Multiple sequence alignment - TraesCS2A01G438000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G438000 chr2A 100.000 3655 0 0 1 3655 689620912 689617258 0.000000e+00 6750
1 TraesCS2A01G438000 chr2A 96.603 1207 29 5 1966 3161 507384949 507383744 0.000000e+00 1991
2 TraesCS2A01G438000 chr2A 88.622 1292 109 14 1343 2615 123570655 123571927 0.000000e+00 1537
3 TraesCS2A01G438000 chr2A 95.110 593 19 3 2579 3161 581575335 581574743 0.000000e+00 926
4 TraesCS2A01G438000 chr3A 97.543 2401 52 4 480 2876 728911710 728909313 0.000000e+00 4100
5 TraesCS2A01G438000 chr3A 94.772 593 21 3 2579 3161 171627273 171627865 0.000000e+00 915
6 TraesCS2A01G438000 chr3A 98.394 498 7 1 3159 3655 728897123 728896626 0.000000e+00 874
7 TraesCS2A01G438000 chr3A 98.276 290 5 0 2872 3161 728900057 728899768 3.260000e-140 508
8 TraesCS2A01G438000 chr7A 96.536 2165 70 4 478 2639 47977532 47979694 0.000000e+00 3578
9 TraesCS2A01G438000 chr7A 95.638 1490 59 5 638 2123 705191746 705193233 0.000000e+00 2386
10 TraesCS2A01G438000 chr7A 96.695 1180 29 3 1987 3156 705195534 705196713 0.000000e+00 1954
11 TraesCS2A01G438000 chr7A 96.610 1180 30 4 1987 3156 705199600 705200779 0.000000e+00 1949
12 TraesCS2A01G438000 chr7A 98.384 495 7 1 3159 3653 47995692 47996185 0.000000e+00 869
13 TraesCS2A01G438000 chr7A 95.903 537 12 3 2635 3161 47991960 47992496 0.000000e+00 861
14 TraesCS2A01G438000 chr5D 89.961 1793 135 24 1407 3161 12968086 12969871 0.000000e+00 2272
15 TraesCS2A01G438000 chr5D 88.936 1428 101 34 1780 3160 45352799 45351382 0.000000e+00 1709
16 TraesCS2A01G438000 chr5D 92.265 724 49 6 480 1199 435192756 435193476 0.000000e+00 1020
17 TraesCS2A01G438000 chr5D 92.116 723 52 3 480 1199 442964420 442965140 0.000000e+00 1014
18 TraesCS2A01G438000 chr5D 96.586 498 15 2 3159 3655 43088998 43089494 0.000000e+00 824
19 TraesCS2A01G438000 chr5D 96.386 498 16 2 3159 3655 442969287 442969783 0.000000e+00 819
20 TraesCS2A01G438000 chr3D 88.575 1803 144 34 1410 3161 609329600 609327809 0.000000e+00 2132
21 TraesCS2A01G438000 chr3D 88.990 1426 109 28 1780 3161 31791281 31792702 0.000000e+00 1720
22 TraesCS2A01G438000 chr3D 92.000 725 51 6 480 1201 31790294 31791014 0.000000e+00 1011
23 TraesCS2A01G438000 chr4D 92.197 1525 87 11 1410 2907 54408400 54406881 0.000000e+00 2128
24 TraesCS2A01G438000 chr4D 88.730 1606 116 33 1343 2904 463695876 463697460 0.000000e+00 1903
25 TraesCS2A01G438000 chr4D 92.808 723 46 5 480 1199 54409190 54408471 0.000000e+00 1042
26 TraesCS2A01G438000 chr4D 92.127 724 52 4 479 1199 494026356 494027077 0.000000e+00 1016
27 TraesCS2A01G438000 chr1A 96.686 1207 27 6 1966 3161 319332288 319331084 0.000000e+00 1995
28 TraesCS2A01G438000 chr1A 92.099 1329 80 13 1407 2726 517189663 517190975 0.000000e+00 1849
29 TraesCS2A01G438000 chr1A 96.579 497 17 0 3159 3655 237739445 237738949 0.000000e+00 824
30 TraesCS2A01G438000 chr1A 96.378 497 18 0 3159 3655 394246052 394246548 0.000000e+00 819
31 TraesCS2A01G438000 chr1D 90.234 1413 78 21 1780 3161 280841592 280842975 0.000000e+00 1790
32 TraesCS2A01G438000 chr6D 93.180 1173 51 13 1758 2904 410096554 410097723 0.000000e+00 1696
33 TraesCS2A01G438000 chr6D 96.386 498 16 2 3159 3655 410100415 410100911 0.000000e+00 819
34 TraesCS2A01G438000 chr5A 96.375 938 24 3 2234 3161 19174020 19174957 0.000000e+00 1535
35 TraesCS2A01G438000 chr2D 92.393 723 50 4 480 1199 459776856 459777576 0.000000e+00 1026
36 TraesCS2A01G438000 chr2D 100.000 148 0 0 294 441 547024081 547024228 1.290000e-69 274
37 TraesCS2A01G438000 chr7D 86.824 850 72 20 1343 2154 568978488 568979335 0.000000e+00 913
38 TraesCS2A01G438000 chr4A 96.579 497 17 0 3159 3655 590262527 590262031 0.000000e+00 824
39 TraesCS2A01G438000 chr3B 96.579 497 17 0 3159 3655 39636456 39635960 0.000000e+00 824


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G438000 chr2A 689617258 689620912 3654 True 6750.000000 6750 100.000000 1 3655 1 chr2A.!!$R3 3654
1 TraesCS2A01G438000 chr2A 507383744 507384949 1205 True 1991.000000 1991 96.603000 1966 3161 1 chr2A.!!$R1 1195
2 TraesCS2A01G438000 chr2A 123570655 123571927 1272 False 1537.000000 1537 88.622000 1343 2615 1 chr2A.!!$F1 1272
3 TraesCS2A01G438000 chr2A 581574743 581575335 592 True 926.000000 926 95.110000 2579 3161 1 chr2A.!!$R2 582
4 TraesCS2A01G438000 chr3A 728909313 728911710 2397 True 4100.000000 4100 97.543000 480 2876 1 chr3A.!!$R1 2396
5 TraesCS2A01G438000 chr3A 171627273 171627865 592 False 915.000000 915 94.772000 2579 3161 1 chr3A.!!$F1 582
6 TraesCS2A01G438000 chr3A 728896626 728900057 3431 True 691.000000 874 98.335000 2872 3655 2 chr3A.!!$R2 783
7 TraesCS2A01G438000 chr7A 47977532 47979694 2162 False 3578.000000 3578 96.536000 478 2639 1 chr7A.!!$F1 2161
8 TraesCS2A01G438000 chr7A 705191746 705200779 9033 False 2096.333333 2386 96.314333 638 3156 3 chr7A.!!$F3 2518
9 TraesCS2A01G438000 chr7A 47991960 47996185 4225 False 865.000000 869 97.143500 2635 3653 2 chr7A.!!$F2 1018
10 TraesCS2A01G438000 chr5D 12968086 12969871 1785 False 2272.000000 2272 89.961000 1407 3161 1 chr5D.!!$F1 1754
11 TraesCS2A01G438000 chr5D 45351382 45352799 1417 True 1709.000000 1709 88.936000 1780 3160 1 chr5D.!!$R1 1380
12 TraesCS2A01G438000 chr5D 435192756 435193476 720 False 1020.000000 1020 92.265000 480 1199 1 chr5D.!!$F3 719
13 TraesCS2A01G438000 chr5D 442964420 442965140 720 False 1014.000000 1014 92.116000 480 1199 1 chr5D.!!$F4 719
14 TraesCS2A01G438000 chr3D 609327809 609329600 1791 True 2132.000000 2132 88.575000 1410 3161 1 chr3D.!!$R1 1751
15 TraesCS2A01G438000 chr3D 31790294 31792702 2408 False 1365.500000 1720 90.495000 480 3161 2 chr3D.!!$F1 2681
16 TraesCS2A01G438000 chr4D 463695876 463697460 1584 False 1903.000000 1903 88.730000 1343 2904 1 chr4D.!!$F1 1561
17 TraesCS2A01G438000 chr4D 54406881 54409190 2309 True 1585.000000 2128 92.502500 480 2907 2 chr4D.!!$R1 2427
18 TraesCS2A01G438000 chr4D 494026356 494027077 721 False 1016.000000 1016 92.127000 479 1199 1 chr4D.!!$F2 720
19 TraesCS2A01G438000 chr1A 319331084 319332288 1204 True 1995.000000 1995 96.686000 1966 3161 1 chr1A.!!$R2 1195
20 TraesCS2A01G438000 chr1A 517189663 517190975 1312 False 1849.000000 1849 92.099000 1407 2726 1 chr1A.!!$F2 1319
21 TraesCS2A01G438000 chr1D 280841592 280842975 1383 False 1790.000000 1790 90.234000 1780 3161 1 chr1D.!!$F1 1381
22 TraesCS2A01G438000 chr6D 410096554 410100911 4357 False 1257.500000 1696 94.783000 1758 3655 2 chr6D.!!$F1 1897
23 TraesCS2A01G438000 chr5A 19174020 19174957 937 False 1535.000000 1535 96.375000 2234 3161 1 chr5A.!!$F1 927
24 TraesCS2A01G438000 chr2D 459776856 459777576 720 False 1026.000000 1026 92.393000 480 1199 1 chr2D.!!$F1 719
25 TraesCS2A01G438000 chr7D 568978488 568979335 847 False 913.000000 913 86.824000 1343 2154 1 chr7D.!!$F1 811

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
