Multiple sequence alignment - TraesCS2A01G437300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G437300 chr2A 100.000 4360 0 0 1 4360 689170528 689166169 0.000000e+00 8052.0
1 TraesCS2A01G437300 chr2A 100.000 2235 0 0 4689 6923 689165840 689163606 0.000000e+00 4128.0
2 TraesCS2A01G437300 chr2A 91.497 882 72 2 6041 6922 559108042 559107164 0.000000e+00 1210.0
3 TraesCS2A01G437300 chr2A 90.682 880 82 0 6043 6922 446012079 446012958 0.000000e+00 1171.0
4 TraesCS2A01G437300 chr2B 87.226 4149 285 102 15 4036 650481178 650485208 0.000000e+00 4499.0
5 TraesCS2A01G437300 chr2B 93.750 656 32 5 4712 5365 650485368 650486016 0.000000e+00 976.0
6 TraesCS2A01G437300 chr2B 93.015 544 29 7 5505 6043 650486014 650486553 0.000000e+00 785.0
7 TraesCS2A01G437300 chr2B 94.595 148 4 1 5366 5509 40526945 40526798 6.990000e-55 226.0
8 TraesCS2A01G437300 chr2B 94.245 139 8 0 5365 5503 790791176 790791314 5.440000e-51 213.0
9 TraesCS2A01G437300 chr2D 87.147 1945 106 61 983 2864 544684242 544686105 0.000000e+00 2074.0
10 TraesCS2A01G437300 chr2D 88.480 1441 80 37 2938 4324 544686217 544687625 0.000000e+00 1663.0
11 TraesCS2A01G437300 chr2D 91.506 883 69 5 6041 6922 201456613 201455736 0.000000e+00 1210.0
12 TraesCS2A01G437300 chr2D 90.950 895 76 4 6032 6922 511532379 511531486 0.000000e+00 1199.0
13 TraesCS2A01G437300 chr2D 91.415 862 68 3 6041 6900 429202968 429202111 0.000000e+00 1177.0
14 TraesCS2A01G437300 chr2D 93.558 683 30 2 4689 5365 544687707 544688381 0.000000e+00 1005.0
15 TraesCS2A01G437300 chr2D 87.555 683 77 6 1 678 544683403 544684082 0.000000e+00 784.0
16 TraesCS2A01G437300 chr2D 93.424 517 24 8 5505 6016 544688379 544688890 0.000000e+00 758.0
17 TraesCS2A01G437300 chr2D 94.048 84 5 0 4277 4360 544687607 544687690 2.030000e-25 128.0
18 TraesCS2A01G437300 chr7A 91.506 883 64 6 6043 6922 207895027 207894153 0.000000e+00 1205.0
19 TraesCS2A01G437300 chr5A 91.468 879 72 3 6046 6922 536261502 536260625 0.000000e+00 1205.0
20 TraesCS2A01G437300 chr5A 91.280 883 76 1 6041 6922 634469223 634468341 0.000000e+00 1203.0
21 TraesCS2A01G437300 chr5A 80.198 101 18 2 489 588 693634581 693634482 2.680000e-09 75.0
22 TraesCS2A01G437300 chr5D 90.950 884 74 3 6041 6922 493829291 493830170 0.000000e+00 1184.0
23 TraesCS2A01G437300 chr4B 100.000 145 0 0 5363 5507 70572308 70572452 1.140000e-67 268.0
24 TraesCS2A01G437300 chr4B 99.301 143 0 1 5363 5505 28163501 28163360 2.480000e-64 257.0
25 TraesCS2A01G437300 chr4B 83.019 106 16 2 484 588 122845584 122845688 2.060000e-15 95.3
26 TraesCS2A01G437300 chr4A 100.000 141 0 0 5365 5505 660438835 660438695 1.920000e-65 261.0
27 TraesCS2A01G437300 chr7B 97.872 141 3 0 5366 5506 7245636 7245496 1.930000e-60 244.0
28 TraesCS2A01G437300 chr6B 94.326 141 7 1 5365 5505 703479899 703479760 1.510000e-51 215.0
29 TraesCS2A01G437300 chr6B 90.968 155 12 2 5358 5511 653762603 653762450 2.530000e-49 207.0
30 TraesCS2A01G437300 chr1B 92.414 145 10 1 5360 5504 685245251 685245394 9.100000e-49 206.0
31 TraesCS2A01G437300 chr3D 90.361 83 6 2 506 587 390197087 390197168 2.640000e-19 108.0
32 TraesCS2A01G437300 chr3B 96.296 54 1 1 2372 2425 823871727 823871779 3.440000e-13 87.9
33 TraesCS2A01G437300 chrUn 86.667 75 9 1 1506 1580 37325607 37325680 1.600000e-11 82.4
34 TraesCS2A01G437300 chr3A 89.231 65 7 0 1516 1580 26012581 26012517 1.600000e-11 82.4
35 TraesCS2A01G437300 chr1D 83.784 74 11 1 516 588 326977158 326977085 1.250000e-07 69.4
36 TraesCS2A01G437300 chr1A 81.081 74 13 1 516 588 409790788 409790861 2.700000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G437300 chr2A 689163606 689170528 6922 True 6090.000000 8052 100.000000 1 6923 2 chr2A.!!$R2 6922
1 TraesCS2A01G437300 chr2A 559107164 559108042 878 True 1210.000000 1210 91.497000 6041 6922 1 chr2A.!!$R1 881
2 TraesCS2A01G437300 chr2A 446012079 446012958 879 False 1171.000000 1171 90.682000 6043 6922 1 chr2A.!!$F1 879
3 TraesCS2A01G437300 chr2B 650481178 650486553 5375 False 2086.666667 4499 91.330333 15 6043 3 chr2B.!!$F2 6028
4 TraesCS2A01G437300 chr2D 201455736 201456613 877 True 1210.000000 1210 91.506000 6041 6922 1 chr2D.!!$R1 881
5 TraesCS2A01G437300 chr2D 511531486 511532379 893 True 1199.000000 1199 90.950000 6032 6922 1 chr2D.!!$R3 890
6 TraesCS2A01G437300 chr2D 429202111 429202968 857 True 1177.000000 1177 91.415000 6041 6900 1 chr2D.!!$R2 859
7 TraesCS2A01G437300 chr2D 544683403 544688890 5487 False 1068.666667 2074 90.702000 1 6016 6 chr2D.!!$F1 6015
8 TraesCS2A01G437300 chr7A 207894153 207895027 874 True 1205.000000 1205 91.506000 6043 6922 1 chr7A.!!$R1 879
9 TraesCS2A01G437300 chr5A 536260625 536261502 877 True 1205.000000 1205 91.468000 6046 6922 1 chr5A.!!$R1 876
10 TraesCS2A01G437300 chr5A 634468341 634469223 882 True 1203.000000 1203 91.280000 6041 6922 1 chr5A.!!$R2 881
11 TraesCS2A01G437300 chr5D 493829291 493830170 879 False 1184.000000 1184 90.950000 6041 6922 1 chr5D.!!$F1 881

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
841 884 0.609131 ACGCCAACCTCCCTTCAATG 60.609 55.0 0.0 0.0 0.00 2.82 F
1049 1109 0.036199 AAAGGCAGAGCAGAGCAGAG 60.036 55.0 0.0 0.0 0.00 3.35 F
1054 1114 0.742505 CAGAGCAGAGCAGAGGAGAG 59.257 60.0 0.0 0.0 0.00 3.20 F
2753 2884 0.959372 CAGCTTCCCTTGTCTGGCTG 60.959 60.0 0.0 0.0 40.52 4.85 F
3249 3440 0.106419 TCTTTTTGTCCCCAGCCGTT 60.106 50.0 0.0 0.0 0.00 4.44 F
3739 3940 0.170784 TGTGCGTGCCAATAATGCTG 59.829 50.0 0.0 0.0 0.00 4.41 F
5224 5507 0.321298 CCGGGAAAAAGAGCGAGGAA 60.321 55.0 0.0 0.0 0.00 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2717 2846 0.102120 CTGCGAGAGATGAGGACACC 59.898 60.0 0.00 0.00 0.00 4.16 R
2726 2855 0.177604 CAAGGGAAGCTGCGAGAGAT 59.822 55.0 0.00 0.00 0.00 2.75 R
3037 3221 0.319469 CCCCGGTTTGATTTGTGCAC 60.319 55.0 10.75 10.75 0.00 4.57 R
3761 3962 0.310854 GATAAAAAGGGCGGGCGATG 59.689 55.0 0.00 0.00 0.00 3.84 R
5224 5507 0.250901 ACCCGCTCTGCAAACTGAAT 60.251 50.0 0.00 0.00 0.00 2.57 R
5288 5571 0.042708 CGAGAATTCAGCGCAATCGG 60.043 55.0 11.47 0.00 35.95 4.18 R
6036 6323 0.034059 CCGTTGGAGTTGCTCTCAGT 59.966 55.0 10.56 0.00 44.40 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 2.416547 CCTAGCACACTTTGATGAACGG 59.583 50.000 0.00 0.00 0.00 4.44
78 79 2.614013 GGTCATGGGGAGGGTGGT 60.614 66.667 0.00 0.00 0.00 4.16
83 84 3.970363 ATGGGGAGGGTGGTGGGAG 62.970 68.421 0.00 0.00 0.00 4.30
85 86 3.009714 GGGAGGGTGGTGGGAGAC 61.010 72.222 0.00 0.00 0.00 3.36
86 87 3.391382 GGAGGGTGGTGGGAGACG 61.391 72.222 0.00 0.00 0.00 4.18
87 88 3.391382 GAGGGTGGTGGGAGACGG 61.391 72.222 0.00 0.00 0.00 4.79
88 89 3.899545 GAGGGTGGTGGGAGACGGA 62.900 68.421 0.00 0.00 0.00 4.69
91 100 1.987855 GGTGGTGGGAGACGGATCA 60.988 63.158 0.00 0.00 0.00 2.92
102 111 5.542251 TGGGAGACGGATCAATGTATAATCA 59.458 40.000 0.00 0.00 0.00 2.57
103 112 6.213397 TGGGAGACGGATCAATGTATAATCAT 59.787 38.462 0.00 0.00 0.00 2.45
104 113 7.398904 TGGGAGACGGATCAATGTATAATCATA 59.601 37.037 0.00 0.00 0.00 2.15
105 114 8.258007 GGGAGACGGATCAATGTATAATCATAA 58.742 37.037 0.00 0.00 0.00 1.90
106 115 9.823647 GGAGACGGATCAATGTATAATCATAAT 57.176 33.333 0.00 0.00 0.00 1.28
