Multiple sequence alignment - TraesCS2A01G439900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G439900 chr2A 100.000 4337 0 0 418 4754 690923004 690927340 0.000000e+00 8010.0
1 TraesCS2A01G439900 chr2A 100.000 163 0 0 1 163 690922587 690922749 7.730000e-78 302.0
2 TraesCS2A01G439900 chr2A 83.516 91 11 4 428 516 692035843 692035931 1.100000e-11 82.4
3 TraesCS2A01G439900 chr2D 91.516 2935 182 28 1380 4289 548086269 548083377 0.000000e+00 3978.0
4 TraesCS2A01G439900 chr2D 88.222 433 30 6 922 1338 548086699 548086272 9.190000e-137 497.0
5 TraesCS2A01G439900 chr2D 82.111 341 48 11 4420 4753 548083305 548082971 3.620000e-71 279.0
6 TraesCS2A01G439900 chr2B 91.340 2448 152 25 1380 3788 655016805 655014379 0.000000e+00 3291.0
7 TraesCS2A01G439900 chr2B 88.564 411 23 9 945 1338 655017211 655016808 1.200000e-130 477.0
8 TraesCS2A01G439900 chr2B 87.812 320 34 3 527 843 361434051 361434368 2.090000e-98 370.0
9 TraesCS2A01G439900 chr2B 92.913 127 8 1 1 127 361433611 361433736 2.920000e-42 183.0
10 TraesCS2A01G439900 chr6D 85.163 674 73 16 1194 1857 251262364 251261708 0.000000e+00 665.0
11 TraesCS2A01G439900 chr6D 85.847 431 40 7 433 843 465053856 465054285 5.650000e-119 438.0
12 TraesCS2A01G439900 chr6D 95.489 133 6 0 1 133 465053376 465053508 3.730000e-51 213.0
13 TraesCS2A01G439900 chr6D 93.233 133 9 0 1 133 13368410 13368542 3.750000e-46 196.0
14 TraesCS2A01G439900 chr6D 94.444 54 3 0 1184 1237 447841025 447841078 3.050000e-12 84.2
15 TraesCS2A01G439900 chr7A 94.419 430 22 2 418 846 24771184 24770756 0.000000e+00 660.0
16 TraesCS2A01G439900 chr7A 94.118 425 21 1 418 842 26876015 26876435 1.120000e-180 643.0
17 TraesCS2A01G439900 chr7A 98.496 133 2 0 1 133 26875725 26875857 7.950000e-58 235.0
18 TraesCS2A01G439900 chr7A 96.992 133 4 0 1 133 24771707 24771575 1.720000e-54 224.0
19 TraesCS2A01G439900 chr3D 89.647 425 22 5 418 842 503776133 503775731 5.450000e-144 521.0
20 TraesCS2A01G439900 chr3D 96.241 133 5 0 1 133 503776414 503776282 8.010000e-53 219.0
21 TraesCS2A01G439900 chr3D 88.489 139 16 0 704 842 484096733 484096595 8.180000e-38 169.0
22 TraesCS2A01G439900 chr6A 95.652 230 10 0 418 647 155801537 155801308 2.090000e-98 370.0
23 TraesCS2A01G439900 chr6A 92.578 256 19 0 595 850 155801307 155801052 7.520000e-98 368.0
24 TraesCS2A01G439900 chr6A 96.241 133 5 0 1 133 155801826 155801694 8.010000e-53 219.0
25 TraesCS2A01G439900 chr6A 94.444 54 3 0 1184 1237 594430434 594430487 3.050000e-12 84.2
26 TraesCS2A01G439900 chr5A 93.333 240 16 0 595 834 84161527 84161766 5.850000e-94 355.0
27 TraesCS2A01G439900 chr5A 93.913 230 14 0 418 647 84161297 84161526 9.790000e-92 348.0
28 TraesCS2A01G439900 chr5A 97.744 133 3 0 1 133 84161008 84161140 3.700000e-56 230.0
29 TraesCS2A01G439900 chr5D 87.248 149 18 1 704 851 505942194 505942046 8.180000e-38 169.0
30 TraesCS2A01G439900 chr4D 83.333 126 21 0 2 127 124525251 124525376 3.010000e-22 117.0
31 TraesCS2A01G439900 chr1B 81.967 122 19 3 4326 4446 489501640 489501521 3.030000e-17 100.0
32 TraesCS2A01G439900 chr6B 94.444 54 3 0 1184 1237 678661345 678661398 3.050000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G439900 chr2A 690922587 690927340 4753 False 4156.000000 8010 100.000000 1 4754 2 chr2A.!!$F2 4753
1 TraesCS2A01G439900 chr2D 548082971 548086699 3728 True 1584.666667 3978 87.283000 922 4753 3 chr2D.!!$R1 3831
2 TraesCS2A01G439900 chr2B 655014379 655017211 2832 True 1884.000000 3291 89.952000 945 3788 2 chr2B.!!$R1 2843
3 TraesCS2A01G439900 chr2B 361433611 361434368 757 False 276.500000 370 90.362500 1 843 2 chr2B.!!$F1 842
4 TraesCS2A01G439900 chr6D 251261708 251262364 656 True 665.000000 665 85.163000 1194 1857 1 chr6D.!!$R1 663
5 TraesCS2A01G439900 chr6D 465053376 465054285 909 False 325.500000 438 90.668000 1 843 2 chr6D.!!$F3 842
6 TraesCS2A01G439900 chr7A 24770756 24771707 951 True 442.000000 660 95.705500 1 846 2 chr7A.!!$R1 845
7 TraesCS2A01G439900 chr7A 26875725 26876435 710 False 439.000000 643 96.307000 1 842 2 chr7A.!!$F1 841
8 TraesCS2A01G439900 chr3D 503775731 503776414 683 True 370.000000 521 92.944000 1 842 2 chr3D.!!$R2 841
9 TraesCS2A01G439900 chr6A 155801052 155801826 774 True 319.000000 370 94.823667 1 850 3 chr6A.!!$R1 849
10 TraesCS2A01G439900 chr5A 84161008 84161766 758 False 311.000000 355 94.996667 1 834 3 chr5A.!!$F1 833

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
561 738 0.036306 GAAGGAAAGGGTTCGGCAGA 59.964 55.0 0.00 0.00 34.28 4.26 F
1466 1726 0.169451 CGGCGTGGATTTAAACCCAC 59.831 55.0 20.45 20.45 46.99 4.61 F
3316 3617 0.248843 GGCTGGAGAGACTGGTTGAG 59.751 60.0 0.00 0.00 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2220 2488 0.389025 CAACCCACCTTGCTTTCACC 59.611 55.0 0.0 0.0 0.0 4.02 R
3395 3696 0.827507 GAGGAAAGGTTTGGCTGGCA 60.828 55.0 0.0 0.0 0.0 4.92 R
4340 4662 0.034896 GAGGTGGCTGTTTTCTCGGA 59.965 55.0 0.0 0.0 0.0 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
127 128 6.434018 TCATGATAATGCACGACATTCAAA 57.566 33.333 10.85 0.00 46.28 2.69
142 232 5.567234 CATTCAAATGTATCTCGTCCTCG 57.433 43.478 0.00 0.00 38.55 4.63
152 242 2.092323 TCTCGTCCTCGTTGATGATGT 58.908 47.619 0.55 0.00 38.33 3.06
162 252 2.016318 GTTGATGATGTTGGCGGATCA 58.984 47.619 0.00 0.00 33.20 2.92
489 614 1.237285 AAGTGCCATGACGAAGGTGC 61.237 55.000 0.00 0.00 0.00 5.01
547 724 0.909623 GGGAAATCGAGTGGGAAGGA 59.090 55.000 0.00 0.00 0.00 3.36
561 738 0.036306 GAAGGAAAGGGTTCGGCAGA 59.964 55.000 0.00 0.00 34.28 4.26
603 782 1.735018 GGTTGTGTTTTTGTTGTGGGC 59.265 47.619 0.00 0.00 0.00 5.36
633 812 8.628630 TGTGTTTGAGATAACATGGTGAATTA 57.371 30.769 0.00 0.00 39.93 1.40
638 817 8.956533 TTGAGATAACATGGTGAATTATTCGA 57.043 30.769 0.00 0.00 0.00 3.71
660 892 7.008332 TCGATTAACCAGAACCCTCTATATGA 58.992 38.462 0.00 0.00 0.00 2.15
699 932 0.898326 GCGGTTGGATTTTGGGGAGT 60.898 55.000 0.00 0.00 0.00 3.85
725 958 1.129811 GGACGCTTATTTGGTGTTCGG 59.870 52.381 0.00 0.00 0.00 4.30
834 1070 1.529438 CGTAGCAACACACGGTCATTT 59.471 47.619 0.00 0.00 34.57 2.32
845 1081 7.412137 ACACACGGTCATTTTACTAGTTTAC 57.588 36.000 0.00 0.00 0.00 2.01
894 1130 9.594478 AAAATACAAGAGGTTTAAAAAGTGTGG 57.406 29.630 0.00 0.00 0.00 4.17
895 1131 5.006153 ACAAGAGGTTTAAAAAGTGTGGC 57.994 39.130 0.00 0.00 0.00 5.01
896 1132 4.464597 ACAAGAGGTTTAAAAAGTGTGGCA 59.535 37.500 0.00 0.00 0.00 4.92
897 1133 5.046950 ACAAGAGGTTTAAAAAGTGTGGCAA 60.047 36.000 0.00 0.00 0.00 4.52
898 1134 5.669164 AGAGGTTTAAAAAGTGTGGCAAA 57.331 34.783 0.00 0.00 0.00 3.68
899 1135 5.660460 AGAGGTTTAAAAAGTGTGGCAAAG 58.340 37.500 0.00 0.00 0.00 2.77
900 1136 5.420739 AGAGGTTTAAAAAGTGTGGCAAAGA 59.579 36.000 0.00 0.00 0.00 2.52
901 1137 6.098266 AGAGGTTTAAAAAGTGTGGCAAAGAT 59.902 34.615 0.00 0.00 0.00 2.40
902 1138 6.048509 AGGTTTAAAAAGTGTGGCAAAGATG 58.951 36.000 0.00 0.00 0.00 2.90
915 1151 2.157738 CAAAGATGCCTATAGCCCTGC 58.842 52.381 0.00 0.00 42.71 4.85
916 1152 0.695347 AAGATGCCTATAGCCCTGCC 59.305 55.000 0.00 0.00 42.71 4.85