399 400 0.107456 AAGACAGCCGCCTGGATATG 59.893 55.000 0.0 0.0 43.53 1.78 F
1016 1021 0.584396 TGTTTGTACGAGCTTTGGCG 59.416 50.000 0.0 0.0 44.37 5.69 F
1129 1134 3.612479 GCTTGTCGCATTTGAAGGAACAT 60.612 43.478 0.0 0.0 38.92 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1481 1510 0.761802 TGGGCAAAAACAATCCCACC 59.238 50.000 0.00 0.0 43.40 4.61 R
2018 2116 1.545204 GCATTTTGCATTGTTGGGGGT 60.545 47.619 0.00 0.0 44.26 4.95 R
3068 9742 1.303236 TAACTCGGGGTCGACGGAA 60.303 57.895 9.92 0.0 40.88 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.816580 GTTTCGACTCCTCCAGGAC 57.183 57.895 0.00 0.00 39.78 3.85
19 20 1.258676 GTTTCGACTCCTCCAGGACT 58.741 55.000 0.00 0.00 39.78 3.85
20 21 1.619332 GTTTCGACTCCTCCAGGACTT 59.381 52.381 0.00 0.00 39.78 3.01
21 22 2.824341 GTTTCGACTCCTCCAGGACTTA 59.176 50.000 0.00 0.00 39.78 2.24
22 23 2.125773 TCGACTCCTCCAGGACTTAC 57.874 55.000 0.00 0.00 39.78 2.34
23 24 1.634459 TCGACTCCTCCAGGACTTACT 59.366 52.381 0.00 0.00 39.78 2.24
24 25 1.746220 CGACTCCTCCAGGACTTACTG 59.254 57.143 0.00 0.00 39.78 2.74
25 26 2.618302 CGACTCCTCCAGGACTTACTGA 60.618 54.545 0.00 0.00 40.97 3.41
26 27 3.637769 GACTCCTCCAGGACTTACTGAT 58.362 50.000 0.00 0.00 40.97 2.90
27 28 3.370104 ACTCCTCCAGGACTTACTGATG 58.630 50.000 0.00 0.00 40.97 3.07
28 29 3.011821 ACTCCTCCAGGACTTACTGATGA 59.988 47.826 0.00 0.00 40.97 2.92
29 30 3.636300 CTCCTCCAGGACTTACTGATGAG 59.364 52.174 0.00 0.00 40.97 2.90
30 31 3.011821 TCCTCCAGGACTTACTGATGAGT 59.988 47.826 0.00 0.00 40.97 3.41
31 32 3.131933 CCTCCAGGACTTACTGATGAGTG 59.868 52.174 0.00 0.00 40.97 3.51
32 33 4.019858 CTCCAGGACTTACTGATGAGTGA 58.980 47.826 0.00 0.00 40.97 3.41
33 34 4.614475 TCCAGGACTTACTGATGAGTGAT 58.386 43.478 0.00 0.00 40.97 3.06
34 35 4.403752 TCCAGGACTTACTGATGAGTGATG 59.596 45.833 0.00 0.00 40.97 3.07
35 36 4.442612 CCAGGACTTACTGATGAGTGATGG 60.443 50.000 0.00 0.00 40.97 3.51
36 37 3.133721 AGGACTTACTGATGAGTGATGGC 59.866 47.826 0.00 0.00 33.21 4.40
37 38 3.133721 GGACTTACTGATGAGTGATGGCT 59.866 47.826 0.00 0.00 33.21 4.75
38 39 4.367450 GACTTACTGATGAGTGATGGCTC 58.633 47.826 0.00 0.00 33.21 4.70
39 40 4.029520 ACTTACTGATGAGTGATGGCTCT 58.970 43.478 0.00 0.00 36.51 4.09
40 41 5.204292 ACTTACTGATGAGTGATGGCTCTA 58.796 41.667 0.00 0.00 36.51 2.43
41 42 5.837979 ACTTACTGATGAGTGATGGCTCTAT 59.162 40.000 0.00 0.00 36.51 1.98
42 43 6.326064 ACTTACTGATGAGTGATGGCTCTATT 59.674 38.462 0.00 0.00 36.51 1.73
43 44 4.958509 ACTGATGAGTGATGGCTCTATTG 58.041 43.478 0.00 0.00 36.51 1.90
44 45 4.652881 ACTGATGAGTGATGGCTCTATTGA 59.347 41.667 0.00 0.00 36.51 2.57
45 46 5.307456 ACTGATGAGTGATGGCTCTATTGAT 59.693 40.000 0.00 0.00 36.51 2.57
46 47 6.183361 ACTGATGAGTGATGGCTCTATTGATT 60.183 38.462 0.00 0.00 36.51 2.57
47 48 6.228995 TGATGAGTGATGGCTCTATTGATTC 58.771 40.000 0.00 0.00 36.51 2.52
48 49 4.965814 TGAGTGATGGCTCTATTGATTCC 58.034 43.478 0.00 0.00 36.51 3.01
49 50 4.657504 TGAGTGATGGCTCTATTGATTCCT 59.342 41.667 0.00 0.00 36.51 3.36
50 51 5.221601 TGAGTGATGGCTCTATTGATTCCTC 60.222 44.000 0.00 0.00 36.51 3.71
51 52 4.041444 AGTGATGGCTCTATTGATTCCTCC 59.959 45.833 0.00 0.00 0.00 4.30
52 53 3.975982 TGATGGCTCTATTGATTCCTCCA 59.024 43.478 0.00 0.00 0.00 3.86
53 54 4.041321 TGATGGCTCTATTGATTCCTCCAG 59.959 45.833 0.00 0.00 0.00 3.86
54 55 2.707791 TGGCTCTATTGATTCCTCCAGG 59.292 50.000 0.00 0.00 0.00 4.45
55 56 2.975489 GGCTCTATTGATTCCTCCAGGA 59.025 50.000 0.00 0.00 43.73 3.86
56 57 3.244387 GGCTCTATTGATTCCTCCAGGAC 60.244 52.174 0.00 0.00 45.39 3.85
57 58 3.389329 GCTCTATTGATTCCTCCAGGACA 59.611 47.826 0.00 0.00 45.39 4.02
58 59 4.502950 GCTCTATTGATTCCTCCAGGACAG 60.503 50.000 0.00 0.00 45.39 3.51
59 60 2.725221 ATTGATTCCTCCAGGACAGC 57.275 50.000 0.00 0.00 45.39 4.40
60 61 1.661463 TTGATTCCTCCAGGACAGCT 58.339 50.000 0.00 0.00 45.39 4.24
61 62 1.661463 TGATTCCTCCAGGACAGCTT 58.339 50.000 0.00 0.00 45.39 3.74
62 63 1.556911 TGATTCCTCCAGGACAGCTTC 59.443 52.381 0.00 0.00 45.39 3.86
63 64 1.836802 GATTCCTCCAGGACAGCTTCT 59.163 52.381 0.00 0.00 45.39 2.85
64 65 1.734655 TTCCTCCAGGACAGCTTCTT 58.265 50.000 0.00 0.00 45.39 2.52
65 66 1.270907 TCCTCCAGGACAGCTTCTTC 58.729 55.000 0.00 0.00 39.78 2.87
66 67 1.203237 TCCTCCAGGACAGCTTCTTCT 60.203 52.381 0.00 0.00 39.78 2.85
67 68 1.066286 CCTCCAGGACAGCTTCTTCTG 60.066 57.143 0.00 0.00 39.86 3.02
68 69 0.322975 TCCAGGACAGCTTCTTCTGC 59.677 55.000 0.00 0.00 37.59 4.26
69 70 0.324285 CCAGGACAGCTTCTTCTGCT 59.676 55.000 0.00 0.00 42.06 4.24
70 71 1.552337 CCAGGACAGCTTCTTCTGCTA 59.448 52.381 0.00 0.00 38.92 3.49
71 72 2.418471 CCAGGACAGCTTCTTCTGCTAG 60.418 54.545 0.00 0.00 38.92 3.42
72 73 2.233431 CAGGACAGCTTCTTCTGCTAGT 59.767 50.000 0.00 0.00 38.92 2.57
73 74 2.903135 AGGACAGCTTCTTCTGCTAGTT 59.097 45.455 0.00 0.00 38.92 2.24
74 75 3.326297 AGGACAGCTTCTTCTGCTAGTTT 59.674 43.478 0.00 0.00 38.92 2.66
75 76 4.528596 AGGACAGCTTCTTCTGCTAGTTTA 59.471 41.667 0.00 0.00 38.92 2.01
76 77 5.188751 AGGACAGCTTCTTCTGCTAGTTTAT 59.811 40.000 0.00 0.00 38.92 1.40
77 78 5.293079 GGACAGCTTCTTCTGCTAGTTTATG 59.707 44.000 0.00 0.00 38.92 1.90
78 79 5.799213 ACAGCTTCTTCTGCTAGTTTATGT 58.201 37.500 0.00 0.00 38.92 2.29
79 80 5.641209 ACAGCTTCTTCTGCTAGTTTATGTG 59.359 40.000 0.00 0.00 38.92 3.21
80 81 5.871524 CAGCTTCTTCTGCTAGTTTATGTGA 59.128 40.000 0.00 0.00 38.92 3.58
81 82 6.369890 CAGCTTCTTCTGCTAGTTTATGTGAA 59.630 38.462 0.00 0.00 38.92 3.18
82 83 7.065563 CAGCTTCTTCTGCTAGTTTATGTGAAT 59.934 37.037 0.00 0.00 38.92 2.57
83 84 7.279758 AGCTTCTTCTGCTAGTTTATGTGAATC 59.720 37.037 0.00 0.00 39.21 2.52
84 85 7.279758 GCTTCTTCTGCTAGTTTATGTGAATCT 59.720 37.037 0.00 0.00 0.00 2.40
85 86 9.809096 CTTCTTCTGCTAGTTTATGTGAATCTA 57.191 33.333 0.00 0.00 0.00 1.98
101 102 7.761409 TGTGAATCTAAAGATTACATGTTGCC 58.239 34.615 2.30 0.00 44.14 4.52
102 103 7.392953 TGTGAATCTAAAGATTACATGTTGCCA 59.607 33.333 2.30 0.00 44.14 4.92
103 104 7.698130 GTGAATCTAAAGATTACATGTTGCCAC 59.302 37.037 2.30 3.25 44.14 5.01
104 105 7.392953 TGAATCTAAAGATTACATGTTGCCACA 59.607 33.333 2.30 0.00 44.14 4.17
105 106 6.741992 TCTAAAGATTACATGTTGCCACAG 57.258 37.500 2.30 0.00 35.94 3.66
106 107 6.472016 TCTAAAGATTACATGTTGCCACAGA 58.528 36.000 2.30 0.00 35.94 3.41
107 108 6.939730 TCTAAAGATTACATGTTGCCACAGAA 59.060 34.615 2.30 0.00 35.94 3.02
108 109 6.594788 AAAGATTACATGTTGCCACAGAAT 57.405 33.333 2.30 0.00 35.94 2.40
109 110 5.824904 AGATTACATGTTGCCACAGAATC 57.175 39.130 2.30 4.62 35.94 2.52
110 111 5.255687 AGATTACATGTTGCCACAGAATCA 58.744 37.500 2.30 0.00 35.94 2.57
111 112 5.889853 AGATTACATGTTGCCACAGAATCAT 59.110 36.000 2.30 7.10 35.94 2.45
112 113 5.981088 TTACATGTTGCCACAGAATCATT 57.019 34.783 2.30 0.00 35.94 2.57
113 114 4.182693 ACATGTTGCCACAGAATCATTG 57.817 40.909 0.00 0.00 35.94 2.82
114 115 3.056393 ACATGTTGCCACAGAATCATTGG 60.056 43.478 0.00 0.00 35.94 3.16
115 116 2.596346 TGTTGCCACAGAATCATTGGT 58.404 42.857 2.68 0.00 32.50 3.67