128 138 3.395639 TGTACCACGTGTTGAAATCTCC 58.604 45.455 15.65 0.00 0.00 3.71
191 201 5.189736 TGCCTAGTTCATCATGGACTAAACT 59.810 40.000 7.25 0.99 0.00 2.66
201 211 6.494893 TCATGGACTAAACTGTGCATTTAC 57.505 37.500 0.00 0.00 44.56 2.01
230 240 3.312421 TGCATCTCATTAAAGCGCCTTAC 59.688 43.478 2.29 0.00 0.00 2.34
260 270 7.260603 TCAGCATGATGATATTATAGTCGGTG 58.739 38.462 10.16 0.00 42.56 4.94
262 272 6.381133 AGCATGATGATATTATAGTCGGTGGA 59.619 38.462 0.00 0.00 0.00 4.02
281 291 5.463724 GGTGGAATGATCTTTATCGTGACTC 59.536 44.000 0.00 0.00 34.60 3.36
300 310 5.408604 TGACTCCGTTAATCTTGAAGCTTTC 59.591 40.000 0.00 0.00 0.00 2.62
325 335 5.176590 CGAGCCTAAAATTCAGTAGATGAGC 59.823 44.000 0.00 0.00 39.68 4.26
329 339 6.042777 CCTAAAATTCAGTAGATGAGCGTGA 58.957 40.000 0.00 0.00 39.68 4.35
397 410 9.636789 AAACAGTTTAGGGTACTTAATTTGTCT 57.363 29.630 0.00 0.00 0.00 3.41
493 506 6.001449 TCCAGCATAAAACTAACCAGCTAT 57.999 37.500 0.00 0.00 0.00 2.97
496 509 7.396055 TCCAGCATAAAACTAACCAGCTATTTT 59.604 33.333 0.00 0.00 0.00 1.82
580 594 3.402628 ACGCTACACCCATCATATTCC 57.597 47.619 0.00 0.00 0.00 3.01
583 597 3.006859 CGCTACACCCATCATATTCCAGA 59.993 47.826 0.00 0.00 0.00 3.86
639 653 5.047377 TGGTAGGATTTGGTTTGATTTGAGC 60.047 40.000 0.00 0.00 0.00 4.26
643 657 5.246656 AGGATTTGGTTTGATTTGAGCATGA 59.753 36.000 0.00 0.00 0.00 3.07
693 735 7.553881 TCTAGTTAATTGAGTTAATGCAGGC 57.446 36.000 0.00 0.00 34.93 4.85
741 783 1.053424 AGTGCCGGGTTTTCACTAGA 58.947 50.000 9.61 0.00 39.08 2.43
742 784 1.002087 AGTGCCGGGTTTTCACTAGAG 59.998 52.381 9.61 0.00 39.08 2.43
784 827 9.801873 ATGATTTGGTTTAGATTATTCCAAACG 57.198 29.630 9.34 0.00 46.23 3.60
798 841 0.679960 CAAACGAATGGGGAGGGACC 60.680 60.000 0.00 0.00 38.08 4.46
841 884 0.609131 ACGCCAACCTCCCTTCAATG 60.609 55.000 0.00 0.00 0.00 2.82
864 909 7.432148 TGGTAGAGATATTTGGCTAGTCAAA 57.568 36.000 23.81 23.81 40.37 2.69
904 949 7.436673 TGAAAATTTGACCTAAAATTCGTGGTG 59.563 33.333 0.00 0.00 38.49 4.17
907 952 5.427036 TTGACCTAAAATTCGTGGTGAAC 57.573 39.130 1.65 0.00 40.00 3.18
921 966 4.862902 TGGTGAACCAATAAACACATGG 57.137 40.909 0.00 0.00 44.35 3.66
933 978 7.256048 CCAATAAACACATGGCAGATGGAATAT 60.256 37.037 0.00 0.00 0.00 1.28
935 980 4.174704 ACACATGGCAGATGGAATATGT 57.825 40.909 0.00 0.00 37.97 2.29
937 982 5.884322 ACACATGGCAGATGGAATATGTAT 58.116 37.500 0.00 0.00 37.97 2.29
939 984 7.460910 ACACATGGCAGATGGAATATGTATTA 58.539 34.615 0.00 0.00 37.97 0.98
940 985 7.609146 ACACATGGCAGATGGAATATGTATTAG 59.391 37.037 0.00 0.00 37.97 1.73
941 986 7.825761 CACATGGCAGATGGAATATGTATTAGA 59.174 37.037 0.00 0.00 37.97 2.10
942 987 7.826252 ACATGGCAGATGGAATATGTATTAGAC 59.174 37.037 0.00 0.00 37.97 2.59
943 988 7.315066 TGGCAGATGGAATATGTATTAGACA 57.685 36.000 0.00 0.00 37.97 3.41
1012 1064 1.274703 TAGCAGCAAAGCCCTAGCCT 61.275 55.000 0.00 0.00 41.25 4.58
1013 1065 1.224592 GCAGCAAAGCCCTAGCCTA 59.775 57.895 0.00 0.00 41.25 3.93
1047 1107 1.245732 AAAAAGGCAGAGCAGAGCAG 58.754 50.000 0.00 0.00 0.00 4.24
1048 1108 0.399454 AAAAGGCAGAGCAGAGCAGA 59.601 50.000 0.00 0.00 0.00 4.26
1049 1109 0.036199 AAAGGCAGAGCAGAGCAGAG 60.036 55.000 0.00 0.00 0.00 3.35
1050 1110 1.901654 AAGGCAGAGCAGAGCAGAGG 61.902 60.000 0.00 0.00 0.00 3.69
1051 1111 2.357575 GGCAGAGCAGAGCAGAGGA 61.358 63.158 0.00 0.00 0.00 3.71
1052 1112 1.142314 GCAGAGCAGAGCAGAGGAG 59.858 63.158 0.00 0.00 0.00 3.69
1053 1113 1.321805 GCAGAGCAGAGCAGAGGAGA 61.322 60.000 0.00 0.00 0.00 3.71
1054 1114 0.742505 CAGAGCAGAGCAGAGGAGAG 59.257 60.000 0.00 0.00 0.00 3.20
1055 1115 1.039233 AGAGCAGAGCAGAGGAGAGC 61.039 60.000 0.00 0.00 0.00 4.09
1056 1116 1.305129 AGCAGAGCAGAGGAGAGCA 60.305 57.895 0.00 0.00 0.00 4.26
1061 1121 2.125753 GCAGAGGAGAGCACACGG 60.126 66.667 0.00 0.00 0.00 4.94
1173 1242 3.680786 CGGCGTCAGTCCAGGACA 61.681 66.667 22.31 0.00 34.60 4.02
1175 1244 2.262915 GCGTCAGTCCAGGACAGG 59.737 66.667 22.31 13.17 34.60 4.00
1176 1245 2.276116 GCGTCAGTCCAGGACAGGA 61.276 63.158 22.31 15.29 34.60 3.86
1177 1246 1.886585 CGTCAGTCCAGGACAGGAG 59.113 63.158 22.31 8.51 38.64 3.69
1178 1247 1.599606 CGTCAGTCCAGGACAGGAGG 61.600 65.000 22.31 18.26 38.64 4.30
1179 1248 1.079256 TCAGTCCAGGACAGGAGGG 59.921 63.158 22.31 4.00 38.64 4.30
1180 1249 1.992277 CAGTCCAGGACAGGAGGGG 60.992 68.421 22.31 0.00 38.64 4.79
1181 1250 3.403558 GTCCAGGACAGGAGGGGC 61.404 72.222 15.43 0.00 38.64 5.80
1199 1268 1.908089 CGCGTTCGATTCGATTCGT 59.092 52.632 24.15 0.00 40.03 3.85
1219 1288 4.570772 TCGTTTCGAGATCAAAATCCCATC 59.429 41.667 0.00 0.00 31.78 3.51
1222 1291 2.146342 CGAGATCAAAATCCCATCCCG 58.854 52.381 0.00 0.00 31.78 5.14
1224 1293 3.744214 CGAGATCAAAATCCCATCCCGAA 60.744 47.826 0.00 0.00 31.78 4.30
1231 1300 3.334891 CCCATCCCGAACCACCCA 61.335 66.667 0.00 0.00 0.00 4.51
1406 1475 3.179265 CAAGACAGGTACGCGCCG 61.179 66.667 5.73 0.00 0.00 6.46
1503 1572 2.940147 GCAGATCAGATGCGTAGTAGG 58.060 52.381 0.00 0.00 33.31 3.18
1505 1574 2.556189 CAGATCAGATGCGTAGTAGGCT 59.444 50.000 15.35 0.00 0.00 4.58
1506 1575 2.556189 AGATCAGATGCGTAGTAGGCTG 59.444 50.000 15.35 6.35 31.88 4.85
1507 1576 1.763968 TCAGATGCGTAGTAGGCTGT 58.236 50.000 15.35 4.93 32.33 4.40
1530 1609 2.771089 TGATCAGTTGAGTCAGTTGCC 58.229 47.619 0.00 0.00 0.00 4.52
1576 1655 2.125753 GCAGAGCGACACCTCCTG 60.126 66.667 0.00 0.00 32.17 3.86
1603 1682 4.511826 CAGTTTAGTCAGTTGAGTTCCCAC 59.488 45.833 0.00 0.00 0.00 4.61
1604 1683 4.409247 AGTTTAGTCAGTTGAGTTCCCACT 59.591 41.667 0.00 0.00 35.17 4.00
1605 1684 5.104485 AGTTTAGTCAGTTGAGTTCCCACTT 60.104 40.000 0.00 0.00 31.22 3.16
1606 1685 3.477210 AGTCAGTTGAGTTCCCACTTC 57.523 47.619 0.00 0.00 31.22 3.01
1607 1686 2.104963 AGTCAGTTGAGTTCCCACTTCC 59.895 50.000 0.00 0.00 31.22 3.46
1608 1687 1.420138 TCAGTTGAGTTCCCACTTCCC 59.580 52.381 0.00 0.00 31.22 3.97
1609 1688 1.142870 CAGTTGAGTTCCCACTTCCCA 59.857 52.381 0.00 0.00 31.22 4.37
1610 1689 1.143073 AGTTGAGTTCCCACTTCCCAC 59.857 52.381 0.00 0.00 31.22 4.61
1633 1712 1.542472 TCACTGCGGAATTCACTCGTA 59.458 47.619 7.93 0.62 0.00 3.43
1674 1753 2.050077 GCGGGACAAAACAGCAGC 60.050 61.111 0.00 0.00 0.00 5.25
1738 1817 9.435688 GGTTTATTCAGGATAAAACTGCAATTT 57.564 29.630 2.22 0.00 42.25 1.82
1771 1850 9.778741 TGAACAGAGAATTTCATACTTAACAGT 57.221 29.630 0.00 0.00 36.99 3.55
1784 1867 5.995565 ACTTAACAGTACAGTCATAGCCA 57.004 39.130 0.00 0.00 0.00 4.75
1821 1905 9.987726 ATAATTTTCTTCTTCATCTTTCCCTCT 57.012 29.630 0.00 0.00 0.00 3.69
1823 1907 5.428184 TTCTTCTTCATCTTTCCCTCTCC 57.572 43.478 0.00 0.00 0.00 3.71
1824 1908 4.693420 TCTTCTTCATCTTTCCCTCTCCT 58.307 43.478 0.00 0.00 0.00 3.69
1902 1986 8.033038 TCAGTCTGCGTAATTAGTCAGTTTATT 58.967 33.333 11.50 0.00 0.00 1.40
1903 1987 9.297586 CAGTCTGCGTAATTAGTCAGTTTATTA 57.702 33.333 11.50 0.00 0.00 0.98
1948 2032 4.005650 TGAATCCTGCAGCTGTTTTCTAG 58.994 43.478 16.64 4.66 0.00 2.43
1952 2036 3.578716 TCCTGCAGCTGTTTTCTAGTACT 59.421 43.478 16.64 0.00 0.00 2.73
1953 2037 4.770531 TCCTGCAGCTGTTTTCTAGTACTA 59.229 41.667 16.64 1.89 0.00 1.82
1954 2038 4.865365 CCTGCAGCTGTTTTCTAGTACTAC 59.135 45.833 16.64 0.00 0.00 2.73
1957 2041 5.010719 TGCAGCTGTTTTCTAGTACTACAGT 59.989 40.000 16.64 7.78 38.70 3.55
