Multiple sequence alignment - TraesCS2A01G440000

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G440000 chr2A 100.000 3878 0 0 1 3878 690926897 690930774 0.000000e+00 7162.0
1 TraesCS2A01G440000 chr2D 89.166 2843 168 50 110 2898 548083305 548080549 0.000000e+00 3415.0
2 TraesCS2A01G440000 chr2D 95.631 206 7 2 2953 3158 548080536 548080333 2.890000e-86 329.0
3 TraesCS2A01G440000 chr2D 88.235 289 13 11 3590 3878 548079977 548079710 3.740000e-85 326.0
4 TraesCS2A01G440000 chr2D 90.854 164 10 2 3276 3439 548080145 548079987 8.440000e-52 215.0
5 TraesCS2A01G440000 chr2D 83.732 209 27 3 1295 1497 68467435 68467228 1.420000e-44 191.0
6 TraesCS2A01G440000 chr2B 90.977 2538 123 43 429 2922 655012552 655010077 0.000000e+00 3321.0
7 TraesCS2A01G440000 chr2B 86.810 326 33 6 3203 3522 655009936 655009615 4.770000e-94 355.0
8 TraesCS2A01G440000 chr2B 88.095 294 17 10 3590 3878 655009600 655009320 2.230000e-87 333.0
9 TraesCS2A01G440000 chr2B 91.447 152 9 4 2953 3103 655010079 655009931 5.080000e-49 206.0
10 TraesCS2A01G440000 chr6A 83.254 1678 210 43 1093 2747 53506405 53504776 0.000000e+00 1476.0
11 TraesCS2A01G440000 chr6A 81.510 768 123 15 2040 2800 495452169 495452924 7.120000e-172 614.0
12 TraesCS2A01G440000 chr6A 77.974 681 116 25 1292 1956 495450999 495451661 2.810000e-106 396.0
13 TraesCS2A01G440000 chr6A 76.471 374 44 27 3202 3558 53504297 53503951 3.100000e-36 163.0
14 TraesCS2A01G440000 chr5B 76.967 1589 298 48 1230 2800 458386248 458387786 0.000000e+00 845.0
15 TraesCS2A01G440000 chr6D 84.504 826 100 19 1901 2716 43058557 43057750 0.000000e+00 791.0
16 TraesCS2A01G440000 chr6D 81.807 830 101 29 1089 1905 43070590 43069798 0.000000e+00 651.0
17 TraesCS2A01G440000 chr6D 81.218 772 123 18 2040 2800 348084334 348083574 1.540000e-168 603.0
18 TraesCS2A01G440000 chr6D 78.299 682 121 18 1286 1956 348085341 348084676 7.750000e-112 414.0
19 TraesCS2A01G440000 chr6B 85.320 688 85 11 2116 2800 103663970 103664644 0.000000e+00 697.0
20 TraesCS2A01G440000 chr6B 81.404 769 122 18 2040 2800 532044904 532045659 3.310000e-170 608.0
21 TraesCS2A01G440000 chr6B 82.495 497 63 12 1124 1616 103663495 103663971 7.750000e-112 414.0
22 TraesCS2A01G440000 chr6B 77.551 686 121 21 1286 1956 532044003 532044670 2.190000e-102 383.0
23 TraesCS2A01G440000 chr6B 76.786 280 32 22 3293 3558 103664963 103665223 4.070000e-25 126.0
24 TraesCS2A01G440000 chr6B 96.000 50 2 0 3155 3204 44840160 44840209 8.930000e-12 82.4
25 TraesCS2A01G440000 chr5D 81.332 766 125 14 2040 2800 381980170 381980922 1.190000e-169 606.0
26 TraesCS2A01G440000 chr1B 81.967 122 19 3 16 136 489501640 489501521 2.470000e-17 100.0
27 TraesCS2A01G440000 chr7B 79.545 88 12 3 2979 3065 703956588 703956506 1.500000e-04 58.4
28 TraesCS2A01G440000 chr1A 94.595 37 1 1 3177 3213 328258340 328258305 5.410000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G440000 chr2A 690926897 690930774 3877 False 7162.000000 7162 100.000000 1 3878 1 chr2A.!!$F1 3877
1 TraesCS2A01G440000 chr2D 548079710 548083305 3595 True 1071.250000 3415 90.971500 110 3878 4 chr2D.!!$R2 3768
2 TraesCS2A01G440000 chr2B 655009320 655012552 3232 True 1053.750000 3321 89.332250 429 3878 4 chr2B.!!$R1 3449
3 TraesCS2A01G440000 chr6A 53503951 53506405 2454 True 819.500000 1476 79.862500 1093 3558 2 chr6A.!!$R1 2465
4 TraesCS2A01G440000 chr6A 495450999 495452924 1925 False 505.000000 614 79.742000 1292 2800 2 chr6A.!!$F1 1508
5 TraesCS2A01G440000 chr5B 458386248 458387786 1538 False 845.000000 845 76.967000 1230 2800 1 chr5B.!!$F1 1570
6 TraesCS2A01G440000 chr6D 43057750 43058557 807 True 791.000000 791 84.504000 1901 2716 1 chr6D.!!$R1 815
7 TraesCS2A01G440000 chr6D 43069798 43070590 792 True 651.000000 651 81.807000 1089 1905 1 chr6D.!!$R2 816
8 TraesCS2A01G440000 chr6D 348083574 348085341 1767 True 508.500000 603 79.758500 1286 2800 2 chr6D.!!$R3 1514
9 TraesCS2A01G440000 chr6B 532044003 532045659 1656 False 495.500000 608 79.477500 1286 2800 2 chr6B.!!$F3 1514
10 TraesCS2A01G440000 chr6B 103663495 103665223 1728 False 412.333333 697 81.533667 1124 3558 3 chr6B.!!$F2 2434
11 TraesCS2A01G440000 chr5D 381980170 381980922 752 False 606.000000 606 81.332000 2040 2800 1 chr5D.!!$F1 760

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
49 50 0.034896 TCCGAGAAAACAGCCACCTC 59.965 55.0 0.0 0.0 0.00 3.85 F
54 55 0.035739 GAAAACAGCCACCTCCGGTA 59.964 55.0 0.0 0.0 32.11 4.02 F
847 895 0.098200 GGGCGTCCGTTATTGCTTTC 59.902 55.0 0.0 0.0 0.00 2.62 F
848 896 0.098200 GGCGTCCGTTATTGCTTTCC 59.902 55.0 0.0 0.0 0.00 3.13 F
849 897 0.247537 GCGTCCGTTATTGCTTTCCG 60.248 55.0 0.0 0.0 0.00 4.30 F
850 898 0.372334 CGTCCGTTATTGCTTTCCGG 59.628 55.0 0.0 0.0 39.98 5.14 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1276 1353 1.067516 CCCTGCCAGACAAACAAACAG 59.932 52.381 0.00 0.0 0.00 3.16 R
1687 1785 2.202987 GGCGCATCCAGAGTCCTG 60.203 66.667 10.83 0.0 40.09 3.86 R
2559 3164 0.314935 TCGACGGGTACTTCCACAAC 59.685 55.000 0.00 0.0 38.11 3.32 R
2802 3624 2.202676 GCAGACTTCGGAGCCTCG 60.203 66.667 0.00 0.0 0.00 4.63 R
2820 3642 4.950050 TCTGTGAAGTCTTCTCTTTCACC 58.050 43.478 13.67 0.0 31.34 4.02 R
2891 3716 2.965831 TCTCAGAGTTACACCAGTTGCT 59.034 45.455 0.00 0.0 0.00 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 1.641192 AGTCCTCCTCCCCAAAAATCC 59.359 52.381 0.00 0.00 0.00 3.01
22 23 1.007607 TCCTCCTCCCCAAAAATCCC 58.992 55.000 0.00 0.00 0.00 3.85
23 24 0.709992 CCTCCTCCCCAAAAATCCCA 59.290 55.000 0.00 0.00 0.00 4.37
24 25 1.619704 CCTCCTCCCCAAAAATCCCAC 60.620 57.143 0.00 0.00 0.00 4.61
25 26 0.039035 TCCTCCCCAAAAATCCCACG 59.961 55.000 0.00 0.00 0.00 4.94
26 27 0.251608 CCTCCCCAAAAATCCCACGT 60.252 55.000 0.00 0.00 0.00 4.49
27 28 1.173913 CTCCCCAAAAATCCCACGTC 58.826 55.000 0.00 0.00 0.00 4.34
28 29 0.606944 TCCCCAAAAATCCCACGTCG 60.607 55.000 0.00 0.00 0.00 5.12