116 117 2.296752 TGTTGCCACAGAATCATTGGTG 59.703 45.455 2.68 0.00 32.50 4.17
117 118 2.557924 GTTGCCACAGAATCATTGGTGA 59.442 45.455 1.18 0.00 39.04 4.02
118 119 2.874014 TGCCACAGAATCATTGGTGAA 58.126 42.857 1.18 0.00 38.01 3.18
119 120 3.229293 TGCCACAGAATCATTGGTGAAA 58.771 40.909 1.18 0.00 38.01 2.69
120 121 3.833650 TGCCACAGAATCATTGGTGAAAT 59.166 39.130 1.18 0.00 38.01 2.17
121 122 4.283978 TGCCACAGAATCATTGGTGAAATT 59.716 37.500 1.18 0.00 38.01 1.82
122 123 4.628333 GCCACAGAATCATTGGTGAAATTG 59.372 41.667 1.18 0.00 38.01 2.32
123 124 5.786311 CCACAGAATCATTGGTGAAATTGT 58.214 37.500 1.18 0.00 38.01 2.71
124 125 6.225318 CCACAGAATCATTGGTGAAATTGTT 58.775 36.000 1.18 0.00 38.01 2.83
125 126 7.377398 CCACAGAATCATTGGTGAAATTGTTA 58.623 34.615 1.18 0.00 38.01 2.41
126 127 7.329226 CCACAGAATCATTGGTGAAATTGTTAC 59.671 37.037 1.18 0.00 38.01 2.50
127 128 7.329226 CACAGAATCATTGGTGAAATTGTTACC 59.671 37.037 0.00 0.00 38.01 2.85
128 129 7.015098 ACAGAATCATTGGTGAAATTGTTACCA 59.985 33.333 4.99 4.99 42.40 3.25
129 130 8.036575 CAGAATCATTGGTGAAATTGTTACCAT 58.963 33.333 8.89 0.00 43.45 3.55
130 131 8.253113 AGAATCATTGGTGAAATTGTTACCATC 58.747 33.333 8.89 4.77 43.45 3.51
131 132 7.722949 ATCATTGGTGAAATTGTTACCATCT 57.277 32.000 8.89 0.05 43.45 2.90
132 133 6.923012 TCATTGGTGAAATTGTTACCATCTG 58.077 36.000 8.89 9.57 43.45 2.90
133 134 6.493115 TCATTGGTGAAATTGTTACCATCTGT 59.507 34.615 8.89 0.00 43.45 3.41
134 135 7.667635 TCATTGGTGAAATTGTTACCATCTGTA 59.332 33.333 8.89 0.00 43.45 2.74
135 136 7.447374 TTGGTGAAATTGTTACCATCTGTAG 57.553 36.000 8.89 0.00 43.45 2.74
136 137 5.943416 TGGTGAAATTGTTACCATCTGTAGG 59.057 40.000 4.99 0.00 39.43 3.18
137 138 5.944007 GGTGAAATTGTTACCATCTGTAGGT 59.056 40.000 0.00 0.00 43.14 3.08
138 139 6.128007 GGTGAAATTGTTACCATCTGTAGGTG 60.128 42.308 0.00 0.00 40.26 4.00
139 140 6.430000 GTGAAATTGTTACCATCTGTAGGTGT 59.570 38.462 0.00 0.00 40.26 4.16
140 141 7.001674 TGAAATTGTTACCATCTGTAGGTGTT 58.998 34.615 0.00 0.00 40.26 3.32
141 142 6.817765 AATTGTTACCATCTGTAGGTGTTG 57.182 37.500 0.00 0.00 40.26 3.33
142 143 4.967084 TGTTACCATCTGTAGGTGTTGT 57.033 40.909 0.00 0.00 40.26 3.32
143 144 5.298989 TGTTACCATCTGTAGGTGTTGTT 57.701 39.130 0.00 0.00 40.26 2.83
144 145 6.422344 TGTTACCATCTGTAGGTGTTGTTA 57.578 37.500 0.00 0.00 40.26 2.41
145 146 7.011499 TGTTACCATCTGTAGGTGTTGTTAT 57.989 36.000 0.00 0.00 40.26 1.89
146 147 6.876789 TGTTACCATCTGTAGGTGTTGTTATG 59.123 38.462 0.00 0.00 40.26 1.90
147 148 5.499004 ACCATCTGTAGGTGTTGTTATGT 57.501 39.130 0.00 0.00 38.13 2.29
148 149 5.245531 ACCATCTGTAGGTGTTGTTATGTG 58.754 41.667 0.00 0.00 38.13 3.21
149 150 4.635765 CCATCTGTAGGTGTTGTTATGTGG 59.364 45.833 0.00 0.00 0.00 4.17
150 151 3.670625 TCTGTAGGTGTTGTTATGTGGC 58.329 45.455 0.00 0.00 0.00 5.01
151 152 3.071747 TCTGTAGGTGTTGTTATGTGGCA 59.928 43.478 0.00 0.00 0.00 4.92
152 153 3.142951 TGTAGGTGTTGTTATGTGGCAC 58.857 45.455 11.55 11.55 0.00 5.01
154 155 0.239879 GGTGTTGTTATGTGGCACCG 59.760 55.000 16.26 0.00 39.90 4.94
155 156 0.948678 GTGTTGTTATGTGGCACCGT 59.051 50.000 16.26 6.51 0.00 4.83
156 157 1.335496 GTGTTGTTATGTGGCACCGTT 59.665 47.619 16.26 2.51 0.00 4.44
157 158 1.335182 TGTTGTTATGTGGCACCGTTG 59.665 47.619 16.26 0.00 0.00 4.10
158 159 1.604755 GTTGTTATGTGGCACCGTTGA 59.395 47.619 16.26 0.00 0.00 3.18
159 160 1.518325 TGTTATGTGGCACCGTTGAG 58.482 50.000 16.26 0.00 0.00 3.02
160 161 1.070914 TGTTATGTGGCACCGTTGAGA 59.929 47.619 16.26 0.00 0.00 3.27
161 162 1.463444 GTTATGTGGCACCGTTGAGAC 59.537 52.381 16.26 0.73 0.00 3.36
172 173 2.798834 CGTTGAGACGTGTTGTTGTT 57.201 45.000 0.00 0.00 44.08 2.83
173 174 2.689635 CGTTGAGACGTGTTGTTGTTC 58.310 47.619 0.00 0.00 44.08 3.18
174 175 2.092995 CGTTGAGACGTGTTGTTGTTCA 59.907 45.455 0.00 0.00 44.08 3.18
175 176 3.242284 CGTTGAGACGTGTTGTTGTTCAT 60.242 43.478 0.00 0.00 44.08 2.57
176 177 3.942539 TGAGACGTGTTGTTGTTCATG 57.057 42.857 0.00 0.00 0.00 3.07
177 178 2.611751 TGAGACGTGTTGTTGTTCATGG 59.388 45.455 0.00 0.00 0.00 3.66
178 179 2.612212 GAGACGTGTTGTTGTTCATGGT 59.388 45.455 0.00 0.00 0.00 3.55
179 180 2.612212 AGACGTGTTGTTGTTCATGGTC 59.388 45.455 0.00 0.00 0.00 4.02
180 181 2.353269 GACGTGTTGTTGTTCATGGTCA 59.647 45.455 0.00 0.00 0.00 4.02
181 182 2.948979 ACGTGTTGTTGTTCATGGTCAT 59.051 40.909 0.00 0.00 0.00 3.06
182 183 3.003275 ACGTGTTGTTGTTCATGGTCATC 59.997 43.478 0.00 0.00 0.00 2.92
183 184 3.250762 CGTGTTGTTGTTCATGGTCATCT 59.749 43.478 0.00 0.00 0.00 2.90
184 185 4.450757 CGTGTTGTTGTTCATGGTCATCTA 59.549 41.667 0.00 0.00 0.00 1.98
185 186 5.122239 CGTGTTGTTGTTCATGGTCATCTAT 59.878 40.000 0.00 0.00 0.00 1.98
186 187 6.348458 CGTGTTGTTGTTCATGGTCATCTATT 60.348 38.462 0.00 0.00 0.00 1.73
187 188 7.370383 GTGTTGTTGTTCATGGTCATCTATTT 58.630 34.615 0.00 0.00 0.00 1.40
188 189 7.867403 GTGTTGTTGTTCATGGTCATCTATTTT 59.133 33.333 0.00 0.00 0.00 1.82
189 190 7.866898 TGTTGTTGTTCATGGTCATCTATTTTG 59.133 33.333 0.00 0.00 0.00 2.44
190 191 7.757941 TGTTGTTCATGGTCATCTATTTTGA 57.242 32.000 0.00 0.00 0.00 2.69
191 192 7.819644 TGTTGTTCATGGTCATCTATTTTGAG 58.180 34.615 0.00 0.00 0.00 3.02
192 193 7.665145 TGTTGTTCATGGTCATCTATTTTGAGA 59.335 33.333 0.00 0.00 0.00 3.27
193 194 8.680903 GTTGTTCATGGTCATCTATTTTGAGAT 58.319 33.333 0.00 0.00 36.58 2.75
201 202 5.707242 CATCTATTTTGAGATGCTGGCAT 57.293 39.130 7.86 7.86 44.70 4.40
202 203 5.461526 CATCTATTTTGAGATGCTGGCATG 58.538 41.667 13.04 0.00 44.70 4.06
203 204 3.887110 TCTATTTTGAGATGCTGGCATGG 59.113 43.478 13.04 0.00 36.70 3.66
204 205 1.927487 TTTTGAGATGCTGGCATGGT 58.073 45.000 13.04 0.00 36.70 3.55
205 206 1.179152 TTTGAGATGCTGGCATGGTG 58.821 50.000 13.04 0.00 36.70 4.17
206 207 0.681887 TTGAGATGCTGGCATGGTGG 60.682 55.000 13.04 0.00 36.70 4.61
207 208 1.077212 GAGATGCTGGCATGGTGGT 60.077 57.895 13.04 0.00 36.70 4.16
208 209 0.181114 GAGATGCTGGCATGGTGGTA 59.819 55.000 13.04 0.00 36.70 3.25
209 210 0.625316 AGATGCTGGCATGGTGGTAA 59.375 50.000 13.04 0.00 36.70 2.85
210 211 1.005805 AGATGCTGGCATGGTGGTAAA 59.994 47.619 13.04 0.00 36.70 2.01
211 212 2.034124 GATGCTGGCATGGTGGTAAAT 58.966 47.619 13.04 0.00 36.70 1.40
212 213 2.816777 TGCTGGCATGGTGGTAAATA 57.183 45.000 0.00 0.00 0.00 1.40
213 214 2.374184 TGCTGGCATGGTGGTAAATAC 58.626 47.619 0.00 0.00 0.00 1.89
214 215 1.681264 GCTGGCATGGTGGTAAATACC 59.319 52.381 2.53 2.53 46.62 2.73
230 231 7.982224 GGTAAATACCAGACTTTTGATGTACC 58.018 38.462 4.72 0.00 45.73 3.34
231 232 7.608761 GGTAAATACCAGACTTTTGATGTACCA 59.391 37.037 4.72 0.00 45.73 3.25
232 233 7.687941 AAATACCAGACTTTTGATGTACCAG 57.312 36.000 0.00 0.00 0.00 4.00
233 234 4.706842 ACCAGACTTTTGATGTACCAGT 57.293 40.909 0.00 0.00 0.00 4.00
234 235 4.389374 ACCAGACTTTTGATGTACCAGTG 58.611 43.478 0.00 0.00 0.00 3.66
235 236 3.189287 CCAGACTTTTGATGTACCAGTGC 59.811 47.826 0.00 0.00 0.00 4.40
236 237 3.814842 CAGACTTTTGATGTACCAGTGCA 59.185 43.478 0.00 0.00 0.00 4.57