1961 2045 7.751348 CAGCTGTTTTCTAGTACTACAGTAGTG 59.249 40.741 21.71 12.67 39.81 2.74
1964 2048 7.879070 TGTTTTCTAGTACTACAGTAGTGGTG 58.121 38.462 21.71 10.04 39.97 4.17
2028 2112 1.813753 CCCTACGGCATTGACCACG 60.814 63.158 0.00 0.00 0.00 4.94
2046 2130 4.151157 ACCACGCTCGTCAGTTTAATTTAC 59.849 41.667 0.00 0.00 0.00 2.01
2047 2131 4.387862 CCACGCTCGTCAGTTTAATTTACT 59.612 41.667 0.00 0.00 0.00 2.24
2048 2132 5.305812 CACGCTCGTCAGTTTAATTTACTG 58.694 41.667 12.00 12.00 43.41 2.74
2146 2242 1.205893 CAGTCTAGAAGCCACACCTCC 59.794 57.143 0.00 0.00 0.00 4.30
2294 2396 4.067192 ACCCATGCTGAAAATTTCTTTGC 58.933 39.130 7.29 9.05 0.00 3.68
2296 2398 4.153475 CCCATGCTGAAAATTTCTTTGCAG 59.847 41.667 19.20 8.98 46.84 4.41
2374 2502 1.144565 CGAGACTGAATGCTCTGCCG 61.145 60.000 0.00 0.00 0.00 5.69
2545 2673 3.057736 CGGTACCGTCCATATTCAGTAGG 60.058 52.174 26.39 0.00 34.35 3.18
2546 2674 3.305881 GGTACCGTCCATATTCAGTAGGC 60.306 52.174 0.00 0.00 0.00 3.93
2547 2675 1.340248 ACCGTCCATATTCAGTAGGCG 59.660 52.381 0.00 0.00 0.00 5.52
2548 2676 1.419374 CGTCCATATTCAGTAGGCGC 58.581 55.000 0.00 0.00 0.00 6.53
2578 2706 4.681978 GTCGTGGGCCTGCTCGTT 62.682 66.667 4.53 0.00 0.00 3.85
2628 2757 5.333798 CCGCACGGTTAATAATTACTGATGG 60.334 44.000 0.00 0.00 0.00 3.51
2688 2817 5.784177 ACACCGTGCAAATCTATCTATAGG 58.216 41.667 0.00 0.00 0.00 2.57
2708 2837 3.908103 AGGGAGAAAAAGTGGTAGCAGTA 59.092 43.478 1.99 0.00 0.00 2.74
2726 2855 1.070134 GTACTGCTTGTGGTGTCCTCA 59.930 52.381 0.00 0.00 0.00 3.86
2751 2882 2.338785 GCAGCTTCCCTTGTCTGGC 61.339 63.158 0.00 0.00 0.00 4.85
2752 2883 1.377994 CAGCTTCCCTTGTCTGGCT 59.622 57.895 0.00 0.00 0.00 4.75
2753 2884 0.959372 CAGCTTCCCTTGTCTGGCTG 60.959 60.000 0.00 0.00 40.52 4.85
2766 2897 2.497675 GTCTGGCTGTGGTCTTGAGATA 59.502 50.000 0.00 0.00 0.00 1.98
2871 3026 1.869690 GGTGCGCAAGGTTCTCTTC 59.130 57.895 14.00 0.00 32.41 2.87
2895 3050 4.455606 GGTCATCAGGAGGTTTTCTATGG 58.544 47.826 0.00 0.00 0.00 2.74
2909 3066 6.206634 GGTTTTCTATGGAAATGTGACACTCA 59.793 38.462 4.96 0.00 40.57 3.41
2964 3143 6.326375 CAACTTGTCTAGAACTCGAGCTTAT 58.674 40.000 13.61 6.25 0.00 1.73
2965 3144 5.885881 ACTTGTCTAGAACTCGAGCTTATG 58.114 41.667 13.61 0.44 0.00 1.90
2966 3145 4.902443 TGTCTAGAACTCGAGCTTATGG 57.098 45.455 13.61 5.94 0.00 2.74
2967 3146 4.270834 TGTCTAGAACTCGAGCTTATGGT 58.729 43.478 13.61 0.00 0.00 3.55
3037 3221 0.869880 TCGTAGGCGCAATGATCGTG 60.870 55.000 10.83 0.00 38.14 4.35
3195 3386 1.102978 GGCGATGGCAACCTTTACAT 58.897 50.000 1.01 0.00 42.47 2.29
3249 3440 0.106419 TCTTTTTGTCCCCAGCCGTT 60.106 50.000 0.00 0.00 0.00 4.44
3294 3485 4.450976 GTCACTCACCATGGTATGCATTA 58.549 43.478 19.28 0.00 0.00 1.90
3382 3573 1.076995 GGCTGGGAATAAAGGGCGT 60.077 57.895 0.00 0.00 0.00 5.68
3383 3574 0.181824 GGCTGGGAATAAAGGGCGTA 59.818 55.000 0.00 0.00 0.00 4.42
3384 3575 1.306148 GCTGGGAATAAAGGGCGTAC 58.694 55.000 0.00 0.00 0.00 3.67
3385 3576 1.134189 GCTGGGAATAAAGGGCGTACT 60.134 52.381 0.00 0.00 0.00 2.73
3386 3577 2.103601 GCTGGGAATAAAGGGCGTACTA 59.896 50.000 0.00 0.00 0.00 1.82
3399 3590 8.888579 AAAGGGCGTACTATATATATTCATGC 57.111 34.615 0.00 4.04 0.00 4.06
3425 3616 0.948678 TGCGCCTTTGTGGTAAAGTC 59.051 50.000 4.18 0.00 38.35 3.01
3438 3629 5.840149 TGTGGTAAAGTCTTAGGTAGTGGAA 59.160 40.000 0.00 0.00 0.00 3.53
3475 3666 2.047179 GTGGTGAGAACCCGAGGC 60.047 66.667 0.00 0.00 0.00 4.70
3493 3684 0.393808 GCGGGGAATGTTCTTGGCTA 60.394 55.000 0.00 0.00 0.00 3.93
3494 3685 1.668419 CGGGGAATGTTCTTGGCTAG 58.332 55.000 0.00 0.00 0.00 3.42
3495 3686 1.393603 GGGGAATGTTCTTGGCTAGC 58.606 55.000 6.04 6.04 0.00 3.42
3496 3687 1.064389 GGGGAATGTTCTTGGCTAGCT 60.064 52.381 15.72 0.00 0.00 3.32
3645 3836 3.721706 GCTGGGGGTGAGGTGAGG 61.722 72.222 0.00 0.00 0.00 3.86
3646 3837 3.011517 CTGGGGGTGAGGTGAGGG 61.012 72.222 0.00 0.00 0.00 4.30
3648 3839 2.453054 GGGGGTGAGGTGAGGGTA 59.547 66.667 0.00 0.00 0.00 3.69
3649 3840 1.689582 GGGGGTGAGGTGAGGGTAG 60.690 68.421 0.00 0.00 0.00 3.18
3650 3841 1.390926 GGGGTGAGGTGAGGGTAGA 59.609 63.158 0.00 0.00 0.00 2.59
3652 3843 1.196012 GGGTGAGGTGAGGGTAGAAG 58.804 60.000 0.00 0.00 0.00 2.85
3653 3844 1.273098 GGGTGAGGTGAGGGTAGAAGA 60.273 57.143 0.00 0.00 0.00 2.87
3654 3845 2.537143 GGTGAGGTGAGGGTAGAAGAA 58.463 52.381 0.00 0.00 0.00 2.52
3657 3848 4.902448 GGTGAGGTGAGGGTAGAAGAATAT 59.098 45.833 0.00 0.00 0.00 1.28
3658 3849 5.011227 GGTGAGGTGAGGGTAGAAGAATATC 59.989 48.000 0.00 0.00 0.00 1.63
3659 3850 4.827835 TGAGGTGAGGGTAGAAGAATATCG 59.172 45.833 0.00 0.00 0.00 2.92
3660 3851 5.063017 AGGTGAGGGTAGAAGAATATCGA 57.937 43.478 0.00 0.00 0.00 3.59
3661 3852 5.455872 AGGTGAGGGTAGAAGAATATCGAA 58.544 41.667 0.00 0.00 0.00 3.71
3662 3853 6.078664 AGGTGAGGGTAGAAGAATATCGAAT 58.921 40.000 0.00 0.00 0.00 3.34
3724 3920 1.312815 AGCTTCTGGTGTTTCTGTGC 58.687 50.000 0.00 0.00 0.00 4.57
3737 3938 0.451383 TCTGTGCGTGCCAATAATGC 59.549 50.000 0.00 0.00 0.00 3.56
3739 3940 0.170784 TGTGCGTGCCAATAATGCTG 59.829 50.000 0.00 0.00 0.00 4.41
3743 3944 1.898938 CGTGCCAATAATGCTGTGTG 58.101 50.000 0.00 0.00 0.00 3.82
3761 3962 4.095610 GTGTGTGCTGTTGTGTTCTTTAC 58.904 43.478 0.00 0.00 0.00 2.01
3785 3986 1.680338 CCCGCCCTTTTTATCCAGAG 58.320 55.000 0.00 0.00 0.00 3.35
3794 3995 7.363443 CGCCCTTTTTATCCAGAGGAATAAAAA 60.363 37.037 16.29 16.29 35.29 1.94
3825 4026 2.102588 ACTCGGCAGCTTCGGTTATATT 59.897 45.455 6.41 0.00 0.00 1.28
3860 4061 6.405842 GGAAGTGGAAGCCCATTATTGTTTAG 60.406 42.308 0.00 0.00 45.68 1.85
3988 4191 1.002857 AGGAAAGGAATGGACCTGGG 58.997 55.000 0.00 0.00 40.49 4.45
4044 4247 2.115911 TTCGCCGTTTGTGCAAGGT 61.116 52.632 0.00 0.00 0.00 3.50
4068 4271 7.546316 GGTAAAAGTGAAGTAGGAGATGTTCTC 59.454 40.741 0.00 0.00 42.66 2.87
4110 4336 8.545984 GCCAGTAGGAGATGATGACATCAAAAA 61.546 40.741 21.52 0.00 44.03 1.94
4215 4455 4.082463 TGCCGTTCAAAGAAAAAGTCACTT 60.082 37.500 0.00 0.00 0.00 3.16
4261 4503 4.105754 AGTGGGAAAGAAAGGAGAAAGG 57.894 45.455 0.00 0.00 0.00 3.11
4300 4547 4.263462 ACAAGCTGAGGTGTCATTATTCCA 60.263 41.667 0.00 0.00 30.18 3.53
4349 4625 1.591594 CACGAGTGGCAACGAGTGT 60.592 57.895 19.14 0.00 42.51 3.55
4713 4989 1.584380 GGTGCAGAAGAAGCCAGCAG 61.584 60.000 0.00 0.00 35.66 4.24
4904 5180 1.929836 GTGATGTTCGAGATGCTGACC 59.070 52.381 0.00 0.00 0.00 4.02
5022 5298 4.208686 CGGCGCAGTAGAGACCCC 62.209 72.222 10.83 0.00 0.00 4.95
5025 5301 2.799371 CGCAGTAGAGACCCCGAC 59.201 66.667 0.00 0.00 0.00 4.79
5027 5303 2.799371 CAGTAGAGACCCCGACGC 59.201 66.667 0.00 0.00 0.00 5.19
5054 5336 1.448985 GAATGCAGCTCGGTTTGGTA 58.551 50.000 0.00 0.00 0.00 3.25
5106 5388 4.056740 GAGGGCCGATTTAGTAAGTAAGC 58.943 47.826 0.00 0.00 0.00 3.09
5110 5392 4.260661 GGCCGATTTAGTAAGTAAGCAAGC 60.261 45.833 0.00 0.00 0.00 4.01
5177 5459 4.783621 TGCCAGGCACCGATCAGC 62.784 66.667 11.22 0.00 31.71 4.26
5178 5460 4.783621 GCCAGGCACCGATCAGCA 62.784 66.667 6.55 0.00 0.00 4.41
5179 5461 2.821366 CCAGGCACCGATCAGCAC 60.821 66.667 0.00 0.00 0.00 4.40
5224 5507 0.321298 CCGGGAAAAAGAGCGAGGAA 60.321 55.000 0.00 0.00 0.00 3.36
5241 5524 1.135575 GGAATTCAGTTTGCAGAGCGG 60.136 52.381 7.93 0.00 0.00 5.52
5282 5565 7.426929 AGTCTGAATGTTTTCTGTACATGTC 57.573 36.000 0.00 0.00 36.41 3.06
