Multiple sequence alignment - TraesCS2A01G438500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G438500 chr2A 100.000 7376 0 0 1 7376 689752887 689760262 0.000000e+00 13622.0
1 TraesCS2A01G438500 chr2A 78.466 339 53 11 6934 7269 689803598 689803919 3.490000e-48 204.0
2 TraesCS2A01G438500 chr2B 89.234 2768 174 48 4005 6715 653596590 653593890 0.000000e+00 3347.0
3 TraesCS2A01G438500 chr2B 91.715 1726 77 24 893 2581 653598271 653596575 0.000000e+00 2335.0
4 TraesCS2A01G438500 chr2B 95.833 1416 56 3 2591 4005 147504783 147506196 0.000000e+00 2285.0
5 TraesCS2A01G438500 chr2B 80.516 426 29 20 6796 7218 653593891 653593517 2.030000e-70 278.0
6 TraesCS2A01G438500 chr2B 87.435 191 15 7 7191 7376 653593490 653593304 2.080000e-50 211.0
7 TraesCS2A01G438500 chr2D 95.645 1929 38 16 4005 5918 546813677 546811780 0.000000e+00 3055.0
8 TraesCS2A01G438500 chr2D 94.463 1806 61 17 792 2581 546815444 546813662 0.000000e+00 2745.0
9 TraesCS2A01G438500 chr2D 97.034 1416 41 1 2591 4005 10751665 10753080 0.000000e+00 2381.0
10 TraesCS2A01G438500 chr2D 95.631 1419 54 8 2591 4005 630957726 630956312 0.000000e+00 2270.0
11 TraesCS2A01G438500 chr2D 91.026 1716 81 26 904 2581 546688191 546686511 0.000000e+00 2248.0
12 TraesCS2A01G438500 chr2D 90.416 1586 93 22 4861 6418 546685617 546684063 0.000000e+00 2032.0
13 TraesCS2A01G438500 chr2D 91.389 871 46 7 4005 4848 546686526 546685658 0.000000e+00 1166.0
14 TraesCS2A01G438500 chr2D 94.164 754 40 2 4 757 546816191 546815442 0.000000e+00 1146.0
15 TraesCS2A01G438500 chr2D 89.401 802 66 3 5916 6715 546809037 546808253 0.000000e+00 992.0
16 TraesCS2A01G438500 chr2D 81.438 598 47 31 6796 7376 546808254 546807704 1.470000e-116 431.0
17 TraesCS2A01G438500 chr2D 78.049 451 58 17 6479 6913 546684059 546683634 5.720000e-61 246.0
18 TraesCS2A01G438500 chr2D 90.385 52 1 3 6977 7025 546683615 546683565 1.720000e-06 65.8
19 TraesCS2A01G438500 chr2D 92.500 40 3 0 6797 6836 333135262 333135301 2.870000e-04 58.4
20 TraesCS2A01G438500 chr7D 97.297 1369 35 2 2638 4004 497342549 497341181 0.000000e+00 2322.0
21 TraesCS2A01G438500 chr7D 94.944 1424 63 9 2585 4005 535854125 535855542 0.000000e+00 2222.0
22 TraesCS2A01G438500 chr7D 84.260 845 83 28 1429 2243 72328698 72329522 0.000000e+00 778.0
23 TraesCS2A01G438500 chr5A 95.413 1417 60 4 2591 4004 601396190 601397604 0.000000e+00 2252.0
24 TraesCS2A01G438500 chr6D 95.120 1414 61 8 2611 4020 326575780 326577189 0.000000e+00 2222.0
25 TraesCS2A01G438500 chr6D 94.715 1419 69 6 2591 4005 377173239 377174655 0.000000e+00 2200.0
26 TraesCS2A01G438500 chr1A 94.912 1415 69 2 2591 4002 412651174 412652588 0.000000e+00 2211.0
27 TraesCS2A01G438500 chr4A 81.862 838 94 37 1429 2243 8930668 8929866 0.000000e+00 652.0
28 TraesCS2A01G438500 chr4A 82.869 467 64 9 90 546 32967105 32966645 8.910000e-109 405.0
29 TraesCS2A01G438500 chr3A 83.507 673 75 20 1588 2243 152724838 152724185 4.930000e-166 595.0
30 TraesCS2A01G438500 chr7B 85.806 465 55 3 1435 1889 349588339 349587876 4.000000e-132 483.0
31 TraesCS2A01G438500 chr7B 86.610 351 41 5 1552 1900 73738129 73738475 4.180000e-102 383.0
32 TraesCS2A01G438500 chr4B 85.294 476 57 4 1435 1900 314827615 314827143 5.180000e-131 479.0
33 TraesCS2A01G438500 chr3B 86.158 354 36 9 1431 1774 72706351 72706001 3.250000e-98 370.0
34 TraesCS2A01G438500 chr7A 97.222 36 1 0 2591 2626 696714980 696715015 2.220000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G438500 chr2A 689752887 689760262 7375 False 13622.00 13622 100.0000 1 7376 1 chr2A.!!$F1 7375
1 TraesCS2A01G438500 chr2B 147504783 147506196 1413 False 2285.00 2285 95.8330 2591 4005 1 chr2B.!!$F1 1414
2 TraesCS2A01G438500 chr2B 653593304 653598271 4967 True 1542.75 3347 87.2250 893 7376 4 chr2B.!!$R1 6483
3 TraesCS2A01G438500 chr2D 10751665 10753080 1415 False 2381.00 2381 97.0340 2591 4005 1 chr2D.!!$F1 1414
4 TraesCS2A01G438500 chr2D 630956312 630957726 1414 True 2270.00 2270 95.6310 2591 4005 1 chr2D.!!$R1 1414
5 TraesCS2A01G438500 chr2D 546807704 546816191 8487 True 1673.80 3055 91.0222 4 7376 5 chr2D.!!$R3 7372
6 TraesCS2A01G438500 chr2D 546683565 546688191 4626 True 1151.56 2248 88.2530 904 7025 5 chr2D.!!$R2 6121
7 TraesCS2A01G438500 chr7D 497341181 497342549 1368 True 2322.00 2322 97.2970 2638 4004 1 chr7D.!!$R1 1366
8 TraesCS2A01G438500 chr7D 535854125 535855542 1417 False 2222.00 2222 94.9440 2585 4005 1 chr7D.!!$F2 1420
9 TraesCS2A01G438500 chr7D 72328698 72329522 824 False 778.00 778 84.2600 1429 2243 1 chr7D.!!$F1 814
10 TraesCS2A01G438500 chr5A 601396190 601397604 1414 False 2252.00 2252 95.4130 2591 4004 1 chr5A.!!$F1 1413
11 TraesCS2A01G438500 chr6D 326575780 326577189 1409 False 2222.00 2222 95.1200 2611 4020 1 chr6D.!!$F1 1409
12 TraesCS2A01G438500 chr6D 377173239 377174655 1416 False 2200.00 2200 94.7150 2591 4005 1 chr6D.!!$F2 1414
13 TraesCS2A01G438500 chr1A 412651174 412652588 1414 False 2211.00 2211 94.9120 2591 4002 1 chr1A.!!$F1 1411
14 TraesCS2A01G438500 chr4A 8929866 8930668 802 True 652.00 652 81.8620 1429 2243 1 chr4A.!!$R1 814
15 TraesCS2A01G438500 chr3A 152724185 152724838 653 True 595.00 595 83.5070 1588 2243 1 chr3A.!!$R1 655

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
458 459 0.032952 GACAAGGCGTGGTGTCACTA 59.967 55.000 5.22 0.0 43.02 2.74 F
864 865 0.107703 TCACTCCCGTGGATGCAATC 60.108 55.000 0.00 0.0 44.55 2.67 F
1956 1987 0.033796 ACTGGGCAGGACATGGATTG 60.034 55.000 0.00 0.0 0.00 2.67 F