237 238 3.815401 AGACTTTTGATGTACCAGTGCAC 59.185 43.478 9.40 9.40 0.00 4.57
238 239 2.548057 ACTTTTGATGTACCAGTGCACG 59.452 45.455 12.01 6.45 0.00 5.34
239 240 2.535012 TTTGATGTACCAGTGCACGA 57.465 45.000 12.01 0.00 0.00 4.35
240 241 1.790755 TTGATGTACCAGTGCACGAC 58.209 50.000 12.01 9.06 0.00 4.34
241 242 0.676736 TGATGTACCAGTGCACGACA 59.323 50.000 12.01 14.37 0.00 4.35
242 243 1.275010 TGATGTACCAGTGCACGACAT 59.725 47.619 21.68 21.68 33.52 3.06
243 244 2.289382 TGATGTACCAGTGCACGACATT 60.289 45.455 22.12 11.86 31.03 2.71
244 245 1.507562 TGTACCAGTGCACGACATTG 58.492 50.000 12.01 3.42 35.83 2.82
245 246 0.165944 GTACCAGTGCACGACATTGC 59.834 55.000 12.01 0.00 43.31 3.56
252 253 3.495124 GCACGACATTGCATTGGTT 57.505 47.368 12.87 0.00 42.49 3.67
253 254 1.782044 GCACGACATTGCATTGGTTT 58.218 45.000 12.87 0.00 42.49 3.27
254 255 1.456544 GCACGACATTGCATTGGTTTG 59.543 47.619 12.87 7.22 42.49 2.93
255 256 1.456544 CACGACATTGCATTGGTTTGC 59.543 47.619 12.87 0.00 43.07 3.68
256 257 1.070038 CGACATTGCATTGGTTTGCC 58.930 50.000 12.87 0.00 42.06 4.52
257 258 1.337074 CGACATTGCATTGGTTTGCCT 60.337 47.619 12.87 0.00 42.06 4.75
258 259 2.769893 GACATTGCATTGGTTTGCCTT 58.230 42.857 12.87 0.00 42.06 4.35
259 260 2.481185 GACATTGCATTGGTTTGCCTTG 59.519 45.455 12.87 0.00 42.06 3.61
260 261 1.807742 CATTGCATTGGTTTGCCTTGG 59.192 47.619 0.47 0.00 42.06 3.61
261 262 0.534652 TTGCATTGGTTTGCCTTGGC 60.535 50.000 4.43 4.43 42.06 4.52
262 263 1.071128 GCATTGGTTTGCCTTGGCA 59.929 52.632 10.65 10.65 36.60 4.92
263 264 0.321830 GCATTGGTTTGCCTTGGCAT 60.322 50.000 15.58 0.00 36.60 4.40
264 265 1.066286 GCATTGGTTTGCCTTGGCATA 60.066 47.619 15.58 7.95 36.60 3.14
265 266 2.620242 CATTGGTTTGCCTTGGCATAC 58.380 47.619 21.42 21.42 35.27 2.39
266 267 2.008242 TTGGTTTGCCTTGGCATACT 57.992 45.000 25.89 0.00 35.27 2.12
267 268 1.255882 TGGTTTGCCTTGGCATACTG 58.744 50.000 25.89 0.00 35.27 2.74
268 269 0.108662 GGTTTGCCTTGGCATACTGC 60.109 55.000 25.89 12.86 44.08 4.40
282 283 5.012328 GCATACTGCCAGTAAACTCTAGT 57.988 43.478 8.93 0.00 37.42 2.57
283 284 5.420409 GCATACTGCCAGTAAACTCTAGTT 58.580 41.667 8.93 0.00 37.42 2.24
284 285 5.292101 GCATACTGCCAGTAAACTCTAGTTG 59.708 44.000 8.93 0.51 37.42 3.16
285 286 4.273148 ACTGCCAGTAAACTCTAGTTGG 57.727 45.455 0.00 0.00 38.44 3.77
286 287 3.003480 CTGCCAGTAAACTCTAGTTGGC 58.997 50.000 14.07 14.07 44.38 4.52
287 288 3.053831 GCCAGTAAACTCTAGTTGGCA 57.946 47.619 15.46 0.00 43.86 4.92
288 289 3.009033 TGCCAGTAAACTCTAGTTGGCAT 59.991 43.478 18.02 0.00 46.95 4.40
289 290 3.623510 GCCAGTAAACTCTAGTTGGCATC 59.376 47.826 15.46 0.00 43.86 3.91
290 291 4.624125 GCCAGTAAACTCTAGTTGGCATCT 60.624 45.833 15.46 3.23 43.86 2.90
291 292 5.491982 CCAGTAAACTCTAGTTGGCATCTT 58.508 41.667 2.98 0.00 38.44 2.40
292 293 5.352569 CCAGTAAACTCTAGTTGGCATCTTG 59.647 44.000 2.98 2.02 38.44 3.02
293 294 5.352569 CAGTAAACTCTAGTTGGCATCTTGG 59.647 44.000 2.98 0.00 38.44 3.61
294 295 3.356529 AACTCTAGTTGGCATCTTGGG 57.643 47.619 2.98 4.40 36.80 4.12
295 296 1.561542 ACTCTAGTTGGCATCTTGGGG 59.438 52.381 10.82 4.74 0.00 4.96
296 297 0.918983 TCTAGTTGGCATCTTGGGGG 59.081 55.000 2.98 0.00 0.00 5.40
314 315 1.071699 GGGGGTCTTTTTCTTTTGGGC 59.928 52.381 0.00 0.00 0.00 5.36
315 316 2.047061 GGGGTCTTTTTCTTTTGGGCT 58.953 47.619 0.00 0.00 0.00 5.19
316 317 2.224281 GGGGTCTTTTTCTTTTGGGCTG 60.224 50.000 0.00 0.00 0.00 4.85
317 318 2.483876 GGTCTTTTTCTTTTGGGCTGC 58.516 47.619 0.00 0.00 0.00 5.25
318 319 2.103094 GGTCTTTTTCTTTTGGGCTGCT 59.897 45.455 0.00 0.00 0.00 4.24
319 320 3.384668 GTCTTTTTCTTTTGGGCTGCTC 58.615 45.455 0.00 0.00 0.00 4.26
320 321 3.030291 TCTTTTTCTTTTGGGCTGCTCA 58.970 40.909 0.00 0.00 0.00 4.26
321 322 3.642848 TCTTTTTCTTTTGGGCTGCTCAT 59.357 39.130 1.56 0.00 0.00 2.90
322 323 3.389925 TTTTCTTTTGGGCTGCTCATG 57.610 42.857 1.56 0.00 0.00 3.07
323 324 2.291209 TTCTTTTGGGCTGCTCATGA 57.709 45.000 1.56 0.00 0.00 3.07
324 325 2.291209 TCTTTTGGGCTGCTCATGAA 57.709 45.000 1.56 0.55 0.00 2.57
325 326 2.596346 TCTTTTGGGCTGCTCATGAAA 58.404 42.857 1.56 0.59 0.00 2.69
326 327 2.297033 TCTTTTGGGCTGCTCATGAAAC 59.703 45.455 1.56 0.00 0.00 2.78
327 328 1.702182 TTTGGGCTGCTCATGAAACA 58.298 45.000 1.56 0.00 0.00 2.83
328 329 1.927487 TTGGGCTGCTCATGAAACAT 58.073 45.000 1.56 0.00 0.00 2.71
329 330 1.179152 TGGGCTGCTCATGAAACATG 58.821 50.000 0.00 5.51 0.00 3.21
330 331 0.458669 GGGCTGCTCATGAAACATGG 59.541 55.000 11.04 4.50 0.00 3.66
331 332 1.466856 GGCTGCTCATGAAACATGGA 58.533 50.000 11.04 0.00 0.00 3.41
332 333 1.820519 GGCTGCTCATGAAACATGGAA 59.179 47.619 11.04 0.00 0.00 3.53
333 334 2.231964 GGCTGCTCATGAAACATGGAAA 59.768 45.455 11.04 0.00 0.00 3.13
334 335 3.118884 GGCTGCTCATGAAACATGGAAAT 60.119 43.478 11.04 0.00 0.00 2.17
335 336 4.501071 GCTGCTCATGAAACATGGAAATT 58.499 39.130 11.04 0.00 0.00 1.82
336 337 4.565564 GCTGCTCATGAAACATGGAAATTC 59.434 41.667 11.04 0.00 0.00 2.17
337 338 4.735985 TGCTCATGAAACATGGAAATTCG 58.264 39.130 11.04 0.00 0.00 3.34
338 339 4.107622 GCTCATGAAACATGGAAATTCGG 58.892 43.478 11.04 0.00 0.00 4.30
339 340 4.107622 CTCATGAAACATGGAAATTCGGC 58.892 43.478 11.04 0.00 0.00 5.54
340 341 3.763360 TCATGAAACATGGAAATTCGGCT 59.237 39.130 11.04 0.00 0.00 5.52
341 342 3.574284 TGAAACATGGAAATTCGGCTG 57.426 42.857 0.00 0.00 0.00 4.85
342 343 2.890311 TGAAACATGGAAATTCGGCTGT 59.110 40.909 0.00 0.00 0.00 4.40
343 344 3.320541 TGAAACATGGAAATTCGGCTGTT 59.679 39.130 0.00 2.14 0.00 3.16
344 345 4.202202 TGAAACATGGAAATTCGGCTGTTT 60.202 37.500 14.55 14.55 38.96 2.83
345 346 5.010112 TGAAACATGGAAATTCGGCTGTTTA 59.990 36.000 14.60 5.93 37.05 2.01
346 347 5.461032 AACATGGAAATTCGGCTGTTTAA 57.539 34.783 0.00 0.00 0.00 1.52
347 348 5.059404 ACATGGAAATTCGGCTGTTTAAG 57.941 39.130 0.00 0.00 0.00 1.85
364 365 3.503363 GCAGGGCGCTAGCTGTTG 61.503 66.667 13.93 7.05 44.37 3.33
365 366 2.265739 CAGGGCGCTAGCTGTTGA 59.734 61.111 13.93 0.00 44.37 3.18
366 367 1.153289 CAGGGCGCTAGCTGTTGAT 60.153 57.895 13.93 0.00 44.37 2.57
367 368 1.153289 AGGGCGCTAGCTGTTGATG 60.153 57.895 13.93 0.00 44.37 3.07
368 369 2.711924 GGCGCTAGCTGTTGATGC 59.288 61.111 13.93 6.56 44.37 3.91
369 370 1.817099 GGCGCTAGCTGTTGATGCT 60.817 57.895 13.93 0.00 44.37 3.79
370 371 1.372087 GGCGCTAGCTGTTGATGCTT 61.372 55.000 13.93 0.00 44.37 3.91
371 372 1.290203 GCGCTAGCTGTTGATGCTTA 58.710 50.000 13.93 0.00 41.46 3.09
372 373 1.869767 GCGCTAGCTGTTGATGCTTAT 59.130 47.619 13.93 0.00 41.46 1.73
373 374 2.289002 GCGCTAGCTGTTGATGCTTATT 59.711 45.455 13.93 0.00 41.46 1.40
374 375 3.847467 GCGCTAGCTGTTGATGCTTATTG 60.847 47.826 13.93 0.00 41.46 1.90
375 376 3.303593 CGCTAGCTGTTGATGCTTATTGG 60.304 47.826 13.93 0.00 41.46 3.16
376 377 3.004106 GCTAGCTGTTGATGCTTATTGGG 59.996 47.826 7.70 0.00 41.46 4.12
377 378 2.381911 AGCTGTTGATGCTTATTGGGG 58.618 47.619 0.00 0.00 37.52 4.96
378 379 1.410153 GCTGTTGATGCTTATTGGGGG 59.590 52.381 0.00 0.00 0.00 5.40
