Multiple sequence alignment - TraesCS2A01G432900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G432900 chr2A 100.000 3215 0 0 1 3215 686175645 686172431 0.000000e+00 5938.0
1 TraesCS2A01G432900 chr2B 90.727 2847 154 48 399 3215 648485633 648482867 0.000000e+00 3694.0
2 TraesCS2A01G432900 chr2B 93.333 45 3 0 2861 2905 648483165 648483121 2.070000e-07 67.6
3 TraesCS2A01G432900 chr2D 84.094 1314 116 48 609 1882 543322400 543321140 0.000000e+00 1182.0
4 TraesCS2A01G432900 chr2D 91.262 309 14 7 2907 3215 543320168 543319873 2.990000e-110 409.0
5 TraesCS2A01G432900 chr2D 89.298 299 27 3 1931 2228 543320955 543320661 1.410000e-98 370.0
6 TraesCS2A01G432900 chr1D 88.537 410 32 7 1 398 290450757 290451163 1.730000e-132 483.0
7 TraesCS2A01G432900 chr5A 88.509 409 32 9 1 398 649456489 649456893 6.240000e-132 481.0
8 TraesCS2A01G432900 chr6D 88.452 407 34 8 1 396 329442061 329442465 2.240000e-131 479.0
9 TraesCS2A01G432900 chr6D 87.961 407 36 8 1 397 55938067 55937664 4.860000e-128 468.0
10 TraesCS2A01G432900 chr3B 88.424 406 33 8 1 398 143254412 143254811 8.070000e-131 477.0
11 TraesCS2A01G432900 chr7D 88.049 410 31 12 1 397 27666504 27666100 1.350000e-128 470.0
12 TraesCS2A01G432900 chr7B 87.711 415 27 16 1 398 525688552 525688145 2.260000e-126 462.0
13 TraesCS2A01G432900 chr7B 87.591 411 31 13 1 398 525621676 525621273 2.920000e-125 459.0
14 TraesCS2A01G432900 chrUn 87.469 407 38 8 1 398 150792255 150791853 1.050000e-124 457.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G432900 chr2A 686172431 686175645 3214 True 5938.000000 5938 100.000 1 3215 1 chr2A.!!$R1 3214
1 TraesCS2A01G432900 chr2B 648482867 648485633 2766 True 1880.800000 3694 92.030 399 3215 2 chr2B.!!$R1 2816
2 TraesCS2A01G432900 chr2D 543319873 543322400 2527 True 653.666667 1182 88.218 609 3215 3 chr2D.!!$R1 2606

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
166 167 0.034337 TCGTGTAGGTCTGGGCAAAC 59.966 55.0 0.00 0.0 0.00 2.93 F
600 603 0.036010 AGCTTGATGCAAGGCTACGT 60.036 50.0 9.01 0.0 45.94 3.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1653 1684 0.110486 GGAAGCACCTCCAAACTGGA 59.890 55.0 0.00 0.0 45.98 3.86 R
2560 2801 0.621571 TAACCTCCATGCAGGCTCCT 60.622 55.0 1.32 0.0 36.98 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.859165 AAGTGCTCTTTTGATCCCGA 57.141 45.000 0.00 0.00 0.00 5.14
21 22 2.393271 AGTGCTCTTTTGATCCCGAG 57.607 50.000 0.00 0.00 0.00 4.63
22 23 0.729690 GTGCTCTTTTGATCCCGAGC 59.270 55.000 12.80 12.80 46.74 5.03
23 24 0.615331 TGCTCTTTTGATCCCGAGCT 59.385 50.000 17.64 0.00 46.70 4.09