917 1153 1.204113 AGATGCCTATAGCCCTGCCC 61.204 60.000 0.00 0.00 42.71 5.36
918 1154 2.203549 GATGCCTATAGCCCTGCCCC 62.204 65.000 0.00 0.00 42.71 5.80
919 1155 2.530406 GCCTATAGCCCTGCCCCT 60.530 66.667 0.00 0.00 34.35 4.79
920 1156 2.900106 GCCTATAGCCCTGCCCCTG 61.900 68.421 0.00 0.00 34.35 4.45
921 1157 2.753029 CTATAGCCCTGCCCCTGC 59.247 66.667 0.00 0.00 38.26 4.85
922 1158 1.845205 CTATAGCCCTGCCCCTGCT 60.845 63.158 0.00 0.00 38.71 4.24
923 1159 1.835927 CTATAGCCCTGCCCCTGCTC 61.836 65.000 0.00 0.00 38.71 4.26
924 1160 2.332258 TATAGCCCTGCCCCTGCTCT 62.332 60.000 0.00 0.00 38.71 4.09
925 1161 2.332258 ATAGCCCTGCCCCTGCTCTA 62.332 60.000 0.00 0.00 38.71 2.43
926 1162 2.954254 TAGCCCTGCCCCTGCTCTAG 62.954 65.000 0.00 0.00 38.71 2.43
927 1163 2.366167 CCCTGCCCCTGCTCTAGT 60.366 66.667 0.00 0.00 38.71 2.57
928 1164 2.439104 CCCTGCCCCTGCTCTAGTC 61.439 68.421 0.00 0.00 38.71 2.59
929 1165 2.790791 CCTGCCCCTGCTCTAGTCG 61.791 68.421 0.00 0.00 38.71 4.18
936 1172 0.653636 CCTGCTCTAGTCGACGTCTC 59.346 60.000 14.70 6.75 0.00 3.36
993 1229 2.359975 CCAAGTTCACCCGGGAGC 60.360 66.667 32.02 13.80 0.00 4.70
1008 1250 2.765807 AGCTCAGGTATGGCGGCT 60.766 61.111 11.43 0.00 0.00 5.52
1074 1316 1.568597 TCCTCCTCCTCTCTTCTCCAG 59.431 57.143 0.00 0.00 0.00 3.86
1084 1326 3.077556 TTCTCCAGCGCCCTCTCC 61.078 66.667 2.29 0.00 0.00 3.71
1092 1334 1.524849 GCGCCCTCTCCATTCCTTC 60.525 63.158 0.00 0.00 0.00 3.46
1105 1347 3.371273 CCATTCCTTCTCCAGATGCTTCA 60.371 47.826 2.07 0.00 0.00 3.02
1250 1506 2.581074 AGGTCCACCTCGCTTACTC 58.419 57.895 0.00 0.00 44.77 2.59
1270 1526 4.072839 CTCACCTTTCCCCTTGTAAAGTC 58.927 47.826 0.00 0.00 44.25 3.01
1271 1527 3.460340 TCACCTTTCCCCTTGTAAAGTCA 59.540 43.478 0.00 0.00 44.25 3.41
1272 1528 3.821033 CACCTTTCCCCTTGTAAAGTCAG 59.179 47.826 0.00 0.00 44.25 3.51
1273 1529 3.462205 ACCTTTCCCCTTGTAAAGTCAGT 59.538 43.478 0.00 0.00 44.25 3.41
1277 1533 6.465321 CCTTTCCCCTTGTAAAGTCAGTCTTA 60.465 42.308 0.00 0.00 44.25 2.10
1282 1538 6.210984 CCCCTTGTAAAGTCAGTCTTACTAGT 59.789 42.308 0.00 0.00 44.25 2.57
1295 1552 1.396653 TACTAGTTGGAGCGGTAGGC 58.603 55.000 0.00 0.00 44.05 3.93
1338 1595 4.560128 TGAACTCTGAACTCACTGCATAC 58.440 43.478 0.00 0.00 0.00 2.39
1340 1597 4.448537 ACTCTGAACTCACTGCATACTC 57.551 45.455 0.00 0.00 0.00 2.59
1342 1599 4.526262 ACTCTGAACTCACTGCATACTCTT 59.474 41.667 0.00 0.00 0.00 2.85
1347 1604 5.698089 TGAACTCACTGCATACTCTTTTCTG 59.302 40.000 0.00 0.00 0.00 3.02
1350 1607 4.248859 TCACTGCATACTCTTTTCTGCTC 58.751 43.478 0.00 0.00 35.66 4.26
1356 1613 2.910688 ACTCTTTTCTGCTCGACCAA 57.089 45.000 0.00 0.00 0.00 3.67
1361 1618 4.637276 TCTTTTCTGCTCGACCAATGTAA 58.363 39.130 0.00 0.00 0.00 2.41
1362 1619 4.690748 TCTTTTCTGCTCGACCAATGTAAG 59.309 41.667 0.00 0.00 0.00 2.34
1367 1624 2.128035 GCTCGACCAATGTAAGATCCG 58.872 52.381 0.00 0.00 0.00 4.18
1369 1626 3.737047 GCTCGACCAATGTAAGATCCGAA 60.737 47.826 0.00 0.00 0.00 4.30
1371 1628 4.368315 TCGACCAATGTAAGATCCGAATG 58.632 43.478 0.00 0.00 0.00 2.67
1376 1633 4.273480 CCAATGTAAGATCCGAATGTCCAC 59.727 45.833 0.00 0.00 0.00 4.02
1378 1635 4.386867 TGTAAGATCCGAATGTCCACTC 57.613 45.455 0.00 0.00 0.00 3.51
1385 1642 1.723870 GAATGTCCACTCATGGCGC 59.276 57.895 0.00 0.00 46.80 6.53
1387 1644 0.608856 AATGTCCACTCATGGCGCAA 60.609 50.000 10.83 0.00 46.80 4.85
1388 1645 1.308069 ATGTCCACTCATGGCGCAAC 61.308 55.000 10.83 0.00 46.80 4.17
1424 1681 6.891624 TGAATTCAGATTTGAGAAACTGACG 58.108 36.000 3.38 0.00 38.77 4.35
1439 1697 1.459209 CTGACGCGCATCAGTAAAACA 59.541 47.619 24.52 0.00 41.12 2.83
1440 1698 1.459209 TGACGCGCATCAGTAAAACAG 59.541 47.619 0.05 0.00 0.00 3.16
1441 1699 1.459592 GACGCGCATCAGTAAAACAGT 59.540 47.619 5.73 0.00 0.00 3.55
1442 1700 2.664568 GACGCGCATCAGTAAAACAGTA 59.335 45.455 5.73 0.00 0.00 2.74
1443 1701 2.410730 ACGCGCATCAGTAAAACAGTAC 59.589 45.455 5.73 0.00 0.00 2.73
1444 1702 2.532193 CGCGCATCAGTAAAACAGTACG 60.532 50.000 8.75 0.00 0.00 3.67
1445 1703 2.222729 GCGCATCAGTAAAACAGTACGG 60.223 50.000 0.30 0.00 0.00 4.02
1464 1724 1.804598 CCGGCGTGGATTTAAACCC 59.195 57.895 6.01 0.00 42.00 4.11
1466 1726 0.169451 CGGCGTGGATTTAAACCCAC 59.831 55.000 20.45 20.45 46.99 4.61
1485 1745 1.066215 ACGAATGTGCTCACTGCCATA 60.066 47.619 1.47 0.00 42.00 2.74
1486 1746 1.596260 CGAATGTGCTCACTGCCATAG 59.404 52.381 1.47 0.00 42.00 2.23
1487 1747 2.636830 GAATGTGCTCACTGCCATAGT 58.363 47.619 1.47 0.00 42.00 2.12
1577 1837 1.000955 TCTCTTTCGCAGACAACCCTC 59.999 52.381 0.00 0.00 34.32 4.30
1625 1885 2.092753 TGGGAAGAGGATTGCTGTCATC 60.093 50.000 0.00 0.00 0.00 2.92
1650 1910 5.995446 AGAATGAGGTTAACTGAAGATCCC 58.005 41.667 5.42 0.00 0.00 3.85
1658 1918 5.644206 GGTTAACTGAAGATCCCTGTTTCTC 59.356 44.000 5.42 5.32 0.00 2.87
1660 1920 2.900546 ACTGAAGATCCCTGTTTCTCGT 59.099 45.455 0.00 0.00 0.00 4.18
1677 1937 2.666508 CTCGTAGCACTTTGTTATGCGT 59.333 45.455 0.00 0.00 46.74 5.24
1678 1938 2.410392 TCGTAGCACTTTGTTATGCGTG 59.590 45.455 0.00 0.00 46.74 5.34
1679 1939 2.410392 CGTAGCACTTTGTTATGCGTGA 59.590 45.455 0.00 0.00 46.74 4.35
1680 1940 2.969443 AGCACTTTGTTATGCGTGAC 57.031 45.000 0.00 0.00 46.74 3.67
1691 1951 2.704725 ATGCGTGACCAACATTGTTC 57.295 45.000 0.00 0.00 0.00 3.18
1692 1952 1.383523 TGCGTGACCAACATTGTTCA 58.616 45.000 0.00 0.00 0.00 3.18
1711 1971 8.545229 TTGTTCAATATTATGTTTTGCAAGGG 57.455 30.769 0.00 0.00 0.00 3.95
1712 1972 7.102346 TGTTCAATATTATGTTTTGCAAGGGG 58.898 34.615 0.00 0.00 0.00 4.79
1713 1973 5.669477 TCAATATTATGTTTTGCAAGGGGC 58.331 37.500 0.00 0.00 45.13 5.80
1719 1979 1.111277 GTTTTGCAAGGGGCCGATAT 58.889 50.000 0.00 0.00 43.89 1.63
1721 1981 1.398692 TTTGCAAGGGGCCGATATTC 58.601 50.000 0.00 0.00 43.89 1.75
1726 1986 2.668550 GGGGCCGATATTCGCACC 60.669 66.667 0.00 0.86 38.82 5.01
1731 1991 1.336755 GGCCGATATTCGCACCAAATT 59.663 47.619 0.00 0.00 38.82 1.82
1788 2054 7.607991 GGTGCTATGTAGAATAAGCCATATTGT 59.392 37.037 0.00 0.00 34.30 2.71
1790 2056 8.597167 TGCTATGTAGAATAAGCCATATTGTCT 58.403 33.333 0.00 0.00 34.30 3.41
1836 2103 4.920340 GTGGATATCGATAGCTCACTTGTG 59.080 45.833 23.42 0.00 0.00 3.33
1956 2223 2.693074 GGTCAAGCAAAAGGGAGACAAA 59.307 45.455 0.00 0.00 0.00 2.83
2001 2268 7.458397 AGACAACAGGTAAATCTCATTGGTTA 58.542 34.615 0.00 0.00 0.00 2.85
2021 2288 7.391620 TGGTTAAAAATCTACCAGACTACCAG 58.608 38.462 0.00 0.00 37.04 4.00
2065 2333 7.721286 AGTCTAAAGATGTGTCAAAGTTCTG 57.279 36.000 0.00 0.00 0.00 3.02
2066 2334 6.708054 AGTCTAAAGATGTGTCAAAGTTCTGG 59.292 38.462 0.00 0.00 0.00 3.86
2078 2346 3.340814 AAGTTCTGGTGCCTGACATAG 57.659 47.619 0.00 0.00 0.00 2.23
2331 2602 9.696572 TCTATAGAACTACATACAAGGTTCTGT 57.303 33.333 14.78 11.55 45.05 3.41
2557 2846 9.810545 AAGTGCAAGCTTATTTTGTTAGTTTTA 57.189 25.926 0.00 0.00 0.00 1.52
2834 3130 2.511218 ACTTGGGACATGAGCATGGTAT 59.489 45.455 14.35 0.00 42.91 2.73
2835 3131 3.716353 ACTTGGGACATGAGCATGGTATA 59.284 43.478 14.35 0.00 42.91 1.47
2920 3216 5.736951 ATATCTAGGGCTTAAGACAGCAG 57.263 43.478 11.28 3.74 42.10 4.24