2638 2687 0.178990 GGGGCAAATCCTAATCGCCT 60.179 55.000 0.00 0.0 42.56 5.52 F
3314 3373 0.107993 CTTCATCTTGGAGGCTGCGA 60.108 55.000 0.35 0.0 0.00 5.10 F
4196 4257 1.470979 CGGCGCTGGTACTTAGTCATT 60.471 52.381 8.83 0.0 0.00 2.57 F
5609 5758 1.002468 GTTTGCTCAGTGTGTGCGAAT 60.002 47.619 6.86 0.0 40.83 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1754 1783 1.183030 CCTACCCACACAGACCACGA 61.183 60.000 0.00 0.0 0.00 4.35 R
2627 2676 2.191513 CGGGTCGAGGCGATTAGGA 61.192 63.158 0.00 0.0 38.42 2.94 R
2911 2966 0.041535 ACATCACCATGGCCACCAAT 59.958 50.000 8.16 0.0 36.95 3.16 R
4161 4222 0.384309 CGCCGCATCCTAACTCTACA 59.616 55.000 0.00 0.0 0.00 2.74 R
4682 4778 3.259374 CCCTGGATCGATAATGCTACACT 59.741 47.826 0.00 0.0 0.00 3.55 R
5816 5974 0.394192 CACAACCACAGGAGAGAGCA 59.606 55.000 0.00 0.0 0.00 4.26 R
6611 9524 0.037590 AATTAAGGCGTCCACTGGCA 59.962 50.000 0.00 0.0 0.00 4.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.629617 ACAAACCTTCTTCATGCTTGGG 59.370 45.455 0.00 0.00 0.00 4.12
45 46 5.714333 TCTTCATGCTTGGGTTTTATTGCTA 59.286 36.000 0.00 0.00 0.00 3.49
186 187 7.937394 AGATGAAGAAGATGAATATGACATGCA 59.063 33.333 0.00 0.00 0.00 3.96
248 249 1.421646 GGGTCAGGATTGATCGGGATT 59.578 52.381 0.00 0.00 35.16 3.01
321 322 5.878116 TCCGATGGACTGTACAAATTTAAGG 59.122 40.000 0.00 0.00 0.00 2.69
363 364 5.117287 GCTATCGATAAGTTGCCTAGAAACG 59.883 44.000 6.58 0.00 32.65 3.60
366 367 4.860907 TCGATAAGTTGCCTAGAAACGAAC 59.139 41.667 0.00 0.00 32.65 3.95
368 369 1.792006 AGTTGCCTAGAAACGAACGG 58.208 50.000 0.00 0.00 32.65 4.44
380 381 0.748450 ACGAACGGGTGAAAGTCTGA 59.252 50.000 0.00 0.00 0.00 3.27
455 456 2.279851 CGACAAGGCGTGGTGTCA 60.280 61.111 5.22 0.00 43.57 3.58
457 458 1.227556 GACAAGGCGTGGTGTCACT 60.228 57.895 5.22 0.00 43.02 3.41
458 459 0.032952 GACAAGGCGTGGTGTCACTA 59.967 55.000 5.22 0.00 43.02 2.74
489 490 0.867753 CTCGAAGCGAACTGGATCCG 60.868 60.000 7.39 4.62 34.74 4.18
501 502 0.620410 TGGATCCGGGGAAGACACAT 60.620 55.000 7.39 0.00 0.00 3.21
514 515 0.735978 GACACATCGGCGATGACACA 60.736 55.000 45.33 10.98 42.09 3.72
538 539 2.382305 TGGAGGGGAGTCTAAGACTTGA 59.618 50.000 0.00 0.00 43.53 3.02
539 540 3.012959 TGGAGGGGAGTCTAAGACTTGAT 59.987 47.826 0.00 0.00 43.53 2.57
546 547 4.938226 GGAGTCTAAGACTTGATGGTTTGG 59.062 45.833 0.00 0.00 43.53 3.28
554 555 3.758931 GATGGTTTGGGGGTGCGC 61.759 66.667 0.00 0.00 0.00 6.09
590 591 2.012673 CTGAGAAAAGGATGAAGGCGG 58.987 52.381 0.00 0.00 0.00 6.13
593 594 1.303317 AAAAGGATGAAGGCGGCGT 60.303 52.632 9.37 0.00 0.00 5.68
618 619 3.876278 GGGGGAGAGGGGGCCTAT 61.876 72.222 0.84 0.00 31.76 2.57
634 635 2.631545 GCCTATAGGAAAGCTCGGGTAA 59.368 50.000 23.61 0.00 37.39 2.85
707 708 3.552384 AACAGGCGGGTCGACCAA 61.552 61.111 34.40 0.00 40.22 3.67
728 729 6.528537 CAACATTAGATTGGATGGTTGGAA 57.471 37.500 0.00 0.00 0.00 3.53
729 730 6.567050 CAACATTAGATTGGATGGTTGGAAG 58.433 40.000 0.00 0.00 0.00 3.46
730 731 6.078456 ACATTAGATTGGATGGTTGGAAGA 57.922 37.500 0.00 0.00 0.00 2.87
734 735 2.603075 TTGGATGGTTGGAAGAAGGG 57.397 50.000 0.00 0.00 0.00 3.95
739 740 1.742308 TGGTTGGAAGAAGGGCTAGT 58.258 50.000 0.00 0.00 0.00 2.57
740 741 1.351017 TGGTTGGAAGAAGGGCTAGTG 59.649 52.381 0.00 0.00 0.00 2.74
750 751 1.872773 AGGGCTAGTGGAGGAAGAAG 58.127 55.000 0.00 0.00 0.00 2.85
753 754 3.105283 GGGCTAGTGGAGGAAGAAGTTA 58.895 50.000 0.00 0.00 0.00 2.24
757 758 4.382147 GCTAGTGGAGGAAGAAGTTACAGG 60.382 50.000 0.00 0.00 0.00 4.00
758 759 3.858135 AGTGGAGGAAGAAGTTACAGGA 58.142 45.455 0.00 0.00 0.00 3.86
759 760 3.835395 AGTGGAGGAAGAAGTTACAGGAG 59.165 47.826 0.00 0.00 0.00 3.69
760 761 2.567615 TGGAGGAAGAAGTTACAGGAGC 59.432 50.000 0.00 0.00 0.00 4.70
762 763 1.909986 AGGAAGAAGTTACAGGAGCCC 59.090 52.381 0.00 0.00 0.00 5.19
765 766 3.339141 GAAGAAGTTACAGGAGCCCTTG 58.661 50.000 0.00 0.00 0.00 3.61
766 767 2.621070 AGAAGTTACAGGAGCCCTTGA 58.379 47.619 0.00 0.00 0.00 3.02
767 768 2.979678 AGAAGTTACAGGAGCCCTTGAA 59.020 45.455 0.00 0.00 0.00 2.69
768 769 3.589288 AGAAGTTACAGGAGCCCTTGAAT 59.411 43.478 0.00 0.00 0.00 2.57
769 770 4.043435 AGAAGTTACAGGAGCCCTTGAATT 59.957 41.667 0.00 0.00 0.00 2.17
770 771 4.388577 AGTTACAGGAGCCCTTGAATTT 57.611 40.909 0.00 0.00 0.00 1.82
771 772 5.514500 AGTTACAGGAGCCCTTGAATTTA 57.486 39.130 0.00 0.00 0.00 1.40
772 773 5.887754 AGTTACAGGAGCCCTTGAATTTAA 58.112 37.500 0.00 0.00 0.00 1.52
773 774 6.311735 AGTTACAGGAGCCCTTGAATTTAAA 58.688 36.000 0.00 0.00 0.00 1.52
774 775 6.954102 AGTTACAGGAGCCCTTGAATTTAAAT 59.046 34.615 0.00 0.00 0.00 1.40
775 776 5.921962 ACAGGAGCCCTTGAATTTAAATC 57.078 39.130 0.10 0.00 0.00 2.17
776 777 5.332743 ACAGGAGCCCTTGAATTTAAATCA 58.667 37.500 0.10 0.00 0.00 2.57
777 778 5.779771 ACAGGAGCCCTTGAATTTAAATCAA 59.220 36.000 0.10 6.95 35.60 2.57
778 779 6.269769 ACAGGAGCCCTTGAATTTAAATCAAA 59.730 34.615 0.10 0.00 36.43 2.69
779 780 6.591448 CAGGAGCCCTTGAATTTAAATCAAAC 59.409 38.462 0.10 1.94 36.43 2.93
780 781 5.576774 GGAGCCCTTGAATTTAAATCAAACG 59.423 40.000 0.10 2.83 36.43 3.60
781 782 5.478407 AGCCCTTGAATTTAAATCAAACGG 58.522 37.500 0.10 10.03 36.43 4.44
782 783 4.092821 GCCCTTGAATTTAAATCAAACGGC 59.907 41.667 20.34 20.34 41.34 5.68
783 784 5.478407 CCCTTGAATTTAAATCAAACGGCT 58.522 37.500 0.10 0.00 36.43 5.52
784 785 6.626302 CCCTTGAATTTAAATCAAACGGCTA 58.374 36.000 0.10 0.00 36.43 3.93
785 786 7.093992 CCCTTGAATTTAAATCAAACGGCTAA 58.906 34.615 0.10 0.00 36.43 3.09
786 787 7.600752 CCCTTGAATTTAAATCAAACGGCTAAA 59.399 33.333 0.10 0.00 36.43 1.85