29 30 1.211709 CCCAAAAATCCCACGTCGC 59.788 57.895 0.00 0.00 0.00 5.19
30 31 1.241315 CCCAAAAATCCCACGTCGCT 61.241 55.000 0.00 0.00 0.00 4.93
31 32 0.168128 CCAAAAATCCCACGTCGCTC 59.832 55.000 0.00 0.00 0.00 5.03
32 33 0.168128 CAAAAATCCCACGTCGCTCC 59.832 55.000 0.00 0.00 0.00 4.70
33 34 1.296056 AAAAATCCCACGTCGCTCCG 61.296 55.000 0.00 0.00 0.00 4.63
34 35 2.162338 AAAATCCCACGTCGCTCCGA 62.162 55.000 0.00 0.00 0.00 4.55
35 36 2.558554 AAATCCCACGTCGCTCCGAG 62.559 60.000 0.00 0.00 36.23 4.63
36 37 3.989838 ATCCCACGTCGCTCCGAGA 62.990 63.158 0.00 0.00 36.23 4.04
37 38 3.744719 CCCACGTCGCTCCGAGAA 61.745 66.667 0.00 0.00 36.23 2.87
38 39 2.257371 CCACGTCGCTCCGAGAAA 59.743 61.111 0.00 0.00 36.23 2.52
39 40 1.372499 CCACGTCGCTCCGAGAAAA 60.372 57.895 0.00 0.00 36.23 2.29
40 41 1.615107 CCACGTCGCTCCGAGAAAAC 61.615 60.000 0.00 0.00 36.23 2.43
41 42 0.937699 CACGTCGCTCCGAGAAAACA 60.938 55.000 0.00 0.00 36.23 2.83
42 43 0.663568 ACGTCGCTCCGAGAAAACAG 60.664 55.000 0.00 0.00 36.23 3.16
43 44 1.782181 GTCGCTCCGAGAAAACAGC 59.218 57.895 0.00 0.00 36.23 4.40
44 45 1.374252 TCGCTCCGAGAAAACAGCC 60.374 57.895 0.00 0.00 0.00 4.85
45 46 1.667830 CGCTCCGAGAAAACAGCCA 60.668 57.895 0.00 0.00 0.00 4.75
46 47 1.869690 GCTCCGAGAAAACAGCCAC 59.130 57.895 0.00 0.00 0.00 5.01
47 48 1.578206 GCTCCGAGAAAACAGCCACC 61.578 60.000 0.00 0.00 0.00 4.61
48 49 0.035458 CTCCGAGAAAACAGCCACCT 59.965 55.000 0.00 0.00 0.00 4.00
49 50 0.034896 TCCGAGAAAACAGCCACCTC 59.965 55.000 0.00 0.00 0.00 3.85
50 51 0.955919 CCGAGAAAACAGCCACCTCC 60.956 60.000 0.00 0.00 0.00 4.30
51 52 1.291877 CGAGAAAACAGCCACCTCCG 61.292 60.000 0.00 0.00 0.00 4.63
52 53 0.955919 GAGAAAACAGCCACCTCCGG 60.956 60.000 0.00 0.00 0.00 5.14
53 54 1.228154 GAAAACAGCCACCTCCGGT 60.228 57.895 0.00 0.00 35.62 5.28
54 55 0.035739 GAAAACAGCCACCTCCGGTA 59.964 55.000 0.00 0.00 32.11 4.02
55 56 0.250597 AAAACAGCCACCTCCGGTAC 60.251 55.000 0.00 0.00 32.11 3.34
56 57 1.412453 AAACAGCCACCTCCGGTACA 61.412 55.000 0.00 0.00 32.11 2.90
57 58 1.412453 AACAGCCACCTCCGGTACAA 61.412 55.000 0.00 0.00 32.11 2.41
58 59 1.375523 CAGCCACCTCCGGTACAAC 60.376 63.158 0.00 0.00 32.11 3.32
59 60 1.535687 AGCCACCTCCGGTACAACT 60.536 57.895 0.00 0.00 32.11 3.16
60 61 0.251922 AGCCACCTCCGGTACAACTA 60.252 55.000 0.00 0.00 32.11 2.24
61 62 0.609662 GCCACCTCCGGTACAACTAA 59.390 55.000 0.00 0.00 32.11 2.24
62 63 1.002315 GCCACCTCCGGTACAACTAAA 59.998 52.381 0.00 0.00 32.11 1.85
63 64 2.550639 GCCACCTCCGGTACAACTAAAA 60.551 50.000 0.00 0.00 32.11 1.52
64 65 3.069289 CCACCTCCGGTACAACTAAAAC 58.931 50.000 0.00 0.00 32.11 2.43
65 66 3.069289 CACCTCCGGTACAACTAAAACC 58.931 50.000 0.00 0.00 32.11 3.27
72 73 3.328505 GGTACAACTAAAACCGCTAGCA 58.671 45.455 16.45 0.00 0.00 3.49
73 74 3.747529 GGTACAACTAAAACCGCTAGCAA 59.252 43.478 16.45 0.00 0.00 3.91
74 75 4.213906 GGTACAACTAAAACCGCTAGCAAA 59.786 41.667 16.45 0.00 0.00 3.68
75 76 4.904253 ACAACTAAAACCGCTAGCAAAA 57.096 36.364 16.45 0.00 0.00 2.44
76 77 5.251601 ACAACTAAAACCGCTAGCAAAAA 57.748 34.783 16.45 0.00 0.00 1.94
77 78 5.038683 ACAACTAAAACCGCTAGCAAAAAC 58.961 37.500 16.45 0.00 0.00 2.43
78 79 4.904253 ACTAAAACCGCTAGCAAAAACA 57.096 36.364 16.45 0.00 0.00 2.83
79 80 5.447624 ACTAAAACCGCTAGCAAAAACAT 57.552 34.783 16.45 0.00 0.00 2.71
80 81 5.838529 ACTAAAACCGCTAGCAAAAACATT 58.161 33.333 16.45 2.73 0.00 2.71
81 82 6.277605 ACTAAAACCGCTAGCAAAAACATTT 58.722 32.000 16.45 7.95 0.00 2.32
82 83 5.402464 AAAACCGCTAGCAAAAACATTTG 57.598 34.783 16.45 0.00 35.15 2.32
83 84 4.314740 AACCGCTAGCAAAAACATTTGA 57.685 36.364 16.45 0.00 33.95 2.69
84 85 4.314740 ACCGCTAGCAAAAACATTTGAA 57.685 36.364 16.45 0.00 33.95 2.69
85 86 4.688021 ACCGCTAGCAAAAACATTTGAAA 58.312 34.783 16.45 0.00 33.95 2.69
86 87 5.296748 ACCGCTAGCAAAAACATTTGAAAT 58.703 33.333 16.45 0.00 33.95 2.17
87 88 5.177327 ACCGCTAGCAAAAACATTTGAAATG 59.823 36.000 16.45 15.82 33.95 2.32
88 89 5.074791 CGCTAGCAAAAACATTTGAAATGC 58.925 37.500 17.19 4.40 33.95 3.56
89 90 5.384787 GCTAGCAAAAACATTTGAAATGCC 58.615 37.500 17.19 0.63 33.95 4.40
90 91 5.049543 GCTAGCAAAAACATTTGAAATGCCA 60.050 36.000 17.19 0.00 33.95 4.92
91 92 6.348704 GCTAGCAAAAACATTTGAAATGCCAT 60.349 34.615 17.19 2.09 33.95 4.40
92 93 5.764131 AGCAAAAACATTTGAAATGCCATG 58.236 33.333 17.19 12.01 33.95 3.66
93 94 4.383351 GCAAAAACATTTGAAATGCCATGC 59.617 37.500 17.19 16.95 33.95 4.06
94 95 5.764131 CAAAAACATTTGAAATGCCATGCT 58.236 33.333 17.19 0.00 33.95 3.79
95 96 5.616488 AAAACATTTGAAATGCCATGCTC 57.384 34.783 17.19 0.00 0.00 4.26
96 97 4.546829 AACATTTGAAATGCCATGCTCT 57.453 36.364 17.19 0.00 0.00 4.09
97 98 4.119442 ACATTTGAAATGCCATGCTCTC 57.881 40.909 17.19 0.00 0.00 3.20
98 99 3.118884 ACATTTGAAATGCCATGCTCTCC 60.119 43.478 17.19 0.00 0.00 3.71
99 100 1.477553 TTGAAATGCCATGCTCTCCC 58.522 50.000 0.00 0.00 0.00 4.30
100 101 0.332293 TGAAATGCCATGCTCTCCCA 59.668 50.000 0.00 0.00 0.00 4.37
101 102 1.272592 TGAAATGCCATGCTCTCCCAA 60.273 47.619 0.00 0.00 0.00 4.12
102 103 1.135721 GAAATGCCATGCTCTCCCAAC 59.864 52.381 0.00 0.00 0.00 3.77
103 104 1.033746 AATGCCATGCTCTCCCAACG 61.034 55.000 0.00 0.00 0.00 4.10
104 105 1.913951 ATGCCATGCTCTCCCAACGA 61.914 55.000 0.00 0.00 0.00 3.85
105 106 1.377202 GCCATGCTCTCCCAACGAA 60.377 57.895 0.00 0.00 0.00 3.85
106 107 1.648467 GCCATGCTCTCCCAACGAAC 61.648 60.000 0.00 0.00 0.00 3.95
107 108 1.361668 CCATGCTCTCCCAACGAACG 61.362 60.000 0.00 0.00 0.00 3.95
108 109 0.670546 CATGCTCTCCCAACGAACGT 60.671 55.000 0.00 0.00 0.00 3.99
115 116 1.890041 CCCAACGAACGTCAGCCAA 60.890 57.895 0.00 0.00 0.00 4.52
126 127 5.163854 CGAACGTCAGCCAAATAAGATTTCT 60.164 40.000 0.00 0.00 0.00 2.52
127 128 5.551760 ACGTCAGCCAAATAAGATTTCTG 57.448 39.130 0.00 0.00 0.00 3.02
129 130 5.705441 ACGTCAGCCAAATAAGATTTCTGAA 59.295 36.000 5.41 0.00 31.89 3.02
130 131 6.206634 ACGTCAGCCAAATAAGATTTCTGAAA 59.793 34.615 5.15 5.15 31.89 2.69
131 132 7.083858 CGTCAGCCAAATAAGATTTCTGAAAA 58.916 34.615 6.95 0.00 31.89 2.29