3080 3378 4.787551 TCCTTTTCTCAGCCAGTTTGTTA 58.212 39.130 0.00 0.00 0.00 2.41
3101 3399 2.755650 ACTTTGCTGACTTGTAGGACG 58.244 47.619 0.00 0.00 0.00 4.79
3124 3422 4.808324 GCCATCATGACCATGTCCATGATA 60.808 45.833 26.21 11.51 41.20 2.15
3135 3433 4.137116 TGTCCATGATACAGCTGTTACC 57.863 45.455 27.06 14.57 0.00 2.85
3153 3451 7.041644 GCTGTTACCAGTGTAAGTATTGTTTCA 60.042 37.037 0.00 0.00 41.02 2.69
3160 3458 7.106239 CAGTGTAAGTATTGTTTCAGAGGGAT 58.894 38.462 0.00 0.00 0.00 3.85
3189 3487 6.639563 TGATCTTGATGAGGTAAACGAATGA 58.360 36.000 0.00 0.00 0.00 2.57
3283 3584 8.969121 TTATCACTAATGTGCAATGTCTTTTG 57.031 30.769 0.00 0.00 43.49 2.44
3316 3617 0.248843 GGCTGGAGAGACTGGTTGAG 59.751 60.000 0.00 0.00 0.00 3.02
3331 3632 2.355209 GGTTGAGGAGAAAGGCGAAGAT 60.355 50.000 0.00 0.00 0.00 2.40
3395 3696 1.329599 GACGCTTCGTGTTTCAGGTTT 59.670 47.619 0.00 0.00 41.37 3.27
3465 3769 4.522022 GCTATGCTATCCCTTTGCTTGAAT 59.478 41.667 0.00 0.00 0.00 2.57
3500 3804 3.243737 TGTGATCAGAGCTACGTGTTGTT 60.244 43.478 0.00 0.00 0.00 2.83
3505 3809 4.795268 TCAGAGCTACGTGTTGTTCTAAG 58.205 43.478 0.00 0.00 0.00 2.18
3521 3825 7.765695 TGTTCTAAGCTTTTGATCATCCTTT 57.234 32.000 3.20 0.00 0.00 3.11
3530 3834 2.513753 TGATCATCCTTTTGTTGCCGT 58.486 42.857 0.00 0.00 0.00 5.68
3586 3906 2.484264 GCCCGTTCTAATGTATGCCATC 59.516 50.000 0.00 0.00 31.75 3.51
3588 3908 3.244561 CCCGTTCTAATGTATGCCATCCT 60.245 47.826 0.00 0.00 31.75 3.24
3589 3909 3.748048 CCGTTCTAATGTATGCCATCCTG 59.252 47.826 0.00 0.00 31.75 3.86
3590 3910 3.187227 CGTTCTAATGTATGCCATCCTGC 59.813 47.826 0.00 0.00 31.75 4.85
3591 3911 4.392940 GTTCTAATGTATGCCATCCTGCT 58.607 43.478 0.00 0.00 31.75 4.24
3592 3912 4.011966 TCTAATGTATGCCATCCTGCTG 57.988 45.455 0.00 0.00 31.75 4.41
3593 3913 1.325355 AATGTATGCCATCCTGCTGC 58.675 50.000 0.00 0.00 31.75 5.25
3594 3914 0.477204 ATGTATGCCATCCTGCTGCT 59.523 50.000 0.00 0.00 0.00 4.24
3595 3915 1.130777 TGTATGCCATCCTGCTGCTA 58.869 50.000 0.00 0.00 0.00 3.49
3596 3916 1.490069 TGTATGCCATCCTGCTGCTAA 59.510 47.619 0.00 0.00 0.00 3.09
3597 3917 1.876156 GTATGCCATCCTGCTGCTAAC 59.124 52.381 0.00 0.00 0.00 2.34
3598 3918 0.549950 ATGCCATCCTGCTGCTAACT 59.450 50.000 0.00 0.00 0.00 2.24
3599 3919 0.107508 TGCCATCCTGCTGCTAACTC 60.108 55.000 0.00 0.00 0.00 3.01
3600 3920 0.817229 GCCATCCTGCTGCTAACTCC 60.817 60.000 0.00 0.00 0.00 3.85
3601 3921 0.835941 CCATCCTGCTGCTAACTCCT 59.164 55.000 0.00 0.00 0.00 3.69
3602 3922 2.042464 CCATCCTGCTGCTAACTCCTA 58.958 52.381 0.00 0.00 0.00 2.94
3603 3923 2.224161 CCATCCTGCTGCTAACTCCTAC 60.224 54.545 0.00 0.00 0.00 3.18
3604 3924 2.534042 TCCTGCTGCTAACTCCTACT 57.466 50.000 0.00 0.00 0.00 2.57
3618 3938 1.017387 CCTACTCGAAATTGCAGGGC 58.983 55.000 0.00 0.00 0.00 5.19
3716 4036 0.462759 GGCAGGAATCTGGACGAAGG 60.463 60.000 0.00 0.00 41.19 3.46
3795 4115 4.771114 TTATCTCATTGGGATCGTGGTT 57.229 40.909 1.30 0.00 0.00 3.67
3797 4117 1.905894 TCTCATTGGGATCGTGGTTGA 59.094 47.619 0.00 0.00 0.00 3.18
3807 4127 0.033504 TCGTGGTTGAGGCTGAGAAC 59.966 55.000 0.00 0.00 0.00 3.01
3813 4133 2.597520 GTTGAGGCTGAGAACGACTAC 58.402 52.381 0.00 0.00 0.00 2.73
3825 4147 5.854866 TGAGAACGACTACACAAGTAAATCG 59.145 40.000 0.00 0.00 41.30 3.34
3838 4160 1.370587 TAAATCGGGCGAAAAGGGCG 61.371 55.000 0.00 0.00 0.00 6.13
3855 4177 1.221840 CGAGTGCAAGGCCCTATGT 59.778 57.895 0.00 0.00 0.00 2.29
3880 4202 3.902881 TTTTGGTGTTGATGTTTGCCT 57.097 38.095 0.00 0.00 0.00 4.75
3882 4204 2.064434 TGGTGTTGATGTTTGCCTCA 57.936 45.000 0.00 0.00 0.00 3.86
3916 4238 6.656270 TGAGAAACCGAGTAGTGTATCTTGTA 59.344 38.462 0.00 0.00 0.00 2.41
3917 4239 6.850555 AGAAACCGAGTAGTGTATCTTGTAC 58.149 40.000 0.00 0.00 0.00 2.90
3918 4240 6.658391 AGAAACCGAGTAGTGTATCTTGTACT 59.342 38.462 0.00 0.00 0.00 2.73
3919 4241 7.826252 AGAAACCGAGTAGTGTATCTTGTACTA 59.174 37.037 0.00 0.00 0.00 1.82
3941 4263 6.842807 ACTAGACTAGGCTAGAAGTAGAGAGT 59.157 42.308 34.78 11.75 40.20 3.24
3959 4281 3.513912 AGAGTCGAATTGTGTGGTATCCA 59.486 43.478 0.00 0.00 0.00 3.41
3979 4301 6.312141 TCCATGTCTTGATGAGAACCATAA 57.688 37.500 0.00 0.00 35.79 1.90
3988 4310 6.239217 TGATGAGAACCATAACTGTATGCT 57.761 37.500 0.00 0.00 36.53 3.79
3995 4317 6.594159 AGAACCATAACTGTATGCTGTTGTAC 59.406 38.462 14.74 0.00 36.53 2.90
4013 4335 9.988350 CTGTTGTACTTTTCTTGCGATTTATAT 57.012 29.630 0.00 0.00 0.00 0.86
4017 4339 9.826574 TGTACTTTTCTTGCGATTTATATAGGT 57.173 29.630 0.00 0.00 0.00 3.08
4034 4356 7.660030 ATATAGGTCAAAAAGGAAACCATGG 57.340 36.000 11.19 11.19 34.09 3.66
4035 4357 3.653164 AGGTCAAAAAGGAAACCATGGT 58.347 40.909 13.00 13.00 34.09 3.55
4066 4388 6.894654 TCCTGTGATGAAACTAGAGAGAGAAT 59.105 38.462 0.00 0.00 0.00 2.40
4091 4413 1.903404 TGTCAGCTCAGCCGTCTGA 60.903 57.895 0.00 0.00 46.43 3.27
4106 4428 4.673580 GCCGTCTGAAACTCTGAATACGTA 60.674 45.833 0.00 0.00 0.00 3.57
4152 4474 2.230992 TCATTCTGTTGGAATTTGGCCG 59.769 45.455 0.00 0.00 42.20 6.13
4157 4479 0.671251 GTTGGAATTTGGCCGTGTGA 59.329 50.000 0.00 0.00 0.00 3.58
4179 4501 3.264964 ACCGGCTCTATTTACCTCCAAAA 59.735 43.478 0.00 0.00 0.00 2.44
4183 4505 5.469084 CGGCTCTATTTACCTCCAAAATACC 59.531 44.000 0.00 0.00 0.00 2.73
4225 4547 0.761802 GGACCCTCTTATCTGGCTGG 59.238 60.000 0.00 0.00 0.00 4.85
4230 4552 1.576356 CTCTTATCTGGCTGGCGTTC 58.424 55.000 0.00 0.00 0.00 3.95
4231 4553 0.179111 TCTTATCTGGCTGGCGTTCG 60.179 55.000 0.00 0.00 0.00 3.95
4234 4556 2.906182 TATCTGGCTGGCGTTCGCTG 62.906 60.000 16.40 10.81 0.00 5.18
4238 4560 3.782244 GCTGGCGTTCGCTGTGAG 61.782 66.667 16.40 8.81 0.00 3.51
4245 4567 2.525629 TTCGCTGTGAGGGGGTGA 60.526 61.111 0.00 0.00 0.00 4.02
4253 4575 0.539438 GTGAGGGGGTGACATTTGCA 60.539 55.000 0.00 0.00 0.00 4.08
4255 4577 1.337118 GAGGGGGTGACATTTGCAAA 58.663 50.000 15.44 15.44 0.00 3.68
4261 4583 2.933260 GGGTGACATTTGCAAACGTTTT 59.067 40.909 15.41 0.00 0.00 2.43
4265 4587 5.460419 GGTGACATTTGCAAACGTTTTCATA 59.540 36.000 15.41 9.95 0.00 2.15
4266 4588 6.345723 GGTGACATTTGCAAACGTTTTCATAG 60.346 38.462 15.41 9.42 0.00 2.23
4267 4589 5.174761 TGACATTTGCAAACGTTTTCATAGC 59.825 36.000 15.41 12.91 0.00 2.97
4276 4598 6.129194 GCAAACGTTTTCATAGCAGTTTTAGG 60.129 38.462 11.66 0.00 30.56 2.69
4278 4600 5.997385 ACGTTTTCATAGCAGTTTTAGGTG 58.003 37.500 0.00 0.00 0.00 4.00
4282 4604 7.307514 CGTTTTCATAGCAGTTTTAGGTGTGTA 60.308 37.037 0.00 0.00 0.00 2.90
4285 4607 6.707290 TCATAGCAGTTTTAGGTGTGTATGT 58.293 36.000 0.00 0.00 0.00 2.29
4289 4611 4.320202 GCAGTTTTAGGTGTGTATGTGGTG 60.320 45.833 0.00 0.00 0.00 4.17
4290 4612 5.060506 CAGTTTTAGGTGTGTATGTGGTGA 58.939 41.667 0.00 0.00 0.00 4.02
4291 4613 5.049680 CAGTTTTAGGTGTGTATGTGGTGAC 60.050 44.000 0.00 0.00 0.00 3.67
4292 4614 3.306917 TTAGGTGTGTATGTGGTGACG 57.693 47.619 0.00 0.00 0.00 4.35
4294 4616 0.034337 GGTGTGTATGTGGTGACGGT 59.966 55.000 0.00 0.00 0.00 4.83
4295 4617 1.541670 GGTGTGTATGTGGTGACGGTT 60.542 52.381 0.00 0.00 0.00 4.44
4296 4618 1.796459 GTGTGTATGTGGTGACGGTTC 59.204 52.381 0.00 0.00 0.00 3.62
4299 4621 1.695242 TGTATGTGGTGACGGTTCCTT 59.305 47.619 0.00 0.00 0.00 3.36