787 788 8.983724 CCTTGAATTTAAATCAAACGGCTAAAA 58.016 29.630 0.10 0.00 36.43 1.52
794 795 6.466308 AAATCAAACGGCTAAAAATTCAGC 57.534 33.333 0.00 0.00 37.05 4.26
795 796 4.846779 TCAAACGGCTAAAAATTCAGCT 57.153 36.364 6.61 0.00 37.91 4.24
796 797 5.195001 TCAAACGGCTAAAAATTCAGCTT 57.805 34.783 6.61 0.00 37.91 3.74
797 798 6.320494 TCAAACGGCTAAAAATTCAGCTTA 57.680 33.333 6.61 0.00 37.91 3.09
798 799 6.146898 TCAAACGGCTAAAAATTCAGCTTAC 58.853 36.000 6.61 0.00 37.91 2.34
799 800 5.699097 AACGGCTAAAAATTCAGCTTACA 57.301 34.783 6.61 0.00 37.91 2.41
864 865 0.107703 TCACTCCCGTGGATGCAATC 60.108 55.000 0.00 0.00 44.55 2.67
891 892 1.605232 ACCAAACGGACAAATTCGGAC 59.395 47.619 0.00 0.00 0.00 4.79
945 946 1.079503 GTGTTTCCTCCTCGTCATGC 58.920 55.000 0.00 0.00 0.00 4.06
967 968 4.687215 GCAGTCGGCAGCCAGTGA 62.687 66.667 13.30 0.00 43.97 3.41
968 969 2.433838 CAGTCGGCAGCCAGTGAG 60.434 66.667 13.30 0.00 0.00 3.51
969 970 2.919856 AGTCGGCAGCCAGTGAGT 60.920 61.111 13.30 0.28 0.00 3.41
970 971 2.740055 GTCGGCAGCCAGTGAGTG 60.740 66.667 13.30 0.00 0.00 3.51
971 972 2.917227 TCGGCAGCCAGTGAGTGA 60.917 61.111 13.30 0.00 0.00 3.41
972 973 2.031012 CGGCAGCCAGTGAGTGAA 59.969 61.111 13.30 0.00 0.00 3.18
973 974 2.031516 CGGCAGCCAGTGAGTGAAG 61.032 63.158 13.30 0.00 0.00 3.02
974 975 1.072159 GGCAGCCAGTGAGTGAAGT 59.928 57.895 6.55 0.00 0.00 3.01
975 976 0.952984 GGCAGCCAGTGAGTGAAGTC 60.953 60.000 6.55 0.00 0.00 3.01
976 977 0.250038 GCAGCCAGTGAGTGAAGTCA 60.250 55.000 0.00 0.00 0.00 3.41
977 978 1.793258 CAGCCAGTGAGTGAAGTCAG 58.207 55.000 0.00 0.00 0.00 3.51
978 979 1.069823 CAGCCAGTGAGTGAAGTCAGT 59.930 52.381 0.00 0.00 0.00 3.41
999 1000 0.908910 AGTCACCACAGACCACACAA 59.091 50.000 0.00 0.00 39.34 3.33
1303 1304 2.029964 GCCTCCACGTTTCCGACA 59.970 61.111 0.00 0.00 37.88 4.35
1336 1337 1.215647 GTCGTCGAGCACAATCCCT 59.784 57.895 0.00 0.00 0.00 4.20
1591 1618 2.353889 CTGCAGAATCCTCATCAAACCG 59.646 50.000 8.42 0.00 0.00 4.44
1598 1625 1.278985 TCCTCATCAAACCGCATCACT 59.721 47.619 0.00 0.00 0.00 3.41
1643 1670 7.068716 GGATCATTTAGTGGAACAATTTAGGCT 59.931 37.037 0.00 0.00 44.16 4.58
1703 1730 1.466167 CGATGTGTGCTTTTCTCCTGG 59.534 52.381 0.00 0.00 0.00 4.45
1704 1731 2.508526 GATGTGTGCTTTTCTCCTGGT 58.491 47.619 0.00 0.00 0.00 4.00
1754 1783 1.374252 CGGCAAGTTGAGTAGGCGT 60.374 57.895 7.16 0.00 43.78 5.68
1762 1791 0.892358 TTGAGTAGGCGTCGTGGTCT 60.892 55.000 0.00 0.00 0.00 3.85
1785 1814 1.050988 TGGGTAGGCAGCAGGAGATC 61.051 60.000 0.00 0.00 0.00 2.75
1945 1976 6.879458 ACAAGTACTTTATCTAAACTGGGCAG 59.121 38.462 5.07 0.00 0.00 4.85
1947 1978 5.724854 AGTACTTTATCTAAACTGGGCAGGA 59.275 40.000 0.00 0.00 0.00 3.86
1948 1979 4.844884 ACTTTATCTAAACTGGGCAGGAC 58.155 43.478 0.00 0.00 0.00 3.85
1949 1980 4.288626 ACTTTATCTAAACTGGGCAGGACA 59.711 41.667 0.00 0.00 0.00 4.02
1950 1981 5.044846 ACTTTATCTAAACTGGGCAGGACAT 60.045 40.000 0.00 0.00 0.00 3.06
1951 1982 2.787473 TCTAAACTGGGCAGGACATG 57.213 50.000 0.00 0.00 0.00 3.21
1953 1984 1.281867 CTAAACTGGGCAGGACATGGA 59.718 52.381 0.00 0.00 0.00 3.41
1954 1985 0.706433 AAACTGGGCAGGACATGGAT 59.294 50.000 0.00 0.00 0.00 3.41
1956 1987 0.033796 ACTGGGCAGGACATGGATTG 60.034 55.000 0.00 0.00 0.00 2.67
2085 2126 4.020617 TCTTGCCTGCAGGTCGGG 62.021 66.667 32.81 19.84 44.43 5.14
2581 2630 2.260844 ATCATGGCCTAATGACGTGG 57.739 50.000 7.87 0.00 39.32 4.94
2582 2631 0.463654 TCATGGCCTAATGACGTGGC 60.464 55.000 3.32 5.31 45.42 5.01
2583 2632 1.523711 ATGGCCTAATGACGTGGCG 60.524 57.895 3.32 0.00 46.97 5.69
2627 2676 4.796495 GGCGACTCGGGGGCAAAT 62.796 66.667 0.00 0.00 0.00 2.32
2638 2687 0.178990 GGGGCAAATCCTAATCGCCT 60.179 55.000 0.00 0.00 42.56 5.52
2955 3010 0.179026 CTCGACCCCGATCTACTCCA 60.179 60.000 0.00 0.00 44.62 3.86
2978 3033 2.279784 CAGCGGATCCGGCTCTTC 60.280 66.667 33.98 16.95 40.19 2.87
3314 3373 0.107993 CTTCATCTTGGAGGCTGCGA 60.108 55.000 0.35 0.00 0.00 5.10
3658 3717 4.481195 GCAGAGTGGCCAGACAAA 57.519 55.556 5.11 0.00 0.00 2.83
3672 3731 3.748568 CCAGACAAAGTAGAAGCCTCAAC 59.251 47.826 0.00 0.00 0.00 3.18
3688 3747 4.141846 GCCTCAACATGATCTGAAGACCTA 60.142 45.833 0.00 0.00 0.00 3.08
3920 3979 8.079203 CAGGCACATTGTTGTAATACTTTGTAA 58.921 33.333 0.00 0.00 33.76 2.41
4161 4222 3.301222 ATTGGGGCGGCACTGGATT 62.301 57.895 14.22 0.00 0.00 3.01
4196 4257 1.470979 CGGCGCTGGTACTTAGTCATT 60.471 52.381 8.83 0.00 0.00 2.57
4205 4266 6.349363 GCTGGTACTTAGTCATTTCCTTTTGG 60.349 42.308 0.00 0.00 42.21 3.28
4678 4774 6.861065 TCAGTTCAGAAACTTGTGGATTAC 57.139 37.500 0.00 0.00 43.28 1.89
4679 4775 5.465390 TCAGTTCAGAAACTTGTGGATTACG 59.535 40.000 0.00 0.00 43.28 3.18
4680 4776 5.236478 CAGTTCAGAAACTTGTGGATTACGT 59.764 40.000 0.00 0.00 43.28 3.57
4681 4777 6.422701 CAGTTCAGAAACTTGTGGATTACGTA 59.577 38.462 0.00 0.00 43.28 3.57
4682 4778 6.987992 AGTTCAGAAACTTGTGGATTACGTAA 59.012 34.615 11.02 11.02 43.28 3.18
4826 4932 9.832445 TTCAACTACATAATCCTGAAACTATCC 57.168 33.333 0.00 0.00 0.00 2.59
4948 5084 7.776030 TGGGAAAGTTTTGAGTTACTAATGTGA 59.224 33.333 0.00 0.00 0.00 3.58
5182 5320 8.186821 ACAGTTCTTCTATATTTGCTTGATTGC 58.813 33.333 0.00 0.00 0.00 3.56
5609 5758 1.002468 GTTTGCTCAGTGTGTGCGAAT 60.002 47.619 6.86 0.00 40.83 3.34
5707 5856 5.726793 TCTTCTCTTTGGGAATAGCCTTAGT 59.273 40.000 0.00 0.00 36.66 2.24
5711 5860 6.098409 TCTCTTTGGGAATAGCCTTAGTAGTG 59.902 42.308 0.00 0.00 36.66 2.74
5712 5861 5.724854 TCTTTGGGAATAGCCTTAGTAGTGT 59.275 40.000 0.00 0.00 36.66 3.55
5713 5862 6.899075 TCTTTGGGAATAGCCTTAGTAGTGTA 59.101 38.462 0.00 0.00 36.66 2.90
