000000e+00 784.0
36 TraesCS2A01G441700 chr3B 82.438 894 146 7 984 1871 13415672 13416560 0.000000e+00 771.0
37 TraesCS2A01G441700 chr3B 82.019 862 149 3 994 1849 13248796 13249657 0.000000e+00 728.0
38 TraesCS2A01G441700 chr4D 88.993 427 37 4 348 766 384958236 384958660 1.160000e-143 520.0
39 TraesCS2A01G441700 chr4D 86.275 357 31 11 1 340 384957783 384958138 3.430000e-99 372.0
40 TraesCS2A01G441700 chr4D 82.536 418 45 15 351 766 450362080 450361689 2.690000e-90 342.0
41 TraesCS2A01G441700 chr7B 84.848 495 34 15 151 626 721222178 721222650 7.110000e-126 460.0
42 TraesCS2A01G441700 chr7B 84.354 147 19 4 2675 2818 613268658 613268513 1.050000e-29 141.0
43 TraesCS2A01G441700 chr5D 83.750 160 19 5 2413 2570 390127046 390126892 8.140000e-31 145.0
44 TraesCS2A01G441700 chr4B 78.417 139 17 9 2440 2572 6616881 6616750 8.370000e-11 78.7
45 TraesCS2A01G441700 chr4B 80.374 107 11 9 2440 2541 168569964 168569863 3.890000e-09 73.1
46 TraesCS2A01G441700 chr1B 87.500 56 6 1 2509 2564 168916312 168916366 2.340000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G441700 chr2A 691532117 691534934 2817 False 5204.0 5204 100.0000 1 2818 1 chr2A.!!$F2 2817
1 TraesCS2A01G441700 chr2D 548633589 548636788 3199 False 1178.0 2215 91.3805 766 2674 2 chr2D.!!$F4 1908
2 TraesCS2A01G441700 chr2D 548448987 548450308 1321 False 826.0 1478 86.8485 766 2153 2 chr2D.!!$F2 1387
3 TraesCS2A01G441700 chr2B 655600149 655601112 963 False 1413.0 1413 93.1610 837 1799 1 chr2B.!!$F1 962
4 TraesCS2A01G441700 chr2B 655617085 655617821 736 False 408.0 671 89.9285 1794 2674 2 chr2B.!!$F2 880
5 TraesCS2A01G441700 chr5B 596440004 596440775 771 False 1112.0 1112 92.7840 4 771 1 chr5B.!!$F1 767
6 TraesCS2A01G441700 chr1D 12203014 12203801 787 False 1075.0 1075 91.6770 1 773 1 chr1D.!!$F1 772
7 TraesCS2A01G441700 chr6A 159187646 159188419 773 True 952.0 952 89.1750 1 761 1 chr6A.!!$R2 760
8 TraesCS2A01G441700 chr6A 35564954 35565689 735 True 587.5 881 96.4130 1 766 2 chr6A.!!$R4 765
9 TraesCS2A01G441700 chr7A 16293493 16294240 747 True 928.0 928 89.4530 1 730 1 chr7A.!!$R1 729
10 TraesCS2A01G441700 chr4A 654842931 654843667 736 True 869.0 869 87.8870 1 768 1 chr4A.!!$R1 767
11 TraesCS2A01G441700 chr3A 16011855 16012843 988 False 869.0 869 82.6390 887 1887 1 chr3A.!!$F1 1000
12 TraesCS2A01G441700 chr3A 16231021 16232109 1088 True 697.0 697 78.5910 766 1871 1 chr3A.!!$R1 1105
13 TraesCS2A01G441700 chr3D 5406468 5407374 906 True 828.0 828 83.2050 987 1893 1 chr3D.!!$R1 906
14 TraesCS2A01G441700 chr3B 12936048 12937035 987 False 784.0 784 81.1880 887 1887 1 chr3B.!!$F1 1000
15 TraesCS2A01G441700 chr3B 13415672 13416560 888 False 771.0 771 82.4380 984 1871 1 chr3B.!!$F3 887
16 TraesCS2A01G441700 chr3B 13248796 13249657 861 False 728.0 728 82.0190 994 1849 1 chr3B.!!$F2 855
17 TraesCS2A01G441700 chr4D 384957783 384958660 877 False 446.0 520 87.6340 1 766 2 chr4D.!!$F1 765

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
919 1074 1.139989 GACCACACGACATGTCACAG 58.86 55.0 24.93 15.55 40.64 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1887 2071 0.034896 CAACTACAAGACCACCGCCT 59.965 55.0 0.0 0.0 0.0 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
72 73 3.367395 GCCAAAACTGCAGTATTTCCTCC 60.367 47.826 22.01 7.00 0.00 4.30
202 213 1.899437 ATCGTCGGCCATGGACAAGT 61.899 55.000 20.22 0.00 34.04 3.16
546 678 2.223782 GCGAGCATGGCCATTCATTTTA 60.224 45.455 17.92 0.00 31.66 1.52