4300 4622 2.289195 TGTATGTGGTGACGGTTCCTTC 60.289 50.000 0.00 0.00 0.00 3.46
4301 4623 0.762418 ATGTGGTGACGGTTCCTTCA 59.238 50.000 0.00 0.00 0.00 3.02
4302 4624 0.105964 TGTGGTGACGGTTCCTTCAG 59.894 55.000 0.00 0.00 0.00 3.02
4303 4625 0.391597 GTGGTGACGGTTCCTTCAGA 59.608 55.000 0.00 0.00 0.00 3.27
4304 4626 0.679505 TGGTGACGGTTCCTTCAGAG 59.320 55.000 0.00 0.00 0.00 3.35
4305 4627 0.670854 GGTGACGGTTCCTTCAGAGC 60.671 60.000 0.00 0.00 0.00 4.09
4306 4628 1.009389 GTGACGGTTCCTTCAGAGCG 61.009 60.000 0.00 0.00 41.99 5.03
4307 4629 1.176619 TGACGGTTCCTTCAGAGCGA 61.177 55.000 1.82 0.00 39.78 4.93
4308 4630 0.733223 GACGGTTCCTTCAGAGCGAC 60.733 60.000 1.82 0.00 39.78 5.19
4313 4635 2.166664 GGTTCCTTCAGAGCGACATAGT 59.833 50.000 0.00 0.00 0.00 2.12
4314 4636 3.440228 GTTCCTTCAGAGCGACATAGTC 58.560 50.000 0.00 0.00 0.00 2.59
4315 4637 2.025155 TCCTTCAGAGCGACATAGTCC 58.975 52.381 0.00 0.00 0.00 3.85
4316 4638 2.028130 CCTTCAGAGCGACATAGTCCT 58.972 52.381 0.00 0.00 0.00 3.85
4317 4639 2.034053 CCTTCAGAGCGACATAGTCCTC 59.966 54.545 0.00 0.00 33.36 3.71
4318 4640 1.681538 TCAGAGCGACATAGTCCTCC 58.318 55.000 10.15 0.00 33.51 4.30
4319 4641 1.213182 TCAGAGCGACATAGTCCTCCT 59.787 52.381 10.15 0.00 33.51 3.69
4320 4642 1.606668 CAGAGCGACATAGTCCTCCTC 59.393 57.143 10.15 5.88 33.51 3.71
4321 4643 0.955905 GAGCGACATAGTCCTCCTCC 59.044 60.000 0.00 0.00 29.80 4.30
4322 4644 0.468400 AGCGACATAGTCCTCCTCCC 60.468 60.000 0.00 0.00 0.00 4.30
4323 4645 1.465200 GCGACATAGTCCTCCTCCCC 61.465 65.000 0.00 0.00 0.00 4.81
4324 4646 0.106167 CGACATAGTCCTCCTCCCCA 60.106 60.000 0.00 0.00 0.00 4.96
4325 4647 1.688311 CGACATAGTCCTCCTCCCCAA 60.688 57.143 0.00 0.00 0.00 4.12
4326 4648 2.478292 GACATAGTCCTCCTCCCCAAA 58.522 52.381 0.00 0.00 0.00 3.28
4327 4649 2.844348 GACATAGTCCTCCTCCCCAAAA 59.156 50.000 0.00 0.00 0.00 2.44
4328 4650 3.265489 ACATAGTCCTCCTCCCCAAAAA 58.735 45.455 0.00 0.00 0.00 1.94
4329 4651 3.858638 ACATAGTCCTCCTCCCCAAAAAT 59.141 43.478 0.00 0.00 0.00 1.82
4330 4652 4.079730 ACATAGTCCTCCTCCCCAAAAATC 60.080 45.833 0.00 0.00 0.00 2.17
4331 4653 1.641192 AGTCCTCCTCCCCAAAAATCC 59.359 52.381 0.00 0.00 0.00 3.01
4332 4654 1.007607 TCCTCCTCCCCAAAAATCCC 58.992 55.000 0.00 0.00 0.00 3.85
4333 4655 0.709992 CCTCCTCCCCAAAAATCCCA 59.290 55.000 0.00 0.00 0.00 4.37
4334 4656 1.619704 CCTCCTCCCCAAAAATCCCAC 60.620 57.143 0.00 0.00 0.00 4.61
4335 4657 0.039035 TCCTCCCCAAAAATCCCACG 59.961 55.000 0.00 0.00 0.00 4.94
4336 4658 0.251608 CCTCCCCAAAAATCCCACGT 60.252 55.000 0.00 0.00 0.00 4.49
4337 4659 1.173913 CTCCCCAAAAATCCCACGTC 58.826 55.000 0.00 0.00 0.00 4.34
4338 4660 0.606944 TCCCCAAAAATCCCACGTCG 60.607 55.000 0.00 0.00 0.00 5.12
4339 4661 1.211709 CCCAAAAATCCCACGTCGC 59.788 57.895 0.00 0.00 0.00 5.19
4340 4662 1.241315 CCCAAAAATCCCACGTCGCT 61.241 55.000 0.00 0.00 0.00 4.93
4341 4663 0.168128 CCAAAAATCCCACGTCGCTC 59.832 55.000 0.00 0.00 0.00 5.03
4342 4664 0.168128 CAAAAATCCCACGTCGCTCC 59.832 55.000 0.00 0.00 0.00 4.70
4343 4665 1.296056 AAAAATCCCACGTCGCTCCG 61.296 55.000 0.00 0.00 0.00 4.63
4344 4666 2.162338 AAAATCCCACGTCGCTCCGA 62.162 55.000 0.00 0.00 0.00 4.55
4345 4667 2.558554 AAATCCCACGTCGCTCCGAG 62.559 60.000 0.00 0.00 36.23 4.63
4346 4668 3.989838 ATCCCACGTCGCTCCGAGA 62.990 63.158 0.00 0.00 36.23 4.04
4347 4669 3.744719 CCCACGTCGCTCCGAGAA 61.745 66.667 0.00 0.00 36.23 2.87
4348 4670 2.257371 CCACGTCGCTCCGAGAAA 59.743 61.111 0.00 0.00 36.23 2.52
4349 4671 1.372499 CCACGTCGCTCCGAGAAAA 60.372 57.895 0.00 0.00 36.23 2.29
4350 4672 1.615107 CCACGTCGCTCCGAGAAAAC 61.615 60.000 0.00 0.00 36.23 2.43
4351 4673 0.937699 CACGTCGCTCCGAGAAAACA 60.938 55.000 0.00 0.00 36.23 2.83
4352 4674 0.663568 ACGTCGCTCCGAGAAAACAG 60.664 55.000 0.00 0.00 36.23 3.16
4353 4675 1.782181 GTCGCTCCGAGAAAACAGC 59.218 57.895 0.00 0.00 36.23 4.40
4354 4676 1.374252 TCGCTCCGAGAAAACAGCC 60.374 57.895 0.00 0.00 0.00 4.85
4355 4677 1.667830 CGCTCCGAGAAAACAGCCA 60.668 57.895 0.00 0.00 0.00 4.75
4356 4678 1.869690 GCTCCGAGAAAACAGCCAC 59.130 57.895 0.00 0.00 0.00 5.01
4357 4679 1.578206 GCTCCGAGAAAACAGCCACC 61.578 60.000 0.00 0.00 0.00 4.61
4360 4682 0.955919 CCGAGAAAACAGCCACCTCC 60.956 60.000 0.00 0.00 0.00 4.30
4362 4684 0.955919 GAGAAAACAGCCACCTCCGG 60.956 60.000 0.00 0.00 0.00 5.14
4374 4696 3.069289 CCACCTCCGGTACAACTAAAAC 58.931 50.000 0.00 0.00 32.11 2.43
4375 4697 3.069289 CACCTCCGGTACAACTAAAACC 58.931 50.000 0.00 0.00 32.11 3.27
4392 4714 5.402464 AAAACCGCTAGCAAAAACATTTG 57.598 34.783 16.45 0.00 35.15 2.32
4397 4719 5.177327 ACCGCTAGCAAAAACATTTGAAATG 59.823 36.000 16.45 15.82 33.95 2.32
4398 4720 5.074791 CGCTAGCAAAAACATTTGAAATGC 58.925 37.500 17.19 4.40 33.95 3.56
4400 4722 5.049543 GCTAGCAAAAACATTTGAAATGCCA 60.050 36.000 17.19 0.00 33.95 4.92
4401 4723 6.348704 GCTAGCAAAAACATTTGAAATGCCAT 60.349 34.615 17.19 2.09 33.95 4.40
4402 4724 5.764131 AGCAAAAACATTTGAAATGCCATG 58.236 33.333 17.19 12.01 33.95 3.66
4403 4725 4.383351 GCAAAAACATTTGAAATGCCATGC 59.617 37.500 17.19 16.95 33.95 4.06
4404 4726 5.764131 CAAAAACATTTGAAATGCCATGCT 58.236 33.333 17.19 0.00 33.95 3.79
4405 4727 5.616488 AAAACATTTGAAATGCCATGCTC 57.384 34.783 17.19 0.00 0.00 4.26
4406 4728 4.546829 AACATTTGAAATGCCATGCTCT 57.453 36.364 17.19 0.00 0.00 4.09
4407 4729 4.119442 ACATTTGAAATGCCATGCTCTC 57.881 40.909 17.19 0.00 0.00 3.20
4408 4730 3.118884 ACATTTGAAATGCCATGCTCTCC 60.119 43.478 17.19 0.00 0.00 3.71
4409 4731 1.477553 TTGAAATGCCATGCTCTCCC 58.522 50.000 0.00 0.00 0.00 4.30
4410 4732 0.332293 TGAAATGCCATGCTCTCCCA 59.668 50.000 0.00 0.00 0.00 4.37
4411 4733 1.272592 TGAAATGCCATGCTCTCCCAA 60.273 47.619 0.00 0.00 0.00 4.12
4412 4734 1.135721 GAAATGCCATGCTCTCCCAAC 59.864 52.381 0.00 0.00 0.00 3.77
4413 4735 1.033746 AATGCCATGCTCTCCCAACG 61.034 55.000 0.00 0.00 0.00 4.10
4414 4736 1.913951 ATGCCATGCTCTCCCAACGA 61.914 55.000 0.00 0.00 0.00 3.85
4415 4737 1.377202 GCCATGCTCTCCCAACGAA 60.377 57.895 0.00 0.00 0.00 3.85
4416 4738 1.648467 GCCATGCTCTCCCAACGAAC 61.648 60.000 0.00 0.00 0.00 3.95
4417 4739 1.361668 CCATGCTCTCCCAACGAACG 61.362 60.000 0.00 0.00 0.00 3.95
4418 4740 0.670546 CATGCTCTCCCAACGAACGT 60.671 55.000 0.00 0.00 0.00 3.99
4425 4747 1.890041 CCCAACGAACGTCAGCCAA 60.890 57.895 0.00 0.00 0.00 4.52
4436 4758 5.163854 CGAACGTCAGCCAAATAAGATTTCT 60.164 40.000 0.00 0.00 0.00 2.52
4437 4759 5.551760 ACGTCAGCCAAATAAGATTTCTG 57.448 39.130 0.00 0.00 0.00 3.02
4439 4761 5.705441 ACGTCAGCCAAATAAGATTTCTGAA 59.295 36.000 5.41 0.00 31.89 3.02
4440 4762 6.206634 ACGTCAGCCAAATAAGATTTCTGAAA 59.793 34.615 5.15 5.15 31.89 2.69
4441 4763 7.083858 CGTCAGCCAAATAAGATTTCTGAAAA 58.916 34.615 6.95 0.00 31.89 2.29
4470 4792 0.310543 TCACATGAACTTTGCCGTGC 59.689 50.000 0.00 0.00 0.00 5.34
4482 4804 1.372499 GCCGTGCGACAGACTTGTA 60.372 57.895 0.00 0.00 37.76 2.41
4485 4807 0.776451 CGTGCGACAGACTTGTACAC 59.224 55.000 0.00 4.22 39.39 2.90
4490 4812 2.668834 GCGACAGACTTGTACACCTCTC 60.669 54.545 0.00 0.00 37.76 3.20