5801 5959 3.118992 TGTGATGGTCAGTGCTCATAGAC 60.119 47.826 0.00 0.00 0.00 2.59
5812 5970 1.807755 GCTCATAGACATTGCTCGCCA 60.808 52.381 0.00 0.00 0.00 5.69
5816 5974 3.947196 TCATAGACATTGCTCGCCATTTT 59.053 39.130 0.00 0.00 0.00 1.82
5852 6010 1.064758 TGTGGAACAGCTGACTTGGTT 60.065 47.619 23.35 2.02 45.67 3.67
5853 6011 2.024414 GTGGAACAGCTGACTTGGTTT 58.976 47.619 23.35 1.15 41.80 3.27
5898 6061 2.241941 TGATGGCCCTGAAGCTCATTTA 59.758 45.455 0.00 0.00 0.00 1.40
5911 6074 5.779529 AGCTCATTTATTTGCACTATGGG 57.220 39.130 0.00 0.00 0.00 4.00
5921 8829 1.783250 GCACTATGGGGCTATGGGCT 61.783 60.000 1.86 0.00 41.46 5.19
5974 8882 3.667497 TGTTGCTCTTGTCTCGAGAAT 57.333 42.857 18.55 0.00 0.00 2.40
5985 8893 4.676546 TGTCTCGAGAATAACTGATGCAG 58.323 43.478 18.55 0.00 37.52 4.41
6014 8922 4.455606 AGGCATCCTTGTATTTCTACAGC 58.544 43.478 0.00 0.00 39.00 4.40
6023 8931 8.417106 TCCTTGTATTTCTACAGCTCTAATGAG 58.583 37.037 0.00 0.00 39.00 2.90
6026 8934 9.587772 TTGTATTTCTACAGCTCTAATGAGTTC 57.412 33.333 0.00 0.00 39.00 3.01
6030 8938 4.941873 TCTACAGCTCTAATGAGTTCGACA 59.058 41.667 0.00 0.00 42.13 4.35
6031 8939 3.839293 ACAGCTCTAATGAGTTCGACAC 58.161 45.455 0.00 0.00 42.13 3.67
6067 8976 5.354234 GGTTTGTACACCTCCATATTGACAG 59.646 44.000 0.00 0.00 33.50 3.51
6341 9250 3.793144 GCGTTGCAAGGAGCTCGG 61.793 66.667 22.64 0.68 45.94 4.63
6342 9251 3.793144 CGTTGCAAGGAGCTCGGC 61.793 66.667 13.85 11.87 45.94 5.54
6343 9252 2.359230 GTTGCAAGGAGCTCGGCT 60.359 61.111 19.90 6.02 45.94 5.52
6356 9265 1.803289 TCGGCTCATCACACGAGAG 59.197 57.895 0.00 0.00 31.84 3.20
6402 9311 1.202940 GCTTTCCACCCCTCTTCTGTT 60.203 52.381 0.00 0.00 0.00 3.16
6411 9320 2.814336 CCCCTCTTCTGTTACTGCAAAC 59.186 50.000 0.00 0.00 0.00 2.93
6465 9374 5.888412 GCATTTGCTATTGGATTTTACCG 57.112 39.130 0.00 0.00 38.21 4.02
6468 9378 4.868450 TTGCTATTGGATTTTACCGACG 57.132 40.909 0.00 0.00 0.00 5.12
6470 9380 2.870411 GCTATTGGATTTTACCGACGCT 59.130 45.455 0.00 0.00 0.00 5.07
6484 9394 2.703190 GACGCTTCGAGCTTACAATG 57.297 50.000 0.00 0.00 39.60 2.82
6495 9405 3.935203 GAGCTTACAATGCTAGCTGAACA 59.065 43.478 17.23 0.00 44.78 3.18
6525 9436 8.886719 CATGATGCTGAATTATATACCGATGTT 58.113 33.333 0.00 0.00 0.00 2.71
6526 9437 8.846943 TGATGCTGAATTATATACCGATGTTT 57.153 30.769 0.00 0.00 0.00 2.83
6527 9438 8.720562 TGATGCTGAATTATATACCGATGTTTG 58.279 33.333 0.00 0.00 0.00 2.93
6539 9450 3.317711 ACCGATGTTTGTCAAATGAAGCA 59.682 39.130 0.40 0.00 0.00 3.91
6543 9454 6.403527 CCGATGTTTGTCAAATGAAGCAGATA 60.404 38.462 0.40 0.00 0.00 1.98
6558 9469 6.712095 TGAAGCAGATACATATTTCATGGACC 59.288 38.462 0.00 0.00 0.00 4.46
6559 9470 6.191657 AGCAGATACATATTTCATGGACCA 57.808 37.500 0.00 0.00 0.00 4.02
6562 9473 6.488006 GCAGATACATATTTCATGGACCAGTT 59.512 38.462 0.00 0.00 0.00 3.16
6563 9474 7.661437 GCAGATACATATTTCATGGACCAGTTA 59.339 37.037 0.00 0.00 0.00 2.24
6603 9516 1.494721 AGTCCAATGGTCACAACTGGT 59.505 47.619 0.00 0.00 35.92 4.00
6613 9526 0.110238 CACAACTGGTGTACGCATGC 60.110 55.000 7.91 7.91 42.75 4.06
6614 9527 1.234615 ACAACTGGTGTACGCATGCC 61.235 55.000 13.15 0.00 39.29 4.40
6615 9528 1.072332 AACTGGTGTACGCATGCCA 59.928 52.632 13.15 0.84 0.00 4.92
6616 9529 3.489731 CTGGTGTACGCATGCCAG 58.510 61.111 13.15 8.55 41.89 4.85
6617 9530 1.375908 CTGGTGTACGCATGCCAGT 60.376 57.895 13.15 7.84 42.47 4.00
6618 9531 1.638388 CTGGTGTACGCATGCCAGTG 61.638 60.000 13.15 0.00 42.47 3.66
6619 9532 2.398554 GGTGTACGCATGCCAGTGG 61.399 63.158 13.15 4.20 0.00 4.00
6635 9548 2.228822 CAGTGGACGCCTTAATTTTGCT 59.771 45.455 0.00 0.00 0.00 3.91
6715 9634 5.473066 GCATTTAGCCCATTGGAATATGT 57.527 39.130 3.62 0.00 37.23 2.29
6723 9642 4.559300 GCCCATTGGAATATGTATGCACAC 60.559 45.833 3.62 0.00 37.54 3.82
6739 9658 2.375110 CACACGTGCATCAAGTTTCAC 58.625 47.619 17.22 0.00 0.00 3.18
6743 9662 2.033299 ACGTGCATCAAGTTTCACAAGG 59.967 45.455 0.00 0.00 0.00 3.61
6745 9664 3.489059 CGTGCATCAAGTTTCACAAGGTT 60.489 43.478 0.00 0.00 0.00 3.50
6746 9665 4.260990 CGTGCATCAAGTTTCACAAGGTTA 60.261 41.667 0.00 0.00 0.00 2.85
6747 9666 5.587289 GTGCATCAAGTTTCACAAGGTTAA 58.413 37.500 0.00 0.00 0.00 2.01
6748 9667 6.215845 GTGCATCAAGTTTCACAAGGTTAAT 58.784 36.000 0.00 0.00 0.00 1.40
6750 9669 5.119125 GCATCAAGTTTCACAAGGTTAATGC 59.881 40.000 0.00 0.00 0.00 3.56
6751 9670 6.449698 CATCAAGTTTCACAAGGTTAATGCT 58.550 36.000 0.00 0.00 0.00 3.79
6753 9672 7.759489 TCAAGTTTCACAAGGTTAATGCTAT 57.241 32.000 0.00 0.00 0.00 2.97
6755 9674 8.081633 TCAAGTTTCACAAGGTTAATGCTATTG 58.918 33.333 0.00 0.00 0.00 1.90
6757 9676 7.593825 AGTTTCACAAGGTTAATGCTATTGAC 58.406 34.615 0.00 0.00 0.00 3.18
6758 9677 7.448469 AGTTTCACAAGGTTAATGCTATTGACT 59.552 33.333 0.00 0.00 0.00 3.41
6759 9678 8.726988 GTTTCACAAGGTTAATGCTATTGACTA 58.273 33.333 0.00 0.00 0.00 2.59
6760 9679 8.856153 TTCACAAGGTTAATGCTATTGACTAA 57.144 30.769 0.00 0.00 0.00 2.24
6764 9683 9.113838 ACAAGGTTAATGCTATTGACTAAGATG 57.886 33.333 0.00 0.00 0.00 2.90
6765 9684 7.736447 AGGTTAATGCTATTGACTAAGATGC 57.264 36.000 0.00 0.00 0.00 3.91
6767 9686 7.941238 AGGTTAATGCTATTGACTAAGATGCAT 59.059 33.333 0.00 0.00 40.72 3.96
6768 9687 8.233190 GGTTAATGCTATTGACTAAGATGCATC 58.767 37.037 19.37 19.37 38.49 3.91
6790 9717 4.867047 TCTACGGTACTTAGACTTGTCTCG 59.133 45.833 6.55 6.21 34.17 4.04
6795 9722 4.455190 GGTACTTAGACTTGTCTCGTGAGT 59.545 45.833 6.55 9.48 0.00 3.41
6796 9723 4.491234 ACTTAGACTTGTCTCGTGAGTG 57.509 45.455 6.55 0.00 0.00 3.51
6837 9764 5.313712 CACTACAATTGTGGTTAGGGTTCT 58.686 41.667 23.37 0.00 37.67 3.01