160 161 0.310543 TCACATGAACTTTGCCGTGC 59.689 50.000 0.00 0.00 0.00 5.34
172 173 1.372499 GCCGTGCGACAGACTTGTA 60.372 57.895 0.00 0.00 37.76 2.41
175 176 0.776451 CGTGCGACAGACTTGTACAC 59.224 55.000 0.00 4.22 39.39 2.90
180 181 2.668834 GCGACAGACTTGTACACCTCTC 60.669 54.545 0.00 0.00 37.76 3.20
181 182 2.095161 CGACAGACTTGTACACCTCTCC 60.095 54.545 0.00 0.00 37.76 3.71
185 186 0.830444 ACTTGTACACCTCTCCGCCA 60.830 55.000 0.00 0.00 0.00 5.69
191 192 0.251653 ACACCTCTCCGCCAGAAGTA 60.252 55.000 0.00 0.00 0.00 2.24
195 196 1.464734 CTCTCCGCCAGAAGTAGTCA 58.535 55.000 0.00 0.00 0.00 3.41
207 208 4.496183 CAGAAGTAGTCACGCGTTTCTATC 59.504 45.833 18.25 13.90 0.00 2.08
216 218 0.850856 GCGTTTCTATCCGCCTAACG 59.149 55.000 0.00 0.00 43.96 3.18
230 232 2.097791 GCCTAACGAACACACCACAAAA 59.902 45.455 0.00 0.00 0.00 2.44
231 233 3.243267 GCCTAACGAACACACCACAAAAT 60.243 43.478 0.00 0.00 0.00 1.82
233 235 2.748461 ACGAACACACCACAAAATCG 57.252 45.000 0.00 0.00 35.16 3.34
252 255 3.820689 TCGAAAACCGAGATTTTGCATG 58.179 40.909 0.00 0.00 43.23 4.06
270 273 6.432607 TGCATGAATTTTGCAAGAAAACAA 57.567 29.167 12.91 0.00 46.48 2.83
271 274 7.028926 TGCATGAATTTTGCAAGAAAACAAT 57.971 28.000 12.91 0.00 46.48 2.71
272 275 8.151141 TGCATGAATTTTGCAAGAAAACAATA 57.849 26.923 12.91 0.00 46.48 1.90
283 286 8.939201 TGCAAGAAAACAATAAAATTCTGTCA 57.061 26.923 0.00 0.00 32.72 3.58
285 288 7.998212 GCAAGAAAACAATAAAATTCTGTCACG 59.002 33.333 0.00 0.00 32.72 4.35
286 289 9.232082 CAAGAAAACAATAAAATTCTGTCACGA 57.768 29.630 0.00 0.00 32.72 4.35
287 290 9.450807 AAGAAAACAATAAAATTCTGTCACGAG 57.549 29.630 0.00 0.00 32.72 4.18
288 291 8.836413 AGAAAACAATAAAATTCTGTCACGAGA 58.164 29.630 0.00 0.00 31.25 4.04
289 292 9.612620 GAAAACAATAAAATTCTGTCACGAGAT 57.387 29.630 0.00 0.00 0.00 2.75
290 293 9.965824 AAAACAATAAAATTCTGTCACGAGATT 57.034 25.926 0.00 0.00 0.00 2.40
291 294 9.965824 AAACAATAAAATTCTGTCACGAGATTT 57.034 25.926 0.00 0.00 0.00 2.17
292 295 8.955061 ACAATAAAATTCTGTCACGAGATTTG 57.045 30.769 0.00 0.00 0.00 2.32
293 296 8.783093 ACAATAAAATTCTGTCACGAGATTTGA 58.217 29.630 0.00 0.00 0.00 2.69
294 297 9.270576 CAATAAAATTCTGTCACGAGATTTGAG 57.729 33.333 0.00 0.00 0.00 3.02
295 298 8.777865 ATAAAATTCTGTCACGAGATTTGAGA 57.222 30.769 0.00 0.00 0.00 3.27
296 299 7.496529 AAAATTCTGTCACGAGATTTGAGAA 57.503 32.000 0.00 0.00 0.00 2.87
298 301 6.718454 ATTCTGTCACGAGATTTGAGAAAG 57.282 37.500 0.00 0.00 0.00 2.62
346 351 0.320073 AACCGAATTCCGCGAGACAA 60.320 50.000 8.23 0.00 36.84 3.18
347 352 0.108329 ACCGAATTCCGCGAGACAAT 60.108 50.000 8.23 0.00 36.84 2.71
362 367 5.335827 GAGACAATTGCTCGTATGGAATC 57.664 43.478 5.05 0.00 0.00 2.52
366 371 2.325583 TTGCTCGTATGGAATCCCAC 57.674 50.000 0.00 0.00 46.98 4.61
367 372 1.199615 TGCTCGTATGGAATCCCACA 58.800 50.000 0.00 0.00 46.98 4.17
382 387 0.599558 CCACACGGGAGAACGAGTAA 59.400 55.000 0.00 0.00 40.01 2.24
384 389 2.424601 CCACACGGGAGAACGAGTAATA 59.575 50.000 0.00 0.00 40.01 0.98
386 391 2.096496 ACACGGGAGAACGAGTAATACG 59.904 50.000 0.00 0.00 35.97 3.06
493 520 0.396278 CCTTCCATCTTTGCCTCCCC 60.396 60.000 0.00 0.00 0.00 4.81
523 561 0.919289 ATTTCCACCCCACGGATCCT 60.919 55.000 10.75 0.00 30.99 3.24
537 575 0.466124 GATCCTCCAAGAACTCCCCG 59.534 60.000 0.00 0.00 0.00 5.73
538 576 1.627297 ATCCTCCAAGAACTCCCCGC 61.627 60.000 0.00 0.00 0.00 6.13
542 580 4.778143 CAAGAACTCCCCGCCCCG 62.778 72.222 0.00 0.00 0.00 5.73
563 606 1.966451 CCCGCACAGAACCAACTCC 60.966 63.158 0.00 0.00 0.00 3.85
564 607 2.317609 CCGCACAGAACCAACTCCG 61.318 63.158 0.00 0.00 0.00 4.63
565 608 2.946762 GCACAGAACCAACTCCGC 59.053 61.111 0.00 0.00 0.00 5.54
566 609 2.617274 GCACAGAACCAACTCCGCC 61.617 63.158 0.00 0.00 0.00 6.13
567 610 2.030562 ACAGAACCAACTCCGCCG 59.969 61.111 0.00 0.00 0.00 6.46
568 611 3.423154 CAGAACCAACTCCGCCGC 61.423 66.667 0.00 0.00 0.00 6.53
569 612 4.699522 AGAACCAACTCCGCCGCC 62.700 66.667 0.00 0.00 0.00 6.13
573 616 4.473520 CCAACTCCGCCGCCAGAT 62.474 66.667 0.00 0.00 0.00 2.90
574 617 2.892425 CAACTCCGCCGCCAGATC 60.892 66.667 0.00 0.00 0.00 2.75
575 618 3.390521 AACTCCGCCGCCAGATCA 61.391 61.111 0.00 0.00 0.00 2.92
576 619 2.954684 AACTCCGCCGCCAGATCAA 61.955 57.895 0.00 0.00 0.00 2.57
577 620 2.892425 CTCCGCCGCCAGATCAAC 60.892 66.667 0.00 0.00 0.00 3.18
705 751 1.075600 CAGGACCCTCCTCCTCCTC 60.076 68.421 0.00 0.00 45.66 3.71
706 752 2.284151 GGACCCTCCTCCTCCTCC 59.716 72.222 0.00 0.00 32.53 4.30
725 771 1.507919 CGCGCTCAAAGCTCGTTTC 60.508 57.895 5.56 0.00 43.62 2.78
726 772 1.862806 GCGCTCAAAGCTCGTTTCT 59.137 52.632 0.00 0.00 39.60 2.52
727 773 0.235926 GCGCTCAAAGCTCGTTTCTT 59.764 50.000 0.00 0.00 39.60 2.52
728 774 1.334149 GCGCTCAAAGCTCGTTTCTTT 60.334 47.619 0.00 0.00 39.60 2.52
729 775 2.854805 GCGCTCAAAGCTCGTTTCTTTT 60.855 45.455 0.00 0.00 39.60 2.27
730 776 2.967357 CGCTCAAAGCTCGTTTCTTTTC 59.033 45.455 0.00 0.00 39.60 2.29
741 789 5.744666 TCGTTTCTTTTCTTGGTTACTGG 57.255 39.130 0.00 0.00 0.00 4.00
760 808 1.128692 GGTTGCGATCTCGTTTCTTGG 59.871 52.381 1.14 0.00 42.22 3.61
795 843 0.459585 TGCTAATCTCGCCGTGTTCC 60.460 55.000 0.00 0.00 0.00 3.62
831 879 2.029307 ATTCCTCTCCGCGTTAGGGC 62.029 60.000 15.93 0.00 0.00 5.19
840 888 1.227060 GCGTTAGGGCGTCCGTTAT 60.227 57.895 0.00 0.00 38.33 1.89
841 889 0.807275 GCGTTAGGGCGTCCGTTATT 60.807 55.000 0.00 0.00 38.33 1.40
842 890 0.925466 CGTTAGGGCGTCCGTTATTG 59.075 55.000 0.00 0.00 38.33 1.90
843 891 0.654160 GTTAGGGCGTCCGTTATTGC 59.346 55.000 0.00 0.00 38.33 3.56
844 892 0.538118 TTAGGGCGTCCGTTATTGCT 59.462 50.000 0.00 0.00 38.33 3.91
845 893 0.538118 TAGGGCGTCCGTTATTGCTT 59.462 50.000 0.00 0.00 38.33 3.91
846 894 0.322187 AGGGCGTCCGTTATTGCTTT 60.322 50.000 0.00 0.00 38.33 3.51
847 895 0.098200 GGGCGTCCGTTATTGCTTTC 59.902 55.000 0.00 0.00 0.00 2.62
848 896 0.098200 GGCGTCCGTTATTGCTTTCC 59.902 55.000 0.00 0.00 0.00 3.13