24 25 1.294857 GCTCTTTTGATCCCGAGCTC 58.705 55.000 2.73 2.73 44.04 4.09
25 26 1.406069 GCTCTTTTGATCCCGAGCTCA 60.406 52.381 15.40 0.00 44.04 4.26
26 27 2.744494 GCTCTTTTGATCCCGAGCTCAT 60.744 50.000 15.40 0.00 44.04 2.90
27 28 3.493350 GCTCTTTTGATCCCGAGCTCATA 60.493 47.826 15.40 0.00 44.04 2.15
28 29 4.802248 GCTCTTTTGATCCCGAGCTCATAT 60.802 45.833 15.40 3.21 44.04 1.78
29 30 4.635223 TCTTTTGATCCCGAGCTCATATG 58.365 43.478 15.40 0.00 0.00 1.78
30 31 2.462456 TTGATCCCGAGCTCATATGC 57.538 50.000 15.40 0.11 0.00 3.14
48 49 3.552132 TGCTCCCGCATGAATAGTAAA 57.448 42.857 0.00 0.00 42.25 2.01
49 50 3.879998 TGCTCCCGCATGAATAGTAAAA 58.120 40.909 0.00 0.00 42.25 1.52
50 51 4.460263 TGCTCCCGCATGAATAGTAAAAT 58.540 39.130 0.00 0.00 42.25 1.82
51 52 5.616270 TGCTCCCGCATGAATAGTAAAATA 58.384 37.500 0.00 0.00 42.25 1.40
52 53 6.058833 TGCTCCCGCATGAATAGTAAAATAA 58.941 36.000 0.00 0.00 42.25 1.40
53 54 6.544197 TGCTCCCGCATGAATAGTAAAATAAA 59.456 34.615 0.00 0.00 42.25 1.40
54 55 7.067615 TGCTCCCGCATGAATAGTAAAATAAAA 59.932 33.333 0.00 0.00 42.25 1.52
55 56 7.918562 GCTCCCGCATGAATAGTAAAATAAAAA 59.081 33.333 0.00 0.00 35.78 1.94
121 122 9.436957 AGAAATTGATGAATGTTCTAACTACGT 57.563 29.630 0.00 0.00 0.00 3.57
122 123 9.478019 GAAATTGATGAATGTTCTAACTACGTG 57.522 33.333 0.00 0.00 0.00 4.49
123 124 6.403333 TTGATGAATGTTCTAACTACGTGC 57.597 37.500 0.00 0.00 0.00 5.34
124 125 5.474825 TGATGAATGTTCTAACTACGTGCA 58.525 37.500 0.00 0.00 0.00 4.57
125 126 5.929415 TGATGAATGTTCTAACTACGTGCAA 59.071 36.000 0.00 0.00 0.00 4.08
126 127 6.425417 TGATGAATGTTCTAACTACGTGCAAA 59.575 34.615 0.00 0.00 0.00 3.68
127 128 6.606234 TGAATGTTCTAACTACGTGCAAAA 57.394 33.333 0.00 0.00 0.00 2.44
128 129 7.197071 TGAATGTTCTAACTACGTGCAAAAT 57.803 32.000 0.00 0.00 0.00 1.82
129 130 7.644490 TGAATGTTCTAACTACGTGCAAAATT 58.356 30.769 0.00 0.00 0.00 1.82
130 131 8.132362 TGAATGTTCTAACTACGTGCAAAATTT 58.868 29.630 0.00 0.00 0.00 1.82
131 132 8.502161 AATGTTCTAACTACGTGCAAAATTTC 57.498 30.769 0.00 0.00 0.00 2.17
132 133 7.017498 TGTTCTAACTACGTGCAAAATTTCA 57.983 32.000 0.00 0.00 0.00 2.69
133 134 7.129622 TGTTCTAACTACGTGCAAAATTTCAG 58.870 34.615 0.00 0.00 0.00 3.02
134 135 6.236017 TCTAACTACGTGCAAAATTTCAGG 57.764 37.500 0.00 0.00 0.00 3.86
135 136 4.911514 AACTACGTGCAAAATTTCAGGT 57.088 36.364 0.00 9.35 35.74 4.00
136 137 4.911514 ACTACGTGCAAAATTTCAGGTT 57.088 36.364 9.60 0.00 33.91 3.50
137 138 4.606961 ACTACGTGCAAAATTTCAGGTTG 58.393 39.130 9.60 10.03 33.91 3.77
138 139 3.791973 ACGTGCAAAATTTCAGGTTGA 57.208 38.095 0.00 0.00 0.00 3.18