5288 5571 3.163594 GTTTTCTGTACATGTCGCATGC 58.836 45.455 7.91 7.91 0.00 4.06
5321 5605 0.109086 TTCTCGCAAGCTCGGAGAAG 60.109 55.000 9.69 0.00 34.09 2.85
5368 5652 9.367160 ACTTTTCAATCAACCATATATAAGGGG 57.633 33.333 8.79 3.41 0.00 4.79
5369 5653 9.367160 CTTTTCAATCAACCATATATAAGGGGT 57.633 33.333 8.79 4.00 34.43 4.95
5370 5654 8.934023 TTTCAATCAACCATATATAAGGGGTC 57.066 34.615 8.79 0.00 32.01 4.46
5371 5655 6.707290 TCAATCAACCATATATAAGGGGTCG 58.293 40.000 8.79 0.00 32.01 4.79
5372 5656 6.271391 TCAATCAACCATATATAAGGGGTCGT 59.729 38.462 8.79 0.00 32.01 4.34
5373 5657 6.697641 ATCAACCATATATAAGGGGTCGTT 57.302 37.500 8.79 0.00 32.01 3.85
5374 5658 6.105397 TCAACCATATATAAGGGGTCGTTC 57.895 41.667 8.79 0.00 32.01 3.95
5375 5659 4.796038 ACCATATATAAGGGGTCGTTCG 57.204 45.455 8.79 0.00 0.00 3.95
5376 5660 3.512724 ACCATATATAAGGGGTCGTTCGG 59.487 47.826 8.79 0.00 0.00 4.30
5377 5661 3.512724 CCATATATAAGGGGTCGTTCGGT 59.487 47.826 0.00 0.00 0.00 4.69
5378 5662 4.706476 CCATATATAAGGGGTCGTTCGGTA 59.294 45.833 0.00 0.00 0.00 4.02
5379 5663 5.163581 CCATATATAAGGGGTCGTTCGGTAG 60.164 48.000 0.00 0.00 0.00 3.18
5380 5664 2.149973 ATAAGGGGTCGTTCGGTAGT 57.850 50.000 0.00 0.00 0.00 2.73
5381 5665 1.463674 TAAGGGGTCGTTCGGTAGTC 58.536 55.000 0.00 0.00 0.00 2.59
5382 5666 1.253593 AAGGGGTCGTTCGGTAGTCC 61.254 60.000 0.00 0.00 0.00 3.85
5383 5667 1.978617 GGGGTCGTTCGGTAGTCCA 60.979 63.158 0.00 0.00 0.00 4.02
5384 5668 1.213799 GGGTCGTTCGGTAGTCCAC 59.786 63.158 0.00 0.00 0.00 4.02
5385 5669 1.213799 GGTCGTTCGGTAGTCCACC 59.786 63.158 0.00 0.00 44.75 4.61
5386 5670 1.213799 GTCGTTCGGTAGTCCACCC 59.786 63.158 0.00 0.00 45.52 4.61
5387 5671 2.180017 CGTTCGGTAGTCCACCCG 59.820 66.667 0.00 0.00 45.52 5.28
5388 5672 2.125793 GTTCGGTAGTCCACCCGC 60.126 66.667 0.00 0.00 45.52 6.13
5389 5673 2.283388 TTCGGTAGTCCACCCGCT 60.283 61.111 0.00 0.00 45.52 5.52
5390 5674 2.345760 TTCGGTAGTCCACCCGCTC 61.346 63.158 0.00 0.00 45.52 5.03
5391 5675 3.834799 CGGTAGTCCACCCGCTCC 61.835 72.222 0.00 0.00 45.52 4.70
5392 5676 3.834799 GGTAGTCCACCCGCTCCG 61.835 72.222 0.00 0.00 42.07 4.63
5393 5677 4.509737 GTAGTCCACCCGCTCCGC 62.510 72.222 0.00 0.00 0.00 5.54
5398 5682 3.849951 CCACCCGCTCCGCAGTAT 61.850 66.667 0.00 0.00 0.00 2.12
5399 5683 2.186903 CACCCGCTCCGCAGTATT 59.813 61.111 0.00 0.00 0.00 1.89
5400 5684 1.449601 CACCCGCTCCGCAGTATTT 60.450 57.895 0.00 0.00 0.00 1.40
5401 5685 1.024579 CACCCGCTCCGCAGTATTTT 61.025 55.000 0.00 0.00 0.00 1.82
5402 5686 0.538118 ACCCGCTCCGCAGTATTTTA 59.462 50.000 0.00 0.00 0.00 1.52
5403 5687 1.217882 CCCGCTCCGCAGTATTTTAG 58.782 55.000 0.00 0.00 0.00 1.85
5404 5688 1.202486 CCCGCTCCGCAGTATTTTAGA 60.202 52.381 0.00 0.00 0.00 2.10
5405 5689 2.546778 CCGCTCCGCAGTATTTTAGAA 58.453 47.619 0.00 0.00 0.00 2.10
5406 5690 3.131396 CCGCTCCGCAGTATTTTAGAAT 58.869 45.455 0.00 0.00 0.00 2.40
5407 5691 3.184581 CCGCTCCGCAGTATTTTAGAATC 59.815 47.826 0.00 0.00 0.00 2.52
5408 5692 4.051922 CGCTCCGCAGTATTTTAGAATCT 58.948 43.478 0.00 0.00 0.00 2.40
5409 5693 4.084849 CGCTCCGCAGTATTTTAGAATCTG 60.085 45.833 0.00 0.00 0.00 2.90
5410 5694 4.319118 GCTCCGCAGTATTTTAGAATCTGC 60.319 45.833 14.77 14.77 39.87 4.26
5411 5695 4.765273 TCCGCAGTATTTTAGAATCTGCA 58.235 39.130 20.12 0.00 41.39 4.41
5412 5696 4.811024 TCCGCAGTATTTTAGAATCTGCAG 59.189 41.667 20.12 7.63 41.39 4.41
5413 5697 4.811024 CCGCAGTATTTTAGAATCTGCAGA 59.189 41.667 20.79 20.79 41.39 4.26
5414 5698 5.050499 CCGCAGTATTTTAGAATCTGCAGAG 60.050 44.000 22.96 4.50 41.39 3.35
5415 5699 5.521735 CGCAGTATTTTAGAATCTGCAGAGT 59.478 40.000 22.96 20.63 41.39 3.24
5416 5700 6.697455 CGCAGTATTTTAGAATCTGCAGAGTA 59.303 38.462 22.96 10.55 41.39 2.59
5417 5701 7.306283 CGCAGTATTTTAGAATCTGCAGAGTAC 60.306 40.741 22.96 12.30 41.39 2.73
5418 5702 7.042389 GCAGTATTTTAGAATCTGCAGAGTACC 60.042 40.741 22.96 8.67 41.21 3.34
5419 5703 7.168302 CAGTATTTTAGAATCTGCAGAGTACCG 59.832 40.741 22.96 1.31 0.00 4.02
5420 5704 5.401531 TTTTAGAATCTGCAGAGTACCGT 57.598 39.130 22.96 7.70 0.00 4.83
5421 5705 5.401531 TTTAGAATCTGCAGAGTACCGTT 57.598 39.130 22.96 10.19 0.00 4.44
5422 5706 3.963428 AGAATCTGCAGAGTACCGTTT 57.037 42.857 22.96 9.41 0.00 3.60
5423 5707 3.851098 AGAATCTGCAGAGTACCGTTTC 58.149 45.455 22.96 17.58 0.00 2.78
5424 5708 3.511934 AGAATCTGCAGAGTACCGTTTCT 59.488 43.478 22.96 19.45 0.00 2.52
5425 5709 3.512033 ATCTGCAGAGTACCGTTTCTC 57.488 47.619 22.96 0.00 0.00 2.87
5426 5710 2.515854 TCTGCAGAGTACCGTTTCTCT 58.484 47.619 13.74 0.00 41.04 3.10
5427 5711 2.488545 TCTGCAGAGTACCGTTTCTCTC 59.511 50.000 13.74 0.00 38.74 3.20
5428 5712 1.199327 TGCAGAGTACCGTTTCTCTCG 59.801 52.381 0.00 0.00 38.74 4.04
5429 5713 1.897641 CAGAGTACCGTTTCTCTCGC 58.102 55.000 0.00 0.00 38.74 5.03
5430 5714 1.469308 CAGAGTACCGTTTCTCTCGCT 59.531 52.381 0.00 0.00 38.74 4.93
5431 5715 1.738908 AGAGTACCGTTTCTCTCGCTC 59.261 52.381 0.00 0.00 36.45 5.03
5432 5716 0.810016 AGTACCGTTTCTCTCGCTCC 59.190 55.000 0.00 0.00 0.00 4.70
5433 5717 0.522915 GTACCGTTTCTCTCGCTCCG 60.523 60.000 0.00 0.00 0.00 4.63
5434 5718 0.957395 TACCGTTTCTCTCGCTCCGT 60.957 55.000 0.00 0.00 0.00 4.69
5435 5719 0.957395 ACCGTTTCTCTCGCTCCGTA 60.957 55.000 0.00 0.00 0.00 4.02
5436 5720 0.522915 CCGTTTCTCTCGCTCCGTAC 60.523 60.000 0.00 0.00 0.00 3.67
5437 5721 0.447011 CGTTTCTCTCGCTCCGTACT 59.553 55.000 0.00 0.00 0.00 2.73
5438 5722 1.135746 CGTTTCTCTCGCTCCGTACTT 60.136 52.381 0.00 0.00 0.00 2.24
5439 5723 2.667724 CGTTTCTCTCGCTCCGTACTTT 60.668 50.000 0.00 0.00 0.00 2.66
5440 5724 3.315418 GTTTCTCTCGCTCCGTACTTTT 58.685 45.455 0.00 0.00 0.00 2.27
5441 5725 3.655276 TTCTCTCGCTCCGTACTTTTT 57.345 42.857 0.00 0.00 0.00 1.94
5442 5726 4.771590 TTCTCTCGCTCCGTACTTTTTA 57.228 40.909 0.00 0.00 0.00 1.52
5443 5727 4.771590 TCTCTCGCTCCGTACTTTTTAA 57.228 40.909 0.00 0.00 0.00 1.52
5444 5728 4.479619 TCTCTCGCTCCGTACTTTTTAAC 58.520 43.478 0.00 0.00 0.00 2.01
5445 5729 4.217118 TCTCTCGCTCCGTACTTTTTAACT 59.783 41.667 0.00 0.00 0.00 2.24
5446 5730 5.412594 TCTCTCGCTCCGTACTTTTTAACTA 59.587 40.000 0.00 0.00 0.00 2.24
5447 5731 5.393962 TCTCGCTCCGTACTTTTTAACTAC 58.606 41.667 0.00 0.00 0.00 2.73
5448 5732 5.048782 TCTCGCTCCGTACTTTTTAACTACA 60.049 40.000 0.00 0.00 0.00 2.74
5449 5733 5.527951 TCGCTCCGTACTTTTTAACTACAA 58.472 37.500 0.00 0.00 0.00 2.41
5450 5734 5.402270 TCGCTCCGTACTTTTTAACTACAAC 59.598 40.000 0.00 0.00 0.00 3.32
5451 5735 5.403466 CGCTCCGTACTTTTTAACTACAACT 59.597 40.000 0.00 0.00 0.00 3.16
5452 5736 6.399354 CGCTCCGTACTTTTTAACTACAACTC 60.399 42.308 0.00 0.00 0.00 3.01
5453 5737 6.128715 GCTCCGTACTTTTTAACTACAACTCC 60.129 42.308 0.00 0.00 0.00 3.85
5454 5738 6.223120 TCCGTACTTTTTAACTACAACTCCC 58.777 40.000 0.00 0.00 0.00 4.30
5455 5739 5.119125 CCGTACTTTTTAACTACAACTCCCG 59.881 44.000 0.00 0.00 0.00 5.14
5456 5740 5.691754 CGTACTTTTTAACTACAACTCCCGT 59.308 40.000 0.00 0.00 0.00 5.28
5457 5741 6.129088 CGTACTTTTTAACTACAACTCCCGTC 60.129 42.308 0.00 0.00 0.00 4.79
5458 5742 4.746611 ACTTTTTAACTACAACTCCCGTCG 59.253 41.667 0.00 0.00 0.00 5.12
5459 5743 4.582701 TTTTAACTACAACTCCCGTCGA 57.417 40.909 0.00 0.00 0.00 4.20