849 897 0.247537 GCGTCCGTTATTGCTTTCCG 60.248 55.000 0.00 0.00 0.00 4.30
850 898 0.372334 CGTCCGTTATTGCTTTCCGG 59.628 55.000 0.00 0.00 39.98 5.14
851 899 1.445871 GTCCGTTATTGCTTTCCGGT 58.554 50.000 0.00 0.00 39.62 5.28
872 921 4.276431 GGTCCGAGTTGATTTGGTTTGTTA 59.724 41.667 0.00 0.00 0.00 2.41
873 922 5.048294 GGTCCGAGTTGATTTGGTTTGTTAT 60.048 40.000 0.00 0.00 0.00 1.89
914 967 0.461339 TCCGTTGCTCGATTTAGGGC 60.461 55.000 3.69 0.00 42.86 5.19
920 973 3.454371 TGCTCGATTTAGGGCTACTTC 57.546 47.619 0.00 0.00 38.71 3.01
925 978 2.210961 GATTTAGGGCTACTTCCGTGC 58.789 52.381 0.00 0.00 0.00 5.34
926 979 1.272807 TTTAGGGCTACTTCCGTGCT 58.727 50.000 0.00 0.00 0.00 4.40
952 1005 1.400142 CCGGTTCGAATTGCATTGCTA 59.600 47.619 10.49 2.21 0.00 3.49
991 1055 1.600485 CTACCGCCGTTTCTTGTTTGT 59.400 47.619 0.00 0.00 0.00 2.83
1276 1353 0.605319 TGAACGGGTGTGAATCTGCC 60.605 55.000 0.00 0.00 0.00 4.85
1448 1531 1.506493 CGAGAAGCTGCTCAACAACT 58.494 50.000 21.96 0.00 34.56 3.16
1660 1751 8.892723 GTGGTGATGATTACTGATTTGATGTAA 58.107 33.333 0.00 0.00 0.00 2.41
2169 2774 1.490490 GTGAGGATTAGGGACCATGCA 59.510 52.381 0.00 0.00 0.00 3.96
2172 2777 2.173569 GAGGATTAGGGACCATGCAGTT 59.826 50.000 0.00 0.00 0.00 3.16
2523 3128 3.385577 GAACAAGAACGACAGAGAGCTT 58.614 45.455 0.00 0.00 0.00 3.74
2556 3161 3.173151 TGGATTCACTCAGAACCAGCTA 58.827 45.455 0.00 0.00 39.49 3.32
2559 3164 2.724977 TCACTCAGAACCAGCTAACG 57.275 50.000 0.00 0.00 0.00 3.18
2802 3624 1.333791 CGCTTCTGGAACGTGTTTTCC 60.334 52.381 0.00 0.00 44.86 3.13
2820 3642 2.202676 GAGGCTCCGAAGTCTGCG 60.203 66.667 2.15 0.00 37.67 5.18
2877 3699 3.446161 ACAGCTACAATCACCTACGCTAA 59.554 43.478 0.00 0.00 0.00 3.09
2911 3736 3.062763 CAGCAACTGGTGTAACTCTGAG 58.937 50.000 2.45 2.45 38.61 3.35
2920 3745 6.207810 ACTGGTGTAACTCTGAGAAGAAGTAG 59.792 42.308 12.44 4.92 36.74 2.57
2922 3747 5.047943 GGTGTAACTCTGAGAAGAAGTAGCA 60.048 44.000 12.44 0.00 36.74 3.49
2923 3748 6.090129 GTGTAACTCTGAGAAGAAGTAGCAG 58.910 44.000 12.44 0.00 0.00 4.24
2924 3749 4.799564 AACTCTGAGAAGAAGTAGCAGG 57.200 45.455 12.44 0.00 0.00 4.85
2925 3750 2.495669 ACTCTGAGAAGAAGTAGCAGGC 59.504 50.000 12.44 0.00 0.00 4.85
2926 3751 2.760092 CTCTGAGAAGAAGTAGCAGGCT 59.240 50.000 0.00 0.00 0.00 4.58
2927 3752 3.951037 CTCTGAGAAGAAGTAGCAGGCTA 59.049 47.826 0.00 0.00 0.00 3.93
2928 3753 3.951037 TCTGAGAAGAAGTAGCAGGCTAG 59.049 47.826 0.32 0.00 0.00 3.42
2929 3754 3.027412 TGAGAAGAAGTAGCAGGCTAGG 58.973 50.000 0.32 0.00 0.00 3.02
2931 3756 0.461961 AAGAAGTAGCAGGCTAGGCG 59.538 55.000 11.10 7.19 36.08 5.52
2932 3757 1.592939 GAAGTAGCAGGCTAGGCGC 60.593 63.158 20.05 20.05 36.08 6.53
2934 3759 1.899437 AAGTAGCAGGCTAGGCGCAA 61.899 55.000 26.01 7.51 41.67 4.85
2935 3760 1.449601 GTAGCAGGCTAGGCGCAAA 60.450 57.895 26.01 15.59 41.67 3.68
2936 3761 1.153369 TAGCAGGCTAGGCGCAAAG 60.153 57.895 26.01 6.82 41.67 2.77
2937 3762 1.613317 TAGCAGGCTAGGCGCAAAGA 61.613 55.000 26.01 11.81 41.67 2.52
2938 3763 2.467826 GCAGGCTAGGCGCAAAGAG 61.468 63.158 21.80 0.68 41.67 2.85
2939 3764 1.078848 CAGGCTAGGCGCAAAGAGT 60.079 57.895 10.83 0.00 41.67 3.24
2943 3768 1.405661 GGCTAGGCGCAAAGAGTAACT 60.406 52.381 10.83 0.00 41.67 2.24
2945 3770 1.661112 CTAGGCGCAAAGAGTAACTGC 59.339 52.381 10.83 0.00 0.00 4.40
2946 3771 0.250295 AGGCGCAAAGAGTAACTGCA 60.250 50.000 10.83 0.00 35.78 4.41
2947 3772 0.804989 GGCGCAAAGAGTAACTGCAT 59.195 50.000 10.83 0.00 35.78 3.96
2948 3773 1.202076 GGCGCAAAGAGTAACTGCATC 60.202 52.381 10.83 0.00 35.78 3.91
2949 3774 1.464608 GCGCAAAGAGTAACTGCATCA 59.535 47.619 0.30 0.00 35.78 3.07
2950 3775 2.096496 GCGCAAAGAGTAACTGCATCAT 59.904 45.455 0.30 0.00 35.78 2.45
2951 3776 3.677601 CGCAAAGAGTAACTGCATCATG 58.322 45.455 0.00 0.00 35.78 3.07
2952 3777 3.371898 CGCAAAGAGTAACTGCATCATGA 59.628 43.478 0.00 0.00 35.78 3.07
3113 3944 7.403671 TGTCAGTGATATATAGTACTCCCTCC 58.596 42.308 0.00 0.00 0.00 4.30
3121 3952 1.229131 AGTACTCCCTCCGACCCATA 58.771 55.000 0.00 0.00 0.00 2.74
3122 3953 1.133544 AGTACTCCCTCCGACCCATAC 60.134 57.143 0.00 0.00 0.00 2.39
3193 4130 6.591062 TGAAGCTGCAACAATTAATTTGGATC 59.409 34.615 1.02 0.00 39.80 3.36
3195 4132 5.101628 GCTGCAACAATTAATTTGGATCGA 58.898 37.500 0.00 0.00 39.80 3.59
3205 4142 9.502091 CAATTAATTTGGATCGAAGGGAGTATA 57.498 33.333 0.00 0.00 0.00 1.47
3215 4153 9.945904 GGATCGAAGGGAGTATATATTTTTCTT 57.054 33.333 0.00 0.00 0.00 2.52
3241 4179 4.100707 ACAATGCATGGTCTCAAAATCG 57.899 40.909 0.00 0.00 0.00 3.34
3249 4187 1.136336 GGTCTCAAAATCGTGTGTCGC 60.136 52.381 0.00 0.00 39.67 5.19
3260 4198 2.159558 TCGTGTGTCGCTTGAGAGTATC 60.160 50.000 0.00 0.00 39.67 2.24
3261 4199 4.420639 TCGTGTGTCGCTTGAGAGTATCT 61.421 47.826 0.00 0.00 44.44 1.98
3309 4251 4.681744 TGTTGCTTTTGATGTTTCCTGTC 58.318 39.130 0.00 0.00 0.00 3.51
3315 4259 3.469008 TTGATGTTTCCTGTCGACTGT 57.531 42.857 17.92 0.00 0.00 3.55
3392 4346 1.827789 GCAACCTGAAGCCACCACA 60.828 57.895 0.00 0.00 0.00 4.17
3393 4347 2.032981 CAACCTGAAGCCACCACAC 58.967 57.895 0.00 0.00 0.00 3.82
3412 4366 7.122055 CACCACACCACTATTTTACCATGTTAT 59.878 37.037 0.00 0.00 0.00 1.89
3413 4367 7.672239 ACCACACCACTATTTTACCATGTTATT 59.328 33.333 0.00 0.00 0.00 1.40
3414 4368 8.188139 CCACACCACTATTTTACCATGTTATTC 58.812 37.037 0.00 0.00 0.00 1.75
3446 4403 3.462021 GTCATACATGGACCTGCTTCTC 58.538 50.000 0.00 0.00 0.00 2.87
3447 4404 3.133721 GTCATACATGGACCTGCTTCTCT 59.866 47.826 0.00 0.00 0.00 3.10
3464 4421 1.538512 CTCTGCAATGGAACCTGTGTG 59.461 52.381 0.00 0.00 0.00 3.82
3484 4441 2.567169 TGTGTACTCCCACTGAATCCAG 59.433 50.000 0.00 0.00 45.76 3.86
3505 4462 2.424956 GACCTAGCAAAATTGGAGCAGG 59.575 50.000 0.00 0.00 34.73 4.85
3542 4499 2.763933 AGATGTGTGTGTCAGCTTCAG 58.236 47.619 0.00 0.00 0.00 3.02
3554 4511 2.027745 TCAGCTTCAGATGTTGGAGGAC 60.028 50.000 1.03 0.00 32.52 3.85
3558 4515 0.615331 TCAGATGTTGGAGGACCTGC 59.385 55.000 5.96 5.96 37.04 4.85
3559 4516 0.617413 CAGATGTTGGAGGACCTGCT 59.383 55.000 14.77 0.00 37.04 4.24