588 720 6.623549 CGTCCATGTTGCAACTTCTATGAAAT 60.624 38.462 28.61 9.08 0.00 2.17
785 918 6.710744 CAGCCTAAGGTTAGAGTGAAGAAAAA 59.289 38.462 0.00 0.00 32.47 1.94
786 919 6.937465 AGCCTAAGGTTAGAGTGAAGAAAAAG 59.063 38.462 0.00 0.00 32.47 2.27
810 943 2.094390 ACATGCATGCACAAGATGGTTC 60.094 45.455 25.37 0.00 0.00 3.62
811 944 1.618487 TGCATGCACAAGATGGTTCA 58.382 45.000 18.46 0.00 0.00 3.18
915 1070 3.994392 AGTAAATGACCACACGACATGTC 59.006 43.478 16.21 16.21 40.64 3.06
919 1074 1.139989 GACCACACGACATGTCACAG 58.860 55.000 24.93 15.55 40.64 3.66
996 1168 8.970691 AACAGTAATGAATTATCTTGTGCAAC 57.029 30.769 0.00 0.00 37.35 4.17
1014 1186 2.908015 GGAATGCAGGGCGGTAGA 59.092 61.111 0.00 0.00 0.00 2.59
1092 1264 5.116084 ACTTACCAGGTATGTGAATGCAT 57.884 39.130 15.79 0.00 0.00 3.96
1162 1346 2.749076 GTGCAGAAACCATCTATGTGCA 59.251 45.455 0.00 2.18 36.32 4.57
1346 1530 3.345414 CAACCTCTACGAGTCTGGTACT 58.655 50.000 0.00 0.00 42.80 2.73
1355 1539 2.350868 CGAGTCTGGTACTGTGTGTCTG 60.351 54.545 0.00 0.00 39.07 3.51
1427 1611 1.878656 CGTCGAGCCTCCTCCAAGTT 61.879 60.000 0.00 0.00 34.49 2.66
1491 1675 0.319900 CAACGAGGCCGGATATGAGG 60.320 60.000 5.05 0.00 40.78 3.86
1581 1765 1.622607 CCGGACCATGCTCCACCTTA 61.623 60.000 7.82 0.00 0.00 2.69
1619 1803 4.976116 CAGGGTTTTGAGAAATTCGTCAAC 59.024 41.667 7.16 1.43 32.40 3.18
1766 1950 0.250510 TTGCACTCGCCAATGTGGTA 60.251 50.000 0.00 0.00 40.46 3.25
1823 2007 0.320697 AGGGGTGCGACTAGTTTCAC 59.679 55.000 15.86 15.86 0.00 3.18
1851 2035 0.112995 AATCCCACTGCCATGTGTGT 59.887 50.000 9.01 0.00 36.30 3.72
1887 2071 5.321927 TCACTAGGTAGATGAGTGTGTGAA 58.678 41.667 0.00 0.00 41.14 3.18
1890 2074 2.234908 AGGTAGATGAGTGTGTGAAGGC 59.765 50.000 0.00 0.00 0.00 4.35
1921 2130 9.151471 GTCTTGTAGTTGCTCATATTTTCTGTA 57.849 33.333 0.00 0.00 0.00 2.74
1922 2131 9.719355 TCTTGTAGTTGCTCATATTTTCTGTAA 57.281 29.630 0.00 0.00 0.00 2.41
1943 2152 8.160521 TGTAATACAACAATTAACTGTGTGCT 57.839 30.769 0.00 0.00 0.00 4.40
1959 2168 7.951591 ACTGTGTGCTTTCCTTTATATTTTGT 58.048 30.769 0.00 0.00 0.00 2.83
2095 2304 4.754618 TCGTGTTCAACAAGATAAGCACAT 59.245 37.500 1.56 0.00 31.88 3.21
2155 2372 3.671008 TGGAACAGCAAGTATGTACGT 57.329 42.857 0.00 0.00 0.00 3.57
2156 2373 4.787260 TGGAACAGCAAGTATGTACGTA 57.213 40.909 0.00 0.00 0.00 3.57
2164 2381 6.929049 ACAGCAAGTATGTACGTAATGCATAT 59.071 34.615 24.79 13.49 38.07 1.78
2212 2429 3.999663 AGTTGTCTAGCACTTCTTGATGC 59.000 43.478 0.00 0.00 42.39 3.91
2239 2456 2.315925 ATGTAGCATCCACGGTTCTG 57.684 50.000 0.00 0.00 0.00 3.02
2244 2461 1.926511 GCATCCACGGTTCTGGCTTG 61.927 60.000 0.00 0.00 0.00 4.01
2303 2520 5.602291 TTATTGTTTTGGGGGTTCCTCTA 57.398 39.130 0.00 0.00 36.20 2.43
2335 2552 6.743575 ATGTTAGTAGCTCATTGTCCAAAC 57.256 37.500 0.00 0.00 0.00 2.93
2345 3983 5.048434 GCTCATTGTCCAAACTAAGAGCTTT 60.048 40.000 0.00 0.00 38.63 3.51
2351 3989 5.650266 TGTCCAAACTAAGAGCTTTGTTTCA 59.350 36.000 16.13 10.84 43.08 2.69
2357 3995 9.693157 CAAACTAAGAGCTTTGTTTCAAAAATG 57.307 29.630 16.13 4.96 43.08 2.32
2368 4006 3.488778 TTCAAAAATGGGCAGCAACAT 57.511 38.095 0.00 0.00 0.00 2.71
2369 4007 4.613925 TTCAAAAATGGGCAGCAACATA 57.386 36.364 2.57 0.00 0.00 2.29
2390 4058 4.150897 ACAACACCACTGATGTACTTGT 57.849 40.909 0.00 0.00 31.92 3.16
2396 4064 3.006967 ACCACTGATGTACTTGTGTCCTC 59.993 47.826 0.00 0.00 0.00 3.71
2397 4065 3.006859 CCACTGATGTACTTGTGTCCTCA 59.993 47.826 0.00 0.00 0.00 3.86
2398 4066 4.503123 CCACTGATGTACTTGTGTCCTCAA 60.503 45.833 0.00 0.00 0.00 3.02