6852 9779 2.908351 GGGTTCTAAAGGACCACCACTA 59.092 50.000 9.68 0.00 38.94 2.74
6899 9826 8.967664 ACTACTACTAGAGATTTCATCGAACT 57.032 34.615 0.00 0.00 0.00 3.01
6918 9845 0.104120 TGCTCGTGTGCACAGTAAGT 59.896 50.000 22.40 0.00 38.12 2.24
6945 9872 2.740055 GCATATGCCTCGCCGGAG 60.740 66.667 17.26 0.00 40.14 4.63
6946 9873 2.737180 CATATGCCTCGCCGGAGT 59.263 61.111 5.05 0.00 38.70 3.85
6947 9874 1.373497 CATATGCCTCGCCGGAGTC 60.373 63.158 5.05 0.00 38.70 3.36
6948 9875 1.832608 ATATGCCTCGCCGGAGTCA 60.833 57.895 5.05 2.49 38.70 3.41
6949 9876 1.399744 ATATGCCTCGCCGGAGTCAA 61.400 55.000 5.05 0.00 38.70 3.18
6950 9877 1.609635 TATGCCTCGCCGGAGTCAAA 61.610 55.000 5.05 0.00 38.70 2.69
6951 9878 2.815647 GCCTCGCCGGAGTCAAAG 60.816 66.667 5.05 0.00 38.70 2.77
6952 9879 2.970639 CCTCGCCGGAGTCAAAGA 59.029 61.111 5.05 0.00 38.70 2.52
6953 9880 1.292223 CCTCGCCGGAGTCAAAGAA 59.708 57.895 5.05 0.00 38.70 2.52
6954 9881 0.737715 CCTCGCCGGAGTCAAAGAAG 60.738 60.000 5.05 0.00 38.70 2.85
6955 9882 0.737715 CTCGCCGGAGTCAAAGAAGG 60.738 60.000 5.05 0.00 35.48 3.46
6956 9883 1.183030 TCGCCGGAGTCAAAGAAGGA 61.183 55.000 5.05 0.00 0.00 3.36
6957 9884 0.737715 CGCCGGAGTCAAAGAAGGAG 60.738 60.000 5.05 0.00 0.00 3.69
6985 9912 2.428085 GGAGGAGGCGGAGGTCTTC 61.428 68.421 0.00 0.00 0.00 2.87
7028 9955 2.511145 CGAGAGGAAGCTGCAGGC 60.511 66.667 17.12 7.98 42.19 4.85
7052 9979 2.431683 GGGGTGCTCAACTGCTCA 59.568 61.111 0.00 0.00 0.00 4.26
7147 10077 2.993264 GGGGAGGAACGGACGACA 60.993 66.667 0.00 0.00 0.00 4.35
7163 10093 1.303888 ACACCAATGCCTGCAGGAG 60.304 57.895 37.21 20.62 37.39 3.69
7164 10094 2.050350 CACCAATGCCTGCAGGAGG 61.050 63.158 37.21 29.30 46.13 4.30
7194 10127 2.357034 CGTGGGTGTCGACAAGGG 60.357 66.667 21.95 4.40 0.00 3.95
7218 10151 0.179150 CGGAGCTTGTCGAAGAGGAG 60.179 60.000 0.00 0.00 36.95 3.69
7220 10153 1.135228 GGAGCTTGTCGAAGAGGAGAC 60.135 57.143 0.00 0.00 36.95 3.36
7221 10154 0.892063 AGCTTGTCGAAGAGGAGACC 59.108 55.000 0.00 0.00 36.95 3.85
7223 10156 0.456995 CTTGTCGAAGAGGAGACCGC 60.457 60.000 0.00 0.00 36.95 5.68
7252 10243 2.586357 GCGGAGAAGATGACGGCC 60.586 66.667 0.00 0.00 0.00 6.13
7254 10245 1.218047 CGGAGAAGATGACGGCCAA 59.782 57.895 2.24 0.00 0.00 4.52
7301 10292 0.917333 ATTCCTTTGGCGGGAGGGTA 60.917 55.000 1.50 0.00 34.06 3.69
7302 10293 1.135068 TTCCTTTGGCGGGAGGGTAA 61.135 55.000 1.50 0.00 34.06 2.85
7303 10294 1.378119 CCTTTGGCGGGAGGGTAAC 60.378 63.158 0.00 0.00 0.00 2.50
7304 10295 1.683441 CTTTGGCGGGAGGGTAACT 59.317 57.895 0.00 0.00 0.00 2.24
7338 10329 2.590007 GCTAGGACATGGCGGCTG 60.590 66.667 11.43 8.69 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 7.432869 TGAAGAAGGTTTGTTACAATCCATTG 58.567 34.615 22.46 0.00 43.26 2.82
2 3 7.595819 TGAAGAAGGTTTGTTACAATCCATT 57.404 32.000 22.46 15.21 0.00 3.16
9 10 5.221224 CCAAGCATGAAGAAGGTTTGTTACA 60.221 40.000 0.00 0.00 0.00 2.41
34 35 3.783943 CACCGCGTTCATAGCAATAAAAC 59.216 43.478 4.92 0.00 34.19 2.43
45 46 2.380084 ATACTCAACACCGCGTTCAT 57.620 45.000 4.92 0.00 34.86 2.57
148 149 3.314307 TCTTCATCTAGTGTCCCCGAT 57.686 47.619 0.00 0.00 0.00 4.18
186 187 1.946984 TTCAATGACGTCCCTACCCT 58.053 50.000 14.12 0.00 0.00 4.34
248 249 0.754587 TTGACACCATGTGCTTGCCA 60.755 50.000 0.00 0.00 36.98 4.92
363 364 2.296471 TCTCTCAGACTTTCACCCGTTC 59.704 50.000 0.00 0.00 0.00 3.95
366 367 2.558795 TCTTCTCTCAGACTTTCACCCG 59.441 50.000 0.00 0.00 0.00 5.28
368 369 4.994217 CCTTTCTTCTCTCAGACTTTCACC 59.006 45.833 0.00 0.00 0.00 4.02
380 381 2.545810 CCTCACCTCCCTTTCTTCTCT 58.454 52.381 0.00 0.00 0.00 3.10
430 431 3.257561 CGCCTTGTCGCTCATCGG 61.258 66.667 0.00 0.00 39.05 4.18
455 456 1.531423 TCGAGCTCAACCGAGTTAGT 58.469 50.000 15.40 0.00 41.71 2.24
457 458 1.402456 GCTTCGAGCTCAACCGAGTTA 60.402 52.381 15.40 0.00 41.71 2.24
458 459 0.667792 GCTTCGAGCTCAACCGAGTT 60.668 55.000 15.40 0.00 41.71 3.01
489 490 2.311688 ATCGCCGATGTGTCTTCCCC 62.312 60.000 0.00 0.00 0.00 4.81
501 502 1.374125 CCACTTGTGTCATCGCCGA 60.374 57.895 0.00 0.00 0.00 5.54
514 515 2.384029 AGTCTTAGACTCCCCTCCACTT 59.616 50.000 9.37 0.00 38.71 3.16
554 555 4.457496 AGCATCGACAGCCCACCG 62.457 66.667 7.97 0.00 0.00 4.94
567 568 3.022406 GCCTTCATCCTTTTCTCAGCAT 58.978 45.455 0.00 0.00 0.00 3.79
593 594 2.531685 CCTCTCCCCCACCACCAA 60.532 66.667 0.00 0.00 0.00 3.67
606 607 1.766869 GCTTTCCTATAGGCCCCCTCT 60.767 57.143 14.50 0.00 34.61 3.69
607 608 0.693622 GCTTTCCTATAGGCCCCCTC 59.306 60.000 14.50 0.00 34.61 4.30
618 619 3.302161 TGCTATTACCCGAGCTTTCCTA 58.698 45.455 0.00 0.00 39.54 2.94
634 635 2.472059 CGCCACGCCATGTTGCTAT 61.472 57.895 0.00 0.00 37.10 2.97
707 708 6.078456 TCTTCCAACCATCCAATCTAATGT 57.922 37.500 0.00 0.00 0.00 2.71
723 724 1.909302 CTCCACTAGCCCTTCTTCCAA 59.091 52.381 0.00 0.00 0.00 3.53
728 729 1.362932 TCTTCCTCCACTAGCCCTTCT 59.637 52.381 0.00 0.00 0.00 2.85
729 730 1.867363 TCTTCCTCCACTAGCCCTTC 58.133 55.000 0.00 0.00 0.00 3.46
730 731 2.192263 CTTCTTCCTCCACTAGCCCTT 58.808 52.381 0.00 0.00 0.00 3.95
734 735 4.382147 CCTGTAACTTCTTCCTCCACTAGC 60.382 50.000 0.00 0.00 0.00 3.42
739 740 2.567615 GCTCCTGTAACTTCTTCCTCCA 59.432 50.000 0.00 0.00 0.00 3.86
740 741 2.093394 GGCTCCTGTAACTTCTTCCTCC 60.093 54.545 0.00 0.00 0.00 4.30
750 751 6.584185 TTTAAATTCAAGGGCTCCTGTAAC 57.416 37.500 0.00 0.00 32.13 2.50
753 754 5.332743 TGATTTAAATTCAAGGGCTCCTGT 58.667 37.500 1.43 0.00 32.13 4.00
757 758 5.576774 CCGTTTGATTTAAATTCAAGGGCTC 59.423 40.000 14.32 0.00 0.00 4.70
758 759 5.478407 CCGTTTGATTTAAATTCAAGGGCT 58.522 37.500 14.32 0.00 0.00 5.19