3560 4517 0.617413 AGATGTTGGAGGACCTGCTG 59.383 55.000 14.77 0.00 37.04 4.41
3561 4518 0.326264 GATGTTGGAGGACCTGCTGT 59.674 55.000 14.77 0.00 37.04 4.40
3562 4519 0.326264 ATGTTGGAGGACCTGCTGTC 59.674 55.000 14.77 5.31 43.67 3.51
3563 4520 0.764369 TGTTGGAGGACCTGCTGTCT 60.764 55.000 14.77 0.00 43.89 3.41
3564 4521 0.398318 GTTGGAGGACCTGCTGTCTT 59.602 55.000 14.77 0.00 43.89 3.01
3565 4522 0.397941 TTGGAGGACCTGCTGTCTTG 59.602 55.000 14.77 0.00 43.89 3.02
3566 4523 0.764369 TGGAGGACCTGCTGTCTTGT 60.764 55.000 14.77 0.00 43.89 3.16
3567 4524 0.321122 GGAGGACCTGCTGTCTTGTG 60.321 60.000 5.61 0.00 43.89 3.33
3568 4525 0.952984 GAGGACCTGCTGTCTTGTGC 60.953 60.000 0.00 0.00 43.89 4.57
3569 4526 1.968540 GGACCTGCTGTCTTGTGCC 60.969 63.158 6.86 0.00 43.89 5.01
3570 4527 1.227943 GACCTGCTGTCTTGTGCCA 60.228 57.895 0.40 0.00 41.03 4.92
3571 4528 0.819259 GACCTGCTGTCTTGTGCCAA 60.819 55.000 0.40 0.00 41.03 4.52
3572 4529 0.820891 ACCTGCTGTCTTGTGCCAAG 60.821 55.000 8.22 8.22 0.00 3.61
3573 4530 1.285023 CTGCTGTCTTGTGCCAAGC 59.715 57.895 9.35 6.35 0.00 4.01
3574 4531 1.152902 TGCTGTCTTGTGCCAAGCT 60.153 52.632 9.35 0.00 0.00 3.74
3575 4532 1.285023 GCTGTCTTGTGCCAAGCTG 59.715 57.895 9.35 9.41 0.00 4.24
3576 4533 1.168407 GCTGTCTTGTGCCAAGCTGA 61.168 55.000 9.35 0.00 0.00 4.26
3577 4534 1.311859 CTGTCTTGTGCCAAGCTGAA 58.688 50.000 9.35 0.00 0.00 3.02
3578 4535 1.266175 CTGTCTTGTGCCAAGCTGAAG 59.734 52.381 9.35 0.00 0.00 3.02
3579 4536 0.039708 GTCTTGTGCCAAGCTGAAGC 60.040 55.000 9.35 0.00 42.49 3.86
3580 4537 1.174712 TCTTGTGCCAAGCTGAAGCC 61.175 55.000 9.35 0.00 43.38 4.35
3581 4538 1.455402 TTGTGCCAAGCTGAAGCCA 60.455 52.632 0.00 0.00 43.38 4.75
3582 4539 1.042003 TTGTGCCAAGCTGAAGCCAA 61.042 50.000 0.00 0.00 43.38 4.52
3583 4540 1.042003 TGTGCCAAGCTGAAGCCAAA 61.042 50.000 0.00 0.00 43.38 3.28
3584 4541 0.319297 GTGCCAAGCTGAAGCCAAAG 60.319 55.000 0.00 0.00 43.38 2.77
3585 4542 0.467844 TGCCAAGCTGAAGCCAAAGA 60.468 50.000 0.00 0.00 43.38 2.52
3586 4543 0.675633 GCCAAGCTGAAGCCAAAGAA 59.324 50.000 0.00 0.00 43.38 2.52
3587 4544 1.069049 GCCAAGCTGAAGCCAAAGAAA 59.931 47.619 0.00 0.00 43.38 2.52
3588 4545 2.289257 GCCAAGCTGAAGCCAAAGAAAT 60.289 45.455 0.00 0.00 43.38 2.17
3616 4573 5.185056 GCAAACCATATGTTTACCCTCTTGT 59.815 40.000 1.24 0.00 45.35 3.16
3617 4574 6.295067 GCAAACCATATGTTTACCCTCTTGTT 60.295 38.462 1.24 0.00 45.35 2.83
3621 4578 6.884836 ACCATATGTTTACCCTCTTGTTCTTC 59.115 38.462 1.24 0.00 0.00 2.87
3708 4674 2.159517 GCCGATCAGATCACAACCAAAC 60.160 50.000 11.12 0.00 0.00 2.93
3709 4675 3.073678 CCGATCAGATCACAACCAAACA 58.926 45.455 11.12 0.00 0.00 2.83
3710 4676 3.501828 CCGATCAGATCACAACCAAACAA 59.498 43.478 11.12 0.00 0.00 2.83
3711 4677 4.378770 CCGATCAGATCACAACCAAACAAG 60.379 45.833 11.12 0.00 0.00 3.16
3751 4717 1.901591 CAGCGCCTTAATCCCATGAT 58.098 50.000 2.29 0.00 0.00 2.45
3752 4718 1.538512 CAGCGCCTTAATCCCATGATG 59.461 52.381 2.29 0.00 0.00 3.07
3753 4719 1.421268 AGCGCCTTAATCCCATGATGA 59.579 47.619 2.29 0.00 0.00 2.92
3782 4748 7.839680 ACCAGTGAAATTTACCATTTCTTCT 57.160 32.000 8.40 4.98 38.47 2.85
3783 4749 8.250143 ACCAGTGAAATTTACCATTTCTTCTT 57.750 30.769 8.40 0.00 38.47 2.52
3785 4751 8.359642 CCAGTGAAATTTACCATTTCTTCTTCA 58.640 33.333 8.40 0.00 38.47 3.02
3786 4752 9.748708 CAGTGAAATTTACCATTTCTTCTTCAA 57.251 29.630 8.40 0.00 38.47 2.69
3787 4753 9.750125 AGTGAAATTTACCATTTCTTCTTCAAC 57.250 29.630 8.40 0.00 38.47 3.18
3788 4754 8.978539 GTGAAATTTACCATTTCTTCTTCAACC 58.021 33.333 8.40 0.00 38.47 3.77
3789 4755 8.700051 TGAAATTTACCATTTCTTCTTCAACCA 58.300 29.630 8.40 0.00 38.47 3.67
3800 4767 4.272504 TCTTCTTCAACCAAAAGTAGCACG 59.727 41.667 0.00 0.00 0.00 5.34
3811 4778 6.711645 ACCAAAAGTAGCACGGTAAAAGATTA 59.288 34.615 0.00 0.00 0.00 1.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.641192 GGATTTTTGGGGAGGAGGACT 59.359 52.381 0.00 0.00 0.00 3.85
4 5 0.709992 TGGGATTTTTGGGGAGGAGG 59.290 55.000 0.00 0.00 0.00 4.30
5 6 1.852633 GTGGGATTTTTGGGGAGGAG 58.147 55.000 0.00 0.00 0.00 3.69
7 8 0.251608 ACGTGGGATTTTTGGGGAGG 60.252 55.000 0.00 0.00 0.00 4.30
9 10 0.606944 CGACGTGGGATTTTTGGGGA 60.607 55.000 0.00 0.00 0.00 4.81
10 11 1.880186 CGACGTGGGATTTTTGGGG 59.120 57.895 0.00 0.00 0.00 4.96
11 12 1.211709 GCGACGTGGGATTTTTGGG 59.788 57.895 0.00 0.00 0.00 4.12
12 13 0.168128 GAGCGACGTGGGATTTTTGG 59.832 55.000 0.00 0.00 0.00 3.28
13 14 0.168128 GGAGCGACGTGGGATTTTTG 59.832 55.000 0.00 0.00 0.00 2.44
14 15 1.296056 CGGAGCGACGTGGGATTTTT 61.296 55.000 0.00 0.00 0.00 1.94
15 16 1.740296 CGGAGCGACGTGGGATTTT 60.740 57.895 0.00 0.00 0.00 1.82
16 17 2.125673 CGGAGCGACGTGGGATTT 60.126 61.111 0.00 0.00 0.00 2.17
17 18 3.064987 CTCGGAGCGACGTGGGATT 62.065 63.158 0.00 0.00 34.94 3.01
18 19 3.518998 CTCGGAGCGACGTGGGAT 61.519 66.667 0.00 0.00 34.94 3.85
19 20 4.710167 TCTCGGAGCGACGTGGGA 62.710 66.667 0.00 0.00 34.94 4.37
20 21 2.758770 TTTTCTCGGAGCGACGTGGG 62.759 60.000 0.00 0.00 34.94 4.61
21 22 1.372499 TTTTCTCGGAGCGACGTGG 60.372 57.895 0.00 0.00 34.94 4.94
22 23 0.937699 TGTTTTCTCGGAGCGACGTG 60.938 55.000 0.00 1.44 34.94 4.49
23 24 0.663568 CTGTTTTCTCGGAGCGACGT 60.664 55.000 0.00 0.00 34.94 4.34
24 25 1.945776 GCTGTTTTCTCGGAGCGACG 61.946 60.000 0.00 0.00 0.00 5.12
25 26 1.627550 GGCTGTTTTCTCGGAGCGAC 61.628 60.000 0.00 0.00 31.89 5.19
26 27 1.374252 GGCTGTTTTCTCGGAGCGA 60.374 57.895 0.00 0.00 31.89 4.93
27 28 1.667830 TGGCTGTTTTCTCGGAGCG 60.668 57.895 0.00 0.00 31.89 5.03
28 29 1.578206 GGTGGCTGTTTTCTCGGAGC 61.578 60.000 0.00 0.00 0.00 4.70
29 30 0.035458 AGGTGGCTGTTTTCTCGGAG 59.965 55.000 0.00 0.00 0.00 4.63
30 31 0.034896 GAGGTGGCTGTTTTCTCGGA 59.965 55.000 0.00 0.00 0.00 4.55
31 32 0.955919 GGAGGTGGCTGTTTTCTCGG 60.956 60.000 0.00 0.00 0.00 4.63
32 33 1.291877 CGGAGGTGGCTGTTTTCTCG 61.292 60.000 0.00 0.00 0.00 4.04
33 34 2.544726 CGGAGGTGGCTGTTTTCTC 58.455 57.895 0.00 0.00 0.00 2.87