5460 5744 3.559238 TTAACTACAACTCCCGTCGAC 57.441 47.619 5.18 5.18 0.00 4.20
5461 5745 1.613836 AACTACAACTCCCGTCGACT 58.386 50.000 14.70 0.00 0.00 4.18
5462 5746 1.163554 ACTACAACTCCCGTCGACTC 58.836 55.000 14.70 0.00 0.00 3.36
5463 5747 0.450983 CTACAACTCCCGTCGACTCC 59.549 60.000 14.70 0.00 0.00 3.85
5464 5748 1.300971 TACAACTCCCGTCGACTCCG 61.301 60.000 14.70 0.00 37.07 4.63
5465 5749 3.060615 AACTCCCGTCGACTCCGG 61.061 66.667 14.70 10.07 45.07 5.14
5500 5784 3.787001 GGAGGCCCTCCGAACAGG 61.787 72.222 15.55 0.00 41.08 4.00
5501 5785 4.475135 GAGGCCCTCCGAACAGGC 62.475 72.222 0.00 0.00 46.37 4.85
5519 5803 2.107726 AGGCCCTAAATATCCGGTTTCC 59.892 50.000 0.00 0.00 0.00 3.13
5536 5820 4.250464 GTTTCCCTGTCGTTCATATGTCA 58.750 43.478 1.90 0.00 0.00 3.58
5540 5824 5.496556 TCCCTGTCGTTCATATGTCATTTT 58.503 37.500 1.90 0.00 0.00 1.82
5541 5825 5.353956 TCCCTGTCGTTCATATGTCATTTTG 59.646 40.000 1.90 0.00 0.00 2.44
5603 5887 2.969055 CGAATTTCGGTATTCGCCTTG 58.031 47.619 10.95 0.00 46.88 3.61
5627 5914 5.392380 GCTCATTTCTTGGTGTTATCTGGTG 60.392 44.000 0.00 0.00 0.00 4.17
5871 6158 6.019748 TCTCCCTTTTAATGGTGCCATTTTA 58.980 36.000 19.99 7.80 43.32 1.52
5872 6159 6.671779 TCTCCCTTTTAATGGTGCCATTTTAT 59.328 34.615 19.99 0.48 43.32 1.40
5873 6160 7.841729 TCTCCCTTTTAATGGTGCCATTTTATA 59.158 33.333 19.99 1.33 43.32 0.98
5874 6161 8.017418 TCCCTTTTAATGGTGCCATTTTATAG 57.983 34.615 19.99 12.75 43.32 1.31
5928 6215 1.032014 TTGTTTGGCACCAGCTTCTC 58.968 50.000 0.00 0.00 41.70 2.87
5950 6237 5.809001 TCTTTTCTGTTCAGCCATGACTAT 58.191 37.500 0.00 0.00 34.35 2.12
5976 6263 2.483013 GGGTTTGGCAGAAGTGGTTTTC 60.483 50.000 0.00 0.00 0.00 2.29
6018 6305 3.544684 ACGATGCAATTCAGGCAAGATA 58.455 40.909 0.00 0.00 45.60 1.98
6019 6306 3.313526 ACGATGCAATTCAGGCAAGATAC 59.686 43.478 0.00 0.00 45.60 2.24
6021 6308 4.751600 CGATGCAATTCAGGCAAGATACTA 59.248 41.667 0.00 0.00 45.60 1.82
6025 6312 4.274459 GCAATTCAGGCAAGATACTACCAG 59.726 45.833 0.00 0.00 0.00 4.00
6026 6313 5.674525 CAATTCAGGCAAGATACTACCAGA 58.325 41.667 0.00 0.00 0.00 3.86
6027 6314 6.294473 CAATTCAGGCAAGATACTACCAGAT 58.706 40.000 0.00 0.00 0.00 2.90
6028 6315 5.957771 TTCAGGCAAGATACTACCAGATT 57.042 39.130 0.00 0.00 0.00 2.40
6029 6316 5.957771 TCAGGCAAGATACTACCAGATTT 57.042 39.130 0.00 0.00 0.00 2.17
6030 6317 7.432148 TTCAGGCAAGATACTACCAGATTTA 57.568 36.000 0.00 0.00 0.00 1.40
6031 6318 6.817184 TCAGGCAAGATACTACCAGATTTAC 58.183 40.000 0.00 0.00 0.00 2.01
6032 6319 6.611642 TCAGGCAAGATACTACCAGATTTACT 59.388 38.462 0.00 0.00 0.00 2.24
6033 6320 6.926272 CAGGCAAGATACTACCAGATTTACTC 59.074 42.308 0.00 0.00 0.00 2.59
6034 6321 6.611642 AGGCAAGATACTACCAGATTTACTCA 59.388 38.462 0.00 0.00 0.00 3.41
6035 6322 7.125811 AGGCAAGATACTACCAGATTTACTCAA 59.874 37.037 0.00 0.00 0.00 3.02
6036 6323 7.769044 GGCAAGATACTACCAGATTTACTCAAA 59.231 37.037 0.00 0.00 0.00 2.69
6037 6324 8.604890 GCAAGATACTACCAGATTTACTCAAAC 58.395 37.037 0.00 0.00 0.00 2.93
6038 6325 9.877178 CAAGATACTACCAGATTTACTCAAACT 57.123 33.333 0.00 0.00 0.00 2.66
6039 6326 9.877178 AAGATACTACCAGATTTACTCAAACTG 57.123 33.333 0.00 0.00 0.00 3.16
6061 6348 2.046314 CAACTCCAACGGGCCGAT 60.046 61.111 35.78 20.37 0.00 4.18
6270 6564 1.964373 ACGAATGCCGGCGAAAGTT 60.964 52.632 23.90 11.17 43.93 2.66
6351 6645 4.819761 GGCGGCGTCTGCATCAGA 62.820 66.667 9.37 0.00 45.35 3.27
6495 6791 0.038251 TCGAACATCTGCAGACGCTT 60.038 50.000 20.97 10.31 39.64 4.68
6558 6854 2.764547 GAGGTAGGCCGCCTCCTT 60.765 66.667 28.49 8.86 45.05 3.36
6586 6882 3.620785 GCCCCGAGCCAGATCGAT 61.621 66.667 6.92 0.00 45.56 3.59
6588 6884 2.356793 CCCGAGCCAGATCGATGC 60.357 66.667 0.54 0.00 45.56 3.91
6783 7079 2.506061 CCCTCCATCGCTCCTCCTG 61.506 68.421 0.00 0.00 0.00 3.86
6913 7210 1.519246 CCTCGCCTTCTCATGCTCA 59.481 57.895 0.00 0.00 0.00 4.26
6922 7219 2.408271 TCTCATGCTCAAAGGCGAAT 57.592 45.000 0.00 0.00 34.52 3.34
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.202758 TCAAAGTGTGCTAGGGTGTGG 60.203 52.381 0.00 0.00 0.00 4.17
60 61 3.420482 CCACCCTCCCCATGACCC 61.420 72.222 0.00 0.00 0.00 4.46
78 79 5.542251 TGATTATACATTGATCCGTCTCCCA 59.458 40.000 0.00 0.00 0.00 4.37
102 111 7.148306 GGAGATTTCAACACGTGGTACAATTAT 60.148 37.037 21.57 7.71 44.16 1.28
103 112 6.148150 GGAGATTTCAACACGTGGTACAATTA 59.852 38.462 21.57 0.00 44.16 1.40
104 113 5.048991 GGAGATTTCAACACGTGGTACAATT 60.049 40.000 21.57 6.06 44.16 2.32
105 114 4.454504 GGAGATTTCAACACGTGGTACAAT 59.545 41.667 21.57 14.40 44.16 2.71
106 115 3.810941 GGAGATTTCAACACGTGGTACAA 59.189 43.478 21.57 9.83 44.16 2.41
107 116 3.395639 GGAGATTTCAACACGTGGTACA 58.604 45.455 21.57 0.00 0.00 2.90
115 125 6.867293 ACTCTAAACTACGGAGATTTCAACAC 59.133 38.462 0.00 0.00 0.00 3.32
128 138 4.436242 TCTTGAGCCACTCTAAACTACG 57.564 45.455 0.00 0.00 0.00 3.51
208 218 2.042686 AGGCGCTTTAATGAGATGCA 57.957 45.000 7.64 0.00 0.00 3.96
243 253 9.206690 AGATCATTCCACCGACTATAATATCAT 57.793 33.333 0.00 0.00 0.00 2.45
258 268 5.463724 GGAGTCACGATAAAGATCATTCCAC 59.536 44.000 0.00 0.00 31.78 4.02
260 270 4.681942 CGGAGTCACGATAAAGATCATTCC 59.318 45.833 0.00 0.00 35.47 3.01
262 272 5.263968 ACGGAGTCACGATAAAGATCATT 57.736 39.130 7.83 0.00 29.74 2.57
281 291 3.682858 TCGGAAAGCTTCAAGATTAACGG 59.317 43.478 0.00 3.74 0.00 4.44
300 310 5.601662 TCATCTACTGAATTTTAGGCTCGG 58.398 41.667 0.00 0.00 0.00 4.63
310 320 3.452474 GCTCACGCTCATCTACTGAATT 58.548 45.455 0.00 0.00 32.14 2.17
325 335 2.800881 TAGATGCACATAGGCTCACG 57.199 50.000 0.00 0.00 34.04 4.35
329 339 6.119240 ACATAACATAGATGCACATAGGCT 57.881 37.500 0.00 0.00 34.04 4.58
412 425 6.051717 CAGAGTTTGATCCGAAATATGAGGT 58.948 40.000 0.00 0.00 0.00 3.85
416 429 5.817296 TGGTCAGAGTTTGATCCGAAATATG 59.183 40.000 0.00 0.00 35.98 1.78
423 436 2.093500 TCCATGGTCAGAGTTTGATCCG 60.093 50.000 12.58 0.00 35.98 4.18
496 509 0.179161 CCCGTTTGCAACACACGAAA 60.179 50.000 20.64 0.00 39.48 3.46
498 511 2.473760 CCCCGTTTGCAACACACGA 61.474 57.895 20.64 0.00 39.48 4.35
500 513 2.415426 CCCCCGTTTGCAACACAC 59.585 61.111 0.00 0.00 0.00 3.82
513 526 5.193099 ACCATTAGAATATGTATGCCCCC 57.807 43.478 0.00 0.00 0.00 5.40
620 634 5.481105 TCATGCTCAAATCAAACCAAATCC 58.519 37.500 0.00 0.00 0.00 3.01
627 641 5.877012 TCTCCTACTCATGCTCAAATCAAAC 59.123 40.000 0.00 0.00 0.00 2.93
639 653 9.442047 AATTTTACTTGTCTTCTCCTACTCATG 57.558 33.333 0.00 0.00 0.00 3.07
723 765 1.270678 ACTCTAGTGAAAACCCGGCAC 60.271 52.381 0.00 0.00 0.00 5.01
741 783 9.143155 ACCAAATCATGTTTTTCTTACCTTACT 57.857 29.630 0.00 0.00 0.00 2.24
742 784 9.758651 AACCAAATCATGTTTTTCTTACCTTAC 57.241 29.630 0.00 0.00 0.00 2.34
784 827 0.324368 GGTTTGGTCCCTCCCCATTC 60.324 60.000 0.00 0.00 34.77 2.67
787 830 3.253838 CGGTTTGGTCCCTCCCCA 61.254 66.667 0.00 0.00 34.77 4.96
798 841 0.030101 ACGTCACCAAATGCGGTTTG 59.970 50.000 7.26 7.26 45.44 2.93
820 863 0.821711 TTGAAGGGAGGTTGGCGTTG 60.822 55.000 0.00 0.00 0.00 4.10
830 873 6.939163 CCAAATATCTCTACCATTGAAGGGAG 59.061 42.308 1.57 0.00 41.32 4.30
881 926 7.045126 TCACCACGAATTTTAGGTCAAATTT 57.955 32.000 0.00 0.00 36.64 1.82
904 949 4.782019 TCTGCCATGTGTTTATTGGTTC 57.218 40.909 0.00 0.00 32.90 3.62
907 952 3.700539 TCCATCTGCCATGTGTTTATTGG 59.299 43.478 0.00 0.00 0.00 3.16