759 760 4.092821 GCCGTTTGATTTAAATTCAAGGGC 59.907 41.667 25.55 25.55 35.95 5.19
760 761 5.478407 AGCCGTTTGATTTAAATTCAAGGG 58.522 37.500 18.74 18.74 0.00 3.95
768 769 8.491950 GCTGAATTTTTAGCCGTTTGATTTAAA 58.508 29.630 0.00 0.00 33.89 1.52
769 770 7.870445 AGCTGAATTTTTAGCCGTTTGATTTAA 59.130 29.630 3.70 0.00 40.76 1.52
770 771 7.375053 AGCTGAATTTTTAGCCGTTTGATTTA 58.625 30.769 3.70 0.00 40.76 1.40
771 772 6.223120 AGCTGAATTTTTAGCCGTTTGATTT 58.777 32.000 3.70 0.00 40.76 2.17
772 773 5.783111 AGCTGAATTTTTAGCCGTTTGATT 58.217 33.333 3.70 0.00 40.76 2.57
773 774 5.391312 AGCTGAATTTTTAGCCGTTTGAT 57.609 34.783 3.70 0.00 40.76 2.57
774 775 4.846779 AGCTGAATTTTTAGCCGTTTGA 57.153 36.364 3.70 0.00 40.76 2.69
775 776 5.918011 TGTAAGCTGAATTTTTAGCCGTTTG 59.082 36.000 3.70 0.00 40.76 2.93
776 777 6.079424 TGTAAGCTGAATTTTTAGCCGTTT 57.921 33.333 3.70 0.00 40.76 3.60
777 778 5.699097 TGTAAGCTGAATTTTTAGCCGTT 57.301 34.783 3.70 0.00 40.76 4.44
778 779 5.897377 ATGTAAGCTGAATTTTTAGCCGT 57.103 34.783 3.70 0.00 40.76 5.68
779 780 7.581011 AAAATGTAAGCTGAATTTTTAGCCG 57.419 32.000 3.70 0.00 40.76 5.52
852 853 0.104120 TCGGGTAGATTGCATCCACG 59.896 55.000 0.00 0.00 0.00 4.94
870 871 1.874872 TCCGAATTTGTCCGTTTGGTC 59.125 47.619 0.00 0.00 36.30 4.02
891 892 5.402270 GGAAATCAAATGTGAGTTTGGTTCG 59.598 40.000 0.00 0.00 41.92 3.95
954 955 2.440385 CTTCACTCACTGGCTGCCGA 62.440 60.000 14.98 4.32 0.00 5.54
956 957 0.952984 GACTTCACTCACTGGCTGCC 60.953 60.000 12.87 12.87 0.00 4.85
958 959 1.069823 ACTGACTTCACTCACTGGCTG 59.930 52.381 0.00 0.00 0.00 4.85
959 960 1.418334 ACTGACTTCACTCACTGGCT 58.582 50.000 0.00 0.00 0.00 4.75
960 961 3.243907 ACTTACTGACTTCACTCACTGGC 60.244 47.826 0.00 0.00 0.00 4.85
961 962 4.038042 TGACTTACTGACTTCACTCACTGG 59.962 45.833 0.00 0.00 0.00 4.00
962 963 4.979197 GTGACTTACTGACTTCACTCACTG 59.021 45.833 0.00 0.00 36.29 3.66
963 964 4.038162 GGTGACTTACTGACTTCACTCACT 59.962 45.833 0.00 0.00 38.73 3.41
964 965 4.202121 TGGTGACTTACTGACTTCACTCAC 60.202 45.833 0.00 0.00 38.73 3.51
965 966 3.958147 TGGTGACTTACTGACTTCACTCA 59.042 43.478 0.00 0.00 38.73 3.41
966 967 4.202121 TGTGGTGACTTACTGACTTCACTC 60.202 45.833 0.00 0.00 38.73 3.51
967 968 3.704566 TGTGGTGACTTACTGACTTCACT 59.295 43.478 0.00 0.00 38.73 3.41
968 969 4.051922 CTGTGGTGACTTACTGACTTCAC 58.948 47.826 0.00 0.00 38.11 3.18
969 970 3.958147 TCTGTGGTGACTTACTGACTTCA 59.042 43.478 0.00 0.00 0.00 3.02
970 971 4.299978 GTCTGTGGTGACTTACTGACTTC 58.700 47.826 16.55 0.36 40.46 3.01
971 972 3.069729 GGTCTGTGGTGACTTACTGACTT 59.930 47.826 20.10 0.00 42.12 3.01
972 973 2.628657 GGTCTGTGGTGACTTACTGACT 59.371 50.000 20.10 0.00 42.12 3.41
973 974 2.364324 TGGTCTGTGGTGACTTACTGAC 59.636 50.000 15.97 15.97 41.89 3.51
974 975 2.364324 GTGGTCTGTGGTGACTTACTGA 59.636 50.000 0.00 0.00 37.16 3.41
975 976 2.102420 TGTGGTCTGTGGTGACTTACTG 59.898 50.000 0.00 0.00 37.16 2.74
976 977 2.102588 GTGTGGTCTGTGGTGACTTACT 59.897 50.000 0.00 0.00 37.16 2.24
977 978 2.159014 TGTGTGGTCTGTGGTGACTTAC 60.159 50.000 0.00 0.00 37.16 2.34
978 979 2.112190 TGTGTGGTCTGTGGTGACTTA 58.888 47.619 0.00 0.00 37.16 2.24
1624 1651 7.857456 TCTCATAGCCTAAATTGTTCCACTAA 58.143 34.615 0.00 0.00 0.00 2.24
1643 1670 8.913487 ATTTGTCATAGCATTCACATCTCATA 57.087 30.769 0.00 0.00 0.00 2.15
1703 1730 3.055613 GGTGAACAAACCGTACAACAC 57.944 47.619 0.00 0.00 0.00 3.32
1754 1783 1.183030 CCTACCCACACAGACCACGA 61.183 60.000 0.00 0.00 0.00 4.35
1762 1791 2.749682 CTGCTGCCTACCCACACA 59.250 61.111 0.00 0.00 0.00 3.72
1785 1814 6.095720 ACCCAATCTAGTTCTCTAGTTTCTCG 59.904 42.308 2.84 0.00 42.88 4.04
1842 1871 4.256110 TGTATCATTGAGGACAAGCAGTG 58.744 43.478 2.53 0.00 39.46 3.66
1945 1976 9.750125 GGTTAAATAGAAAATCAATCCATGTCC 57.250 33.333 0.00 0.00 0.00 4.02
1950 1981 9.753674 ACAGAGGTTAAATAGAAAATCAATCCA 57.246 29.630 0.00 0.00 0.00 3.41
2085 2126 2.558359 AGGAACAGCAGGTAAATTGTGC 59.442 45.455 0.00 0.00 37.48 4.57
2627 2676 2.191513 CGGGTCGAGGCGATTAGGA 61.192 63.158 0.00 0.00 38.42 2.94
2867 2922 3.636231 CGAAGCCCACCACCTCCA 61.636 66.667 0.00 0.00 0.00 3.86
2911 2966 0.041535 ACATCACCATGGCCACCAAT 59.958 50.000 8.16 0.00 36.95 3.16
2955 3010 2.109799 CCGGATCCGCTGCAGATT 59.890 61.111 29.12 0.00 38.24 2.40
2974 3029 1.006571 GTGACCGAAGCCACGAAGA 60.007 57.895 0.00 0.00 35.09 2.87
3007 3062 3.197790 CACCGGATCTGCAAGGCG 61.198 66.667 9.46 0.00 0.00 5.52
3427 3486 1.143481 ACGCCATCATCATCCAATCCA 59.857 47.619 0.00 0.00 0.00 3.41
3432 3491 3.614870 CGATAGAACGCCATCATCATCCA 60.615 47.826 0.00 0.00 39.76 3.41
3658 3717 4.713814 TCAGATCATGTTGAGGCTTCTACT 59.286 41.667 11.33 0.00 31.48 2.57
3672 3731 6.416631 TCTTCCATAGGTCTTCAGATCATG 57.583 41.667 0.00 0.00 0.00 3.07
3688 3747 2.203070 GTCGCCGCCATCTTCCAT 60.203 61.111 0.00 0.00 0.00 3.41
3920 3979 7.928706 CACTTTATTGATTATTCTCGAGGACCT 59.071 37.037 13.56 0.00 0.00 3.85
4005 4064 3.410631 TTTCTTCACGTCATTAGGCCA 57.589 42.857 5.01 0.00 0.00 5.36
4008 4067 6.494893 TTGGAATTTCTTCACGTCATTAGG 57.505 37.500 0.00 0.00 32.70 2.69
4009 4068 9.490663 GTATTTGGAATTTCTTCACGTCATTAG 57.509 33.333 0.00 0.00 32.70 1.73
4016 4075 4.658071 CCGGTATTTGGAATTTCTTCACG 58.342 43.478 0.00 0.00 32.70 4.35
4161 4222 0.384309 CGCCGCATCCTAACTCTACA 59.616 55.000 0.00 0.00 0.00 2.74
4196 4257 7.440856 GTGTGATTTAAGAAATGCCAAAAGGAA 59.559 33.333 0.00 0.00 0.00 3.36
4205 4266 7.928908 TGAAGTTGTGTGATTTAAGAAATGC 57.071 32.000 0.00 0.00 0.00 3.56
4513 4604 6.084277 CCGAAATTTGTAGCCAAGAGTAAAC 58.916 40.000 0.00 0.00 0.00 2.01