139 140 4.116747 ACGTGCAAAATTTCAGGTTGAA 57.883 36.364 0.00 0.00 34.03 2.69
152 153 7.447374 TTTCAGGTTGAAATGATATTCGTGT 57.553 32.000 0.36 0.00 41.02 4.49
153 154 8.554835 TTTCAGGTTGAAATGATATTCGTGTA 57.445 30.769 0.36 0.00 41.02 2.90
154 155 7.770801 TCAGGTTGAAATGATATTCGTGTAG 57.229 36.000 0.00 0.00 31.80 2.74
155 156 6.761242 TCAGGTTGAAATGATATTCGTGTAGG 59.239 38.462 0.00 0.00 31.80 3.18
156 157 6.538742 CAGGTTGAAATGATATTCGTGTAGGT 59.461 38.462 0.00 0.00 31.80 3.08
157 158 6.761714 AGGTTGAAATGATATTCGTGTAGGTC 59.238 38.462 0.00 0.00 31.80 3.85
158 159 6.761714 GGTTGAAATGATATTCGTGTAGGTCT 59.238 38.462 0.00 0.00 31.80 3.85
159 160 7.254455 GGTTGAAATGATATTCGTGTAGGTCTG 60.254 40.741 0.00 0.00 31.80 3.51
160 161 6.280643 TGAAATGATATTCGTGTAGGTCTGG 58.719 40.000 0.00 0.00 31.80 3.86
161 162 4.873746 ATGATATTCGTGTAGGTCTGGG 57.126 45.455 0.00 0.00 0.00 4.45
162 163 2.364324 TGATATTCGTGTAGGTCTGGGC 59.636 50.000 0.00 0.00 0.00 5.36
163 164 1.855295 TATTCGTGTAGGTCTGGGCA 58.145 50.000 0.00 0.00 0.00 5.36
164 165 0.981183 ATTCGTGTAGGTCTGGGCAA 59.019 50.000 0.00 0.00 0.00 4.52
165 166 0.759959 TTCGTGTAGGTCTGGGCAAA 59.240 50.000 0.00 0.00 0.00 3.68
166 167 0.034337 TCGTGTAGGTCTGGGCAAAC 59.966 55.000 0.00 0.00 0.00 2.93
167 168 0.250124 CGTGTAGGTCTGGGCAAACA 60.250 55.000 0.00 0.00 0.00 2.83
168 169 1.812324 CGTGTAGGTCTGGGCAAACAA 60.812 52.381 0.00 0.00 0.00 2.83
169 170 2.303175 GTGTAGGTCTGGGCAAACAAA 58.697 47.619 0.00 0.00 0.00 2.83
170 171 2.691011 GTGTAGGTCTGGGCAAACAAAA 59.309 45.455 0.00 0.00 0.00 2.44
171 172 3.320826 GTGTAGGTCTGGGCAAACAAAAT 59.679 43.478 0.00 0.00 0.00 1.82
172 173 3.964031 TGTAGGTCTGGGCAAACAAAATT 59.036 39.130 0.00 0.00 0.00 1.82
173 174 3.473923 AGGTCTGGGCAAACAAAATTG 57.526 42.857 0.00 0.00 0.00 2.32
174 175 3.037549 AGGTCTGGGCAAACAAAATTGA 58.962 40.909 0.00 0.00 31.84 2.57
175 176 3.647590 AGGTCTGGGCAAACAAAATTGAT 59.352 39.130 0.00 0.00 31.84 2.57
176 177 3.747529 GGTCTGGGCAAACAAAATTGATG 59.252 43.478 0.00 0.44 31.84 3.07
177 178 3.187022 GTCTGGGCAAACAAAATTGATGC 59.813 43.478 15.35 15.35 40.83 3.91
178 179 3.071312 TCTGGGCAAACAAAATTGATGCT 59.929 39.130 19.76 0.00 41.10 3.79
179 180 3.401182 TGGGCAAACAAAATTGATGCTC 58.599 40.909 19.76 18.07 41.72 4.26
180 181 2.743664 GGGCAAACAAAATTGATGCTCC 59.256 45.455 19.76 16.61 41.10 4.70
181 182 3.401182 GGCAAACAAAATTGATGCTCCA 58.599 40.909 19.76 0.00 41.10 3.86
182 183 3.814283 GGCAAACAAAATTGATGCTCCAA 59.186 39.130 19.76 0.00 41.10 3.53
183 184 4.275443 GGCAAACAAAATTGATGCTCCAAA 59.725 37.500 19.76 0.00 41.10 3.28