379 380 2.949963 GCTGTTGATGCTTATTGGGGGA 60.950 50.000 0.00 0.00 0.00 4.81
380 381 3.364549 CTGTTGATGCTTATTGGGGGAA 58.635 45.455 0.00 0.00 0.00 3.97
381 382 3.768757 CTGTTGATGCTTATTGGGGGAAA 59.231 43.478 0.00 0.00 0.00 3.13
382 383 3.768757 TGTTGATGCTTATTGGGGGAAAG 59.231 43.478 0.00 0.00 0.00 2.62
383 384 4.023291 GTTGATGCTTATTGGGGGAAAGA 58.977 43.478 0.00 0.00 0.00 2.52
384 385 3.631250 TGATGCTTATTGGGGGAAAGAC 58.369 45.455 0.00 0.00 0.00 3.01
385 386 3.011144 TGATGCTTATTGGGGGAAAGACA 59.989 43.478 0.00 0.00 0.00 3.41
386 387 3.085952 TGCTTATTGGGGGAAAGACAG 57.914 47.619 0.00 0.00 0.00 3.51
387 388 1.751351 GCTTATTGGGGGAAAGACAGC 59.249 52.381 0.00 0.00 0.00 4.40
388 389 2.379005 CTTATTGGGGGAAAGACAGCC 58.621 52.381 0.00 0.00 0.00 4.85
389 390 0.254747 TATTGGGGGAAAGACAGCCG 59.745 55.000 0.00 0.00 0.00 5.52
390 391 3.739589 TATTGGGGGAAAGACAGCCGC 62.740 57.143 0.00 0.00 36.47 6.53
392 393 4.035102 GGGGAAAGACAGCCGCCT 62.035 66.667 0.00 0.00 0.00 5.52
393 394 2.747855 GGGAAAGACAGCCGCCTG 60.748 66.667 0.00 0.00 44.80 4.85
394 395 2.747855 GGAAAGACAGCCGCCTGG 60.748 66.667 0.00 0.00 43.53 4.45
395 396 2.347490 GAAAGACAGCCGCCTGGA 59.653 61.111 0.00 0.00 43.53 3.86
396 397 1.078143 GAAAGACAGCCGCCTGGAT 60.078 57.895 0.00 0.00 43.53 3.41
397 398 0.178068 GAAAGACAGCCGCCTGGATA 59.822 55.000 0.00 0.00 43.53 2.59
398 399 0.839946 AAAGACAGCCGCCTGGATAT 59.160 50.000 0.00 0.00 43.53 1.63
399 400 0.107456 AAGACAGCCGCCTGGATATG 59.893 55.000 0.00 0.00 43.53 1.78
400 401 1.302033 GACAGCCGCCTGGATATGG 60.302 63.158 0.00 0.00 43.53 2.74
401 402 1.758440 GACAGCCGCCTGGATATGGA 61.758 60.000 0.00 0.00 43.53 3.41
402 403 1.130054 ACAGCCGCCTGGATATGGAT 61.130 55.000 0.00 0.00 43.53 3.41
403 404 0.904649 CAGCCGCCTGGATATGGATA 59.095 55.000 0.00 0.00 37.49 2.59
404 405 1.487976 CAGCCGCCTGGATATGGATAT 59.512 52.381 0.00 0.00 37.49 1.63
405 406 2.092753 CAGCCGCCTGGATATGGATATT 60.093 50.000 0.00 0.00 37.49 1.28
406 407 2.092753 AGCCGCCTGGATATGGATATTG 60.093 50.000 0.00 0.00 37.49 1.90
407 408 2.923121 CCGCCTGGATATGGATATTGG 58.077 52.381 0.00 0.00 37.49 3.16
408 409 2.239654 CCGCCTGGATATGGATATTGGT 59.760 50.000 0.00 0.00 37.49 3.67
409 410 3.273434 CGCCTGGATATGGATATTGGTG 58.727 50.000 0.00 0.00 0.00 4.17
410 411 3.019564 GCCTGGATATGGATATTGGTGC 58.980 50.000 0.00 0.00 0.00 5.01
411 412 3.308688 GCCTGGATATGGATATTGGTGCT 60.309 47.826 0.00 0.00 0.00 4.40
412 413 4.812096 GCCTGGATATGGATATTGGTGCTT 60.812 45.833 0.00 0.00 0.00 3.91
413 414 4.946157 CCTGGATATGGATATTGGTGCTTC 59.054 45.833 0.00 0.00 0.00 3.86
414 415 5.280882 CCTGGATATGGATATTGGTGCTTCT 60.281 44.000 0.00 0.00 0.00 2.85
415 416 6.204852 TGGATATGGATATTGGTGCTTCTT 57.795 37.500 0.00 0.00 0.00 2.52
416 417 6.005823 TGGATATGGATATTGGTGCTTCTTG 58.994 40.000 0.00 0.00 0.00 3.02
417 418 5.105997 GGATATGGATATTGGTGCTTCTTGC 60.106 44.000 0.00 0.00 43.25 4.01
427 428 1.427020 GCTTCTTGCAGTCATCGCC 59.573 57.895 0.00 0.00 42.31 5.54
428 429 1.712081 CTTCTTGCAGTCATCGCCG 59.288 57.895 0.00 0.00 0.00 6.46
429 430 1.699656 CTTCTTGCAGTCATCGCCGG 61.700 60.000 0.00 0.00 0.00 6.13
430 431 3.197790 CTTGCAGTCATCGCCGGG 61.198 66.667 2.18 0.00 0.00 5.73
431 432 3.958147 CTTGCAGTCATCGCCGGGT 62.958 63.158 2.18 0.00 0.00 5.28
432 433 4.758251 TGCAGTCATCGCCGGGTG 62.758 66.667 2.18 0.00 0.00 4.61
472 473 2.882777 CCACGCGCTAGACTGCAG 60.883 66.667 13.48 13.48 0.00 4.41
473 474 3.549150 CACGCGCTAGACTGCAGC 61.549 66.667 15.27 6.85 35.61 5.25
474 475 4.803426 ACGCGCTAGACTGCAGCC 62.803 66.667 15.27 1.42 35.53 4.85
475 476 4.504916 CGCGCTAGACTGCAGCCT 62.505 66.667 15.27 11.46 35.53 4.58
476 477 2.889503 GCGCTAGACTGCAGCCTG 60.890 66.667 15.27 4.37 35.53 4.85
581 582 0.925466 CGTTTGAGTCGAACCGTTGT 59.075 50.000 16.17 0.00 0.00 3.32
699 700 1.141881 CGCTTGATAGGTGCGGTCT 59.858 57.895 0.00 0.00 45.07 3.85
709 710 3.303135 TGCGGTCTGGCTCGAACT 61.303 61.111 0.00 0.00 0.00 3.01
900 903 1.121407 CCTCATCCATGGACGGGCTA 61.121 60.000 18.99 0.00 0.00 3.93
1012 1017 4.048504 GGCATTTTGTTTGTACGAGCTTT 58.951 39.130 0.00 0.00 0.00 3.51
1016 1021 0.584396 TGTTTGTACGAGCTTTGGCG 59.416 50.000 0.00 0.00 44.37 5.69
1129 1134 3.612479 GCTTGTCGCATTTGAAGGAACAT 60.612 43.478 0.00 0.00 38.92 2.71
1870 1916 7.620880 ACATCTCAATTACCAGTGTAGCTTAA 58.379 34.615 0.00 0.00 0.00 1.85
2298 4846 4.070009 GGCTGATATGAATGCACAGATGA 58.930 43.478 2.66 0.00 0.00 2.92
2757 5305 9.025041 TGTGAACTTCTCTAAGATGAACTATGA 57.975 33.333 0.00 0.00 36.50 2.15
2995 9668 8.662781 TGATTATGTTAGCATTGGAAGACTAC 57.337 34.615 0.00 0.00 36.58 2.73
3068 9742 2.916934 TGGAAGCCTATGTTTAGGTGGT 59.083 45.455 1.31 0.00 45.99 4.16
3085 9759 2.598394 TTCCGTCGACCCCGAGTT 60.598 61.111 10.58 0.00 46.52 3.01
3089 9812 2.334946 CGTCGACCCCGAGTTACCA 61.335 63.158 10.58 0.00 46.52 3.25
3274 14249 9.515226 TTAGGAAAAACTTTACTCACTGCATAT 57.485 29.630 0.00 0.00 0.00 1.78
3539 14514 0.179062 CATCTCTACCAGTGGCAGCC 60.179 60.000 9.78 3.66 0.00 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.258676 AGTCCTGGAGGAGTCGAAAC 58.741 55.000 0.00 0.00 44.28 2.78
1 2 2.011122 AAGTCCTGGAGGAGTCGAAA 57.989 50.000 3.40 0.00 46.74 3.46
2 3 2.041350 AGTAAGTCCTGGAGGAGTCGAA 59.959 50.000 3.40 0.00 46.74 3.71
4 5 1.746220 CAGTAAGTCCTGGAGGAGTCG 59.254 57.143 3.40 0.00 46.74 4.18
5 6 3.088789 TCAGTAAGTCCTGGAGGAGTC 57.911 52.381 3.40 0.00 46.74 3.36
7 8 3.636300 CTCATCAGTAAGTCCTGGAGGAG 59.364 52.174 0.00 0.00 46.49 3.69
8 9 3.011821 ACTCATCAGTAAGTCCTGGAGGA 59.988 47.826 0.00 0.00 43.08 3.71
9 10 3.131933 CACTCATCAGTAAGTCCTGGAGG 59.868 52.174 0.00 0.00 33.14 4.30
10 11 4.019858 TCACTCATCAGTAAGTCCTGGAG 58.980 47.826 0.00 0.00 33.14 3.86
11 12 4.047627 TCACTCATCAGTAAGTCCTGGA 57.952 45.455 0.00 0.00 33.14 3.86
12 13 4.442612 CCATCACTCATCAGTAAGTCCTGG 60.443 50.000 0.00 0.00 33.14 4.45
13 14 4.691175 CCATCACTCATCAGTAAGTCCTG 58.309 47.826 0.00 0.00 0.00 3.86
14 15 3.133721 GCCATCACTCATCAGTAAGTCCT 59.866 47.826 0.00 0.00 0.00 3.85
15 16 3.133721 AGCCATCACTCATCAGTAAGTCC 59.866 47.826 0.00 0.00 0.00 3.85
16 17 4.099266 AGAGCCATCACTCATCAGTAAGTC 59.901 45.833 0.00 0.00 39.26 3.01
17 18 4.029520 AGAGCCATCACTCATCAGTAAGT 58.970 43.478 0.00 0.00 39.26 2.24
18 19 4.669206 AGAGCCATCACTCATCAGTAAG 57.331 45.455 0.00 0.00 39.26 2.34
19 20 6.324770 TCAATAGAGCCATCACTCATCAGTAA 59.675 38.462 0.00 0.00 39.26 2.24
20 21 5.835280 TCAATAGAGCCATCACTCATCAGTA 59.165 40.000 0.00 0.00 39.26 2.74
21 22 4.652881 TCAATAGAGCCATCACTCATCAGT 59.347 41.667 0.00 0.00 39.26 3.41
22 23 5.211174 TCAATAGAGCCATCACTCATCAG 57.789 43.478 0.00 0.00 39.26 2.90
23 24 5.820404 ATCAATAGAGCCATCACTCATCA 57.180 39.130 0.00 0.00 39.26 3.07
24 25 5.642919 GGAATCAATAGAGCCATCACTCATC 59.357 44.000 0.00 0.00 39.26 2.92
25 26 5.310068 AGGAATCAATAGAGCCATCACTCAT 59.690 40.000 0.00 0.00 39.26 2.90
26 27 4.657504 AGGAATCAATAGAGCCATCACTCA 59.342 41.667 0.00 0.00 39.26 3.41
27 28 5.226194 AGGAATCAATAGAGCCATCACTC 57.774 43.478 0.00 0.00 36.91 3.51