4491 4813 2.095161 CGACAGACTTGTACACCTCTCC 60.095 54.545 0.00 0.00 37.76 3.71
4495 4817 0.830444 ACTTGTACACCTCTCCGCCA 60.830 55.000 0.00 0.00 0.00 5.69
4501 4823 0.251653 ACACCTCTCCGCCAGAAGTA 60.252 55.000 0.00 0.00 0.00 2.24
4505 4827 1.464734 CTCTCCGCCAGAAGTAGTCA 58.535 55.000 0.00 0.00 0.00 3.41
4517 4839 4.496183 CAGAAGTAGTCACGCGTTTCTATC 59.504 45.833 18.25 13.90 0.00 2.08
4526 4849 0.850856 GCGTTTCTATCCGCCTAACG 59.149 55.000 0.00 0.00 43.96 3.18
4540 4863 2.097791 GCCTAACGAACACACCACAAAA 59.902 45.455 0.00 0.00 0.00 2.44
4541 4864 3.243267 GCCTAACGAACACACCACAAAAT 60.243 43.478 0.00 0.00 0.00 1.82
4543 4866 2.748461 ACGAACACACCACAAAATCG 57.252 45.000 0.00 0.00 35.16 3.34
4562 4886 3.820689 TCGAAAACCGAGATTTTGCATG 58.179 40.909 0.00 0.00 43.23 4.06
4580 4904 6.432607 TGCATGAATTTTGCAAGAAAACAA 57.567 29.167 12.91 0.00 46.48 2.83
4581 4905 7.028926 TGCATGAATTTTGCAAGAAAACAAT 57.971 28.000 12.91 0.00 46.48 2.71
4582 4906 8.151141 TGCATGAATTTTGCAAGAAAACAATA 57.849 26.923 12.91 0.00 46.48 1.90
4593 4917 8.939201 TGCAAGAAAACAATAAAATTCTGTCA 57.061 26.923 0.00 0.00 32.72 3.58
4595 4919 7.998212 GCAAGAAAACAATAAAATTCTGTCACG 59.002 33.333 0.00 0.00 32.72 4.35
4596 4920 9.232082 CAAGAAAACAATAAAATTCTGTCACGA 57.768 29.630 0.00 0.00 32.72 4.35
4597 4921 9.450807 AAGAAAACAATAAAATTCTGTCACGAG 57.549 29.630 0.00 0.00 32.72 4.18
4598 4922 8.836413 AGAAAACAATAAAATTCTGTCACGAGA 58.164 29.630 0.00 0.00 31.25 4.04
4599 4923 9.612620 GAAAACAATAAAATTCTGTCACGAGAT 57.387 29.630 0.00 0.00 0.00 2.75
4600 4924 9.965824 AAAACAATAAAATTCTGTCACGAGATT 57.034 25.926 0.00 0.00 0.00 2.40
4601 4925 9.965824 AAACAATAAAATTCTGTCACGAGATTT 57.034 25.926 0.00 0.00 0.00 2.17
4602 4926 8.955061 ACAATAAAATTCTGTCACGAGATTTG 57.045 30.769 0.00 0.00 0.00 2.32
4603 4927 8.783093 ACAATAAAATTCTGTCACGAGATTTGA 58.217 29.630 0.00 0.00 0.00 2.69
4604 4928 9.270576 CAATAAAATTCTGTCACGAGATTTGAG 57.729 33.333 0.00 0.00 0.00 3.02
4605 4929 8.777865 ATAAAATTCTGTCACGAGATTTGAGA 57.222 30.769 0.00 0.00 0.00 3.27
4606 4930 7.496529 AAAATTCTGTCACGAGATTTGAGAA 57.503 32.000 0.00 0.00 0.00 2.87
4608 4932 6.718454 ATTCTGTCACGAGATTTGAGAAAG 57.282 37.500 0.00 0.00 0.00 2.62
4656 4982 0.320073 AACCGAATTCCGCGAGACAA 60.320 50.000 8.23 0.00 36.84 3.18
4657 4983 0.108329 ACCGAATTCCGCGAGACAAT 60.108 50.000 8.23 0.00 36.84 2.71
4672 4998 5.335827 GAGACAATTGCTCGTATGGAATC 57.664 43.478 5.05 0.00 0.00 2.52
4676 5002 2.325583 TTGCTCGTATGGAATCCCAC 57.674 50.000 0.00 0.00 46.98 4.61
4677 5003 1.199615 TGCTCGTATGGAATCCCACA 58.800 50.000 0.00 0.00 46.98 4.17
4692 5018 0.599558 CCACACGGGAGAACGAGTAA 59.400 55.000 0.00 0.00 40.01 2.24
4694 5020 2.424601 CCACACGGGAGAACGAGTAATA 59.575 50.000 0.00 0.00 40.01 0.98
4696 5022 2.096496 ACACGGGAGAACGAGTAATACG 59.904 50.000 0.00 0.00 35.97 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
106 107 6.798482 ACATTTGAATGTCGTGCATTATCAT 58.202 32.000 3.60 0.00 46.10 2.45
127 128 3.883489 TCATCAACGAGGACGAGATACAT 59.117 43.478 0.00 0.00 42.66 2.29
142 232 2.016318 TGATCCGCCAACATCATCAAC 58.984 47.619 0.00 0.00 0.00 3.18
547 724 1.686587 CCTTTTTCTGCCGAACCCTTT 59.313 47.619 0.00 0.00 0.00 3.11
561 738 1.064952 CACGACGCACTTTCCCTTTTT 59.935 47.619 0.00 0.00 0.00 1.94
633 812 6.749036 ATAGAGGGTTCTGGTTAATCGAAT 57.251 37.500 0.00 0.00 34.79 3.34
660 892 1.203174 CCTGGACCCCCAATTCAAACT 60.203 52.381 0.00 0.00 42.98 2.66
699 932 1.349688 ACCAAATAAGCGTCCAGTGGA 59.650 47.619 8.12 8.12 0.00 4.02
725 958 1.539065 CCTCATACGTCCAGGCATGTC 60.539 57.143 0.00 0.00 0.00 3.06
868 1104 9.594478 CCACACTTTTTAAACCTCTTGTATTTT 57.406 29.630 0.00 0.00 0.00 1.82
869 1105 7.709182 GCCACACTTTTTAAACCTCTTGTATTT 59.291 33.333 0.00 0.00 0.00 1.40
870 1106 7.147811 TGCCACACTTTTTAAACCTCTTGTATT 60.148 33.333 0.00 0.00 0.00 1.89
871 1107 6.322712 TGCCACACTTTTTAAACCTCTTGTAT 59.677 34.615 0.00 0.00 0.00 2.29
872 1108 5.652891 TGCCACACTTTTTAAACCTCTTGTA 59.347 36.000 0.00 0.00 0.00 2.41
873 1109 4.464597 TGCCACACTTTTTAAACCTCTTGT 59.535 37.500 0.00 0.00 0.00 3.16
874 1110 5.004922 TGCCACACTTTTTAAACCTCTTG 57.995 39.130 0.00 0.00 0.00 3.02
875 1111 5.669164 TTGCCACACTTTTTAAACCTCTT 57.331 34.783 0.00 0.00 0.00 2.85
876 1112 5.420739 TCTTTGCCACACTTTTTAAACCTCT 59.579 36.000 0.00 0.00 0.00 3.69
877 1113 5.656480 TCTTTGCCACACTTTTTAAACCTC 58.344 37.500 0.00 0.00 0.00 3.85
878 1114 5.669164 TCTTTGCCACACTTTTTAAACCT 57.331 34.783 0.00 0.00 0.00 3.50
879 1115 5.277297 GCATCTTTGCCACACTTTTTAAACC 60.277 40.000 0.00 0.00 43.38 3.27
880 1116 5.737353 GCATCTTTGCCACACTTTTTAAAC 58.263 37.500 0.00 0.00 43.38 2.01
881 1117 5.982465 GCATCTTTGCCACACTTTTTAAA 57.018 34.783 0.00 0.00 43.38 1.52
895 1131 2.157738 GCAGGGCTATAGGCATCTTTG 58.842 52.381 25.90 15.95 44.01 2.77
896 1132 1.074566 GGCAGGGCTATAGGCATCTTT 59.925 52.381 25.90 4.92 44.01 2.52
897 1133 0.695347 GGCAGGGCTATAGGCATCTT 59.305 55.000 25.90 7.24 44.01 2.40
898 1134 1.204113 GGGCAGGGCTATAGGCATCT 61.204 60.000 25.90 13.10 44.01 2.90
899 1135 1.301293 GGGCAGGGCTATAGGCATC 59.699 63.158 25.90 14.14 44.01 3.91
900 1136 2.234296 GGGGCAGGGCTATAGGCAT 61.234 63.158 25.90 17.93 44.01 4.40
901 1137 2.854032 GGGGCAGGGCTATAGGCA 60.854 66.667 25.90 0.00 44.01 4.75
902 1138 2.530406 AGGGGCAGGGCTATAGGC 60.530 66.667 17.73 17.73 40.90 3.93
903 1139 2.900106 GCAGGGGCAGGGCTATAGG 61.900 68.421 1.04 0.00 40.72 2.57
904 1140 1.835927 GAGCAGGGGCAGGGCTATAG 61.836 65.000 0.00 0.00 44.61 1.31
905 1141 1.843376 GAGCAGGGGCAGGGCTATA 60.843 63.158 0.00 0.00 44.61 1.31
906 1142 2.332258 TAGAGCAGGGGCAGGGCTAT 62.332 60.000 0.00 0.00 44.61 2.97
907 1143 2.954254 CTAGAGCAGGGGCAGGGCTA 62.954 65.000 0.00 0.00 44.61 3.93
908 1144 4.421554 TAGAGCAGGGGCAGGGCT 62.422 66.667 0.00 0.00 44.61 5.19
909 1145 3.871395 CTAGAGCAGGGGCAGGGC 61.871 72.222 0.00 0.00 44.61 5.19
910 1146 2.366167 ACTAGAGCAGGGGCAGGG 60.366 66.667 0.00 0.00 44.61 4.45
911 1147 2.790791 CGACTAGAGCAGGGGCAGG 61.791 68.421 0.00 0.00 44.61 4.85
912 1148 1.754621 TCGACTAGAGCAGGGGCAG 60.755 63.158 0.00 0.00 44.61 4.85
913 1149 2.052690 GTCGACTAGAGCAGGGGCA 61.053 63.158 8.70 0.00 44.61 5.36
914 1150 2.809010 GTCGACTAGAGCAGGGGC 59.191 66.667 8.70 0.00 41.61 5.80
915 1151 1.716826 GACGTCGACTAGAGCAGGGG 61.717 65.000 14.70 0.00 0.00 4.79
916 1152 0.745128 AGACGTCGACTAGAGCAGGG 60.745 60.000 14.70 0.00 0.00 4.45
917 1153 0.653636 GAGACGTCGACTAGAGCAGG 59.346 60.000 14.70 0.00 0.00 4.85
918 1154 0.653636 GGAGACGTCGACTAGAGCAG 59.346 60.000 14.70 0.00 0.00 4.24
919 1155 0.036671 TGGAGACGTCGACTAGAGCA 60.037 55.000 14.70 0.00 0.00 4.26
920 1156 0.374410 GTGGAGACGTCGACTAGAGC 59.626 60.000 14.70 0.00 0.00 4.09
921 1157 0.646381 CGTGGAGACGTCGACTAGAG 59.354 60.000 14.70 0.00 40.91 2.43
922 1158 0.244721 TCGTGGAGACGTCGACTAGA 59.755 55.000 14.70 5.97 46.20 2.43
923 1159 1.073964 TTCGTGGAGACGTCGACTAG 58.926 55.000 14.70 0.96 46.20 2.57
924 1160 1.195448 GTTTCGTGGAGACGTCGACTA 59.805 52.381 14.70 3.83 46.20 2.59
925 1161 0.040603 GTTTCGTGGAGACGTCGACT 60.041 55.000 14.70 0.00 46.20 4.18