2399 4067 5.240891 CACTGATGTACTTGTGTCCTCAAT 58.759 41.667 0.00 0.00 0.00 2.57
2400 4068 5.702670 CACTGATGTACTTGTGTCCTCAATT 59.297 40.000 0.00 0.00 0.00 2.32
2403 4071 7.936847 ACTGATGTACTTGTGTCCTCAATTAAA 59.063 33.333 0.00 0.00 0.00 1.52
2404 4072 8.322906 TGATGTACTTGTGTCCTCAATTAAAG 57.677 34.615 0.00 0.00 0.00 1.85
2405 4073 7.936847 TGATGTACTTGTGTCCTCAATTAAAGT 59.063 33.333 0.00 0.00 0.00 2.66
2406 4074 9.431887 GATGTACTTGTGTCCTCAATTAAAGTA 57.568 33.333 0.00 0.00 0.00 2.24
2407 4075 8.597662 TGTACTTGTGTCCTCAATTAAAGTAC 57.402 34.615 13.28 13.28 0.00 2.73
2408 4076 7.658575 TGTACTTGTGTCCTCAATTAAAGTACC 59.341 37.037 16.08 4.04 0.00 3.34
2409 4077 6.597562 ACTTGTGTCCTCAATTAAAGTACCA 58.402 36.000 0.00 0.00 0.00 3.25
2410 4078 7.231467 ACTTGTGTCCTCAATTAAAGTACCAT 58.769 34.615 0.00 0.00 0.00 3.55
2411 4079 7.390718 ACTTGTGTCCTCAATTAAAGTACCATC 59.609 37.037 0.00 0.00 0.00 3.51
2412 4080 6.177610 TGTGTCCTCAATTAAAGTACCATCC 58.822 40.000 0.00 0.00 0.00 3.51
2413 4081 5.293569 GTGTCCTCAATTAAAGTACCATCCG 59.706 44.000 0.00 0.00 0.00 4.18
2414 4082 5.046159 TGTCCTCAATTAAAGTACCATCCGT 60.046 40.000 0.00 0.00 0.00 4.69
2415 4083 5.878669 GTCCTCAATTAAAGTACCATCCGTT 59.121 40.000 0.00 0.00 0.00 4.44
2416 4084 6.373495 GTCCTCAATTAAAGTACCATCCGTTT 59.627 38.462 0.00 0.00 0.00 3.60
2417 4085 7.550196 GTCCTCAATTAAAGTACCATCCGTTTA 59.450 37.037 0.00 0.00 0.00 2.01
2418 4086 8.269317 TCCTCAATTAAAGTACCATCCGTTTAT 58.731 33.333 0.00 0.00 0.00 1.40
2419 4087 8.342634 CCTCAATTAAAGTACCATCCGTTTATG 58.657 37.037 0.00 0.00 0.00 1.90
2420 4088 9.104965 CTCAATTAAAGTACCATCCGTTTATGA 57.895 33.333 0.00 0.00 0.00 2.15
2421 4089 9.451002 TCAATTAAAGTACCATCCGTTTATGAA 57.549 29.630 0.00 0.00 0.00 2.57
2429 4097 9.924650 AGTACCATCCGTTTATGAATATAAGTC 57.075 33.333 0.00 0.00 30.84 3.01
2430 4098 9.148104 GTACCATCCGTTTATGAATATAAGTCC 57.852 37.037 0.00 0.00 30.84 3.85
2431 4099 7.741785 ACCATCCGTTTATGAATATAAGTCCA 58.258 34.615 0.00 0.00 30.84 4.02
2432 4100 7.878127 ACCATCCGTTTATGAATATAAGTCCAG 59.122 37.037 0.00 0.00 30.84 3.86
2433 4101 7.878127 CCATCCGTTTATGAATATAAGTCCAGT 59.122 37.037 0.00 0.00 30.84 4.00
2434 4102 9.273016 CATCCGTTTATGAATATAAGTCCAGTT 57.727 33.333 0.00 0.00 30.84 3.16
2436 4104 9.976511 TCCGTTTATGAATATAAGTCCAGTTAG 57.023 33.333 0.00 0.00 30.84 2.34
2437 4105 9.976511 CCGTTTATGAATATAAGTCCAGTTAGA 57.023 33.333 0.00 0.00 30.84 2.10
2452 4120 9.530633 AGTCCAGTTAGATATTTCAATACGAAC 57.469 33.333 0.00 0.00 31.73 3.95
2453 4121 9.530633 GTCCAGTTAGATATTTCAATACGAACT 57.469 33.333 0.00 0.00 31.73 3.01
2465 4133 8.692110 TTTCAATACGAACTACATATGAACGT 57.308 30.769 10.38 14.11 31.73 3.99
2466 4134 9.786105 TTTCAATACGAACTACATATGAACGTA 57.214 29.630 10.38 15.57 38.65 3.57
2467 4135 9.955208 TTCAATACGAACTACATATGAACGTAT 57.045 29.630 10.38 16.84 43.67 3.06
2511 4179 9.352784 TGTAGAAAATTCATTTATTTTGCTCCG 57.647 29.630 0.00 0.00 37.72 4.63
2512 4180 9.353999 GTAGAAAATTCATTTATTTTGCTCCGT 57.646 29.630 0.00 0.00 37.72 4.69
2514 4182 9.353999 AGAAAATTCATTTATTTTGCTCCGTAC 57.646 29.630 0.00 0.00 37.72 3.67
2515 4183 7.734538 AAATTCATTTATTTTGCTCCGTACG 57.265 32.000 8.69 8.69 0.00 3.67
2516 4184 5.866335 TTCATTTATTTTGCTCCGTACGT 57.134 34.783 15.21 0.00 0.00 3.57
2517 4185 6.964741 TTCATTTATTTTGCTCCGTACGTA 57.035 33.333 15.21 0.00 0.00 3.57
2518 4186 6.578020 TCATTTATTTTGCTCCGTACGTAG 57.422 37.500 15.21 9.26 0.00 3.51
2520 4188 6.591062 TCATTTATTTTGCTCCGTACGTAGTT 59.409 34.615 15.21 0.00 37.78 2.24