34 35 4.800554 CGGAGGTGGCTGTTTTCT 57.199 55.556 0.00 0.00 0.00 2.52
51 52 3.328505 TGCTAGCGGTTTTAGTTGTACC 58.671 45.455 10.77 0.00 0.00 3.34
52 53 4.996062 TTGCTAGCGGTTTTAGTTGTAC 57.004 40.909 10.77 0.00 0.00 2.90
53 54 6.183360 TGTTTTTGCTAGCGGTTTTAGTTGTA 60.183 34.615 10.77 0.00 0.00 2.41
54 55 4.904253 TTTTGCTAGCGGTTTTAGTTGT 57.096 36.364 10.77 0.00 0.00 3.32
55 56 5.038033 TGTTTTTGCTAGCGGTTTTAGTTG 58.962 37.500 10.77 0.00 0.00 3.16
56 57 5.251601 TGTTTTTGCTAGCGGTTTTAGTT 57.748 34.783 10.77 0.00 0.00 2.24
57 58 4.904253 TGTTTTTGCTAGCGGTTTTAGT 57.096 36.364 10.77 0.00 0.00 2.24
58 59 6.419413 TCAAATGTTTTTGCTAGCGGTTTTAG 59.581 34.615 10.77 0.00 41.66 1.85
59 60 6.273825 TCAAATGTTTTTGCTAGCGGTTTTA 58.726 32.000 10.77 0.00 41.66 1.52
60 61 5.112686 TCAAATGTTTTTGCTAGCGGTTTT 58.887 33.333 10.77 0.52 41.66 2.43
61 62 4.688021 TCAAATGTTTTTGCTAGCGGTTT 58.312 34.783 10.77 0.68 41.66 3.27
62 63 4.314740 TCAAATGTTTTTGCTAGCGGTT 57.685 36.364 10.77 0.00 41.66 4.44
63 64 4.314740 TTCAAATGTTTTTGCTAGCGGT 57.685 36.364 10.77 0.00 41.66 5.68
64 65 5.610975 CATTTCAAATGTTTTTGCTAGCGG 58.389 37.500 10.77 0.00 41.66 5.52
65 66 5.074791 GCATTTCAAATGTTTTTGCTAGCG 58.925 37.500 11.80 0.00 41.66 4.26
66 67 5.049543 TGGCATTTCAAATGTTTTTGCTAGC 60.050 36.000 11.80 8.10 41.66 3.42
67 68 6.542574 TGGCATTTCAAATGTTTTTGCTAG 57.457 33.333 11.80 0.00 41.66 3.42
68 69 6.568081 GCATGGCATTTCAAATGTTTTTGCTA 60.568 34.615 11.80 0.00 41.66 3.49
69 70 5.764131 CATGGCATTTCAAATGTTTTTGCT 58.236 33.333 11.80 0.00 41.66 3.91
70 71 4.383351 GCATGGCATTTCAAATGTTTTTGC 59.617 37.500 11.80 11.44 41.66 3.68
71 72 5.764131 AGCATGGCATTTCAAATGTTTTTG 58.236 33.333 11.80 6.16 42.98 2.44
72 73 5.766174 AGAGCATGGCATTTCAAATGTTTTT 59.234 32.000 11.80 0.00 0.00 1.94
73 74 5.310451 AGAGCATGGCATTTCAAATGTTTT 58.690 33.333 11.80 0.00 0.00 2.43
74 75 4.901868 AGAGCATGGCATTTCAAATGTTT 58.098 34.783 11.80 0.00 0.00 2.83
75 76 4.501071 GAGAGCATGGCATTTCAAATGTT 58.499 39.130 11.80 0.00 0.00 2.71
76 77 3.118884 GGAGAGCATGGCATTTCAAATGT 60.119 43.478 11.80 0.00 0.00 2.71
77 78 3.454375 GGAGAGCATGGCATTTCAAATG 58.546 45.455 5.68 5.68 0.00 2.32
78 79 2.433239 GGGAGAGCATGGCATTTCAAAT 59.567 45.455 0.00 0.00 0.00 2.32
79 80 1.826720 GGGAGAGCATGGCATTTCAAA 59.173 47.619 0.00 0.00 0.00 2.69
80 81 1.272592 TGGGAGAGCATGGCATTTCAA 60.273 47.619 0.00 0.00 0.00 2.69
81 82 0.332293 TGGGAGAGCATGGCATTTCA 59.668 50.000 0.00 0.00 0.00 2.69
82 83 1.135721 GTTGGGAGAGCATGGCATTTC 59.864 52.381 0.00 0.00 0.00 2.17
83 84 1.188863 GTTGGGAGAGCATGGCATTT 58.811 50.000 0.00 0.00 0.00 2.32
84 85 1.033746 CGTTGGGAGAGCATGGCATT 61.034 55.000 0.00 0.00 0.00 3.56
85 86 1.452651 CGTTGGGAGAGCATGGCAT 60.453 57.895 0.00 0.00 0.00 4.40
86 87 2.046023 CGTTGGGAGAGCATGGCA 60.046 61.111 0.00 0.00 0.00 4.92
87 88 1.377202 TTCGTTGGGAGAGCATGGC 60.377 57.895 0.00 0.00 0.00 4.40
88 89 1.361668 CGTTCGTTGGGAGAGCATGG 61.362 60.000 0.00 0.00 0.00 3.66
89 90 0.670546 ACGTTCGTTGGGAGAGCATG 60.671 55.000 0.00 0.00 0.00 4.06
90 91 0.389948 GACGTTCGTTGGGAGAGCAT 60.390 55.000 0.00 0.00 0.00 3.79
91 92 1.006571 GACGTTCGTTGGGAGAGCA 60.007 57.895 0.00 0.00 0.00 4.26
92 93 1.006571 TGACGTTCGTTGGGAGAGC 60.007 57.895 0.00 0.00 0.00 4.09
93 94 1.009389 GCTGACGTTCGTTGGGAGAG 61.009 60.000 0.00 0.00 0.00 3.20
94 95 1.006571 GCTGACGTTCGTTGGGAGA 60.007 57.895 0.00 0.00 0.00 3.71
95 96 2.027625 GGCTGACGTTCGTTGGGAG 61.028 63.158 0.00 0.00 0.00 4.30
96 97 2.029964 GGCTGACGTTCGTTGGGA 59.970 61.111 0.00 0.00 0.00 4.37
97 98 1.440938 TTTGGCTGACGTTCGTTGGG 61.441 55.000 0.00 0.00 0.00 4.12
98 99 0.591170 ATTTGGCTGACGTTCGTTGG 59.409 50.000 0.00 0.00 0.00 3.77
99 100 3.185594 TCTTATTTGGCTGACGTTCGTTG 59.814 43.478 0.00 0.00 0.00 4.10
100 101 3.395639 TCTTATTTGGCTGACGTTCGTT 58.604 40.909 0.00 0.00 0.00 3.85
101 102 3.034721 TCTTATTTGGCTGACGTTCGT 57.965 42.857 0.00 0.00 0.00 3.85
102 103 4.600012 AATCTTATTTGGCTGACGTTCG 57.400 40.909 0.00 0.00 0.00 3.95
103 104 6.024049 CAGAAATCTTATTTGGCTGACGTTC 58.976 40.000 0.00 0.00 0.00 3.95
104 105 5.705441 TCAGAAATCTTATTTGGCTGACGTT 59.295 36.000 0.00 0.00 0.00 3.99
105 106 5.245531 TCAGAAATCTTATTTGGCTGACGT 58.754 37.500 0.00 0.00 0.00 4.34
106 107 5.801350 TCAGAAATCTTATTTGGCTGACG 57.199 39.130 0.00 0.00 0.00 4.35
107 108 8.816640 TTTTTCAGAAATCTTATTTGGCTGAC 57.183 30.769 0.00 0.00 31.40 3.51
131 132 6.313658 GGCAAAGTTCATGTGAAGTTCTTTTT 59.686 34.615 14.31 0.00 44.39 1.94
137 138 2.687935 ACGGCAAAGTTCATGTGAAGTT 59.312 40.909 9.44 9.44 46.39 2.66
139 140 2.653890 CACGGCAAAGTTCATGTGAAG 58.346 47.619 0.00 0.00 34.27 3.02
141 142 0.310543 GCACGGCAAAGTTCATGTGA 59.689 50.000 0.00 0.00 0.00 3.58
150 151 1.498865 AAGTCTGTCGCACGGCAAAG 61.499 55.000 0.00 0.00 0.00 2.77
160 161 2.095161 GGAGAGGTGTACAAGTCTGTCG 60.095 54.545 11.97 0.00 36.96 4.35
172 173 0.251653 TACTTCTGGCGGAGAGGTGT 60.252 55.000 8.80 0.00 41.03 4.16
175 176 0.741915 GACTACTTCTGGCGGAGAGG 59.258 60.000 0.00 0.00 33.90 3.69
180 181 1.805945 GCGTGACTACTTCTGGCGG 60.806 63.158 0.00 0.00 0.00 6.13
181 182 2.152699 CGCGTGACTACTTCTGGCG 61.153 63.158 0.00 0.00 39.21 5.69
185 186 4.438472 GGATAGAAACGCGTGACTACTTCT 60.438 45.833 21.26 21.26 0.00 2.85
191 192 0.801067 GCGGATAGAAACGCGTGACT 60.801 55.000 14.98 17.77 46.58 3.41
207 208 1.301087 TGGTGTGTTCGTTAGGCGG 60.301 57.895 0.00 0.00 41.72 6.13
216 218 4.266739 GGTTTTCGATTTTGTGGTGTGTTC 59.733 41.667 0.00 0.00 0.00 3.18
231 233 3.500299 TCATGCAAAATCTCGGTTTTCGA 59.500 39.130 0.00 0.00 46.77 3.71
233 235 6.710692 AATTCATGCAAAATCTCGGTTTTC 57.289 33.333 0.00 0.00 0.00 2.29
248 251 9.448294 TTTATTGTTTTCTTGCAAAATTCATGC 57.552 25.926 0.00 8.77 44.08 4.06
262 265 8.836413 TCTCGTGACAGAATTTTATTGTTTTCT 58.164 29.630 0.00 0.00 0.00 2.52
267 270 8.783093 TCAAATCTCGTGACAGAATTTTATTGT 58.217 29.630 0.00 0.00 0.00 2.71
270 273 8.777865 TCTCAAATCTCGTGACAGAATTTTAT 57.222 30.769 0.00 0.00 0.00 1.40