926 1162 1.325904 CGTTTCGTGGAGACGTCGAC 61.326 60.000 10.46 5.18 46.20 4.20
927 1163 1.082561 CGTTTCGTGGAGACGTCGA 60.083 57.895 10.46 0.29 46.20 4.20
928 1164 3.433748 CGTTTCGTGGAGACGTCG 58.566 61.111 10.46 0.00 46.20 5.12
936 1172 1.566077 GGGTTTCGACGTTTCGTGG 59.434 57.895 0.00 0.00 46.01 4.94
943 1179 1.589803 CTTTTCTGGGGTTTCGACGT 58.410 50.000 0.00 0.00 0.00 4.34
989 1225 2.423446 CCGCCATACCTGAGCTCC 59.577 66.667 12.15 0.00 0.00 4.70
993 1229 2.590007 GCAGCCGCCATACCTGAG 60.590 66.667 0.00 0.00 0.00 3.35
1063 1305 2.038007 AGGGCGCTGGAGAAGAGA 59.962 61.111 7.64 0.00 0.00 3.10
1074 1316 1.524849 GAAGGAATGGAGAGGGCGC 60.525 63.158 0.00 0.00 0.00 6.53
1084 1326 3.878103 CTGAAGCATCTGGAGAAGGAATG 59.122 47.826 0.00 0.00 0.00 2.67
1137 1388 4.821589 GAGAGGTGCCGCGGGAAG 62.822 72.222 29.38 0.38 0.00 3.46
1238 1489 1.275573 GGAAAGGTGAGTAAGCGAGGT 59.724 52.381 0.00 0.00 0.00 3.85
1250 1506 3.821033 CTGACTTTACAAGGGGAAAGGTG 59.179 47.826 4.58 0.00 37.05 4.00
1270 1526 2.492484 ACCGCTCCAACTAGTAAGACTG 59.508 50.000 0.00 0.00 0.00 3.51
1271 1527 2.805194 ACCGCTCCAACTAGTAAGACT 58.195 47.619 0.00 0.00 0.00 3.24
1272 1528 3.066481 CCTACCGCTCCAACTAGTAAGAC 59.934 52.174 0.00 0.00 0.00 3.01
1273 1529 3.285484 CCTACCGCTCCAACTAGTAAGA 58.715 50.000 0.00 0.00 0.00 2.10
1277 1533 1.328430 GGCCTACCGCTCCAACTAGT 61.328 60.000 0.00 0.00 37.74 2.57
1282 1538 1.146359 TCTATAGGCCTACCGCTCCAA 59.854 52.381 16.61 0.00 42.76 3.53
1295 1552 5.626142 TCAGACTAGACAGGCTTCTATAGG 58.374 45.833 0.00 0.00 36.37 2.57
1338 1595 3.070018 ACATTGGTCGAGCAGAAAAGAG 58.930 45.455 17.81 6.45 0.00 2.85
1340 1597 4.690748 TCTTACATTGGTCGAGCAGAAAAG 59.309 41.667 17.81 17.70 0.00 2.27
1342 1599 4.265904 TCTTACATTGGTCGAGCAGAAA 57.734 40.909 17.81 3.44 0.00 2.52
1347 1604 2.128035 CGGATCTTACATTGGTCGAGC 58.872 52.381 7.89 7.89 0.00 5.03
1350 1607 4.119862 ACATTCGGATCTTACATTGGTCG 58.880 43.478 0.00 0.00 0.00 4.79
1356 1613 4.405680 TGAGTGGACATTCGGATCTTACAT 59.594 41.667 0.00 0.00 0.00 2.29
1361 1618 3.465742 CATGAGTGGACATTCGGATCT 57.534 47.619 0.00 0.00 0.00 2.75
1376 1633 0.806868 AACATCAGTTGCGCCATGAG 59.193 50.000 4.18 3.62 36.39 2.90
1378 1635 2.917701 TTAACATCAGTTGCGCCATG 57.082 45.000 4.18 0.23 38.69 3.66
1423 1680 2.532193 CGTACTGTTTTACTGATGCGCG 60.532 50.000 0.00 0.00 0.00 6.86
1424 1681 2.222729 CCGTACTGTTTTACTGATGCGC 60.223 50.000 0.00 0.00 0.00 6.09
1443 1701 2.400158 TTTAAATCCACGCCGGCCG 61.400 57.895 23.46 21.04 44.21 6.13
1444 1702 1.138036 GTTTAAATCCACGCCGGCC 59.862 57.895 23.46 2.84 33.14 6.13
1445 1703 1.138036 GGTTTAAATCCACGCCGGC 59.862 57.895 19.07 19.07 33.14 6.13
1485 1745 7.400439 ACAGATTATTATAGCATCATGGCACT 58.600 34.615 0.00 0.00 35.83 4.40
1486 1746 7.621428 ACAGATTATTATAGCATCATGGCAC 57.379 36.000 0.00 0.00 35.83 5.01
1577 1837 6.457934 GCTGTGATGTTAGAATGTGATTCAGG 60.458 42.308 0.00 0.00 41.71 3.86
1625 1885 5.751028 GGATCTTCAGTTAACCTCATTCTCG 59.249 44.000 0.88 0.00 0.00 4.04
1650 1910 4.795970 AACAAAGTGCTACGAGAAACAG 57.204 40.909 0.00 0.00 0.00 3.16
1658 1918 2.410392 TCACGCATAACAAAGTGCTACG 59.590 45.455 0.00 0.00 39.16 3.51
1660 1920 2.739913 GGTCACGCATAACAAAGTGCTA 59.260 45.455 0.00 0.00 39.16 3.49
1680 1940 9.757859 GCAAAACATAATATTGAACAATGTTGG 57.242 29.630 2.20 9.71 39.88 3.77
1691 1951 4.815846 GGCCCCTTGCAAAACATAATATTG 59.184 41.667 0.00 0.00 43.89 1.90
1692 1952 4.442753 CGGCCCCTTGCAAAACATAATATT 60.443 41.667 0.00 0.00 43.89 1.28
1709 1969 2.668550 GGTGCGAATATCGGCCCC 60.669 66.667 0.00 0.00 40.84 5.80
1711 1971 0.951558 ATTTGGTGCGAATATCGGCC 59.048 50.000 0.00 0.00 40.84 6.13
1712 1972 2.774439 AATTTGGTGCGAATATCGGC 57.226 45.000 1.64 0.00 40.84 5.54
1713 1973 3.498397 AGCTAATTTGGTGCGAATATCGG 59.502 43.478 1.64 0.00 40.84 4.18
1719 1979 2.192664 TGGAGCTAATTTGGTGCGAA 57.807 45.000 6.17 0.00 0.00 4.70
1721 1981 3.508744 AAATGGAGCTAATTTGGTGCG 57.491 42.857 6.15 0.00 0.00 5.34
1726 1986 7.967854 TCGTCATGTTAAAATGGAGCTAATTTG 59.032 33.333 5.78 0.00 0.00 2.32
1731 1991 5.810587 GTCTCGTCATGTTAAAATGGAGCTA 59.189 40.000 5.78 0.00 0.00 3.32
1795 2062 4.422057 TCCACCTCACCAAACTACAGATA 58.578 43.478 0.00 0.00 0.00 1.98
1836 2103 1.217882 CGACGGATGAATGGTTAGCC 58.782 55.000 0.00 0.00 0.00 3.93
1938 2205 5.358922 TCAAATTTGTCTCCCTTTTGCTTG 58.641 37.500 17.47 0.00 0.00 4.01
1950 2217 9.112725 TCAATGACGATATGATCAAATTTGTCT 57.887 29.630 17.47 6.87 0.00 3.41
2057 2325 2.664402 ATGTCAGGCACCAGAACTTT 57.336 45.000 0.00 0.00 0.00 2.66
2065 2333 3.199880 ACATTAGCTATGTCAGGCACC 57.800 47.619 0.00 0.00 44.15 5.01
2078 2346 2.234908 AGACCTGGACAGTGACATTAGC 59.765 50.000 0.00 0.00 0.00 3.09
2093 2361 0.825010 ACCAGGCTTTGCAAGACCTG 60.825 55.000 29.61 29.61 44.91 4.00
2127 2395 6.073058 TCGAGACCAATTCATCAGAACAAAAG 60.073 38.462 0.00 0.00 36.39 2.27
2220 2488 0.389025 CAACCCACCTTGCTTTCACC 59.611 55.000 0.00 0.00 0.00 4.02
2317 2585 7.011295 ACAAATTTTGCAACAGAACCTTGTATG 59.989 33.333 9.04 0.00 0.00 2.39
2331 2602 7.910304 ACGTGCTTAAATAACAAATTTTGCAA 58.090 26.923 9.04 0.00 34.11 4.08
2527 2801 4.620982 ACAAAATAAGCTTGCACTTGACC 58.379 39.130 9.86 0.00 0.00 4.02
2557 2846 2.620115 CCCATTTATGAGCTGCAACGAT 59.380 45.455 1.02 0.00 0.00 3.73
2693 2982 3.118531 ACTCTCAGGATTACAGCCCAAT 58.881 45.455 0.00 0.00 0.00 3.16
2751 3040 5.100344 CAGCCTCAATCCTGCAGATATAT 57.900 43.478 17.39 0.00 33.66 0.86
2752 3041 4.548451 CAGCCTCAATCCTGCAGATATA 57.452 45.455 17.39 0.00 33.66 0.86
2753 3042 3.420300 CAGCCTCAATCCTGCAGATAT 57.580 47.619 17.39 5.41 33.66 1.63
2754 3043 2.924757 CAGCCTCAATCCTGCAGATA 57.075 50.000 17.39 2.75 33.66 1.98
2834 3130 2.367567 GGATACCGGAGCCTGAACATTA 59.632 50.000 9.46 0.00 0.00 1.90
2835 3131 1.141053 GGATACCGGAGCCTGAACATT 59.859 52.381 9.46 0.00 0.00 2.71
2920 3216 5.468540 AAAATCCAAAGGAAGCCACTAAC 57.531 39.130 0.00 0.00 34.34 2.34
2988 3285 4.182339 CAAGTCTGGATGTGTCATCTCAG 58.818 47.826 15.35 15.35 0.00 3.35
3080 3378 3.131396 CGTCCTACAAGTCAGCAAAGTT 58.869 45.455 0.00 0.00 0.00 2.66
3101 3399 1.611977 CATGGACATGGTCATGATGGC 59.388 52.381 19.46 0.00 41.20 4.40
3135 3433 6.464222 TCCCTCTGAAACAATACTTACACTG 58.536 40.000 0.00 0.00 0.00 3.66
3153 3451 6.043012 CCTCATCAAGATCAAGTAATCCCTCT 59.957 42.308 0.00 0.00 0.00 3.69
3160 3458 7.608153 TCGTTTACCTCATCAAGATCAAGTAA 58.392 34.615 0.00 0.00 0.00 2.24
3283 3584 4.526970 TCTCCAGCCAATCATTAACCTTC 58.473 43.478 0.00 0.00 0.00 3.46
3316 3617 2.682155 ACAGATCTTCGCCTTTCTCC 57.318 50.000 0.00 0.00 0.00 3.71
3395 3696 0.827507 GAGGAAAGGTTTGGCTGGCA 60.828 55.000 0.00 0.00 0.00 4.92
3465 3769 2.561733 GATCACACGGATCGACTTCA 57.438 50.000 0.00 0.00 42.81 3.02
3492 3796 5.747565 TGATCAAAAGCTTAGAACAACACG 58.252 37.500 0.00 0.00 0.00 4.49
3500 3804 7.765695 ACAAAAGGATGATCAAAAGCTTAGA 57.234 32.000 0.00 1.02 0.00 2.10
3505 3809 4.152938 GGCAACAAAAGGATGATCAAAAGC 59.847 41.667 0.00 0.00 0.00 3.51
3521 3825 5.593010 ACAAAAGCTTTTATACGGCAACAA 58.407 33.333 23.44 0.00 0.00 2.83
3530 3834 4.321378 GGCACCGGAACAAAAGCTTTTATA 60.321 41.667 23.44 0.00 0.00 0.98