28 29 4.041444 GGAGGAATCAATAGAGCCATCACT 59.959 45.833 0.00 0.00 0.00 3.41
29 30 4.202398 TGGAGGAATCAATAGAGCCATCAC 60.202 45.833 0.00 0.00 0.00 3.06
30 31 3.975982 TGGAGGAATCAATAGAGCCATCA 59.024 43.478 0.00 0.00 0.00 3.07
31 32 4.565236 CCTGGAGGAATCAATAGAGCCATC 60.565 50.000 0.00 0.00 37.39 3.51
32 33 3.330110 CCTGGAGGAATCAATAGAGCCAT 59.670 47.826 0.00 0.00 37.39 4.40
33 34 2.707791 CCTGGAGGAATCAATAGAGCCA 59.292 50.000 0.00 0.00 37.39 4.75
34 35 2.975489 TCCTGGAGGAATCAATAGAGCC 59.025 50.000 0.00 0.00 42.18 4.70
46 47 1.203237 AGAAGAAGCTGTCCTGGAGGA 60.203 52.381 0.00 0.00 43.08 3.71
47 48 1.066286 CAGAAGAAGCTGTCCTGGAGG 60.066 57.143 0.00 0.00 0.00 4.30
48 49 1.675415 GCAGAAGAAGCTGTCCTGGAG 60.675 57.143 0.00 0.00 38.17 3.86
49 50 0.322975 GCAGAAGAAGCTGTCCTGGA 59.677 55.000 0.00 0.00 38.17 3.86
50 51 0.324285 AGCAGAAGAAGCTGTCCTGG 59.676 55.000 0.00 0.00 41.61 4.45
51 52 2.233431 ACTAGCAGAAGAAGCTGTCCTG 59.767 50.000 0.00 0.00 43.33 3.86
52 53 2.534990 ACTAGCAGAAGAAGCTGTCCT 58.465 47.619 0.00 0.00 43.33 3.85
53 54 3.326836 AACTAGCAGAAGAAGCTGTCC 57.673 47.619 0.00 0.00 43.33 4.02
54 55 5.872070 ACATAAACTAGCAGAAGAAGCTGTC 59.128 40.000 0.00 0.00 43.33 3.51
55 56 5.641209 CACATAAACTAGCAGAAGAAGCTGT 59.359 40.000 0.00 0.00 43.33 4.40
56 57 5.871524 TCACATAAACTAGCAGAAGAAGCTG 59.128 40.000 0.00 0.00 43.33 4.24
57 58 6.042638 TCACATAAACTAGCAGAAGAAGCT 57.957 37.500 0.00 0.00 45.77 3.74
58 59 6.727824 TTCACATAAACTAGCAGAAGAAGC 57.272 37.500 0.00 0.00 0.00 3.86
59 60 8.715191 AGATTCACATAAACTAGCAGAAGAAG 57.285 34.615 0.00 0.00 0.00 2.85
75 76 8.408601 GGCAACATGTAATCTTTAGATTCACAT 58.591 33.333 8.19 12.39 43.17 3.21
76 77 7.392953 TGGCAACATGTAATCTTTAGATTCACA 59.607 33.333 8.19 11.01 46.17 3.58
77 78 7.761409 TGGCAACATGTAATCTTTAGATTCAC 58.239 34.615 8.19 6.67 46.17 3.18
78 79 7.936496 TGGCAACATGTAATCTTTAGATTCA 57.064 32.000 8.19 7.42 46.17 2.57
93 94 8.674641 TTCACCAATGATTCTGTGGCAACATG 62.675 42.308 0.00 0.00 41.95 3.21
94 95 6.737225 TTCACCAATGATTCTGTGGCAACAT 61.737 40.000 0.00 0.00 41.95 2.71
95 96 5.473266 TTCACCAATGATTCTGTGGCAACA 61.473 41.667 0.00 0.00 38.67 3.33
96 97 2.557924 TCACCAATGATTCTGTGGCAAC 59.442 45.455 0.00 0.00 35.72 4.17
97 98 2.874014 TCACCAATGATTCTGTGGCAA 58.126 42.857 0.00 0.00 35.72 4.52
98 99 2.583024 TCACCAATGATTCTGTGGCA 57.417 45.000 6.21 0.00 35.72 4.92
99 100 3.940209 TTTCACCAATGATTCTGTGGC 57.060 42.857 6.21 0.00 35.72 5.01
100 101 5.786311 ACAATTTCACCAATGATTCTGTGG 58.214 37.500 4.98 5.06 38.46 4.17
101 102 7.329226 GGTAACAATTTCACCAATGATTCTGTG 59.671 37.037 0.00 0.00 33.85 3.66
102 103 7.378181 GGTAACAATTTCACCAATGATTCTGT 58.622 34.615 0.00 0.00 33.85 3.41
103 104 7.816945 GGTAACAATTTCACCAATGATTCTG 57.183 36.000 0.00 0.00 33.85 3.02
122 123 6.877322 ACATAACAACACCTACAGATGGTAAC 59.123 38.462 0.00 0.00 35.80 2.50
123 124 6.876789 CACATAACAACACCTACAGATGGTAA 59.123 38.462 0.00 0.00 35.80 2.85
124 125 6.403049 CACATAACAACACCTACAGATGGTA 58.597 40.000 0.00 0.00 35.80 3.25
125 126 5.245531 CACATAACAACACCTACAGATGGT 58.754 41.667 0.00 0.00 38.53 3.55
126 127 4.635765 CCACATAACAACACCTACAGATGG 59.364 45.833 0.00 0.00 0.00 3.51
127 128 4.094887 GCCACATAACAACACCTACAGATG 59.905 45.833 0.00 0.00 0.00 2.90
128 129 4.261801 GCCACATAACAACACCTACAGAT 58.738 43.478 0.00 0.00 0.00 2.90
129 130 3.071747 TGCCACATAACAACACCTACAGA 59.928 43.478 0.00 0.00 0.00 3.41
130 131 3.188460 GTGCCACATAACAACACCTACAG 59.812 47.826 0.00 0.00 0.00 2.74
131 132 3.142951 GTGCCACATAACAACACCTACA 58.857 45.455 0.00 0.00 0.00 2.74
132 133 2.486592 GGTGCCACATAACAACACCTAC 59.513 50.000 0.00 0.00 45.86 3.18
133 134 2.785562 GGTGCCACATAACAACACCTA 58.214 47.619 0.00 0.00 45.86 3.08
134 135 1.616159 GGTGCCACATAACAACACCT 58.384 50.000 0.00 0.00 45.86 4.00
135 136 0.239879 CGGTGCCACATAACAACACC 59.760 55.000 0.00 0.00 45.87 4.16
136 137 0.948678 ACGGTGCCACATAACAACAC 59.051 50.000 0.00 0.00 0.00 3.32
137 138 1.335182 CAACGGTGCCACATAACAACA 59.665 47.619 0.00 0.00 0.00 3.33
138 139 1.604755 TCAACGGTGCCACATAACAAC 59.395 47.619 0.00 0.00 0.00 3.32
139 140 1.876799 CTCAACGGTGCCACATAACAA 59.123 47.619 0.00 0.00 0.00 2.83
140 141 1.070914 TCTCAACGGTGCCACATAACA 59.929 47.619 0.00 0.00 0.00 2.41
141 142 1.463444 GTCTCAACGGTGCCACATAAC 59.537 52.381 0.00 0.00 0.00 1.89
142 143 1.803334 GTCTCAACGGTGCCACATAA 58.197 50.000 0.00 0.00 0.00 1.90
143 144 0.389296 CGTCTCAACGGTGCCACATA 60.389 55.000 0.00 0.00 45.21 2.29
144 145 1.667830 CGTCTCAACGGTGCCACAT 60.668 57.895 0.00 0.00 45.21 3.21
145 146 2.279851 CGTCTCAACGGTGCCACA 60.280 61.111 0.00 0.00 45.21 4.17
154 155 3.733024 TGAACAACAACACGTCTCAAC 57.267 42.857 0.00 0.00 0.00 3.18
155 156 3.064682 CCATGAACAACAACACGTCTCAA 59.935 43.478 0.00 0.00 0.00 3.02
156 157 2.611751 CCATGAACAACAACACGTCTCA 59.388 45.455 0.00 0.00 0.00 3.27
157 158 2.612212 ACCATGAACAACAACACGTCTC 59.388 45.455 0.00 0.00 0.00 3.36
158 159 2.612212 GACCATGAACAACAACACGTCT 59.388 45.455 0.00 0.00 0.00 4.18
159 160 2.353269 TGACCATGAACAACAACACGTC 59.647 45.455 0.00 0.00 0.00 4.34
160 161 2.360844 TGACCATGAACAACAACACGT 58.639 42.857 0.00 0.00 0.00 4.49
161 162 3.250762 AGATGACCATGAACAACAACACG 59.749 43.478 0.00 0.00 0.00 4.49
162 163 4.836125 AGATGACCATGAACAACAACAC 57.164 40.909 0.00 0.00 0.00 3.32
163 164 7.523293 AAATAGATGACCATGAACAACAACA 57.477 32.000 0.00 0.00 0.00 3.33
164 165 8.081633 TCAAAATAGATGACCATGAACAACAAC 58.918 33.333 0.00 0.00 0.00 3.32
165 166 8.175925 TCAAAATAGATGACCATGAACAACAA 57.824 30.769 0.00 0.00 0.00 2.83
166 167 7.665145 TCTCAAAATAGATGACCATGAACAACA 59.335 33.333 0.00 0.00 0.00 3.33
167 168 8.044060 TCTCAAAATAGATGACCATGAACAAC 57.956 34.615 0.00 0.00 0.00 3.32
168 169 8.812513 ATCTCAAAATAGATGACCATGAACAA 57.187 30.769 0.00 0.00 34.87 2.83
180 181 4.523173 CCATGCCAGCATCTCAAAATAGAT 59.477 41.667 1.19 0.00 36.64 1.98
181 182 3.887110 CCATGCCAGCATCTCAAAATAGA 59.113 43.478 1.19 0.00 33.90 1.98
182 183 3.635373 ACCATGCCAGCATCTCAAAATAG 59.365 43.478 1.19 0.00 33.90 1.73
183 184 3.382227 CACCATGCCAGCATCTCAAAATA 59.618 43.478 1.19 0.00 33.90 1.40
184 185 2.167693 CACCATGCCAGCATCTCAAAAT 59.832 45.455 1.19 0.00 33.90 1.82
185 186 1.546923 CACCATGCCAGCATCTCAAAA 59.453 47.619 1.19 0.00 33.90 2.44
186 187 1.179152 CACCATGCCAGCATCTCAAA 58.821 50.000 1.19 0.00 33.90 2.69
187 188 0.681887 CCACCATGCCAGCATCTCAA 60.682 55.000 1.19 0.00 33.90 3.02
188 189 1.077285 CCACCATGCCAGCATCTCA 60.077 57.895 1.19 0.00 33.90 3.27
189 190 0.181114 TACCACCATGCCAGCATCTC 59.819 55.000 1.19 0.00 33.90 2.75
190 191 0.625316 TTACCACCATGCCAGCATCT 59.375 50.000 1.19 0.00 33.90 2.90
191 192 1.473258 TTTACCACCATGCCAGCATC 58.527 50.000 1.19 0.00 33.90 3.91
192 193 2.163810 ATTTACCACCATGCCAGCAT 57.836 45.000 0.00 0.00 37.08 3.79
193 194 2.374184 GTATTTACCACCATGCCAGCA 58.626 47.619 0.00 0.00 0.00 4.41
194 195 1.681264 GGTATTTACCACCATGCCAGC 59.319 52.381 1.79 0.00 45.73 4.85