271 274 8.601845 TTCTCAAATCTCGTGACAGAATTTTA 57.398 30.769 0.00 0.00 0.00 1.52
272 275 7.496529 TTCTCAAATCTCGTGACAGAATTTT 57.503 32.000 0.00 0.00 0.00 1.82
277 280 4.280929 TCCTTTCTCAAATCTCGTGACAGA 59.719 41.667 0.00 0.00 0.00 3.41
280 283 5.924475 TTTCCTTTCTCAAATCTCGTGAC 57.076 39.130 0.00 0.00 0.00 3.67
283 286 5.932303 TCGATTTTCCTTTCTCAAATCTCGT 59.068 36.000 0.00 0.00 35.57 4.18
285 288 9.283420 GAAATCGATTTTCCTTTCTCAAATCTC 57.717 33.333 23.49 2.15 38.22 2.75
286 289 7.965107 CGAAATCGATTTTCCTTTCTCAAATCT 59.035 33.333 23.49 0.00 40.60 2.40
287 290 7.962918 TCGAAATCGATTTTCCTTTCTCAAATC 59.037 33.333 23.49 5.83 44.22 2.17
288 291 7.816640 TCGAAATCGATTTTCCTTTCTCAAAT 58.183 30.769 23.49 0.00 44.22 2.32
289 292 7.197071 TCGAAATCGATTTTCCTTTCTCAAA 57.803 32.000 23.49 0.00 44.22 2.69
290 293 6.795098 TCGAAATCGATTTTCCTTTCTCAA 57.205 33.333 23.49 0.00 44.22 3.02
346 351 2.172505 TGTGGGATTCCATACGAGCAAT 59.827 45.455 0.00 0.00 46.09 3.56
347 352 1.557371 TGTGGGATTCCATACGAGCAA 59.443 47.619 0.00 0.00 46.09 3.91
366 371 2.540361 CCGTATTACTCGTTCTCCCGTG 60.540 54.545 0.00 0.00 0.00 4.94
367 372 1.672881 CCGTATTACTCGTTCTCCCGT 59.327 52.381 0.00 0.00 0.00 5.28
443 448 1.921869 ATAGCCGTTGGGGGAACTGG 61.922 60.000 0.00 0.00 35.78 4.00
493 520 2.158519 GGGGTGGAAATAGTGGTATGGG 60.159 54.545 0.00 0.00 0.00 4.00
496 523 2.171870 CGTGGGGTGGAAATAGTGGTAT 59.828 50.000 0.00 0.00 0.00 2.73
497 524 1.555992 CGTGGGGTGGAAATAGTGGTA 59.444 52.381 0.00 0.00 0.00 3.25
523 561 3.327404 GGGCGGGGAGTTCTTGGA 61.327 66.667 0.00 0.00 0.00 3.53
542 580 4.966787 TTGGTTCTGTGCGGGGGC 62.967 66.667 0.00 0.00 0.00 5.80
543 581 2.983592 GTTGGTTCTGTGCGGGGG 60.984 66.667 0.00 0.00 0.00 5.40
725 771 3.314080 TCGCAACCAGTAACCAAGAAAAG 59.686 43.478 0.00 0.00 0.00 2.27
726 772 3.280295 TCGCAACCAGTAACCAAGAAAA 58.720 40.909 0.00 0.00 0.00 2.29
727 773 2.920524 TCGCAACCAGTAACCAAGAAA 58.079 42.857 0.00 0.00 0.00 2.52
728 774 2.623878 TCGCAACCAGTAACCAAGAA 57.376 45.000 0.00 0.00 0.00 2.52
729 775 2.301870 AGATCGCAACCAGTAACCAAGA 59.698 45.455 0.00 0.00 0.00 3.02
730 776 2.673368 GAGATCGCAACCAGTAACCAAG 59.327 50.000 0.00 0.00 0.00 3.61
741 789 1.798813 ACCAAGAAACGAGATCGCAAC 59.201 47.619 1.39 0.00 44.43 4.17
795 843 8.300286 GGAGAGGAATTTTTCTACCAAAAGAAG 58.700 37.037 0.00 0.00 36.85 2.85
831 879 3.869866 CGGAAAGCAATAACGGACG 57.130 52.632 0.00 0.00 0.00 4.79
836 884 1.664151 CTCGGACCGGAAAGCAATAAC 59.336 52.381 15.25 0.00 0.00 1.89
840 888 0.882927 CAACTCGGACCGGAAAGCAA 60.883 55.000 15.25 0.00 0.00 3.91
841 889 1.301401 CAACTCGGACCGGAAAGCA 60.301 57.895 15.25 0.00 0.00 3.91
842 890 0.391263 ATCAACTCGGACCGGAAAGC 60.391 55.000 15.25 0.00 0.00 3.51
843 891 2.094762 AATCAACTCGGACCGGAAAG 57.905 50.000 15.25 6.80 0.00 2.62
844 892 2.147958 CAAATCAACTCGGACCGGAAA 58.852 47.619 15.25 0.00 0.00 3.13
845 893 1.609580 CCAAATCAACTCGGACCGGAA 60.610 52.381 15.25 0.00 0.00 4.30
846 894 0.036765 CCAAATCAACTCGGACCGGA 60.037 55.000 15.25 3.25 0.00 5.14
847 895 0.321298 ACCAAATCAACTCGGACCGG 60.321 55.000 15.25 0.00 0.00 5.28
848 896 1.519408 AACCAAATCAACTCGGACCG 58.481 50.000 7.84 7.84 0.00 4.79
849 897 2.621526 ACAAACCAAATCAACTCGGACC 59.378 45.455 0.00 0.00 0.00 4.46
850 898 3.982576 ACAAACCAAATCAACTCGGAC 57.017 42.857 0.00 0.00 0.00 4.79
851 899 7.931578 ATATAACAAACCAAATCAACTCGGA 57.068 32.000 0.00 0.00 0.00 4.55
872 921 3.344515 TCGCAGGCAGACGAGTATATAT 58.655 45.455 0.00 0.00 33.69 0.86
873 922 2.774687 TCGCAGGCAGACGAGTATATA 58.225 47.619 0.00 0.00 33.69 0.86
925 978 1.299541 CAATTCGAACCGGGGATCAG 58.700 55.000 6.32 0.00 0.00 2.90
926 979 0.746563 GCAATTCGAACCGGGGATCA 60.747 55.000 6.32 0.00 0.00 2.92
936 989 4.799949 GCAAGATTAGCAATGCAATTCGAA 59.200 37.500 8.35 0.00 38.63 3.71
952 1005 3.533606 AGTACTGATGCGAGCAAGATT 57.466 42.857 0.57 0.00 0.00 2.40
991 1055 0.178767 CCTGCGTCCATGGATCAGAA 59.821 55.000 32.04 17.50 32.93 3.02
1077 1141 3.134127 GGCATGGAGGGCGTCAAC 61.134 66.667 9.66 0.00 0.00 3.18
1239 1310 2.672714 TCAGTCATTCCGTCGAACAAG 58.327 47.619 0.00 0.00 0.00 3.16
1276 1353 1.067516 CCCTGCCAGACAAACAAACAG 59.932 52.381 0.00 0.00 0.00 3.16
1448 1531 3.785859 GGCGAGGATCCTGGTGCA 61.786 66.667 22.02 0.00 0.00 4.57
1660 1751 3.379372 CGGACTGCATCAGATTTCCAATT 59.621 43.478 0.29 0.00 35.18 2.32
1687 1785 2.202987 GGCGCATCCAGAGTCCTG 60.203 66.667 10.83 0.00 40.09 3.86
2004 2602 6.514947 TGATCAGCAACTAAAAAGCACAAAT 58.485 32.000 0.00 0.00 0.00 2.32
2005 2603 5.900425 TGATCAGCAACTAAAAAGCACAAA 58.100 33.333 0.00 0.00 0.00 2.83
2006 2604 5.512753 TGATCAGCAACTAAAAAGCACAA 57.487 34.783 0.00 0.00 0.00 3.33
2169 2774 1.515954 CCCGCGGTATGTCTGAACT 59.484 57.895 26.12 0.00 0.00 3.01
2172 2777 3.071837 TGCCCGCGGTATGTCTGA 61.072 61.111 26.12 0.00 0.00 3.27
2523 3128 2.836372 AGTGAATCCATGTGAGCTCAGA 59.164 45.455 18.89 17.80 0.00 3.27
2556 3161 0.465287 ACGGGTACTTCCACAACGTT 59.535 50.000 0.00 0.00 38.11 3.99
2559 3164 0.314935 TCGACGGGTACTTCCACAAC 59.685 55.000 0.00 0.00 38.11 3.32
2694 3310 6.949352 AAAGATAACCATAAGCCATCTGTG 57.051 37.500 0.00 0.00 0.00 3.66
2695 3311 6.891908 ACAAAAGATAACCATAAGCCATCTGT 59.108 34.615 0.00 0.00 0.00 3.41
2696 3312 7.338800 ACAAAAGATAACCATAAGCCATCTG 57.661 36.000 0.00 0.00 0.00 2.90
2712 3345 5.594926 CTCTGCAAAGGTTCAACAAAAGAT 58.405 37.500 0.00 0.00 0.00 2.40
2802 3624 2.202676 GCAGACTTCGGAGCCTCG 60.203 66.667 0.00 0.00 0.00 4.63
2820 3642 4.950050 TCTGTGAAGTCTTCTCTTTCACC 58.050 43.478 13.67 0.00 31.34 4.02
2891 3716 2.965831 TCTCAGAGTTACACCAGTTGCT 59.034 45.455 0.00 0.00 0.00 3.91
2899 3724 6.015027 TGCTACTTCTTCTCAGAGTTACAC 57.985 41.667 0.00 0.00 0.00 2.90
2900 3725 5.184096 CCTGCTACTTCTTCTCAGAGTTACA 59.816 44.000 0.00 0.00 0.00 2.41
2911 3736 1.537135 CGCCTAGCCTGCTACTTCTTC 60.537 57.143 0.00 0.00 0.00 2.87
2925 3750 1.661112 GCAGTTACTCTTTGCGCCTAG 59.339 52.381 4.18 1.52 0.00 3.02
2926 3751 1.001520 TGCAGTTACTCTTTGCGCCTA 59.998 47.619 4.18 0.00 40.62 3.93