2521 4189 6.393720 TTTATTTTGCTCCGTACGTAGTTC 57.606 37.500 15.21 0.00 37.78 3.01
2522 4190 3.367992 TTTTGCTCCGTACGTAGTTCA 57.632 42.857 15.21 0.00 37.78 3.18
2523 4191 3.581024 TTTGCTCCGTACGTAGTTCAT 57.419 42.857 15.21 0.00 37.78 2.57
2524 4192 4.700268 TTTGCTCCGTACGTAGTTCATA 57.300 40.909 15.21 0.00 37.78 2.15
2525 4193 4.906065 TTGCTCCGTACGTAGTTCATAT 57.094 40.909 15.21 0.00 37.78 1.78
2526 4194 4.906065 TGCTCCGTACGTAGTTCATATT 57.094 40.909 15.21 0.00 37.78 1.28
2527 4195 4.603985 TGCTCCGTACGTAGTTCATATTG 58.396 43.478 15.21 0.00 37.78 1.90
2528 4196 4.336153 TGCTCCGTACGTAGTTCATATTGA 59.664 41.667 15.21 0.00 37.78 2.57
2529 4197 5.163632 TGCTCCGTACGTAGTTCATATTGAA 60.164 40.000 15.21 0.00 37.78 2.69
2530 4198 5.745294 GCTCCGTACGTAGTTCATATTGAAA 59.255 40.000 15.21 0.00 37.78 2.69
2531 4199 6.420008 GCTCCGTACGTAGTTCATATTGAAAT 59.580 38.462 15.21 0.00 37.78 2.17
2532 4200 7.358187 GCTCCGTACGTAGTTCATATTGAAATC 60.358 40.741 15.21 0.00 37.78 2.17
2533 4201 7.709947 TCCGTACGTAGTTCATATTGAAATCT 58.290 34.615 15.21 0.00 37.78 2.40
2534 4202 8.192774 TCCGTACGTAGTTCATATTGAAATCTT 58.807 33.333 15.21 0.00 37.78 2.40
2535 4203 8.814235 CCGTACGTAGTTCATATTGAAATCTTT 58.186 33.333 15.21 0.00 37.78 2.52
2562 4230 9.467796 AAAAGTTCTTCTATTTAGGGAATGGAG 57.532 33.333 0.00 0.00 36.70 3.86
2565 4233 4.913968 TCTTCTATTTAGGGAATGGAGGGG 59.086 45.833 0.00 0.00 36.70 4.79
2581 4254 3.438078 GGAGGGGGTAGTAGTCATCATCA 60.438 52.174 0.00 0.00 0.00 3.07
2583 4256 3.967987 AGGGGGTAGTAGTCATCATCAAC 59.032 47.826 0.00 0.00 0.00 3.18
2603 4276 0.813184 ATTTCCCGTGATGCTGCAAG 59.187 50.000 6.36 0.00 0.00 4.01
2640 4313 5.070714 TGCTACTACTTCCACCAACTTAACA 59.929 40.000 0.00 0.00 0.00 2.41
2654 4327 6.837048 ACCAACTTAACAAATAGACTTGGGTT 59.163 34.615 0.00 0.00 32.72 4.11
2674 4347 5.118510 GGGTTTGTACTTGCGAAAAATCATG 59.881 40.000 0.00 0.00 0.00 3.07
2675 4348 5.918011 GGTTTGTACTTGCGAAAAATCATGA 59.082 36.000 0.00 0.00 0.00 3.07
2676 4349 6.088085 GGTTTGTACTTGCGAAAAATCATGAG 59.912 38.462 0.09 0.00 0.00 2.90
2677 4350 6.552859 TTGTACTTGCGAAAAATCATGAGA 57.447 33.333 0.09 0.00 0.00 3.27
2678 4351 6.552859 TGTACTTGCGAAAAATCATGAGAA 57.447 33.333 0.09 0.00 0.00 2.87
2679 4352 6.964908 TGTACTTGCGAAAAATCATGAGAAA 58.035 32.000 0.09 0.00 0.00 2.52
2680 4353 7.077605 TGTACTTGCGAAAAATCATGAGAAAG 58.922 34.615 0.09 0.00 0.00 2.62
2681 4354 5.464168 ACTTGCGAAAAATCATGAGAAAGG 58.536 37.500 0.09 0.00 0.00 3.11
2682 4355 5.010012 ACTTGCGAAAAATCATGAGAAAGGT 59.990 36.000 0.09 0.00 0.00 3.50
2683 4356 4.797471 TGCGAAAAATCATGAGAAAGGTG 58.203 39.130 0.09 0.00 0.00 4.00
2684 4357 4.278170 TGCGAAAAATCATGAGAAAGGTGT 59.722 37.500 0.09 0.00 0.00 4.16
2685 4358 5.471797 TGCGAAAAATCATGAGAAAGGTGTA 59.528 36.000 0.09 0.00 0.00 2.90
2686 4359 6.024049 GCGAAAAATCATGAGAAAGGTGTAG 58.976 40.000 0.09 0.00 0.00 2.74
2687 4360 6.024049 CGAAAAATCATGAGAAAGGTGTAGC 58.976 40.000 0.09 0.00 0.00 3.58
2688 4361 6.128172 CGAAAAATCATGAGAAAGGTGTAGCT 60.128 38.462 0.09 0.00 0.00 3.32
2689 4362 6.506500 AAAATCATGAGAAAGGTGTAGCTG 57.493 37.500 0.09 0.00 0.00 4.24
2690 4363 2.977914 TCATGAGAAAGGTGTAGCTGC 58.022 47.619 0.00 0.00 0.00 5.25
2691 4364 2.568956 TCATGAGAAAGGTGTAGCTGCT 59.431 45.455 7.57 7.57 0.00 4.24
2692 4365 2.751166 TGAGAAAGGTGTAGCTGCTC 57.249 50.000 4.91 0.00 0.00 4.26
2693 4366 1.276421 TGAGAAAGGTGTAGCTGCTCC 59.724 52.381 14.33 14.33 0.00 4.70
2694 4367 0.615850 AGAAAGGTGTAGCTGCTCCC 59.384 55.000 17.89 10.57 0.00 4.30