914 959 4.174704 ACATATTCCATCTGCCATGTGT 57.825 40.909 0.00 0.00 0.00 3.72
915 960 6.829229 AATACATATTCCATCTGCCATGTG 57.171 37.500 0.00 0.00 0.00 3.21
989 1037 0.106708 TAGGGCTTTGCTGCTATCCG 59.893 55.000 0.00 0.00 0.00 4.18
1012 1064 0.825410 TTTTATCCCTCGCGTGCCTA 59.175 50.000 5.77 0.00 0.00 3.93
1013 1065 0.035820 TTTTTATCCCTCGCGTGCCT 60.036 50.000 5.77 0.00 0.00 4.75
1047 1107 1.323271 TGGATCCGTGTGCTCTCCTC 61.323 60.000 7.39 0.00 0.00 3.71
1048 1108 0.904865 TTGGATCCGTGTGCTCTCCT 60.905 55.000 7.39 0.00 0.00 3.69
1049 1109 0.036388 TTTGGATCCGTGTGCTCTCC 60.036 55.000 7.39 0.00 0.00 3.71
1050 1110 1.464997 GTTTTGGATCCGTGTGCTCTC 59.535 52.381 7.39 0.00 0.00 3.20
1051 1111 1.523758 GTTTTGGATCCGTGTGCTCT 58.476 50.000 7.39 0.00 0.00 4.09
1052 1112 0.165944 CGTTTTGGATCCGTGTGCTC 59.834 55.000 7.39 0.00 0.00 4.26
1053 1113 1.852067 GCGTTTTGGATCCGTGTGCT 61.852 55.000 7.39 0.00 0.00 4.40
1054 1114 1.442017 GCGTTTTGGATCCGTGTGC 60.442 57.895 7.39 3.63 0.00 4.57
1055 1115 0.110238 CTGCGTTTTGGATCCGTGTG 60.110 55.000 7.39 0.00 0.00 3.82
1056 1116 1.852067 GCTGCGTTTTGGATCCGTGT 61.852 55.000 7.39 0.00 0.00 4.49
1061 1121 0.179215 CACTCGCTGCGTTTTGGATC 60.179 55.000 22.48 0.00 0.00 3.36
1159 1228 1.599606 CCTCCTGTCCTGGACTGACG 61.600 65.000 28.83 19.66 35.46 4.35
1175 1244 3.262686 GAATCGAACGCGCCCCTC 61.263 66.667 5.73 0.00 37.46 4.30
1178 1247 2.412292 GAATCGAATCGAACGCGCCC 62.412 60.000 10.12 0.00 39.99 6.13
1179 1248 1.084227 GAATCGAATCGAACGCGCC 60.084 57.895 10.12 0.00 39.99 6.53
1180 1249 1.433436 CGAATCGAATCGAACGCGC 60.433 57.895 17.84 0.00 45.48 6.86
1181 1250 0.293723 AACGAATCGAATCGAACGCG 59.706 50.000 28.29 22.00 45.48 6.01
1182 1251 2.342622 GAAACGAATCGAATCGAACGC 58.657 47.619 28.29 11.08 45.48 4.84
1183 1252 2.590400 CGAAACGAATCGAATCGAACG 58.410 47.619 28.29 24.57 45.48 3.95
1199 1268 4.207165 GGGATGGGATTTTGATCTCGAAA 58.793 43.478 0.00 0.00 34.08 3.46
1219 1288 4.722700 CTGGCTGGGTGGTTCGGG 62.723 72.222 0.00 0.00 0.00 5.14
1222 1291 2.360475 GCTCTGGCTGGGTGGTTC 60.360 66.667 0.00 0.00 35.22 3.62
1231 1300 3.517140 CTCGCTCTCGCTCTGGCT 61.517 66.667 0.00 0.00 36.09 4.75
1420 1489 4.298009 GAGGACTCGACGTGGAGA 57.702 61.111 30.91 9.46 37.49 3.71
1485 1554 2.556189 CAGCCTACTACGCATCTGATCT 59.444 50.000 0.00 0.00 0.00 2.75
1502 1571 3.565482 TGACTCAACTGATCAAAACAGCC 59.435 43.478 0.00 0.00 38.74 4.85
1503 1572 4.274459 ACTGACTCAACTGATCAAAACAGC 59.726 41.667 0.00 0.00 38.74 4.40
1505 1574 5.449041 GCAACTGACTCAACTGATCAAAACA 60.449 40.000 0.00 0.00 0.00 2.83
1506 1575 4.972440 GCAACTGACTCAACTGATCAAAAC 59.028 41.667 0.00 0.00 0.00 2.43
1507 1576 4.036734 GGCAACTGACTCAACTGATCAAAA 59.963 41.667 0.00 0.00 0.00 2.44
1530 1609 7.012421 GTGGCAACTATAAACCTCTAATTCAGG 59.988 40.741 0.00 2.37 35.42 3.86
1576 1655 5.050023 GGAACTCAACTGACTAAACTGAAGC 60.050 44.000 0.00 0.00 0.00 3.86
1603 1682 1.811266 CCGCAGTGATCGTGGGAAG 60.811 63.158 12.08 0.00 0.00 3.46
1604 1683 1.822114 TTCCGCAGTGATCGTGGGAA 61.822 55.000 12.08 11.44 34.65 3.97
1605 1684 1.613317 ATTCCGCAGTGATCGTGGGA 61.613 55.000 12.08 7.09 34.65 4.37
1606 1685 0.744414 AATTCCGCAGTGATCGTGGG 60.744 55.000 0.00 5.27 34.65 4.61
1607 1686 0.652592 GAATTCCGCAGTGATCGTGG 59.347 55.000 0.00 0.00 35.24 4.94
1608 1687 1.061131 GTGAATTCCGCAGTGATCGTG 59.939 52.381 2.27 0.00 0.00 4.35
1609 1688 1.066858 AGTGAATTCCGCAGTGATCGT 60.067 47.619 2.27 0.00 0.00 3.73
1610 1689 1.590238 GAGTGAATTCCGCAGTGATCG 59.410 52.381 2.27 0.00 0.00 3.69
1633 1712 5.765182 CAGAGTGGAGTGGTAAAAACAATCT 59.235 40.000 0.00 0.00 34.14 2.40
1674 1753 7.520776 CGTGTCACCTACCTAGAATTCTAGATG 60.521 44.444 34.41 23.87 46.80 2.90
1729 1808 7.164122 TCTCTGTTCATCTAAGAAATTGCAGT 58.836 34.615 0.00 0.00 0.00 4.40
1765 1844 4.382685 GGCTTGGCTATGACTGTACTGTTA 60.383 45.833 6.86 3.28 0.00 2.41
1767 1846 2.093447 GGCTTGGCTATGACTGTACTGT 60.093 50.000 4.92 4.92 0.00 3.55
1797 1880 7.395772 GGAGAGGGAAAGATGAAGAAGAAAATT 59.604 37.037 0.00 0.00 0.00 1.82
1818 1902 7.663493 AGTTTCTTAAGTTTTGGATCAGGAGAG 59.337 37.037 1.63 0.00 0.00 3.20
1819 1903 7.518188 AGTTTCTTAAGTTTTGGATCAGGAGA 58.482 34.615 1.63 0.00 0.00 3.71
1820 1904 7.751768 AGTTTCTTAAGTTTTGGATCAGGAG 57.248 36.000 1.63 0.00 0.00 3.69
1821 1905 9.807921 ATAAGTTTCTTAAGTTTTGGATCAGGA 57.192 29.630 1.63 0.00 0.00 3.86
1902 1986 3.452990 TGGTTTCTTGCGGAGGATGTATA 59.547 43.478 0.00 0.00 0.00 1.47
1903 1987 2.238646 TGGTTTCTTGCGGAGGATGTAT 59.761 45.455 0.00 0.00 0.00 2.29
1904 1988 1.626321 TGGTTTCTTGCGGAGGATGTA 59.374 47.619 0.00 0.00 0.00 2.29
1905 1989 0.400213 TGGTTTCTTGCGGAGGATGT 59.600 50.000 0.00 0.00 0.00 3.06
1906 1990 0.804989 GTGGTTTCTTGCGGAGGATG 59.195 55.000 0.00 0.00 0.00 3.51
1907 1991 0.693049 AGTGGTTTCTTGCGGAGGAT 59.307 50.000 0.00 0.00 0.00 3.24
1908 1992 0.250295 CAGTGGTTTCTTGCGGAGGA 60.250 55.000 0.00 0.00 0.00 3.71
1952 2036 7.944000 TCCGATTATTATACCACCACTACTGTA 59.056 37.037 0.00 0.00 0.00 2.74
1953 2037 6.779049 TCCGATTATTATACCACCACTACTGT 59.221 38.462 0.00 0.00 0.00 3.55
1954 2038 7.223260 TCCGATTATTATACCACCACTACTG 57.777 40.000 0.00 0.00 0.00 2.74
1957 2041 6.885918 TCGATCCGATTATTATACCACCACTA 59.114 38.462 0.00 0.00 0.00 2.74
1961 2045 6.628185 AGTTCGATCCGATTATTATACCACC 58.372 40.000 0.00 0.00 35.23 4.61
1964 2048 9.852091 AAGTAAGTTCGATCCGATTATTATACC 57.148 33.333 0.00 0.00 35.23 2.73
1975 2059 4.085210 GCCGATTAAAGTAAGTTCGATCCG 60.085 45.833 0.00 0.00 31.74 4.18
2028 2112 5.080068 GTGCAGTAAATTAAACTGACGAGC 58.920 41.667 19.81 8.39 45.89 5.03
2046 2130 2.163818 TTAGTCTTTGACCCGTGCAG 57.836 50.000 0.00 0.00 32.18 4.41
2047 2131 2.614481 GGATTAGTCTTTGACCCGTGCA 60.614 50.000 0.00 0.00 32.18 4.57
2048 2132 2.007608 GGATTAGTCTTTGACCCGTGC 58.992 52.381 0.00 0.00 32.18 5.34
2080 2164 5.080969 TGTATTTTAGTGGAGAGGAACCG 57.919 43.478 0.00 0.00 0.00 4.44
2082 2166 6.697892 CGATCTGTATTTTAGTGGAGAGGAAC 59.302 42.308 0.00 0.00 0.00 3.62
2084 2168 5.302059 CCGATCTGTATTTTAGTGGAGAGGA 59.698 44.000 0.00 0.00 0.00 3.71
2086 2170 6.392625 TCCGATCTGTATTTTAGTGGAGAG 57.607 41.667 0.00 0.00 0.00 3.20
2237 2334 0.321671 TTGAGAAAGAGGTCGCCAGG 59.678 55.000 0.00 0.00 0.00 4.45
2294 2396 3.250040 CCTAACTGAACCCGTTGAAACTG 59.750 47.826 0.00 0.00 0.00 3.16
2296 2398 3.208594 ACCTAACTGAACCCGTTGAAAC 58.791 45.455 0.00 0.00 0.00 2.78
2334 2436 1.229428 GCAAGTGCAGAGCAGTGTTA 58.771 50.000 0.00 0.00 41.77 2.41
2374 2502 0.615850 CAGGGGAGGTTGACTTCCTC 59.384 60.000 11.47 8.03 45.17 3.71
2411 2539 1.537202 CTGCTGCCAAGTTCCTTGTAC 59.463 52.381 0.00 0.00 39.58 2.90
2524 2652 3.305881 GCCTACTGAATATGGACGGTACC 60.306 52.174 0.16 0.16 0.00 3.34
2578 2706 1.385528 TCAGAGGCGCATCGTAGTAA 58.614 50.000 17.28 0.00 0.00 2.24
2628 2757 3.428045 GCAGGTGTGTGGCAAAGATAATC 60.428 47.826 0.00 0.00 0.00 1.75
2688 2817 4.691216 CAGTACTGCTACCACTTTTTCTCC 59.309 45.833 10.54 0.00 0.00 3.71
2708 2837 0.767375 ATGAGGACACCACAAGCAGT 59.233 50.000 0.00 0.00 0.00 4.40
2717 2846 0.102120 CTGCGAGAGATGAGGACACC 59.898 60.000 0.00 0.00 0.00 4.16
2726 2855 0.177604 CAAGGGAAGCTGCGAGAGAT 59.822 55.000 0.00 0.00 0.00 2.75
2751 2882 5.398603 AGACAAGTATCTCAAGACCACAG 57.601 43.478 0.00 0.00 0.00 3.66