2927 3752 0.250295 TGCAGTTACTCTTTGCGCCT 60.250 50.000 4.18 0.00 40.62 5.52
2928 3753 0.804989 ATGCAGTTACTCTTTGCGCC 59.195 50.000 4.18 0.00 40.62 6.53
2929 3754 1.464608 TGATGCAGTTACTCTTTGCGC 59.535 47.619 0.00 0.00 40.62 6.09
2931 3756 4.730035 GCTCATGATGCAGTTACTCTTTGC 60.730 45.833 10.95 0.00 38.30 3.68
2932 3757 4.634883 AGCTCATGATGCAGTTACTCTTTG 59.365 41.667 16.20 0.00 0.00 2.77
2934 3759 4.081254 TCAGCTCATGATGCAGTTACTCTT 60.081 41.667 16.20 0.00 31.12 2.85
2935 3760 3.450096 TCAGCTCATGATGCAGTTACTCT 59.550 43.478 16.20 0.00 31.12 3.24
2936 3761 3.790091 TCAGCTCATGATGCAGTTACTC 58.210 45.455 16.20 0.00 31.12 2.59
2937 3762 3.900966 TCAGCTCATGATGCAGTTACT 57.099 42.857 16.20 0.00 31.12 2.24
2993 3818 3.895232 AGCATACTGAAGTACCCACAG 57.105 47.619 9.11 9.11 37.62 3.66
3084 3915 9.080097 GGGAGTACTATATATCACTGACAAAGT 57.920 37.037 0.00 0.00 40.93 2.66
3085 3916 9.303116 AGGGAGTACTATATATCACTGACAAAG 57.697 37.037 0.00 0.00 0.00 2.77
3087 3918 7.889073 GGAGGGAGTACTATATATCACTGACAA 59.111 40.741 0.00 0.00 0.00 3.18
3109 3940 3.552273 CGACAATTAGTATGGGTCGGAGG 60.552 52.174 0.00 0.00 45.36 4.30
3121 3952 5.646577 ACTAGAGAGTTGCGACAATTAGT 57.353 39.130 6.90 5.91 28.61 2.24
3122 3953 6.552629 TGTACTAGAGAGTTGCGACAATTAG 58.447 40.000 6.90 5.32 37.10 1.73
3169 4106 6.237648 CGATCCAAATTAATTGTTGCAGCTTC 60.238 38.462 0.39 0.00 37.32 3.86
3207 4144 8.316214 AGACCATGCATTGTTCATAAGAAAAAT 58.684 29.630 4.71 0.00 41.35 1.82
3215 4153 6.587206 TTTTGAGACCATGCATTGTTCATA 57.413 33.333 4.71 4.18 0.00 2.15
3241 4179 3.175152 CAGATACTCTCAAGCGACACAC 58.825 50.000 0.00 0.00 0.00 3.82
3249 4187 6.344500 AGGCAACAATACAGATACTCTCAAG 58.656 40.000 0.00 0.00 41.41 3.02
3260 4198 7.820648 AGAATAGTTTTGAGGCAACAATACAG 58.179 34.615 15.38 0.00 35.38 2.74
3261 4199 7.759489 AGAATAGTTTTGAGGCAACAATACA 57.241 32.000 15.38 6.67 35.38 2.29
3263 4201 8.637986 ACAAAGAATAGTTTTGAGGCAACAATA 58.362 29.630 4.87 0.00 38.55 1.90
3265 4203 6.872920 ACAAAGAATAGTTTTGAGGCAACAA 58.127 32.000 4.87 0.00 38.55 2.83
3309 4251 2.101125 CGTCAACAGCAAAAACAGTCG 58.899 47.619 0.00 0.00 0.00 4.18
3315 4259 1.202245 GCCTCACGTCAACAGCAAAAA 60.202 47.619 0.00 0.00 0.00 1.94
3379 4323 0.396435 TAGTGGTGTGGTGGCTTCAG 59.604 55.000 0.00 0.00 0.00 3.02
3392 4346 9.975218 AGAAGAATAACATGGTAAAATAGTGGT 57.025 29.630 0.00 0.00 0.00 4.16
3412 4366 4.141937 CCATGTATGACCCGAGAAGAAGAA 60.142 45.833 0.00 0.00 0.00 2.52
3413 4367 3.384789 CCATGTATGACCCGAGAAGAAGA 59.615 47.826 0.00 0.00 0.00 2.87
3414 4368 3.384789 TCCATGTATGACCCGAGAAGAAG 59.615 47.826 0.00 0.00 0.00 2.85
3446 4403 1.001048 CACACACAGGTTCCATTGCAG 60.001 52.381 0.00 0.00 0.00 4.41
3447 4404 1.031235 CACACACAGGTTCCATTGCA 58.969 50.000 0.00 0.00 0.00 4.08
3464 4421 2.832129 TCTGGATTCAGTGGGAGTACAC 59.168 50.000 0.00 0.00 41.59 2.90
3484 4441 2.424956 CCTGCTCCAATTTTGCTAGGTC 59.575 50.000 0.00 0.00 0.00 3.85
3530 4487 2.740981 CTCCAACATCTGAAGCTGACAC 59.259 50.000 0.00 0.00 0.00 3.67
3532 4489 2.027745 TCCTCCAACATCTGAAGCTGAC 60.028 50.000 0.00 0.00 0.00 3.51
3542 4499 0.326264 ACAGCAGGTCCTCCAACATC 59.674 55.000 0.00 0.00 35.89 3.06
3560 4517 3.341291 GGCTTCAGCTTGGCACAAGAC 62.341 57.143 16.28 9.12 40.37 3.01
3561 4518 1.174712 GGCTTCAGCTTGGCACAAGA 61.175 55.000 16.28 0.00 40.37 3.02
3562 4519 1.288127 GGCTTCAGCTTGGCACAAG 59.712 57.895 9.75 9.75 40.37 3.16
3563 4520 1.042003 TTGGCTTCAGCTTGGCACAA 61.042 50.000 6.84 5.08 40.37 3.33
3564 4521 1.042003 TTTGGCTTCAGCTTGGCACA 61.042 50.000 6.84 0.00 41.70 4.57
3565 4522 0.319297 CTTTGGCTTCAGCTTGGCAC 60.319 55.000 6.84 0.00 41.70 5.01
3566 4523 0.467844 TCTTTGGCTTCAGCTTGGCA 60.468 50.000 0.00 3.73 41.70 4.92
3567 4524 0.675633 TTCTTTGGCTTCAGCTTGGC 59.324 50.000 0.00 0.00 41.70 4.52
3568 4525 3.243975 ACATTTCTTTGGCTTCAGCTTGG 60.244 43.478 0.00 0.00 41.70 3.61
3569 4526 3.739300 CACATTTCTTTGGCTTCAGCTTG 59.261 43.478 0.00 0.00 41.70 4.01
3570 4527 3.243975 CCACATTTCTTTGGCTTCAGCTT 60.244 43.478 0.00 0.00 41.70 3.74
3571 4528 2.298163 CCACATTTCTTTGGCTTCAGCT 59.702 45.455 0.00 0.00 41.70 4.24
3572 4529 2.680577 CCACATTTCTTTGGCTTCAGC 58.319 47.619 0.00 0.00 41.14 4.26
3579 4536 3.191078 TGGTTTGCCACATTTCTTTGG 57.809 42.857 0.00 0.00 40.46 3.28
3604 4561 6.659824 ACTGAAAGAAGAACAAGAGGGTAAA 58.340 36.000 0.00 0.00 37.43 2.01
3621 4578 6.444633 AGATGCACATTTCTTTGACTGAAAG 58.555 36.000 0.00 0.00 42.33 2.62
3708 4674 5.051907 GCTAATCTGATTTTGCGAATGCTTG 60.052 40.000 8.38 0.00 43.34 4.01
3709 4675 5.039333 GCTAATCTGATTTTGCGAATGCTT 58.961 37.500 8.38 0.00 43.34 3.91
3710 4676 4.096833 TGCTAATCTGATTTTGCGAATGCT 59.903 37.500 8.38 0.00 43.34 3.79
3711 4677 4.353737 TGCTAATCTGATTTTGCGAATGC 58.646 39.130 8.38 2.40 43.20 3.56
3751 4717 8.877864 AATGGTAAATTTCACTGGTAATCTCA 57.122 30.769 0.00 0.00 0.00 3.27
3752 4718 9.788960 GAAATGGTAAATTTCACTGGTAATCTC 57.211 33.333 0.00 0.00 37.80 2.75
3753 4719 9.533831 AGAAATGGTAAATTTCACTGGTAATCT 57.466 29.630 12.05 0.00 39.71 2.40
3780 4746 2.875933 CCGTGCTACTTTTGGTTGAAGA 59.124 45.455 0.00 0.00 0.00 2.87
3782 4748 2.645802 ACCGTGCTACTTTTGGTTGAA 58.354 42.857 0.00 0.00 0.00 2.69
3783 4749 2.335316 ACCGTGCTACTTTTGGTTGA 57.665 45.000 0.00 0.00 0.00 3.18
3785 4751 4.883006 TCTTTTACCGTGCTACTTTTGGTT 59.117 37.500 0.00 0.00 34.18 3.67
3786 4752 4.453751 TCTTTTACCGTGCTACTTTTGGT 58.546 39.130 0.00 0.00 36.72 3.67
3787 4753 5.622770 ATCTTTTACCGTGCTACTTTTGG 57.377 39.130 0.00 0.00 0.00 3.28
3788 4754 6.741358 GCTAATCTTTTACCGTGCTACTTTTG 59.259 38.462 0.00 0.00 0.00 2.44
3789 4755 6.401796 CGCTAATCTTTTACCGTGCTACTTTT 60.402 38.462 0.00 0.00 0.00 2.27
3800 4767 4.095782 TCAATGCACCGCTAATCTTTTACC 59.904 41.667 0.00 0.00 0.00 2.85
3811 4778 1.071299 TCTGTGTCAATGCACCGCT 59.929 52.632 0.00 0.00 38.52 5.52
3814 4781 0.884704 ACGGTCTGTGTCAATGCACC 60.885 55.000 0.00 0.00 38.52 5.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.