184 185 5.221009 GGCAAACAAAATTGATGCTCCAAAA 60.221 36.000 19.76 0.00 41.10 2.44
185 186 6.440436 GCAAACAAAATTGATGCTCCAAAAT 58.560 32.000 15.98 0.00 39.55 1.82
186 187 6.361214 GCAAACAAAATTGATGCTCCAAAATG 59.639 34.615 15.98 0.00 39.55 2.32
187 188 5.616488 ACAAAATTGATGCTCCAAAATGC 57.384 34.783 0.00 0.00 0.00 3.56
188 189 5.310451 ACAAAATTGATGCTCCAAAATGCT 58.690 33.333 0.00 0.00 0.00 3.79
189 190 5.766174 ACAAAATTGATGCTCCAAAATGCTT 59.234 32.000 0.00 0.00 0.00 3.91
190 191 6.072893 ACAAAATTGATGCTCCAAAATGCTTC 60.073 34.615 0.00 0.00 35.02 3.86
191 192 3.598019 TTGATGCTCCAAAATGCTTCC 57.402 42.857 0.00 0.00 33.98 3.46
192 193 2.527497 TGATGCTCCAAAATGCTTCCA 58.473 42.857 0.00 0.00 33.98 3.53
193 194 2.898612 TGATGCTCCAAAATGCTTCCAA 59.101 40.909 0.00 0.00 33.98 3.53
194 195 3.056393 TGATGCTCCAAAATGCTTCCAAG 60.056 43.478 0.00 0.00 33.98 3.61
195 196 2.596346 TGCTCCAAAATGCTTCCAAGA 58.404 42.857 0.00 0.00 0.00 3.02
196 197 2.964464 TGCTCCAAAATGCTTCCAAGAA 59.036 40.909 0.00 0.00 0.00 2.52
197 198 3.579586 TGCTCCAAAATGCTTCCAAGAAT 59.420 39.130 0.00 0.00 0.00 2.40
198 199 4.771577 TGCTCCAAAATGCTTCCAAGAATA 59.228 37.500 0.00 0.00 0.00 1.75
199 200 5.105635 TGCTCCAAAATGCTTCCAAGAATAG 60.106 40.000 0.00 0.00 0.00 1.73
200 201 5.105595 GCTCCAAAATGCTTCCAAGAATAGT 60.106 40.000 0.00 0.00 0.00 2.12
201 202 6.515272 TCCAAAATGCTTCCAAGAATAGTC 57.485 37.500 0.00 0.00 0.00 2.59
202 203 6.248433 TCCAAAATGCTTCCAAGAATAGTCT 58.752 36.000 0.00 0.00 34.72 3.24
203 204 6.721208 TCCAAAATGCTTCCAAGAATAGTCTT 59.279 34.615 0.00 0.00 45.36 3.01
204 205 7.233348 TCCAAAATGCTTCCAAGAATAGTCTTT 59.767 33.333 1.94 0.00 41.55 2.52
205 206 7.874528 CCAAAATGCTTCCAAGAATAGTCTTTT 59.125 33.333 1.94 0.00 41.55 2.27
206 207 9.264719 CAAAATGCTTCCAAGAATAGTCTTTTT 57.735 29.630 1.94 0.00 41.55 1.94
207 208 8.822652 AAATGCTTCCAAGAATAGTCTTTTTG 57.177 30.769 1.94 0.00 41.55 2.44
208 209 6.331369 TGCTTCCAAGAATAGTCTTTTTGG 57.669 37.500 1.94 2.82 41.55 3.28
209 210 6.068010 TGCTTCCAAGAATAGTCTTTTTGGA 58.932 36.000 7.79 7.79 41.55 3.53
210 211 6.016276 TGCTTCCAAGAATAGTCTTTTTGGAC 60.016 38.462 10.80 3.27 41.55 4.02
211 212 6.570571 GCTTCCAAGAATAGTCTTTTTGGACC 60.571 42.308 10.80 3.51 41.55 4.46
212 213 5.947663 TCCAAGAATAGTCTTTTTGGACCA 58.052 37.500 7.79 0.00 41.55 4.02
213 214 6.552008 TCCAAGAATAGTCTTTTTGGACCAT 58.448 36.000 7.79 0.00 41.55 3.55
214 215 7.010160 TCCAAGAATAGTCTTTTTGGACCATT 58.990 34.615 7.79 0.00 41.55 3.16
215 216 7.039784 TCCAAGAATAGTCTTTTTGGACCATTG 60.040 37.037 7.79 0.00 41.55 2.82