2752 2883 5.808366 AAGACAAGTATCTCAAGACCACA 57.192 39.130 0.00 0.00 0.00 4.17
2753 2884 5.808030 GCTAAGACAAGTATCTCAAGACCAC 59.192 44.000 0.00 0.00 0.00 4.16
2871 3026 1.279271 AGAAAACCTCCTGATGACCGG 59.721 52.381 0.00 0.00 0.00 5.28
2895 3050 3.376859 TGTGTGGTTGAGTGTCACATTTC 59.623 43.478 5.62 0.00 42.34 2.17
2909 3066 3.524095 TCTCCCAATGATTGTGTGGTT 57.476 42.857 4.27 0.00 0.00 3.67
3037 3221 0.319469 CCCCGGTTTGATTTGTGCAC 60.319 55.000 10.75 10.75 0.00 4.57
3195 3386 7.327214 AGCTCCACAAAGATACAAAACAAAAA 58.673 30.769 0.00 0.00 0.00 1.94
3230 3421 0.106419 AACGGCTGGGGACAAAAAGA 60.106 50.000 0.00 0.00 42.06 2.52
3249 3440 0.534877 ACTCCATGTTGCTGCAACGA 60.535 50.000 32.71 24.39 46.13 3.85
3322 3513 1.214367 CGCAAGTTCACTTACACGGT 58.786 50.000 0.00 0.00 34.28 4.83
3329 3520 2.591715 AGCGCCGCAAGTTCACTT 60.592 55.556 13.36 0.00 36.45 3.16
3382 3573 7.642586 GCACGACACGCATGAATATATATAGTA 59.357 37.037 0.00 0.00 0.00 1.82
3383 3574 6.472486 GCACGACACGCATGAATATATATAGT 59.528 38.462 0.00 0.00 0.00 2.12
3384 3575 6.344234 CGCACGACACGCATGAATATATATAG 60.344 42.308 0.00 0.00 0.00 1.31
3385 3576 5.454232 CGCACGACACGCATGAATATATATA 59.546 40.000 0.00 0.00 0.00 0.86
3386 3577 4.265320 CGCACGACACGCATGAATATATAT 59.735 41.667 0.00 0.00 0.00 0.86
3399 3590 3.636043 ACAAAGGCGCACGACACG 61.636 61.111 10.83 0.00 0.00 4.49
3425 3616 3.679083 CGCCTCCTTTTCCACTACCTAAG 60.679 52.174 0.00 0.00 0.00 2.18
3438 3629 1.814793 GAAGCTTCTTCGCCTCCTTT 58.185 50.000 19.44 0.00 0.00 3.11
3475 3666 1.668419 CTAGCCAAGAACATTCCCCG 58.332 55.000 0.00 0.00 0.00 5.73
3493 3684 1.001641 ATGCGCCTTTTCCTCAGCT 60.002 52.632 4.18 0.00 0.00 4.24
3494 3685 1.138247 CATGCGCCTTTTCCTCAGC 59.862 57.895 4.18 0.00 0.00 4.26
3495 3686 1.138247 GCATGCGCCTTTTCCTCAG 59.862 57.895 4.18 0.00 0.00 3.35
3496 3687 2.689785 CGCATGCGCCTTTTCCTCA 61.690 57.895 29.09 0.00 33.11 3.86
3559 3750 3.808116 TCGATATTCTTCTACCGCGAG 57.192 47.619 8.23 0.00 0.00 5.03
3657 3848 8.198109 CCAGAAGAGGAAGTAAAAGATATTCGA 58.802 37.037 0.00 0.00 0.00 3.71
3658 3849 7.439655 CCCAGAAGAGGAAGTAAAAGATATTCG 59.560 40.741 0.00 0.00 0.00 3.34
3659 3850 8.487028 TCCCAGAAGAGGAAGTAAAAGATATTC 58.513 37.037 0.00 0.00 0.00 1.75
3660 3851 8.393959 TCCCAGAAGAGGAAGTAAAAGATATT 57.606 34.615 0.00 0.00 0.00 1.28
3661 3852 7.625682 ACTCCCAGAAGAGGAAGTAAAAGATAT 59.374 37.037 0.00 0.00 38.26 1.63
3662 3853 6.960542 ACTCCCAGAAGAGGAAGTAAAAGATA 59.039 38.462 0.00 0.00 38.26 1.98
3694 3885 5.590530 ACACCAGAAGCTATCTAGACAAG 57.409 43.478 0.00 0.00 36.32 3.16
3724 3920 1.199789 ACACACAGCATTATTGGCACG 59.800 47.619 0.00 0.00 0.00 5.34
3737 3938 1.739466 AGAACACAACAGCACACACAG 59.261 47.619 0.00 0.00 0.00 3.66
3739 3940 2.919666 AAGAACACAACAGCACACAC 57.080 45.000 0.00 0.00 0.00 3.82
3743 3944 4.211389 CGATGTAAAGAACACAACAGCAC 58.789 43.478 0.00 0.00 42.09 4.40
3761 3962 0.310854 GATAAAAAGGGCGGGCGATG 59.689 55.000 0.00 0.00 0.00 3.84
3794 3995 2.915659 TGCCGAGTCGAGGGTGTT 60.916 61.111 15.64 0.00 0.00 3.32
3802 4003 2.537792 TAACCGAAGCTGCCGAGTCG 62.538 60.000 5.29 5.29 0.00 4.18
3825 4026 1.640593 TTCCACTTCCACCACTGGCA 61.641 55.000 0.00 0.00 37.49 4.92
3860 4061 3.612795 ATTAATAAGACCTTGGGGCCC 57.387 47.619 18.17 18.17 35.63 5.80
3988 4191 2.557056 GCCCTAAGAAAGTGTTGTTCCC 59.443 50.000 0.00 0.00 0.00 3.97
4044 4247 8.190326 TGAGAACATCTCCTACTTCACTTTTA 57.810 34.615 5.00 0.00 42.73 1.52
4080 4283 5.150715 TGTCATCATCTCCTACTGGCTATT 58.849 41.667 0.00 0.00 0.00 1.73
4177 4416 3.402628 ACGGCAACAGAGTGACTTTAT 57.597 42.857 0.00 0.00 0.00 1.40
4178 4417 2.902705 ACGGCAACAGAGTGACTTTA 57.097 45.000 0.00 0.00 0.00 1.85
4179 4418 1.940613 GAACGGCAACAGAGTGACTTT 59.059 47.619 0.00 0.00 0.00 2.66
4182 4421 1.295792 TTGAACGGCAACAGAGTGAC 58.704 50.000 0.00 0.00 0.00 3.67
4193 4432 4.028852 AGTGACTTTTTCTTTGAACGGC 57.971 40.909 0.00 0.00 0.00 5.68
4229 4469 7.895429 TCCTTTCTTTCCCACTAATTTCATGAT 59.105 33.333 0.00 0.00 0.00 2.45
4239 4479 4.042934 CCCTTTCTCCTTTCTTTCCCACTA 59.957 45.833 0.00 0.00 0.00 2.74
4249 4491 7.119407 GTGTATACTTGTTCCCTTTCTCCTTTC 59.881 40.741 4.17 0.00 0.00 2.62
4261 4503 5.468746 TCAGCTTGTTGTGTATACTTGTTCC 59.531 40.000 4.17 0.00 0.00 3.62
4688 4964 1.279271 GGCTTCTTCTGCACCTTAGGA 59.721 52.381 4.77 0.00 0.00 2.94
4689 4965 1.003580 TGGCTTCTTCTGCACCTTAGG 59.996 52.381 0.00 0.00 0.00 2.69
4690 4966 2.354259 CTGGCTTCTTCTGCACCTTAG 58.646 52.381 0.00 0.00 0.00 2.18
4691 4967 1.611673 GCTGGCTTCTTCTGCACCTTA 60.612 52.381 0.00 0.00 0.00 2.69
4692 4968 0.892814 GCTGGCTTCTTCTGCACCTT 60.893 55.000 0.00 0.00 0.00 3.50
4693 4969 1.303155 GCTGGCTTCTTCTGCACCT 60.303 57.895 0.00 0.00 0.00 4.00
4694 4970 1.584380 CTGCTGGCTTCTTCTGCACC 61.584 60.000 0.00 0.00 35.70 5.01
4695 4971 0.604780 TCTGCTGGCTTCTTCTGCAC 60.605 55.000 0.00 0.00 35.70 4.57
4696 4972 0.321387 CTCTGCTGGCTTCTTCTGCA 60.321 55.000 0.00 0.00 37.48 4.41
4697 4973 1.646624 GCTCTGCTGGCTTCTTCTGC 61.647 60.000 0.00 0.00 0.00 4.26
4698 4974 0.321387 TGCTCTGCTGGCTTCTTCTG 60.321 55.000 5.84 0.00 0.00 3.02
4821 5097 1.209019 CTTCAGTATGCTGCCTCCACT 59.791 52.381 5.85 0.00 42.29 4.00
5022 5298 3.005898 CATTCCATGTCGGCGTCG 58.994 61.111 1.15 1.15 37.82 5.12
5025 5301 2.711311 CTGCATTCCATGTCGGCG 59.289 61.111 0.00 0.00 33.14 6.46
5027 5303 1.769098 CGAGCTGCATTCCATGTCGG 61.769 60.000 1.02 0.00 0.00 4.79
5054 5336 3.199071 TCTTGTTATTATGGACCGGTGCT 59.801 43.478 27.28 14.68 0.00 4.40
5169 5451 2.111878 GATGGGGGTGCTGATCGG 59.888 66.667 0.00 0.00 0.00 4.18
5224 5507 0.250901 ACCCGCTCTGCAAACTGAAT 60.251 50.000 0.00 0.00 0.00 2.57
5241 5524 0.603975 ACTTTCAGAGGCTTGCGACC 60.604 55.000 0.00 0.00 0.00 4.79
5288 5571 0.042708 CGAGAATTCAGCGCAATCGG 60.043 55.000 11.47 0.00 35.95 4.18
5321 5605 2.203126 CCCCTCTTGCTCCATCGC 60.203 66.667 0.00 0.00 0.00 4.58
5362 5646 1.463674 GACTACCGAACGACCCCTTA 58.536 55.000 0.00 0.00 0.00 2.69
5363 5647 1.253593 GGACTACCGAACGACCCCTT 61.254 60.000 0.00 0.00 0.00 3.95
5364 5648 1.680314 GGACTACCGAACGACCCCT 60.680 63.158 0.00 0.00 0.00 4.79
5365 5649 1.978617 TGGACTACCGAACGACCCC 60.979 63.158 0.00 0.00 39.42 4.95
5366 5650 1.213799 GTGGACTACCGAACGACCC 59.786 63.158 0.00 0.00 39.42 4.46
5367 5651 1.213799 GGTGGACTACCGAACGACC 59.786 63.158 0.00 0.00 40.26 4.79
5368 5652 4.876652 GGTGGACTACCGAACGAC 57.123 61.111 0.00 0.00 40.26 4.34
5388 5672 5.335827 GCAGATTCTAAAATACTGCGGAG 57.664 43.478 0.85 0.85 42.92 4.63
5393 5677 7.168302 CGGTACTCTGCAGATTCTAAAATACTG 59.832 40.741 18.63 6.13 0.00 2.74
5394 5678 7.147880 ACGGTACTCTGCAGATTCTAAAATACT 60.148 37.037 18.63 0.00 0.00 2.12
5395 5679 6.979238 ACGGTACTCTGCAGATTCTAAAATAC 59.021 38.462 18.63 4.65 0.00 1.89
5396 5680 7.108841 ACGGTACTCTGCAGATTCTAAAATA 57.891 36.000 18.63 0.00 0.00 1.40
5397 5681 5.978814 ACGGTACTCTGCAGATTCTAAAAT 58.021 37.500 18.63 0.00 0.00 1.82
5398 5682 5.401531 ACGGTACTCTGCAGATTCTAAAA 57.598 39.130 18.63 0.00 0.00 1.52
5399 5683 5.401531 AACGGTACTCTGCAGATTCTAAA 57.598 39.130 18.63 0.00 0.00 1.85
5400 5684 5.185249 AGAAACGGTACTCTGCAGATTCTAA 59.815 40.000 18.63 0.00 0.00 2.10
5401 5685 4.705507 AGAAACGGTACTCTGCAGATTCTA 59.294 41.667 18.63 4.36 0.00 2.10