3562 3866 1.792949 GCATACATTAGAACGGGCGAG 59.207 52.381 0.00 0.00 0.00 5.03
3586 3906 1.066303 CGAGTAGGAGTTAGCAGCAGG 59.934 57.143 0.00 0.00 0.00 4.85
3588 3908 2.124277 TCGAGTAGGAGTTAGCAGCA 57.876 50.000 0.00 0.00 0.00 4.41
3589 3909 3.505464 TTTCGAGTAGGAGTTAGCAGC 57.495 47.619 0.00 0.00 0.00 5.25
3590 3910 4.268884 GCAATTTCGAGTAGGAGTTAGCAG 59.731 45.833 0.00 0.00 0.00 4.24
3591 3911 4.181578 GCAATTTCGAGTAGGAGTTAGCA 58.818 43.478 0.00 0.00 0.00 3.49
3592 3912 4.181578 TGCAATTTCGAGTAGGAGTTAGC 58.818 43.478 0.00 0.00 0.00 3.09
3593 3913 4.806247 CCTGCAATTTCGAGTAGGAGTTAG 59.194 45.833 0.91 0.00 39.65 2.34
3594 3914 4.382685 CCCTGCAATTTCGAGTAGGAGTTA 60.383 45.833 7.91 0.00 39.65 2.24
3595 3915 3.600388 CCTGCAATTTCGAGTAGGAGTT 58.400 45.455 0.91 0.00 39.65 3.01
3596 3916 2.093447 CCCTGCAATTTCGAGTAGGAGT 60.093 50.000 7.91 0.00 39.65 3.85
3597 3917 2.555199 CCCTGCAATTTCGAGTAGGAG 58.445 52.381 7.91 0.47 39.65 3.69
3598 3918 1.406887 GCCCTGCAATTTCGAGTAGGA 60.407 52.381 7.91 0.00 39.65 2.94
3599 3919 1.017387 GCCCTGCAATTTCGAGTAGG 58.983 55.000 0.27 0.27 37.37 3.18
3600 3920 0.652592 CGCCCTGCAATTTCGAGTAG 59.347 55.000 0.00 0.00 0.00 2.57
3601 3921 0.036765 ACGCCCTGCAATTTCGAGTA 60.037 50.000 4.67 0.00 0.00 2.59
3602 3922 1.302511 ACGCCCTGCAATTTCGAGT 60.303 52.632 4.67 0.00 0.00 4.18
3603 3923 1.135315 CACGCCCTGCAATTTCGAG 59.865 57.895 4.67 0.00 0.00 4.04
3604 3924 2.976840 GCACGCCCTGCAATTTCGA 61.977 57.895 4.67 0.00 46.29 3.71
3618 3938 4.377370 TCCAACATGGAGTGCACG 57.623 55.556 12.01 0.00 42.67 5.34
3716 4036 4.840005 AGGCCTTCCTTAGCGCGC 62.840 66.667 26.66 26.66 40.66 6.86
3748 4068 4.019051 ACATGATCAGAGGGTTCATCACAA 60.019 41.667 0.00 0.00 34.45 3.33
3795 4115 1.540267 GTGTAGTCGTTCTCAGCCTCA 59.460 52.381 0.00 0.00 0.00 3.86
3797 4117 1.617322 TGTGTAGTCGTTCTCAGCCT 58.383 50.000 0.00 0.00 0.00 4.58
3807 4127 2.601763 GCCCGATTTACTTGTGTAGTCG 59.398 50.000 0.00 0.00 38.33 4.18
3813 4133 3.488489 CTTTTCGCCCGATTTACTTGTG 58.512 45.455 0.00 0.00 0.00 3.33
3825 4147 3.431725 CACTCGCCCTTTTCGCCC 61.432 66.667 0.00 0.00 0.00 6.13
3838 4160 1.839424 AAACATAGGGCCTTGCACTC 58.161 50.000 13.45 0.00 38.16 3.51
3868 4190 4.067896 GAGAACTCTGAGGCAAACATCAA 58.932 43.478 9.85 0.00 0.00 2.57
3882 4204 3.492337 ACTCGGTTTCTCAGAGAACTCT 58.508 45.455 12.75 0.00 40.01 3.24
3897 4219 6.760770 GTCTAGTACAAGATACACTACTCGGT 59.239 42.308 0.00 0.00 0.00 4.69
3916 4238 6.842807 ACTCTCTACTTCTAGCCTAGTCTAGT 59.157 42.308 7.65 4.34 37.78 2.57
3917 4239 7.299246 ACTCTCTACTTCTAGCCTAGTCTAG 57.701 44.000 1.19 1.19 37.87 2.43
3918 4240 6.016024 CGACTCTCTACTTCTAGCCTAGTCTA 60.016 46.154 0.00 0.00 31.00 2.59
3919 4241 5.221382 CGACTCTCTACTTCTAGCCTAGTCT 60.221 48.000 0.00 0.00 31.00 3.24
3941 4263 4.081142 AGACATGGATACCACACAATTCGA 60.081 41.667 0.00 0.00 35.80 3.71
3959 4281 6.715280 ACAGTTATGGTTCTCATCAAGACAT 58.285 36.000 0.00 0.00 37.30 3.06
3979 4301 6.513393 GCAAGAAAAGTACAACAGCATACAGT 60.513 38.462 0.00 0.00 0.00 3.55
4013 4335 4.586841 CACCATGGTTTCCTTTTTGACCTA 59.413 41.667 16.84 0.00 33.33 3.08
4014 4336 3.387699 CACCATGGTTTCCTTTTTGACCT 59.612 43.478 16.84 0.00 33.33 3.85
4015 4337 3.386402 TCACCATGGTTTCCTTTTTGACC 59.614 43.478 16.84 0.00 0.00 4.02
4016 4338 4.099419 ACTCACCATGGTTTCCTTTTTGAC 59.901 41.667 16.84 0.00 0.00 3.18
4017 4339 4.285863 ACTCACCATGGTTTCCTTTTTGA 58.714 39.130 16.84 5.14 0.00 2.69
4018 4340 4.670896 ACTCACCATGGTTTCCTTTTTG 57.329 40.909 16.84 0.01 0.00 2.44
4066 4388 1.527034 GGCTGAGCTGACACATGAAA 58.473 50.000 3.72 0.00 0.00 2.69
4091 4413 5.086104 AGGCATGTACGTATTCAGAGTTT 57.914 39.130 0.00 0.00 0.00 2.66
4138 4460 0.671251 TCACACGGCCAAATTCCAAC 59.329 50.000 2.24 0.00 0.00 3.77
4152 4474 2.167900 AGGTAAATAGAGCCGGTCACAC 59.832 50.000 1.90 0.00 0.00 3.82
4157 4479 2.170012 TGGAGGTAAATAGAGCCGGT 57.830 50.000 1.90 0.00 0.00 5.28
4202 4524 2.774809 AGCCAGATAAGAGGGTCCTTTC 59.225 50.000 0.00 0.00 0.00 2.62
4205 4527 1.694048 CCAGCCAGATAAGAGGGTCCT 60.694 57.143 0.00 0.00 32.31 3.85
4206 4528 0.761802 CCAGCCAGATAAGAGGGTCC 59.238 60.000 0.00 0.00 32.31 4.46
4230 4552 2.469465 AATGTCACCCCCTCACAGCG 62.469 60.000 0.00 0.00 0.00 5.18
4231 4553 0.251341 AAATGTCACCCCCTCACAGC 60.251 55.000 0.00 0.00 0.00 4.40
4234 4556 0.539438 TGCAAATGTCACCCCCTCAC 60.539 55.000 0.00 0.00 0.00 3.51
4235 4557 0.187117 TTGCAAATGTCACCCCCTCA 59.813 50.000 0.00 0.00 0.00 3.86
4237 4559 1.047801 GTTTGCAAATGTCACCCCCT 58.952 50.000 16.21 0.00 0.00 4.79
4238 4560 0.319469 CGTTTGCAAATGTCACCCCC 60.319 55.000 21.00 2.30 0.00 5.40
4245 4567 5.046529 TGCTATGAAAACGTTTGCAAATGT 58.953 33.333 27.44 27.44 39.69 2.71
4253 4575 6.915843 CACCTAAAACTGCTATGAAAACGTTT 59.084 34.615 7.96 7.96 0.00 3.60
4255 4577 5.529800 ACACCTAAAACTGCTATGAAAACGT 59.470 36.000 0.00 0.00 0.00 3.99
4261 4583 6.593770 CACATACACACCTAAAACTGCTATGA 59.406 38.462 0.00 0.00 0.00 2.15
4265 4587 4.072131 CCACATACACACCTAAAACTGCT 58.928 43.478 0.00 0.00 0.00 4.24
4266 4588 3.818773 ACCACATACACACCTAAAACTGC 59.181 43.478 0.00 0.00 0.00 4.40
4267 4589 5.049680 GTCACCACATACACACCTAAAACTG 60.050 44.000 0.00 0.00 0.00 3.16
4276 4598 1.796459 GAACCGTCACCACATACACAC 59.204 52.381 0.00 0.00 0.00 3.82
4278 4600 1.001633 AGGAACCGTCACCACATACAC 59.998 52.381 0.00 0.00 0.00 2.90
4282 4604 0.762418 TGAAGGAACCGTCACCACAT 59.238 50.000 5.45 0.00 30.07 3.21
4285 4607 0.679505 CTCTGAAGGAACCGTCACCA 59.320 55.000 5.45 0.00 31.66 4.17
4289 4611 0.733223 GTCGCTCTGAAGGAACCGTC 60.733 60.000 0.11 0.11 0.00 4.79
4290 4612 1.289380 GTCGCTCTGAAGGAACCGT 59.711 57.895 0.00 0.00 0.00 4.83
4291 4613 0.108615 ATGTCGCTCTGAAGGAACCG 60.109 55.000 0.00 0.00 0.00 4.44
4292 4614 2.166664 ACTATGTCGCTCTGAAGGAACC 59.833 50.000 0.00 0.00 0.00 3.62
4294 4616 2.427453 GGACTATGTCGCTCTGAAGGAA 59.573 50.000 0.00 0.00 32.65 3.36
4295 4617 2.025155 GGACTATGTCGCTCTGAAGGA 58.975 52.381 0.00 0.00 32.65 3.36
4296 4618 2.028130 AGGACTATGTCGCTCTGAAGG 58.972 52.381 0.00 0.00 32.65 3.46
4299 4621 1.213182 AGGAGGACTATGTCGCTCTGA 59.787 52.381 12.39 0.00 33.55 3.27
4300 4622 1.606668 GAGGAGGACTATGTCGCTCTG 59.393 57.143 12.39 0.00 33.55 3.35
4301 4623 1.477923 GGAGGAGGACTATGTCGCTCT 60.478 57.143 12.39 2.47 33.55 4.09
4302 4624 0.955905 GGAGGAGGACTATGTCGCTC 59.044 60.000 0.00 0.00 32.65 5.03
4303 4625 0.468400 GGGAGGAGGACTATGTCGCT 60.468 60.000 0.00 0.00 32.65 4.93
4304 4626 1.465200 GGGGAGGAGGACTATGTCGC 61.465 65.000 0.00 0.00 32.65 5.19
4305 4627 0.106167 TGGGGAGGAGGACTATGTCG 60.106 60.000 0.00 0.00 32.65 4.35
4306 4628 2.176247 TTGGGGAGGAGGACTATGTC 57.824 55.000 0.00 0.00 0.00 3.06
4307 4629 2.661176 TTTGGGGAGGAGGACTATGT 57.339 50.000 0.00 0.00 0.00 2.29
4308 4630 4.464947 GATTTTTGGGGAGGAGGACTATG 58.535 47.826 0.00 0.00 0.00 2.23
4313 4635 1.007607 GGGATTTTTGGGGAGGAGGA 58.992 55.000 0.00 0.00 0.00 3.71
4314 4636 0.709992 TGGGATTTTTGGGGAGGAGG 59.290 55.000 0.00 0.00 0.00 4.30
4315 4637 1.852633 GTGGGATTTTTGGGGAGGAG 58.147 55.000 0.00 0.00 0.00 3.69