4516 4607 4.901868 ACCGAAATTTGTAGCCAAGAGTA 58.098 39.130 0.00 0.00 0.00 2.59
4517 4608 3.751518 ACCGAAATTTGTAGCCAAGAGT 58.248 40.909 0.00 0.00 0.00 3.24
4518 4609 5.470845 CTACCGAAATTTGTAGCCAAGAG 57.529 43.478 0.00 0.00 0.00 2.85
4591 4682 9.935241 TTAACAATTTAATATCAAAGCAGCCAA 57.065 25.926 0.00 0.00 0.00 4.52
4654 4745 6.147821 CGTAATCCACAAGTTTCTGAACTGAT 59.852 38.462 0.00 0.00 45.18 2.90
4678 4774 5.458015 TGGATCGATAATGCTACACTTACG 58.542 41.667 0.00 0.00 0.00 3.18
4679 4775 5.864474 CCTGGATCGATAATGCTACACTTAC 59.136 44.000 0.00 0.00 0.00 2.34
4680 4776 5.047306 CCCTGGATCGATAATGCTACACTTA 60.047 44.000 0.00 0.00 0.00 2.24
4681 4777 4.262635 CCCTGGATCGATAATGCTACACTT 60.263 45.833 0.00 0.00 0.00 3.16
4682 4778 3.259374 CCCTGGATCGATAATGCTACACT 59.741 47.826 0.00 0.00 0.00 3.55
4826 4932 7.807977 AGGAAAGCAATGTATACCAGTAATG 57.192 36.000 0.00 0.00 0.00 1.90
4948 5084 7.330262 ACCATGATTCCGAAATAAAAATGCTT 58.670 30.769 0.00 0.00 0.00 3.91
5609 5758 3.023119 ACAATCAAACACAAGCCTGACA 58.977 40.909 0.00 0.00 0.00 3.58
5711 5860 9.669353 CAAGCAATCACAATTAGTCCAATATAC 57.331 33.333 0.00 0.00 0.00 1.47
5712 5861 9.625747 TCAAGCAATCACAATTAGTCCAATATA 57.374 29.630 0.00 0.00 0.00 0.86
5713 5862 8.523915 TCAAGCAATCACAATTAGTCCAATAT 57.476 30.769 0.00 0.00 0.00 1.28
5729 5878 5.529060 AGAACGGATAAGGAATCAAGCAATC 59.471 40.000 0.00 0.00 36.20 2.67
5801 5959 1.135199 AGAGCAAAATGGCGAGCAATG 60.135 47.619 0.00 0.00 39.27 2.82
5812 5970 3.152341 CAACCACAGGAGAGAGCAAAAT 58.848 45.455 0.00 0.00 0.00 1.82
5816 5974 0.394192 CACAACCACAGGAGAGAGCA 59.606 55.000 0.00 0.00 0.00 4.26
5859 6022 5.627503 GCCATCACTTAAAAGGCCATTCATT 60.628 40.000 5.01 0.00 39.42 2.57
5898 6061 2.491455 CCCATAGCCCCATAGTGCAAAT 60.491 50.000 0.00 0.00 0.00 2.32
5911 6074 3.754965 TGATTTCATGTAGCCCATAGCC 58.245 45.455 0.00 0.00 45.47 3.93
5974 8882 4.842574 TGCCTAAATGTCTGCATCAGTTA 58.157 39.130 10.07 10.07 33.50 2.24
5985 8893 7.573968 AGAAATACAAGGATGCCTAAATGTC 57.426 36.000 0.00 0.00 31.13 3.06
6026 8934 4.210537 ACAAACCTTAACTGATTCGTGTCG 59.789 41.667 0.00 0.00 0.00 4.35
6030 8938 5.467735 GGTGTACAAACCTTAACTGATTCGT 59.532 40.000 0.00 0.00 37.24 3.85
6031 8939 5.923665 GGTGTACAAACCTTAACTGATTCG 58.076 41.667 0.00 0.00 37.24 3.34
6067 8976 8.244113 CCTCACTTTCCTGAAATATAACCAAAC 58.756 37.037 0.00 0.00 0.00 2.93
6341 9250 1.468908 CCTGACTCTCGTGTGATGAGC 60.469 57.143 0.00 0.00 31.39 4.26
6342 9251 2.087646 TCCTGACTCTCGTGTGATGAG 58.912 52.381 0.00 0.00 32.57 2.90
6343 9252 2.200373 TCCTGACTCTCGTGTGATGA 57.800 50.000 0.00 0.00 0.00 2.92
6348 9257 2.490115 GTCATCTTCCTGACTCTCGTGT 59.510 50.000 0.00 0.00 41.87 4.49
6356 9265 8.001881 TCACTTCTAATAGTCATCTTCCTGAC 57.998 38.462 0.00 0.00 44.78 3.51
6402 9311 4.682778 AGTACCTCAAGTGTTTGCAGTA 57.317 40.909 0.00 0.00 34.21 2.74
6411 9320 9.360093 CAGAATTCTTAGTAAGTACCTCAAGTG 57.640 37.037 4.86 0.00 0.00 3.16
6443 9352 5.458779 GTCGGTAAAATCCAATAGCAAATGC 59.541 40.000 0.00 0.00 42.49 3.56
6452 9361 2.350498 CGAAGCGTCGGTAAAATCCAAT 59.650 45.455 14.59 0.00 43.81 3.16
6468 9378 2.033322 GCTAGCATTGTAAGCTCGAAGC 60.033 50.000 10.63 0.00 42.32 3.86
6470 9380 3.119137 TCAGCTAGCATTGTAAGCTCGAA 60.119 43.478 18.83 0.56 44.58 3.71
6475 9385 4.889832 ATGTTCAGCTAGCATTGTAAGC 57.110 40.909 18.83 4.73 36.48 3.09
6483 9393 4.694037 GCATCATGATATGTTCAGCTAGCA 59.306 41.667 18.83 0.00 37.89 3.49
6484 9394 4.936411 AGCATCATGATATGTTCAGCTAGC 59.064 41.667 8.15 6.62 37.89 3.42
6517 9428 3.317711 TGCTTCATTTGACAAACATCGGT 59.682 39.130 1.94 0.00 0.00 4.69
6526 9437 9.176460 TGAAATATGTATCTGCTTCATTTGACA 57.824 29.630 0.00 0.00 0.00 3.58
6543 9454 7.888021 TCAGTTTAACTGGTCCATGAAATATGT 59.112 33.333 22.82 0.00 45.94 2.29
6566 9477 5.694231 TGGACTGTCATTCAAACAATCAG 57.306 39.130 10.38 0.00 0.00 2.90
6574 9485 3.820467 GTGACCATTGGACTGTCATTCAA 59.180 43.478 10.37 5.36 40.75 2.69
6578 9489 3.149196 GTTGTGACCATTGGACTGTCAT 58.851 45.455 10.37 0.00 40.75 3.06
6603 9516 1.375396 GTCCACTGGCATGCGTACA 60.375 57.895 12.44 3.06 0.00 2.90
6604 9517 2.452813 CGTCCACTGGCATGCGTAC 61.453 63.158 12.44 0.00 0.00 3.67
6605 9518 2.125713 CGTCCACTGGCATGCGTA 60.126 61.111 12.44 2.02 0.00 4.42
6609 9522 0.676466 TTAAGGCGTCCACTGGCATG 60.676 55.000 0.00 0.00 0.00 4.06
6610 9523 0.255890 ATTAAGGCGTCCACTGGCAT 59.744 50.000 0.00 0.00 0.00 4.40
6611 9524 0.037590 AATTAAGGCGTCCACTGGCA 59.962 50.000 0.00 0.00 0.00 4.92
6612 9525 1.173913 AAATTAAGGCGTCCACTGGC 58.826 50.000 0.00 0.00 0.00 4.85
6613 9526 2.671070 GCAAAATTAAGGCGTCCACTGG 60.671 50.000 0.00 0.00 0.00 4.00
6614 9527 2.228822 AGCAAAATTAAGGCGTCCACTG 59.771 45.455 0.00 0.00 0.00 3.66
6615 9528 2.228822 CAGCAAAATTAAGGCGTCCACT 59.771 45.455 0.00 0.00 0.00 4.00
6616 9529 2.595386 CAGCAAAATTAAGGCGTCCAC 58.405 47.619 0.00 0.00 0.00 4.02
6617 9530 1.543802 CCAGCAAAATTAAGGCGTCCA 59.456 47.619 0.00 0.00 0.00 4.02
6618 9531 1.735700 GCCAGCAAAATTAAGGCGTCC 60.736 52.381 0.00 0.00 35.42 4.79
6619 9532 1.629013 GCCAGCAAAATTAAGGCGTC 58.371 50.000 0.00 0.00 35.42 5.19
6664 9578 5.529800 TGAAGGTGAATGATATGCTGTCATG 59.470 40.000 0.00 0.00 36.49 3.07
6671 9585 4.024218 GCTCAGTGAAGGTGAATGATATGC 60.024 45.833 0.00 0.00 0.00 3.14
6677 9596 4.778534 AAATGCTCAGTGAAGGTGAATG 57.221 40.909 0.00 0.00 0.00 2.67
6723 9642 2.033299 ACCTTGTGAAACTTGATGCACG 59.967 45.455 0.00 0.00 38.04 5.34
6739 9658 8.072567 GCATCTTAGTCAATAGCATTAACCTTG 58.927 37.037 0.00 0.00 0.00 3.61
6743 9662 8.997323 AGATGCATCTTAGTCAATAGCATTAAC 58.003 33.333 23.75 0.00 40.86 2.01