5402 5686 3.511934 AGAAACGGTACTCTGCAGATTCT 59.488 43.478 18.63 17.59 0.00 2.40
5403 5687 3.851098 AGAAACGGTACTCTGCAGATTC 58.149 45.455 18.63 15.58 0.00 2.52
5404 5688 3.511934 AGAGAAACGGTACTCTGCAGATT 59.488 43.478 18.63 14.83 41.19 2.40
5405 5689 3.093057 AGAGAAACGGTACTCTGCAGAT 58.907 45.455 18.63 10.18 41.19 2.90
5406 5690 2.488545 GAGAGAAACGGTACTCTGCAGA 59.511 50.000 17.19 17.19 42.51 4.26
5407 5691 2.729467 CGAGAGAAACGGTACTCTGCAG 60.729 54.545 17.99 7.63 42.51 4.41
5408 5692 1.199327 CGAGAGAAACGGTACTCTGCA 59.801 52.381 17.99 0.00 42.51 4.41
5409 5693 1.897641 CGAGAGAAACGGTACTCTGC 58.102 55.000 17.99 10.95 42.51 4.26
5410 5694 1.469308 AGCGAGAGAAACGGTACTCTG 59.531 52.381 17.99 12.68 42.51 3.35
5411 5695 1.738908 GAGCGAGAGAAACGGTACTCT 59.261 52.381 14.57 14.57 44.68 3.24
5412 5696 1.202166 GGAGCGAGAGAAACGGTACTC 60.202 57.143 0.00 7.02 41.38 2.59
5413 5697 0.810016 GGAGCGAGAGAAACGGTACT 59.190 55.000 0.00 0.00 41.38 2.73
5414 5698 0.522915 CGGAGCGAGAGAAACGGTAC 60.523 60.000 0.00 0.00 41.38 3.34
5415 5699 0.957395 ACGGAGCGAGAGAAACGGTA 60.957 55.000 0.00 0.00 41.38 4.02
5416 5700 0.957395 TACGGAGCGAGAGAAACGGT 60.957 55.000 0.00 0.00 43.87 4.83
5417 5701 0.522915 GTACGGAGCGAGAGAAACGG 60.523 60.000 0.00 0.00 0.00 4.44
5418 5702 0.447011 AGTACGGAGCGAGAGAAACG 59.553 55.000 0.00 0.00 0.00 3.60
5419 5703 2.633199 AAGTACGGAGCGAGAGAAAC 57.367 50.000 0.00 0.00 0.00 2.78
5420 5704 3.655276 AAAAGTACGGAGCGAGAGAAA 57.345 42.857 0.00 0.00 0.00 2.52
5421 5705 3.655276 AAAAAGTACGGAGCGAGAGAA 57.345 42.857 0.00 0.00 0.00 2.87
5422 5706 4.217118 AGTTAAAAAGTACGGAGCGAGAGA 59.783 41.667 0.00 0.00 0.00 3.10
5423 5707 4.483311 AGTTAAAAAGTACGGAGCGAGAG 58.517 43.478 0.00 0.00 0.00 3.20
5424 5708 4.510038 AGTTAAAAAGTACGGAGCGAGA 57.490 40.909 0.00 0.00 0.00 4.04
5425 5709 5.156355 TGTAGTTAAAAAGTACGGAGCGAG 58.844 41.667 0.00 0.00 39.62 5.03
5426 5710 5.119931 TGTAGTTAAAAAGTACGGAGCGA 57.880 39.130 0.00 0.00 39.62 4.93
5427 5711 5.403466 AGTTGTAGTTAAAAAGTACGGAGCG 59.597 40.000 0.00 0.00 39.62 5.03
5428 5712 6.128715 GGAGTTGTAGTTAAAAAGTACGGAGC 60.129 42.308 0.00 0.00 39.62 4.70
5429 5713 6.367149 GGGAGTTGTAGTTAAAAAGTACGGAG 59.633 42.308 0.00 0.00 39.62 4.63
5430 5714 6.223120 GGGAGTTGTAGTTAAAAAGTACGGA 58.777 40.000 0.00 0.00 39.62 4.69
5431 5715 5.119125 CGGGAGTTGTAGTTAAAAAGTACGG 59.881 44.000 0.00 0.00 39.62 4.02
5432 5716 5.691754 ACGGGAGTTGTAGTTAAAAAGTACG 59.308 40.000 0.00 0.00 43.33 3.67
5483 5767 3.787001 CCTGTTCGGAGGGCCTCC 61.787 72.222 38.08 38.08 46.44 4.30
5484 5768 4.475135 GCCTGTTCGGAGGGCCTC 62.475 72.222 25.80 25.80 39.96 4.70
5488 5772 1.559065 TTTAGGGCCTGTTCGGAGGG 61.559 60.000 18.53 0.00 33.17 4.30
5489 5773 0.546598 ATTTAGGGCCTGTTCGGAGG 59.453 55.000 18.53 0.00 36.03 4.30
5490 5774 3.557264 GGATATTTAGGGCCTGTTCGGAG 60.557 52.174 18.53 0.00 33.16 4.63
5491 5775 2.370849 GGATATTTAGGGCCTGTTCGGA 59.629 50.000 18.53 0.00 33.16 4.55
5492 5776 2.779506 GGATATTTAGGGCCTGTTCGG 58.220 52.381 18.53 0.00 0.00 4.30
5493 5777 2.413837 CGGATATTTAGGGCCTGTTCG 58.586 52.381 18.53 6.58 0.00 3.95
5494 5778 2.105993 ACCGGATATTTAGGGCCTGTTC 59.894 50.000 18.53 5.43 0.00 3.18
5495 5779 2.132686 ACCGGATATTTAGGGCCTGTT 58.867 47.619 18.53 2.87 0.00 3.16
5496 5780 1.815757 ACCGGATATTTAGGGCCTGT 58.184 50.000 18.53 4.61 0.00 4.00
5497 5781 2.951229 AACCGGATATTTAGGGCCTG 57.049 50.000 18.53 0.00 0.00 4.85
5498 5782 2.107726 GGAAACCGGATATTTAGGGCCT 59.892 50.000 12.58 12.58 0.00 5.19
5499 5783 2.511659 GGAAACCGGATATTTAGGGCC 58.488 52.381 9.46 0.00 0.00 5.80
5500 5784 2.511659 GGGAAACCGGATATTTAGGGC 58.488 52.381 9.46 0.00 43.64 5.19
5519 5803 6.421377 TCAAAATGACATATGAACGACAGG 57.579 37.500 10.38 0.00 0.00 4.00
5536 5820 7.944729 ATAGCAGGTGACAACTAATCAAAAT 57.055 32.000 0.00 0.00 0.00 1.82
5540 5824 6.048732 TGAATAGCAGGTGACAACTAATCA 57.951 37.500 0.00 0.00 31.44 2.57
5541 5825 6.371548 TGTTGAATAGCAGGTGACAACTAATC 59.628 38.462 0.00 0.00 38.51 1.75
5596 5880 1.167851 CCAAGAAATGAGCAAGGCGA 58.832 50.000 0.00 0.00 0.00 5.54
5597 5881 0.883833 ACCAAGAAATGAGCAAGGCG 59.116 50.000 0.00 0.00 0.00 5.52
5603 5887 4.702131 ACCAGATAACACCAAGAAATGAGC 59.298 41.667 0.00 0.00 0.00 4.26
5627 5914 1.313091 GGTCCCCTTCATTTCGCCAC 61.313 60.000 0.00 0.00 0.00 5.01
5687 5974 2.025155 TCGTGCTCCTCCATTACTCTC 58.975 52.381 0.00 0.00 0.00 3.20
5774 6061 0.463116 ACGTGTCGCTTCCCTTTGTT 60.463 50.000 0.00 0.00 0.00 2.83
5776 6063 1.504359 TAACGTGTCGCTTCCCTTTG 58.496 50.000 0.00 0.00 0.00 2.77
5777 6064 2.073816 CATAACGTGTCGCTTCCCTTT 58.926 47.619 0.00 0.00 0.00 3.11
5830 6117 2.029828 GGAGACGTCGATGGATAATGCT 60.030 50.000 10.46 0.00 0.00 3.79
5928 6215 6.595326 TGTATAGTCATGGCTGAACAGAAAAG 59.405 38.462 10.89 0.00 31.85 2.27
5950 6237 2.513753 CACTTCTGCCAAACCCATGTA 58.486 47.619 0.00 0.00 0.00 2.29
5976 6263 2.993220 TCTTGTCGAATGTCAACGGATG 59.007 45.455 0.00 0.00 0.00 3.51
6018 6305 7.540474 TCTCAGTTTGAGTAAATCTGGTAGT 57.460 36.000 6.03 0.00 44.58 2.73
6019 6306 6.533367 GCTCTCAGTTTGAGTAAATCTGGTAG 59.467 42.308 6.03 0.00 44.58 3.18
6021 6308 5.221722 TGCTCTCAGTTTGAGTAAATCTGGT 60.222 40.000 6.03 0.00 44.58 4.00
6025 6312 6.128418 GGAGTTGCTCTCAGTTTGAGTAAATC 60.128 42.308 11.44 11.44 44.58 2.17
6026 6313 5.703130 GGAGTTGCTCTCAGTTTGAGTAAAT 59.297 40.000 6.03 0.00 44.58 1.40
6027 6314 5.057149 GGAGTTGCTCTCAGTTTGAGTAAA 58.943 41.667 6.03 0.00 44.58 2.01
6028 6315 4.100963 TGGAGTTGCTCTCAGTTTGAGTAA 59.899 41.667 6.03 0.00 44.58 2.24
6029 6316 3.641436 TGGAGTTGCTCTCAGTTTGAGTA 59.359 43.478 6.03 0.00 44.58 2.59
6030 6317 2.435805 TGGAGTTGCTCTCAGTTTGAGT 59.564 45.455 6.03 0.00 44.58 3.41
6031 6318 3.117491 TGGAGTTGCTCTCAGTTTGAG 57.883 47.619 10.56 0.00 45.59 3.02
6032 6319 3.206150 GTTGGAGTTGCTCTCAGTTTGA 58.794 45.455 10.56 0.00 44.40 2.69
6033 6320 2.032549 CGTTGGAGTTGCTCTCAGTTTG 60.033 50.000 10.56 0.00 44.40 2.93
6034 6321 2.213499 CGTTGGAGTTGCTCTCAGTTT 58.787 47.619 10.56 0.00 44.40 2.66
6035 6322 1.541233 CCGTTGGAGTTGCTCTCAGTT 60.541 52.381 10.56 0.00 44.40 3.16
6036 6323 0.034059 CCGTTGGAGTTGCTCTCAGT 59.966 55.000 10.56 0.00 44.40 3.41
6037 6324 0.671781 CCCGTTGGAGTTGCTCTCAG 60.672 60.000 10.56 1.41 44.40 3.35
6038 6325 1.371183 CCCGTTGGAGTTGCTCTCA 59.629 57.895 10.56 0.00 44.40 3.27
6039 6326 2.035442 GCCCGTTGGAGTTGCTCTC 61.035 63.158 1.79 1.79 42.07 3.20
6061 6348 4.612412 AAGCGCCGTCCGTTTGGA 62.612 61.111 2.29 0.00 43.88 3.53
6163 6453 4.415783 GACAAAATGGGTCGGGCT 57.584 55.556 0.00 0.00 0.00 5.19
6302 6596 2.261671 CTAGGGCAGCACGTCGTT 59.738 61.111 0.00 0.00 0.00 3.85
6480 6776 2.037136 GGCAAGCGTCTGCAGATGT 61.037 57.895 31.29 18.31 44.52 3.06
6558 6854 4.728110 TCGGGGCGACGGAGAAGA 62.728 66.667 0.00 0.00 0.00 2.87
6585 6881 3.965539 GAGTGGGTCAGCGCTGCAT 62.966 63.158 32.44 13.42 0.00 3.96
6586 6882 4.687215 GAGTGGGTCAGCGCTGCA 62.687 66.667 32.44 21.41 0.00 4.41
6783 7079 1.886777 GCCATCAAGGAGAGCGAGC 60.887 63.158 0.00 0.00 41.22 5.03
6892 7189 2.587194 CATGAGAAGGCGAGGCGG 60.587 66.667 0.00 0.00 0.00 6.13
6903 7200 2.408271 ATTCGCCTTTGAGCATGAGA 57.592 45.000 0.00 0.00 0.00 3.27


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.