4316 4638 0.039035 CGTGGGATTTTTGGGGAGGA 59.961 55.000 0.00 0.00 0.00 3.71
4317 4639 0.251608 ACGTGGGATTTTTGGGGAGG 60.252 55.000 0.00 0.00 0.00 4.30
4318 4640 1.173913 GACGTGGGATTTTTGGGGAG 58.826 55.000 0.00 0.00 0.00 4.30
4319 4641 0.606944 CGACGTGGGATTTTTGGGGA 60.607 55.000 0.00 0.00 0.00 4.81
4320 4642 1.880186 CGACGTGGGATTTTTGGGG 59.120 57.895 0.00 0.00 0.00 4.96
4321 4643 1.211709 GCGACGTGGGATTTTTGGG 59.788 57.895 0.00 0.00 0.00 4.12
4322 4644 0.168128 GAGCGACGTGGGATTTTTGG 59.832 55.000 0.00 0.00 0.00 3.28
4323 4645 0.168128 GGAGCGACGTGGGATTTTTG 59.832 55.000 0.00 0.00 0.00 2.44
4324 4646 1.296056 CGGAGCGACGTGGGATTTTT 61.296 55.000 0.00 0.00 0.00 1.94
4325 4647 1.740296 CGGAGCGACGTGGGATTTT 60.740 57.895 0.00 0.00 0.00 1.82
4326 4648 2.125673 CGGAGCGACGTGGGATTT 60.126 61.111 0.00 0.00 0.00 2.17
4327 4649 3.064987 CTCGGAGCGACGTGGGATT 62.065 63.158 0.00 0.00 34.94 3.01
4328 4650 3.518998 CTCGGAGCGACGTGGGAT 61.519 66.667 0.00 0.00 34.94 3.85
4329 4651 4.710167 TCTCGGAGCGACGTGGGA 62.710 66.667 0.00 0.00 34.94 4.37
4330 4652 2.758770 TTTTCTCGGAGCGACGTGGG 62.759 60.000 0.00 0.00 34.94 4.61
4331 4653 1.372499 TTTTCTCGGAGCGACGTGG 60.372 57.895 0.00 0.00 34.94 4.94
4332 4654 0.937699 TGTTTTCTCGGAGCGACGTG 60.938 55.000 0.00 1.44 34.94 4.49
4333 4655 0.663568 CTGTTTTCTCGGAGCGACGT 60.664 55.000 0.00 0.00 34.94 4.34
4334 4656 1.945776 GCTGTTTTCTCGGAGCGACG 61.946 60.000 0.00 0.00 0.00 5.12
4335 4657 1.627550 GGCTGTTTTCTCGGAGCGAC 61.628 60.000 0.00 0.00 31.89 5.19
4336 4658 1.374252 GGCTGTTTTCTCGGAGCGA 60.374 57.895 0.00 0.00 31.89 4.93
4337 4659 1.667830 TGGCTGTTTTCTCGGAGCG 60.668 57.895 0.00 0.00 31.89 5.03
4338 4660 1.578206 GGTGGCTGTTTTCTCGGAGC 61.578 60.000 0.00 0.00 0.00 4.70
4339 4661 0.035458 AGGTGGCTGTTTTCTCGGAG 59.965 55.000 0.00 0.00 0.00 4.63
4340 4662 0.034896 GAGGTGGCTGTTTTCTCGGA 59.965 55.000 0.00 0.00 0.00 4.55
4341 4663 0.955919 GGAGGTGGCTGTTTTCTCGG 60.956 60.000 0.00 0.00 0.00 4.63
4342 4664 1.291877 CGGAGGTGGCTGTTTTCTCG 61.292 60.000 0.00 0.00 0.00 4.04
4343 4665 2.544726 CGGAGGTGGCTGTTTTCTC 58.455 57.895 0.00 0.00 0.00 2.87
4344 4666 4.800554 CGGAGGTGGCTGTTTTCT 57.199 55.556 0.00 0.00 0.00 2.52
4362 4684 4.996062 TTGCTAGCGGTTTTAGTTGTAC 57.004 40.909 10.77 0.00 0.00 2.90
4374 4696 5.610975 CATTTCAAATGTTTTTGCTAGCGG 58.389 37.500 10.77 0.00 41.66 5.52
4375 4697 5.074791 GCATTTCAAATGTTTTTGCTAGCG 58.925 37.500 11.80 0.00 41.66 4.26
4378 4700 6.568081 GCATGGCATTTCAAATGTTTTTGCTA 60.568 34.615 11.80 0.00 41.66 3.49
4392 4714 1.135721 GTTGGGAGAGCATGGCATTTC 59.864 52.381 0.00 0.00 0.00 2.17
4397 4719 1.377202 TTCGTTGGGAGAGCATGGC 60.377 57.895 0.00 0.00 0.00 4.40
4398 4720 1.361668 CGTTCGTTGGGAGAGCATGG 61.362 60.000 0.00 0.00 0.00 3.66
4400 4722 0.389948 GACGTTCGTTGGGAGAGCAT 60.390 55.000 0.00 0.00 0.00 3.79
4401 4723 1.006571 GACGTTCGTTGGGAGAGCA 60.007 57.895 0.00 0.00 0.00 4.26
4402 4724 1.006571 TGACGTTCGTTGGGAGAGC 60.007 57.895 0.00 0.00 0.00 4.09
4403 4725 1.009389 GCTGACGTTCGTTGGGAGAG 61.009 60.000 0.00 0.00 0.00 3.20
4404 4726 1.006571 GCTGACGTTCGTTGGGAGA 60.007 57.895 0.00 0.00 0.00 3.71
4405 4727 2.027625 GGCTGACGTTCGTTGGGAG 61.028 63.158 0.00 0.00 0.00 4.30
4406 4728 2.029964 GGCTGACGTTCGTTGGGA 59.970 61.111 0.00 0.00 0.00 4.37
4407 4729 1.440938 TTTGGCTGACGTTCGTTGGG 61.441 55.000 0.00 0.00 0.00 4.12
4408 4730 0.591170 ATTTGGCTGACGTTCGTTGG 59.409 50.000 0.00 0.00 0.00 3.77
4409 4731 3.185594 TCTTATTTGGCTGACGTTCGTTG 59.814 43.478 0.00 0.00 0.00 4.10
4410 4732 3.395639 TCTTATTTGGCTGACGTTCGTT 58.604 40.909 0.00 0.00 0.00 3.85
4411 4733 3.034721 TCTTATTTGGCTGACGTTCGT 57.965 42.857 0.00 0.00 0.00 3.85
4412 4734 4.600012 AATCTTATTTGGCTGACGTTCG 57.400 40.909 0.00 0.00 0.00 3.95
4413 4735 6.024049 CAGAAATCTTATTTGGCTGACGTTC 58.976 40.000 0.00 0.00 0.00 3.95
4414 4736 5.705441 TCAGAAATCTTATTTGGCTGACGTT 59.295 36.000 0.00 0.00 0.00 3.99
4415 4737 5.245531 TCAGAAATCTTATTTGGCTGACGT 58.754 37.500 0.00 0.00 0.00 4.34
4416 4738 5.801350 TCAGAAATCTTATTTGGCTGACG 57.199 39.130 0.00 0.00 0.00 4.35
4417 4739 8.816640 TTTTTCAGAAATCTTATTTGGCTGAC 57.183 30.769 0.00 0.00 31.40 3.51
4441 4763 6.313658 GGCAAAGTTCATGTGAAGTTCTTTTT 59.686 34.615 14.31 0.00 44.39 1.94
4447 4769 2.687935 ACGGCAAAGTTCATGTGAAGTT 59.312 40.909 9.44 9.44 46.39 2.66
4449 4771 2.653890 CACGGCAAAGTTCATGTGAAG 58.346 47.619 0.00 0.00 34.27 3.02
4451 4773 0.310543 GCACGGCAAAGTTCATGTGA 59.689 50.000 0.00 0.00 0.00 3.58
4460 4782 1.498865 AAGTCTGTCGCACGGCAAAG 61.499 55.000 0.00 0.00 0.00 2.77
4470 4792 2.095161 GGAGAGGTGTACAAGTCTGTCG 60.095 54.545 11.97 0.00 36.96 4.35
4482 4804 0.251653 TACTTCTGGCGGAGAGGTGT 60.252 55.000 8.80 0.00 41.03 4.16
4485 4807 0.741915 GACTACTTCTGGCGGAGAGG 59.258 60.000 0.00 0.00 33.90 3.69
4490 4812 1.805945 GCGTGACTACTTCTGGCGG 60.806 63.158 0.00 0.00 0.00 6.13
4491 4813 2.152699 CGCGTGACTACTTCTGGCG 61.153 63.158 0.00 0.00 39.21 5.69
4495 4817 4.438472 GGATAGAAACGCGTGACTACTTCT 60.438 45.833 21.26 21.26 0.00 2.85
4501 4823 0.801067 GCGGATAGAAACGCGTGACT 60.801 55.000 14.98 17.77 46.58 3.41
4517 4839 1.301087 TGGTGTGTTCGTTAGGCGG 60.301 57.895 0.00 0.00 41.72 6.13
4526 4849 4.266739 GGTTTTCGATTTTGTGGTGTGTTC 59.733 41.667 0.00 0.00 0.00 3.18
4541 4864 3.500299 TCATGCAAAATCTCGGTTTTCGA 59.500 39.130 0.00 0.00 46.77 3.71
4543 4866 6.710692 AATTCATGCAAAATCTCGGTTTTC 57.289 33.333 0.00 0.00 0.00 2.29
4558 4882 9.448294 TTTATTGTTTTCTTGCAAAATTCATGC 57.552 25.926 0.00 8.77 44.08 4.06
4572 4896 8.836413 TCTCGTGACAGAATTTTATTGTTTTCT 58.164 29.630 0.00 0.00 0.00 2.52
4577 4901 8.783093 TCAAATCTCGTGACAGAATTTTATTGT 58.217 29.630 0.00 0.00 0.00 2.71
4580 4904 8.777865 TCTCAAATCTCGTGACAGAATTTTAT 57.222 30.769 0.00 0.00 0.00 1.40
4581 4905 8.601845 TTCTCAAATCTCGTGACAGAATTTTA 57.398 30.769 0.00 0.00 0.00 1.52
4582 4906 7.496529 TTCTCAAATCTCGTGACAGAATTTT 57.503 32.000 0.00 0.00 0.00 1.82
4587 4911 4.280929 TCCTTTCTCAAATCTCGTGACAGA 59.719 41.667 0.00 0.00 0.00 3.41
4590 4914 5.924475 TTTCCTTTCTCAAATCTCGTGAC 57.076 39.130 0.00 0.00 0.00 3.67
4593 4917 5.932303 TCGATTTTCCTTTCTCAAATCTCGT 59.068 36.000 0.00 0.00 35.57 4.18
4595 4919 9.283420 GAAATCGATTTTCCTTTCTCAAATCTC 57.717 33.333 23.49 2.15 38.22 2.75
4596 4920 7.965107 CGAAATCGATTTTCCTTTCTCAAATCT 59.035 33.333 23.49 0.00 40.60 2.40
4597 4921 7.962918 TCGAAATCGATTTTCCTTTCTCAAATC 59.037 33.333 23.49 5.83 44.22 2.17
4598 4922 7.816640 TCGAAATCGATTTTCCTTTCTCAAAT 58.183 30.769 23.49 0.00 44.22 2.32
4599 4923 7.197071 TCGAAATCGATTTTCCTTTCTCAAA 57.803 32.000 23.49 0.00 44.22 2.69
4600 4924 6.795098 TCGAAATCGATTTTCCTTTCTCAA 57.205 33.333 23.49 0.00 44.22 3.02
4656 4982 2.172505 TGTGGGATTCCATACGAGCAAT 59.827 45.455 0.00 0.00 46.09 3.56
4657 4983 1.557371 TGTGGGATTCCATACGAGCAA 59.443 47.619 0.00 0.00 46.09 3.91
4676 5002 2.540361 CCGTATTACTCGTTCTCCCGTG 60.540 54.545 0.00 0.00 0.00 4.94
4677 5003 1.672881 CCGTATTACTCGTTCTCCCGT 59.327 52.381 0.00 0.00 0.00 5.28


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.