6745 9664 9.645059 GTAGATGCATCTTAGTCAATAGCATTA 57.355 33.333 32.94 7.52 40.86 1.90
6746 9665 7.330454 CGTAGATGCATCTTAGTCAATAGCATT 59.670 37.037 32.94 6.84 40.86 3.56
6747 9666 6.810676 CGTAGATGCATCTTAGTCAATAGCAT 59.189 38.462 32.94 7.50 43.17 3.79
6748 9667 6.152379 CGTAGATGCATCTTAGTCAATAGCA 58.848 40.000 32.94 8.86 38.32 3.49
6750 9669 6.682746 ACCGTAGATGCATCTTAGTCAATAG 58.317 40.000 32.94 15.10 38.32 1.73
6751 9670 6.650427 ACCGTAGATGCATCTTAGTCAATA 57.350 37.500 32.94 10.91 38.32 1.90
6753 9672 5.593095 AGTACCGTAGATGCATCTTAGTCAA 59.407 40.000 32.94 12.45 38.32 3.18
6755 9674 5.692613 AGTACCGTAGATGCATCTTAGTC 57.307 43.478 32.94 19.00 38.32 2.59
6757 9676 7.173562 AGTCTAAGTACCGTAGATGCATCTTAG 59.826 40.741 32.94 24.67 38.32 2.18
6758 9677 6.996879 AGTCTAAGTACCGTAGATGCATCTTA 59.003 38.462 32.94 17.08 38.32 2.10
6759 9678 5.828859 AGTCTAAGTACCGTAGATGCATCTT 59.171 40.000 32.94 18.13 38.32 2.40
6760 9679 5.378332 AGTCTAAGTACCGTAGATGCATCT 58.622 41.667 30.85 30.85 40.86 2.90
6764 9683 5.066246 AGACAAGTCTAAGTACCGTAGATGC 59.934 44.000 0.00 0.00 38.35 3.91
6765 9684 6.509837 CGAGACAAGTCTAAGTACCGTAGATG 60.510 46.154 2.15 5.60 40.61 2.90
6767 9686 4.867047 CGAGACAAGTCTAAGTACCGTAGA 59.133 45.833 2.15 0.73 40.61 2.59
6768 9687 4.629200 ACGAGACAAGTCTAAGTACCGTAG 59.371 45.833 2.15 0.00 40.61 3.51
6790 9717 8.175716 GTGGTTTTATGCTATTTACTCACTCAC 58.824 37.037 0.00 0.00 0.00 3.51
6795 9722 9.727859 TTGTAGTGGTTTTATGCTATTTACTCA 57.272 29.630 0.00 0.00 0.00 3.41
6837 9764 8.943594 AAAATTTGTATAGTGGTGGTCCTTTA 57.056 30.769 0.00 0.00 34.23 1.85
6876 9803 7.499563 AGCAGTTCGATGAAATCTCTAGTAGTA 59.500 37.037 0.00 0.00 42.58 1.82
6877 9804 6.320164 AGCAGTTCGATGAAATCTCTAGTAGT 59.680 38.462 0.00 0.00 42.58 2.73
6878 9805 6.734137 AGCAGTTCGATGAAATCTCTAGTAG 58.266 40.000 0.00 0.00 42.58 2.57
6879 9806 6.701145 AGCAGTTCGATGAAATCTCTAGTA 57.299 37.500 0.00 0.00 42.58 1.82
6899 9826 0.104120 ACTTACTGTGCACACGAGCA 59.896 50.000 17.42 0.00 43.35 4.26
6918 9845 3.296836 GCATATGCCGCCATGCCA 61.297 61.111 17.26 0.00 41.36 4.92
6934 9861 2.781595 TTCTTTGACTCCGGCGAGGC 62.782 60.000 9.30 6.88 45.42 4.70
6935 9862 0.737715 CTTCTTTGACTCCGGCGAGG 60.738 60.000 9.30 2.51 40.77 4.63
6936 9863 0.737715 CCTTCTTTGACTCCGGCGAG 60.738 60.000 9.30 6.64 42.32 5.03
6937 9864 1.183030 TCCTTCTTTGACTCCGGCGA 61.183 55.000 9.30 0.00 0.00 5.54
6938 9865 0.737715 CTCCTTCTTTGACTCCGGCG 60.738 60.000 0.00 0.00 0.00 6.46
6939 9866 0.391793 CCTCCTTCTTTGACTCCGGC 60.392 60.000 0.00 0.00 0.00 6.13
6940 9867 0.391793 GCCTCCTTCTTTGACTCCGG 60.392 60.000 0.00 0.00 0.00 5.14
6941 9868 0.610687 AGCCTCCTTCTTTGACTCCG 59.389 55.000 0.00 0.00 0.00 4.63
6942 9869 2.431454 CAAGCCTCCTTCTTTGACTCC 58.569 52.381 0.00 0.00 0.00 3.85
6943 9870 1.809547 GCAAGCCTCCTTCTTTGACTC 59.190 52.381 0.00 0.00 0.00 3.36
6944 9871 1.546548 GGCAAGCCTCCTTCTTTGACT 60.547 52.381 3.29 0.00 0.00 3.41
6945 9872 0.884514 GGCAAGCCTCCTTCTTTGAC 59.115 55.000 3.29 0.00 0.00 3.18
6946 9873 0.606401 CGGCAAGCCTCCTTCTTTGA 60.606 55.000 9.73 0.00 0.00 2.69
6947 9874 1.589716 CCGGCAAGCCTCCTTCTTTG 61.590 60.000 9.73 0.00 0.00 2.77
6948 9875 1.303643 CCGGCAAGCCTCCTTCTTT 60.304 57.895 9.73 0.00 0.00 2.52
6949 9876 2.352805 CCGGCAAGCCTCCTTCTT 59.647 61.111 9.73 0.00 0.00 2.52
6950 9877 3.721706 CCCGGCAAGCCTCCTTCT 61.722 66.667 9.73 0.00 0.00 2.85
6951 9878 4.803908 CCCCGGCAAGCCTCCTTC 62.804 72.222 9.73 0.00 0.00 3.46
7039 9966 0.886043 AACGCATGAGCAGTTGAGCA 60.886 50.000 0.00 0.00 42.27 4.26
7040 9967 1.061711 CTAACGCATGAGCAGTTGAGC 59.938 52.381 0.00 0.00 42.27 4.26
7041 9968 1.061711 GCTAACGCATGAGCAGTTGAG 59.938 52.381 0.00 0.00 42.27 3.02
7042 9969 1.078709 GCTAACGCATGAGCAGTTGA 58.921 50.000 0.00 0.00 42.27 3.18
7043 9970 1.081892 AGCTAACGCATGAGCAGTTG 58.918 50.000 0.00 0.00 41.36 3.16
7044 9971 1.081892 CAGCTAACGCATGAGCAGTT 58.918 50.000 0.00 0.00 41.36 3.16
7045 9972 1.364626 GCAGCTAACGCATGAGCAGT 61.365 55.000 0.00 0.00 41.36 4.40
7046 9973 1.351012 GCAGCTAACGCATGAGCAG 59.649 57.895 0.00 0.00 41.36 4.24
7052 9979 1.077501 ATGTGGGCAGCTAACGCAT 60.078 52.632 8.61 6.78 39.10 4.73
7122 10052 4.754667 GTTCCTCCCCGTGCGTCC 62.755 72.222 0.00 0.00 0.00 4.79
7126 10056 4.754667 GTCCGTTCCTCCCCGTGC 62.755 72.222 0.00 0.00 0.00 5.34
7127 10057 4.430765 CGTCCGTTCCTCCCCGTG 62.431 72.222 0.00 0.00 0.00 4.94
7128 10058 4.666253 TCGTCCGTTCCTCCCCGT 62.666 66.667 0.00 0.00 0.00 5.28
7129 10059 4.125695 GTCGTCCGTTCCTCCCCG 62.126 72.222 0.00 0.00 0.00 5.73
7130 10060 2.993264 TGTCGTCCGTTCCTCCCC 60.993 66.667 0.00 0.00 0.00 4.81
7131 10061 2.260743 GTGTCGTCCGTTCCTCCC 59.739 66.667 0.00 0.00 0.00 4.30
7132 10062 2.091102 TTGGTGTCGTCCGTTCCTCC 62.091 60.000 0.00 0.00 0.00 4.30
7133 10063 0.037605 ATTGGTGTCGTCCGTTCCTC 60.038 55.000 0.00 0.00 0.00 3.71
7134 10064 0.320421 CATTGGTGTCGTCCGTTCCT 60.320 55.000 0.00 0.00 0.00 3.36
7135 10065 1.908066 GCATTGGTGTCGTCCGTTCC 61.908 60.000 0.00 0.00 0.00 3.62
7147 10077 2.357836 CCTCCTGCAGGCATTGGT 59.642 61.111 28.91 0.00 34.56 3.67
7174 10104 4.612412 TTGTCGACACCCACGGGC 62.612 66.667 19.90 0.00 39.32 6.13
7183 10116 2.738480 CGGTTCCCCTTGTCGACA 59.262 61.111 15.76 15.76 0.00 4.35
7194 10127 1.005394 TTCGACAAGCTCCGGTTCC 60.005 57.895 0.00 0.00 0.00 3.62
7252 10243 2.697425 CGCTTGATCGTCGCCTTG 59.303 61.111 0.00 0.00 0.00 3.61
7301 10292 3.249189 TCTGCCTCGCCCCAAGTT 61.249 61.111 0.00 0.00 0.00 2.66
7302 10293 3.710722 CTCTGCCTCGCCCCAAGT 61.711 66.667 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.