205 206 7.608761 TGGTACATCAAAAGTCTGGTATTTACC 59.391 37.037 0.00 0.00 46.62 2.85
206 207 8.556213 TGGTACATCAAAAGTCTGGTATTTAC 57.444 34.615 0.00 0.00 0.00 2.01
207 208 8.380099 ACTGGTACATCAAAAGTCTGGTATTTA 58.620 33.333 0.00 0.00 38.20 1.40
208 209 7.174946 CACTGGTACATCAAAAGTCTGGTATTT 59.825 37.037 0.00 0.00 38.20 1.40
209 210 6.655003 CACTGGTACATCAAAAGTCTGGTATT 59.345 38.462 0.00 0.00 38.20 1.89
210 211 6.173339 CACTGGTACATCAAAAGTCTGGTAT 58.827 40.000 0.00 0.00 38.20 2.73
211 212 5.547465 CACTGGTACATCAAAAGTCTGGTA 58.453 41.667 0.00 0.00 38.20 3.25
212 213 4.389374 CACTGGTACATCAAAAGTCTGGT 58.611 43.478 0.00 0.00 38.20 4.00
213 214 3.189287 GCACTGGTACATCAAAAGTCTGG 59.811 47.826 0.00 0.00 38.20 3.86
214 215 3.814842 TGCACTGGTACATCAAAAGTCTG 59.185 43.478 0.00 0.00 38.20 3.51
215 216 3.815401 GTGCACTGGTACATCAAAAGTCT 59.185 43.478 10.32 0.00 38.20 3.24
216 217 3.363970 CGTGCACTGGTACATCAAAAGTC 60.364 47.826 16.19 0.00 38.20 3.01
217 218 2.548057 CGTGCACTGGTACATCAAAAGT 59.452 45.455 16.19 0.00 38.20 2.66
218 219 2.805671 TCGTGCACTGGTACATCAAAAG 59.194 45.455 16.19 0.00 38.20 2.27
219 220 2.546368 GTCGTGCACTGGTACATCAAAA 59.454 45.455 16.19 0.00 38.20 2.44
220 221 2.139917 GTCGTGCACTGGTACATCAAA 58.860 47.619 16.19 0.00 38.20 2.69
221 222 1.069358 TGTCGTGCACTGGTACATCAA 59.931 47.619 16.19 0.00 38.20 2.57
222 223 0.676736 TGTCGTGCACTGGTACATCA 59.323 50.000 16.19 0.00 38.20 3.07
223 224 2.010145 ATGTCGTGCACTGGTACATC 57.990 50.000 16.19 0.00 38.20 3.06
224 225 2.076100 CAATGTCGTGCACTGGTACAT 58.924 47.619 16.19 15.11 38.20 2.29
225 226 1.507562 CAATGTCGTGCACTGGTACA 58.492 50.000 16.19 13.55 0.00 2.90
226 227 0.165944 GCAATGTCGTGCACTGGTAC 59.834 55.000 16.19 8.27 44.29 3.34
227 228 2.539003 GCAATGTCGTGCACTGGTA 58.461 52.632 16.19 0.00 44.29 3.25
228 229 3.343972 GCAATGTCGTGCACTGGT 58.656 55.556 16.19 0.00 44.29 4.00
234 235 1.456544 CAAACCAATGCAATGTCGTGC 59.543 47.619 0.21 0.00 45.15 5.34
235 236 1.456544 GCAAACCAATGCAATGTCGTG 59.543 47.619 0.21 0.00 45.70 4.35
236 237 1.782044 GCAAACCAATGCAATGTCGT 58.218 45.000 0.21 0.00 45.70 4.34
244 245 3.970721 GCCAAGGCAAACCAATGC 58.029 55.556 6.14 0.00 45.67 3.56
261 262 5.812642 CCAACTAGAGTTTACTGGCAGTATG 59.187 44.000 26.71 17.65 35.83 2.39
262 263 5.627040 GCCAACTAGAGTTTACTGGCAGTAT 60.627 44.000 26.71 13.31 43.86 2.12
263 264 4.322499 GCCAACTAGAGTTTACTGGCAGTA 60.322 45.833 22.96 22.96 43.86 2.74
264 265 3.557264 GCCAACTAGAGTTTACTGGCAGT 60.557 47.826 25.34 25.34 43.86 4.40
265 266 3.003480 GCCAACTAGAGTTTACTGGCAG 58.997 50.000 14.16 14.16 43.86 4.85
266 267 3.053831 GCCAACTAGAGTTTACTGGCA 57.946 47.619 15.22 0.00 43.86 4.92
267 268 3.053831 TGCCAACTAGAGTTTACTGGC 57.946 47.619 13.81 13.81 44.38 4.85
268 269 5.091261 AGATGCCAACTAGAGTTTACTGG 57.909 43.478 0.00 0.00 35.83 4.00
269 270 5.352569 CCAAGATGCCAACTAGAGTTTACTG 59.647 44.000 0.00 0.00 35.83 2.74
270 271 5.491982 CCAAGATGCCAACTAGAGTTTACT 58.508 41.667 0.00 0.00 35.83 2.24
271 272 4.636206 CCCAAGATGCCAACTAGAGTTTAC 59.364 45.833 0.00 0.00 35.83 2.01
272 273 4.324254 CCCCAAGATGCCAACTAGAGTTTA 60.324 45.833 0.00 0.00 35.83 2.01
273 274 3.562176 CCCCAAGATGCCAACTAGAGTTT 60.562 47.826 0.00 0.00 35.83 2.66
274 275 2.025887 CCCCAAGATGCCAACTAGAGTT 60.026 50.000 0.00 0.00 39.12 3.01
275 276 1.561542 CCCCAAGATGCCAACTAGAGT 59.438 52.381 0.00 0.00 0.00 3.24
276 277 1.133976 CCCCCAAGATGCCAACTAGAG 60.134 57.143 0.00 0.00 0.00 2.43
277 278 0.918983 CCCCCAAGATGCCAACTAGA 59.081 55.000 0.00 0.00 0.00 2.43
278 279 3.502164 CCCCCAAGATGCCAACTAG 57.498 57.895 0.00 0.00 0.00 2.57
294 295 1.071699 GCCCAAAAGAAAAAGACCCCC 59.928 52.381 0.00 0.00 0.00 5.40
295 296 2.047061 AGCCCAAAAGAAAAAGACCCC 58.953 47.619 0.00 0.00 0.00 4.95
296 297 2.806745 GCAGCCCAAAAGAAAAAGACCC 60.807 50.000 0.00 0.00 0.00 4.46
297 298 2.103094 AGCAGCCCAAAAGAAAAAGACC 59.897 45.455 0.00 0.00 0.00 3.85
298 299 3.181476 TGAGCAGCCCAAAAGAAAAAGAC 60.181 43.478 0.00 0.00 0.00 3.01
299 300 3.030291 TGAGCAGCCCAAAAGAAAAAGA 58.970 40.909 0.00 0.00 0.00 2.52
300 301 3.457610 TGAGCAGCCCAAAAGAAAAAG 57.542 42.857 0.00 0.00 0.00 2.27
301 302 3.387374 TCATGAGCAGCCCAAAAGAAAAA 59.613 39.130 0.00 0.00 0.00 1.94
302 303 2.964464 TCATGAGCAGCCCAAAAGAAAA 59.036 40.909 0.00 0.00 0.00 2.29
303 304 2.596346 TCATGAGCAGCCCAAAAGAAA 58.404 42.857 0.00 0.00 0.00 2.52
304 305 2.291209 TCATGAGCAGCCCAAAAGAA 57.709 45.000 0.00 0.00 0.00 2.52
305 306 2.291209 TTCATGAGCAGCCCAAAAGA 57.709 45.000 0.00 0.00 0.00 2.52
306 307 2.036217 TGTTTCATGAGCAGCCCAAAAG 59.964 45.455 0.00 0.00 0.00 2.27
307 308 2.037901 TGTTTCATGAGCAGCCCAAAA 58.962 42.857 0.00 0.00 0.00 2.44
308 309 1.702182 TGTTTCATGAGCAGCCCAAA 58.298 45.000 0.00 0.00 0.00 3.28
309 310 1.546923 CATGTTTCATGAGCAGCCCAA 59.453 47.619 3.96 0.00 0.00 4.12
310 311 1.179152 CATGTTTCATGAGCAGCCCA 58.821 50.000 3.96 0.00 0.00 5.36
311 312 0.458669 CCATGTTTCATGAGCAGCCC 59.541 55.000 10.75 0.00 0.00 5.19
312 313 1.466856 TCCATGTTTCATGAGCAGCC 58.533 50.000 10.75 0.00 0.00 4.85
313 314 3.581024 TTTCCATGTTTCATGAGCAGC 57.419 42.857 10.75 0.00 0.00 5.25
314 315 4.796830 CGAATTTCCATGTTTCATGAGCAG 59.203 41.667 10.75 0.00 0.00 4.24
315 316 4.380761 CCGAATTTCCATGTTTCATGAGCA 60.381 41.667 10.75 0.00 0.00 4.26
316 317 4.107622 CCGAATTTCCATGTTTCATGAGC 58.892 43.478 10.75 0.00 0.00 4.26
317 318 4.107622 GCCGAATTTCCATGTTTCATGAG 58.892 43.478 10.75 2.60 0.00 2.90
318 319 3.763360 AGCCGAATTTCCATGTTTCATGA 59.237 39.130 10.75 0.00 0.00 3.07
319 320 3.861113 CAGCCGAATTTCCATGTTTCATG 59.139 43.478 3.11 3.11 0.00 3.07
320 321 3.511146 ACAGCCGAATTTCCATGTTTCAT 59.489 39.130 0.00 0.00 0.00 2.57
321 322 2.890311 ACAGCCGAATTTCCATGTTTCA 59.110 40.909 0.00 0.00 0.00 2.69
322 323 3.575965 ACAGCCGAATTTCCATGTTTC 57.424 42.857 0.00 0.00 0.00 2.78
323 324 4.335400 AAACAGCCGAATTTCCATGTTT 57.665 36.364 12.14 12.14 36.37 2.83
324 325 5.461032 TTAAACAGCCGAATTTCCATGTT 57.539 34.783 0.00 3.83 32.55 2.71
325 326 4.618227 GCTTAAACAGCCGAATTTCCATGT 60.618 41.667 0.00 0.00 43.65 3.21
326 327 3.859386 GCTTAAACAGCCGAATTTCCATG 59.141 43.478 0.00 0.00 43.65 3.66
327 328 4.110036 GCTTAAACAGCCGAATTTCCAT 57.890 40.909 0.00 0.00 43.65 3.41
328 329 3.569250 GCTTAAACAGCCGAATTTCCA 57.431 42.857 0.00 0.00 43.65 3.53
347 348 3.503363 CAACAGCTAGCGCCCTGC 61.503 66.667 17.12 13.14 46.98 4.85
348 349 1.153289 ATCAACAGCTAGCGCCCTG 60.153 57.895 9.55 16.00 36.60 4.45
349 350 1.153289 CATCAACAGCTAGCGCCCT 60.153 57.895 9.55 0.00 36.60 5.19
350 351 2.828128 GCATCAACAGCTAGCGCCC 61.828 63.158 9.55 0.00 36.60 6.13
351 352 1.372087 AAGCATCAACAGCTAGCGCC 61.372 55.000 9.55 0.00 42.53 6.53
352 353 1.290203 TAAGCATCAACAGCTAGCGC 58.710 50.000 9.55 0.00 42.53 5.92
353 354 3.303593 CCAATAAGCATCAACAGCTAGCG 60.304 47.826 9.55 7.05 42.53 4.26
354 355 3.004106 CCCAATAAGCATCAACAGCTAGC 59.996 47.826 6.62 6.62 42.53 3.42
355 356 3.567164 CCCCAATAAGCATCAACAGCTAG 59.433 47.826 0.00 0.00 42.53 3.42