2695 4368 0.741221 GAAAGGTGTAGCTGCTCCCG 60.741 60.000 17.89 0.00 0.00 5.14
2696 4369 2.185310 AAAGGTGTAGCTGCTCCCGG 62.185 60.000 17.89 0.00 0.00 5.73
2697 4370 4.162690 GGTGTAGCTGCTCCCGGG 62.163 72.222 16.85 16.85 0.00 5.73
2698 4371 3.391382 GTGTAGCTGCTCCCGGGT 61.391 66.667 22.86 1.40 0.00 5.28
2699 4372 3.390521 TGTAGCTGCTCCCGGGTG 61.391 66.667 22.86 20.53 0.00 4.61
2700 4373 3.391382 GTAGCTGCTCCCGGGTGT 61.391 66.667 22.86 4.33 0.00 4.16
2701 4374 2.056223 GTAGCTGCTCCCGGGTGTA 61.056 63.158 22.86 17.44 0.00 2.90
2702 4375 1.756950 TAGCTGCTCCCGGGTGTAG 60.757 63.158 29.78 29.78 0.00 2.74
2703 4376 4.162690 GCTGCTCCCGGGTGTAGG 62.163 72.222 32.90 19.37 0.00 3.18
2704 4377 2.683933 CTGCTCCCGGGTGTAGGT 60.684 66.667 27.40 0.00 0.00 3.08
2705 4378 3.000819 TGCTCCCGGGTGTAGGTG 61.001 66.667 22.86 4.42 0.00 4.00
2706 4379 4.468689 GCTCCCGGGTGTAGGTGC 62.469 72.222 22.86 10.65 35.69 5.01
2707 4380 3.000819 CTCCCGGGTGTAGGTGCA 61.001 66.667 22.86 0.00 0.00 4.57
2708 4381 3.310860 CTCCCGGGTGTAGGTGCAC 62.311 68.421 22.86 8.80 38.56 4.57
2721 4394 2.112928 TGCACCCGCATGAACAGT 59.887 55.556 0.00 0.00 45.36 3.55
2722 4395 1.373059 TGCACCCGCATGAACAGTA 59.627 52.632 0.00 0.00 45.36 2.74
2723 4396 0.953471 TGCACCCGCATGAACAGTAC 60.953 55.000 0.00 0.00 45.36 2.73
2724 4397 0.953471 GCACCCGCATGAACAGTACA 60.953 55.000 0.00 0.00 38.36 2.90
2725 4398 0.796312 CACCCGCATGAACAGTACAC 59.204 55.000 0.00 0.00 0.00 2.90
2726 4399 0.394938 ACCCGCATGAACAGTACACA 59.605 50.000 0.00 0.00 0.00 3.72
2727 4400 1.003118 ACCCGCATGAACAGTACACAT 59.997 47.619 0.00 0.00 0.00 3.21
2728 4401 1.398041 CCCGCATGAACAGTACACATG 59.602 52.381 0.00 13.81 42.60 3.21
2729 4402 2.345876 CCGCATGAACAGTACACATGA 58.654 47.619 18.97 0.00 42.41 3.07
2730 4403 2.741517 CCGCATGAACAGTACACATGAA 59.258 45.455 18.97 0.00 42.41 2.57
2731 4404 3.188254 CCGCATGAACAGTACACATGAAA 59.812 43.478 18.97 0.00 42.41 2.69
2732 4405 4.320129 CCGCATGAACAGTACACATGAAAA 60.320 41.667 18.97 0.00 42.41 2.29
2733 4406 4.847757 CGCATGAACAGTACACATGAAAAG 59.152 41.667 18.97 8.50 42.41 2.27
2734 4407 5.334028 CGCATGAACAGTACACATGAAAAGA 60.334 40.000 18.97 0.00 42.41 2.52
2735 4408 6.437928 GCATGAACAGTACACATGAAAAGAA 58.562 36.000 18.97 0.00 42.41 2.52
2736 4409 6.360681 GCATGAACAGTACACATGAAAAGAAC 59.639 38.462 18.97 0.00 42.41 3.01
2737 4410 6.993786 TGAACAGTACACATGAAAAGAACA 57.006 33.333 0.00 0.00 0.00 3.18
2738 4411 7.015226 TGAACAGTACACATGAAAAGAACAG 57.985 36.000 0.00 0.00 0.00 3.16
2739 4412 6.821160 TGAACAGTACACATGAAAAGAACAGA 59.179 34.615 0.00 0.00 0.00 3.41
2740 4413 7.335673 TGAACAGTACACATGAAAAGAACAGAA 59.664 33.333 0.00 0.00 0.00 3.02
2741 4414 7.624360 ACAGTACACATGAAAAGAACAGAAA 57.376 32.000 0.00 0.00 0.00 2.52
2742 4415 8.050778 ACAGTACACATGAAAAGAACAGAAAA 57.949 30.769 0.00 0.00 0.00 2.29
2743 4416 8.686334 ACAGTACACATGAAAAGAACAGAAAAT 58.314 29.630 0.00 0.00 0.00 1.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 7.925043 TTTTTAATACGGAGGAAATACTGCA 57.075 32.000 0.00 0.00 0.00 4.41
163 174 1.823470 TCAAACAAGCAGCGGCAGT 60.823 52.632 12.44 6.35 44.61 4.40
322 355 1.367471 CAGTGCCTTGTGGACTCGA 59.633 57.895 0.00 0.00 34.57 4.04
500 632 1.616327 AGACCAGGTGGCATGCCTA 60.616 57.895 35.53 20.20 39.32 3.93
546 678 0.396811 ACGTTCTTAGCTGGCCTTGT 59.603 50.000 3.32 0.00 0.00 3.16
785 918 3.129813 CCATCTTGTGCATGCATGTAACT 59.870 43.478 25.64 4.73 0.00 2.24
786 919 3.119388 ACCATCTTGTGCATGCATGTAAC 60.119 43.478 25.64 23.52 0.00 2.50
810 943 4.391216 GCAGATGGATTCCAACGATAGATG 59.609 45.833 9.98 1.68 36.95 2.90
811 944 4.285517 AGCAGATGGATTCCAACGATAGAT 59.714 41.667 9.98 0.00 36.95 1.98
973 1145 6.688385 CCGTTGCACAAGATAATTCATTACTG 59.312 38.462 0.00 0.00 0.00 2.74
975 1147 6.781138 TCCGTTGCACAAGATAATTCATTAC 58.219 36.000 0.00 0.00 0.00 1.89
996 1168 2.588877 CTACCGCCCTGCATTCCG 60.589 66.667 0.00 0.00 0.00 4.30
1014 1186 1.304134 GGCCCAATTCTTCCCACGT 60.304 57.895 0.00 0.00 0.00 4.49
1092 1264 6.788598 AACCATGCATTATGTATTTCCACA 57.211 33.333 0.00 0.00 34.87 4.17
1346 1530 1.368950 GAGCAGGCTCAGACACACA 59.631 57.895 16.03 0.00 42.31 3.72
1507 1691 2.908940 CATTGCGATGGCCCTCCC 60.909 66.667 5.98 0.00 38.85 4.30
1535 1719 3.769300 TGAGCAGGTAAGCATTCTCACTA 59.231 43.478 0.00 0.00 36.85 2.74
1619 1803 3.777925 CGGCAGCGGAAGTGTTCG 61.778 66.667 0.00 0.00 0.00 3.95
1823 2007 1.156645 GCAGTGGGATTCGCAGCTAG 61.157 60.000 3.31 0.00 35.81 3.42
1851 2035 2.248248 CCTAGTGAGTGGTGGTGAGAA 58.752 52.381 0.00 0.00 0.00 2.87
1887 2071 0.034896 CAACTACAAGACCACCGCCT 59.965 55.000 0.00 0.00 0.00 5.52
1890 2074 1.270094 TGAGCAACTACAAGACCACCG 60.270 52.381 0.00 0.00 0.00 4.94
1921 2130 7.651704 GGAAAGCACACAGTTAATTGTTGTATT 59.348 33.333 0.08 4.09 0.00 1.89
1922 2131 7.014230 AGGAAAGCACACAGTTAATTGTTGTAT 59.986 33.333 0.08 0.00 0.00 2.29
1959 2168 6.827586 ATGTATTACCGCTTCCTTTTCAAA 57.172 33.333 0.00 0.00 0.00 2.69
2022 2231 3.566322 CGGTCAGGTTGGTTTGACAAATA 59.434 43.478 3.49 0.00 44.23 1.40
2051 2260 9.019764 ACACGATAAATTGCAATTTTATGCTAC 57.980 29.630 35.18 19.40 46.54 3.58
2212 2429 0.969149 TGGATGCTACATAGGGCGAG 59.031 55.000 0.00 0.00 0.00 5.03
2239 2456 4.893424 TTTCTGTTTCACAGTACAAGCC 57.107 40.909 3.87 0.00 46.03 4.35
2244 2461 5.438761 AGCCAATTTCTGTTTCACAGTAC 57.561 39.130 3.87 0.00 46.03 2.73
2335 2552 6.073602 GCCCATTTTTGAAACAAAGCTCTTAG 60.074 38.462 0.00 0.00 0.00 2.18
2345 3983 2.941720 GTTGCTGCCCATTTTTGAAACA 59.058 40.909 0.00 0.00 0.00 2.83
2351 3989 4.064388 GTTGTATGTTGCTGCCCATTTTT 58.936 39.130 7.13 0.00 0.00 1.94
2357 3995 0.243636 GGTGTTGTATGTTGCTGCCC 59.756 55.000 0.00 0.00 0.00 5.36
2368 4006 5.053811 CACAAGTACATCAGTGGTGTTGTA 58.946 41.667 15.58 3.47 37.67 2.41
2369 4007 3.876914 CACAAGTACATCAGTGGTGTTGT 59.123 43.478 15.58 10.41 39.47 3.32
2390 4058 5.046159 ACGGATGGTACTTTAATTGAGGACA 60.046 40.000 7.93 0.00 29.12 4.02
2403 4071 9.924650 GACTTATATTCATAAACGGATGGTACT 57.075 33.333 0.00 0.00 0.00 2.73
2404 4072 9.148104 GGACTTATATTCATAAACGGATGGTAC 57.852 37.037 0.00 0.00 0.00 3.34
2405 4073 8.872134 TGGACTTATATTCATAAACGGATGGTA 58.128 33.333 0.00 0.00 0.00 3.25
2406 4074 7.741785 TGGACTTATATTCATAAACGGATGGT 58.258 34.615 0.00 0.00 0.00 3.55
2407 4075 7.878127 ACTGGACTTATATTCATAAACGGATGG 59.122 37.037 0.00 0.00 0.00 3.51
2408 4076 8.833231 ACTGGACTTATATTCATAAACGGATG 57.167 34.615 0.00 0.00 0.00 3.51
2410 4078 9.976511 CTAACTGGACTTATATTCATAAACGGA 57.023 33.333 0.00 0.00 0.00 4.69
2411 4079 9.976511 TCTAACTGGACTTATATTCATAAACGG 57.023 33.333 0.00 0.00 0.00 4.44
2426 4094 9.530633 GTTCGTATTGAAATATCTAACTGGACT 57.469 33.333 0.00 0.00 38.60 3.85
2427 4095 9.530633 AGTTCGTATTGAAATATCTAACTGGAC 57.469 33.333 0.00 0.00 38.60 4.02
2439 4107 9.309516 ACGTTCATATGTAGTTCGTATTGAAAT 57.690 29.630 1.90 0.00 38.60 2.17
2440 4108 8.692110 ACGTTCATATGTAGTTCGTATTGAAA 57.308 30.769 1.90 0.00 38.60 2.69
2441 4109 9.955208 ATACGTTCATATGTAGTTCGTATTGAA 57.045 29.630 17.65 0.00 39.01 2.69