356 357 3.554934 CCCCAATAAGCATCAACAGCTA 58.445 45.455 0.00 0.00 42.53 3.32
357 358 2.381911 CCCCAATAAGCATCAACAGCT 58.618 47.619 0.00 0.00 45.97 4.24
358 359 1.410153 CCCCCAATAAGCATCAACAGC 59.590 52.381 0.00 0.00 0.00 4.40
359 360 3.017048 TCCCCCAATAAGCATCAACAG 57.983 47.619 0.00 0.00 0.00 3.16
360 361 3.464720 TTCCCCCAATAAGCATCAACA 57.535 42.857 0.00 0.00 0.00 3.33
361 362 4.023291 TCTTTCCCCCAATAAGCATCAAC 58.977 43.478 0.00 0.00 0.00 3.18
362 363 4.023291 GTCTTTCCCCCAATAAGCATCAA 58.977 43.478 0.00 0.00 0.00 2.57
363 364 3.011144 TGTCTTTCCCCCAATAAGCATCA 59.989 43.478 0.00 0.00 0.00 3.07
364 365 3.631250 TGTCTTTCCCCCAATAAGCATC 58.369 45.455 0.00 0.00 0.00 3.91
365 366 3.635591 CTGTCTTTCCCCCAATAAGCAT 58.364 45.455 0.00 0.00 0.00 3.79
366 367 2.883888 GCTGTCTTTCCCCCAATAAGCA 60.884 50.000 0.00 0.00 0.00 3.91
367 368 1.751351 GCTGTCTTTCCCCCAATAAGC 59.249 52.381 0.00 0.00 0.00 3.09
368 369 2.379005 GGCTGTCTTTCCCCCAATAAG 58.621 52.381 0.00 0.00 0.00 1.73
369 370 1.340600 CGGCTGTCTTTCCCCCAATAA 60.341 52.381 0.00 0.00 0.00 1.40
370 371 0.254747 CGGCTGTCTTTCCCCCAATA 59.745 55.000 0.00 0.00 0.00 1.90
371 372 1.000896 CGGCTGTCTTTCCCCCAAT 60.001 57.895 0.00 0.00 0.00 3.16
372 373 2.434331 CGGCTGTCTTTCCCCCAA 59.566 61.111 0.00 0.00 0.00 4.12
373 374 4.344865 GCGGCTGTCTTTCCCCCA 62.345 66.667 0.00 0.00 0.00 4.96
375 376 4.035102 AGGCGGCTGTCTTTCCCC 62.035 66.667 12.25 0.00 0.00 4.81
376 377 2.747855 CAGGCGGCTGTCTTTCCC 60.748 66.667 29.42 0.00 0.00 3.97
377 378 2.543067 ATCCAGGCGGCTGTCTTTCC 62.543 60.000 33.68 0.00 0.00 3.13
378 379 0.178068 TATCCAGGCGGCTGTCTTTC 59.822 55.000 33.68 0.00 0.00 2.62
379 380 0.839946 ATATCCAGGCGGCTGTCTTT 59.160 50.000 33.68 18.83 0.00 2.52
380 381 0.107456 CATATCCAGGCGGCTGTCTT 59.893 55.000 33.68 21.08 0.00 3.01
381 382 1.750930 CATATCCAGGCGGCTGTCT 59.249 57.895 33.68 23.24 0.00 3.41
382 383 1.302033 CCATATCCAGGCGGCTGTC 60.302 63.158 33.68 0.00 0.00 3.51
383 384 1.130054 ATCCATATCCAGGCGGCTGT 61.130 55.000 33.68 20.95 0.00 4.40
384 385 0.904649 TATCCATATCCAGGCGGCTG 59.095 55.000 30.63 30.63 0.00 4.85
385 386 1.885049 ATATCCATATCCAGGCGGCT 58.115 50.000 5.25 5.25 0.00 5.52
386 387 2.292267 CAATATCCATATCCAGGCGGC 58.708 52.381 0.00 0.00 0.00 6.53
387 388 2.239654 ACCAATATCCATATCCAGGCGG 59.760 50.000 0.00 0.00 0.00 6.13
388 389 3.273434 CACCAATATCCATATCCAGGCG 58.727 50.000 0.00 0.00 0.00 5.52
389 390 3.019564 GCACCAATATCCATATCCAGGC 58.980 50.000 0.00 0.00 0.00 4.85
390 391 4.581309 AGCACCAATATCCATATCCAGG 57.419 45.455 0.00 0.00 0.00 4.45
391 392 5.813383 AGAAGCACCAATATCCATATCCAG 58.187 41.667 0.00 0.00 0.00 3.86
392 393 5.848286 AGAAGCACCAATATCCATATCCA 57.152 39.130 0.00 0.00 0.00 3.41
393 394 5.105997 GCAAGAAGCACCAATATCCATATCC 60.106 44.000 0.00 0.00 44.79 2.59
394 395 5.947443 GCAAGAAGCACCAATATCCATATC 58.053 41.667 0.00 0.00 44.79 1.63
395 396 5.972107 GCAAGAAGCACCAATATCCATAT 57.028 39.130 0.00 0.00 44.79 1.78
409 410 1.427020 GGCGATGACTGCAAGAAGC 59.573 57.895 0.00 0.00 45.96 3.86
410 411 1.699656 CCGGCGATGACTGCAAGAAG 61.700 60.000 9.30 0.00 37.43 2.85
411 412 1.741401 CCGGCGATGACTGCAAGAA 60.741 57.895 9.30 0.00 37.43 2.52
412 413 2.125552 CCGGCGATGACTGCAAGA 60.126 61.111 9.30 0.00 37.43 3.02
413 414 3.197790 CCCGGCGATGACTGCAAG 61.198 66.667 9.30 0.00 42.29 4.01
414 415 4.015406 ACCCGGCGATGACTGCAA 62.015 61.111 9.30 0.00 0.00 4.08
415 416 4.758251 CACCCGGCGATGACTGCA 62.758 66.667 9.30 0.00 0.00 4.41
437 438 3.788766 CTTGCCGCTTTCGTCCGG 61.789 66.667 0.00 0.00 46.94 5.14
438 439 4.445545 GCTTGCCGCTTTCGTCCG 62.446 66.667 0.00 0.00 35.14 4.79
439 440 4.103103 GGCTTGCCGCTTTCGTCC 62.103 66.667 0.00 0.00 39.13 4.79
440 441 3.353836 TGGCTTGCCGCTTTCGTC 61.354 61.111 7.18 0.00 39.13 4.20
441 442 3.660111 GTGGCTTGCCGCTTTCGT 61.660 61.111 16.96 0.00 39.13 3.85
442 443 4.741781 CGTGGCTTGCCGCTTTCG 62.742 66.667 20.84 10.07 39.13 3.46
455 456 2.882777 CTGCAGTCTAGCGCGTGG 60.883 66.667 8.43 0.00 37.31 4.94
456 457 3.549150 GCTGCAGTCTAGCGCGTG 61.549 66.667 16.64 0.00 37.31 5.34
457 458 4.803426 GGCTGCAGTCTAGCGCGT 62.803 66.667 16.64 0.00 42.03 6.01
458 459 4.504916 AGGCTGCAGTCTAGCGCG 62.505 66.667 21.80 0.00 42.03 6.86
459 460 2.889503 CAGGCTGCAGTCTAGCGC 60.890 66.667 22.74 0.00 42.03 5.92
460 461 1.079543 AACAGGCTGCAGTCTAGCG 60.080 57.895 22.74 11.79 42.03 4.26
461 462 0.036952 TCAACAGGCTGCAGTCTAGC 60.037 55.000 22.74 2.83 40.41 3.42
462 463 1.274728 ACTCAACAGGCTGCAGTCTAG 59.725 52.381 22.74 17.21 0.00 2.43
463 464 1.342074 ACTCAACAGGCTGCAGTCTA 58.658 50.000 22.74 4.13 0.00 2.59
464 465 0.471617 AACTCAACAGGCTGCAGTCT 59.528 50.000 16.96 16.96 0.00 3.24
465 466 2.169832 TAACTCAACAGGCTGCAGTC 57.830 50.000 15.89 11.28 0.00 3.51
466 467 2.638480 TTAACTCAACAGGCTGCAGT 57.362 45.000 15.89 11.36 0.00 4.40
467 468 4.455533 TGTAATTAACTCAACAGGCTGCAG 59.544 41.667 15.89 10.11 0.00 4.41
468 469 4.215399 GTGTAATTAACTCAACAGGCTGCA 59.785 41.667 15.89 0.00 0.00 4.41
469 470 4.669197 CGTGTAATTAACTCAACAGGCTGC 60.669 45.833 15.89 0.00 0.00 5.25
470 471 4.688879 TCGTGTAATTAACTCAACAGGCTG 59.311 41.667 14.16 14.16 0.00 4.85
471 472 4.890088 TCGTGTAATTAACTCAACAGGCT 58.110 39.130 0.00 0.00 0.00 4.58
472 473 5.796350 ATCGTGTAATTAACTCAACAGGC 57.204 39.130 0.00 0.00 0.00 4.85
473 474 9.017669 GTACTATCGTGTAATTAACTCAACAGG 57.982 37.037 0.00 0.00 0.00 4.00
474 475 9.017669 GGTACTATCGTGTAATTAACTCAACAG 57.982 37.037 0.00 0.00 0.00 3.16
475 476 8.522003 TGGTACTATCGTGTAATTAACTCAACA 58.478 33.333 0.00 0.00 0.00 3.33
476 477 8.801913 GTGGTACTATCGTGTAATTAACTCAAC 58.198 37.037 0.00 0.00 0.00 3.18
581 582 0.899720 ACGAGGTTTAGCCCGATTCA 59.100 50.000 0.00 0.00 38.26 2.57
685 686 1.676678 GAGCCAGACCGCACCTATCA 61.677 60.000 0.00 0.00 0.00 2.15
699 700 3.691342 CCGGTCCAGTTCGAGCCA 61.691 66.667 0.00 0.00 0.00 4.75
900 903 3.160269 CTCAAGGAAAATCACCTGGCTT 58.840 45.455 0.00 0.00 37.85 4.35
1012 1017 4.344865 GCTGAAAGGGACCCGCCA 62.345 66.667 4.40 3.65 38.95 5.69
1129 1134 3.514309 GCTAAGAACCTTCTCCCTGTGTA 59.486 47.826 0.00 0.00 36.28 2.90
1481 1510 0.761802 TGGGCAAAAACAATCCCACC 59.238 50.000 0.00 0.00 43.40 4.61
1607 1640 9.686683 ATCAATATTTAGTTACAAACAGGAGCT 57.313 29.630 0.00 0.00 0.00 4.09
1742 1776 5.818857 ACAAAAGCAATCTCAAACTGCAAAT 59.181 32.000 0.00 0.00 38.58 2.32
2018 2116 1.545204 GCATTTTGCATTGTTGGGGGT 60.545 47.619 0.00 0.00 44.26 4.95
2298 4846 5.824624 TCTCAAACTCTGCATCTTTCTTTGT 59.175 36.000 0.00 0.00 0.00 2.83
2798 9420 9.466497 TTTAGATGCATAGTTCATCCTTTTCTT 57.534 29.630 0.00 0.00 40.79 2.52
2995 9668 5.185454 TCCAGTGCTAACATAACCATCAAG 58.815 41.667 0.00 0.00 0.00 3.02
3068 9742 1.303236 TAACTCGGGGTCGACGGAA 60.303 57.895 9.92 0.00 40.88 4.30
3274 14249 1.229368 TGTGCACCAGGGGCTACTA 60.229 57.895 16.83 0.00 0.00 1.82
3539 14514 0.599558 CCACTGGTGCACAAATCCTG 59.400 55.000 20.43 7.40 0.00 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.