2485 4153 9.352784 CGGAGCAAAATAAATGAATTTTCTACA 57.647 29.630 0.00 0.00 37.03 2.74
2486 4154 9.353999 ACGGAGCAAAATAAATGAATTTTCTAC 57.646 29.630 0.00 0.00 37.03 2.59
2488 4156 9.353999 GTACGGAGCAAAATAAATGAATTTTCT 57.646 29.630 0.00 0.00 37.03 2.52
2489 4157 8.311120 CGTACGGAGCAAAATAAATGAATTTTC 58.689 33.333 7.57 0.00 37.03 2.29
2490 4158 7.810759 ACGTACGGAGCAAAATAAATGAATTTT 59.189 29.630 21.06 0.00 39.14 1.82
2491 4159 7.309920 ACGTACGGAGCAAAATAAATGAATTT 58.690 30.769 21.06 0.00 0.00 1.82
2492 4160 6.848451 ACGTACGGAGCAAAATAAATGAATT 58.152 32.000 21.06 0.00 0.00 2.17
2493 4161 6.431198 ACGTACGGAGCAAAATAAATGAAT 57.569 33.333 21.06 0.00 0.00 2.57
2494 4162 5.866335 ACGTACGGAGCAAAATAAATGAA 57.134 34.783 21.06 0.00 0.00 2.57
2495 4163 6.101332 ACTACGTACGGAGCAAAATAAATGA 58.899 36.000 27.33 0.00 0.00 2.57
2496 4164 6.340537 ACTACGTACGGAGCAAAATAAATG 57.659 37.500 27.33 0.06 0.00 2.32
2497 4165 6.591062 TGAACTACGTACGGAGCAAAATAAAT 59.409 34.615 27.33 1.15 0.00 1.40
2498 4166 5.925397 TGAACTACGTACGGAGCAAAATAAA 59.075 36.000 27.33 1.98 0.00 1.40
2499 4167 5.468592 TGAACTACGTACGGAGCAAAATAA 58.531 37.500 27.33 3.59 0.00 1.40
2500 4168 5.058149 TGAACTACGTACGGAGCAAAATA 57.942 39.130 27.33 5.46 0.00 1.40
2501 4169 3.916761 TGAACTACGTACGGAGCAAAAT 58.083 40.909 27.33 8.63 0.00 1.82
2502 4170 3.367992 TGAACTACGTACGGAGCAAAA 57.632 42.857 27.33 8.00 0.00 2.44
2503 4171 3.581024 ATGAACTACGTACGGAGCAAA 57.419 42.857 27.33 12.91 0.00 3.68
2504 4172 4.906065 ATATGAACTACGTACGGAGCAA 57.094 40.909 27.33 13.28 0.00 3.91
2505 4173 4.336153 TCAATATGAACTACGTACGGAGCA 59.664 41.667 27.33 17.98 0.00 4.26
2506 4174 4.852138 TCAATATGAACTACGTACGGAGC 58.148 43.478 27.33 12.60 0.00 4.70
2507 4175 7.861372 AGATTTCAATATGAACTACGTACGGAG 59.139 37.037 25.90 25.90 35.89 4.63
2508 4176 7.709947 AGATTTCAATATGAACTACGTACGGA 58.290 34.615 21.06 10.81 35.89 4.69
2509 4177 7.925703 AGATTTCAATATGAACTACGTACGG 57.074 36.000 21.06 5.00 35.89 4.02
2536 4204 9.467796 CTCCATTCCCTAAATAGAAGAACTTTT 57.532 33.333 0.00 0.00 0.00 2.27
2537 4205 8.055790 CCTCCATTCCCTAAATAGAAGAACTTT 58.944 37.037 0.00 0.00 0.00 2.66
2538 4206 7.366913 CCCTCCATTCCCTAAATAGAAGAACTT 60.367 40.741 0.00 0.00 0.00 2.66
2539 4207 6.101881 CCCTCCATTCCCTAAATAGAAGAACT 59.898 42.308 0.00 0.00 0.00 3.01
2540 4208 6.299922 CCCTCCATTCCCTAAATAGAAGAAC 58.700 44.000 0.00 0.00 0.00 3.01
2541 4209 5.372661 CCCCTCCATTCCCTAAATAGAAGAA 59.627 44.000 0.00 0.00 0.00 2.52
2542 4210 4.913968 CCCCTCCATTCCCTAAATAGAAGA 59.086 45.833 0.00 0.00 0.00 2.87
2543 4211 4.043435 CCCCCTCCATTCCCTAAATAGAAG 59.957 50.000 0.00 0.00 0.00 2.85
2544 4212 3.987501 CCCCCTCCATTCCCTAAATAGAA 59.012 47.826 0.00 0.00 0.00 2.10
2545 4213 3.049778 ACCCCCTCCATTCCCTAAATAGA 60.050 47.826 0.00 0.00 0.00 1.98
2546 4214 3.336676 ACCCCCTCCATTCCCTAAATAG 58.663 50.000 0.00 0.00 0.00 1.73
2547 4215 3.465363 ACCCCCTCCATTCCCTAAATA 57.535 47.619 0.00 0.00 0.00 1.40
2548 4216 2.320613 ACCCCCTCCATTCCCTAAAT 57.679 50.000 0.00 0.00 0.00 1.40
2549 4217 2.048150 ACTACCCCCTCCATTCCCTAAA 59.952 50.000 0.00 0.00 0.00 1.85
2550 4218 1.660430 ACTACCCCCTCCATTCCCTAA 59.340 52.381 0.00 0.00 0.00 2.69
2551 4219 1.336347 ACTACCCCCTCCATTCCCTA 58.664 55.000 0.00 0.00 0.00 3.53
2552 4220 1.223337 CTACTACCCCCTCCATTCCCT 59.777 57.143 0.00 0.00 0.00 4.20
2553 4221 1.061579 ACTACTACCCCCTCCATTCCC 60.062 57.143 0.00 0.00 0.00 3.97
2554 4222 2.327373 GACTACTACCCCCTCCATTCC 58.673 57.143 0.00 0.00 0.00 3.01
2555 4223 3.042059 TGACTACTACCCCCTCCATTC 57.958 52.381 0.00 0.00 0.00 2.67
2556 4224 3.051341 TGATGACTACTACCCCCTCCATT 60.051 47.826 0.00 0.00 0.00 3.16
2557 4225 2.522705 TGATGACTACTACCCCCTCCAT 59.477 50.000 0.00 0.00 0.00 3.41
2558 4226 1.934480 TGATGACTACTACCCCCTCCA 59.066 52.381 0.00 0.00 0.00 3.86
2559 4227 2.769602 TGATGACTACTACCCCCTCC 57.230 55.000 0.00 0.00 0.00 4.30
2560 4228 3.845860 TGATGATGACTACTACCCCCTC 58.154 50.000 0.00 0.00 0.00 4.30
2561 4229 3.967987 GTTGATGATGACTACTACCCCCT 59.032 47.826 0.00 0.00 0.00 4.79
2562 4230 3.709653 TGTTGATGATGACTACTACCCCC 59.290 47.826 0.00 0.00 0.00 5.40
2565 4233 6.483640 GGGAAATGTTGATGATGACTACTACC 59.516 42.308 0.00 0.00 0.00 3.18
2581 4254 0.527565 GCAGCATCACGGGAAATGTT 59.472 50.000 0.00 0.00 0.00 2.71
2583 4256 0.527113 TTGCAGCATCACGGGAAATG 59.473 50.000 0.00 0.00 0.00 2.32
2640 4313 5.048991 CGCAAGTACAAACCCAAGTCTATTT 60.049 40.000 0.00 0.00 0.00 1.40
2654 4327 6.552859 TCTCATGATTTTTCGCAAGTACAA 57.447 33.333 0.00 0.00 39.48 2.41
2674 4347 1.406205 GGGAGCAGCTACACCTTTCTC 60.406 57.143 7.05 0.00 0.00 2.87
2675 4348 0.615850 GGGAGCAGCTACACCTTTCT 59.384 55.000 7.05 0.00 0.00 2.52
2676 4349 0.741221 CGGGAGCAGCTACACCTTTC 60.741 60.000 7.05 0.00 0.00 2.62
2677 4350 1.296715 CGGGAGCAGCTACACCTTT 59.703 57.895 7.05 0.00 0.00 3.11
2678 4351 2.660064 CCGGGAGCAGCTACACCTT 61.660 63.158 7.05 0.00 0.00 3.50
2679 4352 3.077556 CCGGGAGCAGCTACACCT 61.078 66.667 7.05 0.00 0.00 4.00
2680 4353 4.162690 CCCGGGAGCAGCTACACC 62.163 72.222 18.48 3.52 0.00 4.16
2681 4354 3.391382 ACCCGGGAGCAGCTACAC 61.391 66.667 32.02 0.00 0.00 2.90
2682 4355 2.791613 TACACCCGGGAGCAGCTACA 62.792 60.000 32.02 0.00 0.00 2.74
2683 4356 2.017559 CTACACCCGGGAGCAGCTAC 62.018 65.000 32.02 0.00 0.00 3.58
2684 4357 1.756950 CTACACCCGGGAGCAGCTA 60.757 63.158 32.02 6.65 0.00 3.32
2685 4358 3.077556 CTACACCCGGGAGCAGCT 61.078 66.667 32.02 5.62 0.00 4.24
2686 4359 4.162690 CCTACACCCGGGAGCAGC 62.163 72.222 32.02 0.00 0.00 5.25
2687 4360 2.683933 ACCTACACCCGGGAGCAG 60.684 66.667 32.02 20.37 0.00 4.24
2688 4361 3.000819 CACCTACACCCGGGAGCA 61.001 66.667 32.02 9.68 0.00 4.26
2689 4362 4.468689 GCACCTACACCCGGGAGC 62.469 72.222 32.02 14.77 32.74 4.70
2690 4363 3.000819 TGCACCTACACCCGGGAG 61.001 66.667 32.02 24.28 0.00 4.30
2691 4364 3.315949 GTGCACCTACACCCGGGA 61.316 66.667 32.02 3.04 34.35 5.14
2705 4378 0.953471 TGTACTGTTCATGCGGGTGC 60.953 55.000 0.00 0.00 43.20 5.01
2706 4379 0.796312 GTGTACTGTTCATGCGGGTG 59.204 55.000 0.00 0.00 0.00 4.61
2707 4380 0.394938 TGTGTACTGTTCATGCGGGT 59.605 50.000 0.00 0.00 0.00 5.28
2708 4381 1.398041 CATGTGTACTGTTCATGCGGG 59.602 52.381 0.00 0.00 33.81 6.13
2709 4382 2.345876 TCATGTGTACTGTTCATGCGG 58.654 47.619 12.22 0.00 38.82 5.69
2710 4383 4.403015 TTTCATGTGTACTGTTCATGCG 57.597 40.909 12.22 0.00 38.82 4.73
2711 4384 6.000891 TCTTTTCATGTGTACTGTTCATGC 57.999 37.500 12.22 0.00 38.82 4.06
2712 4385 7.416817 TGTTCTTTTCATGTGTACTGTTCATG 58.583 34.615 11.35 11.35 39.87 3.07
2713 4386 7.498900 TCTGTTCTTTTCATGTGTACTGTTCAT 59.501 33.333 0.00 0.00 0.00 2.57
2714 4387 6.821160 TCTGTTCTTTTCATGTGTACTGTTCA 59.179 34.615 0.00 0.00 0.00 3.18
2715 4388 7.246674 TCTGTTCTTTTCATGTGTACTGTTC 57.753 36.000 0.00 0.00 0.00 3.18
2716 4389 7.624360 TTCTGTTCTTTTCATGTGTACTGTT 57.376 32.000 0.00 0.00 0.00 3.16
2717 4390 7.624360 TTTCTGTTCTTTTCATGTGTACTGT 57.376 32.000 0.00 0.00 0.00 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.