216 217 7.039784 CCAAGAATAGTCTTTTTGGACCATTGA 60.040 37.037 1.94 0.00 41.55 2.57
217 218 8.526147 CAAGAATAGTCTTTTTGGACCATTGAT 58.474 33.333 1.94 0.00 41.55 2.57
218 219 8.655935 AGAATAGTCTTTTTGGACCATTGATT 57.344 30.769 0.00 0.00 36.95 2.57
219 220 9.093458 AGAATAGTCTTTTTGGACCATTGATTT 57.907 29.630 0.00 0.00 36.95 2.17
220 221 9.710900 GAATAGTCTTTTTGGACCATTGATTTT 57.289 29.630 0.00 0.00 36.95 1.82
242 243 3.125520 TTTTTGCCCAGACCTCCAC 57.874 52.632 0.00 0.00 0.00 4.02
243 244 0.821711 TTTTTGCCCAGACCTCCACG 60.822 55.000 0.00 0.00 0.00 4.94
244 245 1.701031 TTTTGCCCAGACCTCCACGA 61.701 55.000 0.00 0.00 0.00 4.35
245 246 1.701031 TTTGCCCAGACCTCCACGAA 61.701 55.000 0.00 0.00 0.00 3.85
246 247 1.488705 TTGCCCAGACCTCCACGAAT 61.489 55.000 0.00 0.00 0.00 3.34
247 248 1.450312 GCCCAGACCTCCACGAATG 60.450 63.158 0.00 0.00 0.00 2.67
248 249 1.983224 CCCAGACCTCCACGAATGT 59.017 57.895 0.00 0.00 0.00 2.71
249 250 0.108138 CCCAGACCTCCACGAATGTC 60.108 60.000 0.00 0.00 0.00 3.06
250 251 0.608130 CCAGACCTCCACGAATGTCA 59.392 55.000 0.00 0.00 0.00 3.58
251 252 1.208052 CCAGACCTCCACGAATGTCAT 59.792 52.381 0.00 0.00 0.00 3.06
252 253 2.355108 CCAGACCTCCACGAATGTCATT 60.355 50.000 0.00 0.00 0.00 2.57
253 254 3.338249 CAGACCTCCACGAATGTCATTT 58.662 45.455 0.00 0.00 0.00 2.32
254 255 3.372206 CAGACCTCCACGAATGTCATTTC 59.628 47.826 0.00 0.00 0.00 2.17
255 256 3.007940 AGACCTCCACGAATGTCATTTCA 59.992 43.478 0.00 0.00 0.00 2.69
256 257 3.750371 ACCTCCACGAATGTCATTTCAA 58.250 40.909 0.00 0.00 0.00 2.69
257 258 3.502211 ACCTCCACGAATGTCATTTCAAC 59.498 43.478 0.00 0.00 0.00 3.18
258 259 3.753272 CCTCCACGAATGTCATTTCAACT 59.247 43.478 0.00 0.00 0.00 3.16
259 260 4.216257 CCTCCACGAATGTCATTTCAACTT 59.784 41.667 0.00 0.00 0.00 2.66
260 261 5.107109 TCCACGAATGTCATTTCAACTTG 57.893 39.130 0.00 0.00 0.00 3.16
261 262 4.819088 TCCACGAATGTCATTTCAACTTGA 59.181 37.500 0.00 0.00 0.00 3.02
262 263 5.298026 TCCACGAATGTCATTTCAACTTGAA 59.702 36.000 0.00 0.00 34.03 2.69
275 276 7.582435 TTTCAACTTGAAATTTTACACGCAA 57.418 28.000 12.12 0.00 41.02 4.85
276 277 7.763172 TTCAACTTGAAATTTTACACGCAAT 57.237 28.000 1.47 0.00 32.71 3.56
277 278 7.763172 TCAACTTGAAATTTTACACGCAATT 57.237 28.000 0.00 0.00 0.00 2.32
278 279 8.858003 TCAACTTGAAATTTTACACGCAATTA 57.142 26.923 0.00 0.00 0.00 1.40
279 280 8.963130 TCAACTTGAAATTTTACACGCAATTAG 58.037 29.630 0.00 0.00 0.00 1.73
280 281 8.963130 CAACTTGAAATTTTACACGCAATTAGA 58.037 29.630 0.00 0.00 0.00 2.10
281 282 8.728088 ACTTGAAATTTTACACGCAATTAGAG 57.272 30.769 0.00 0.00 0.00 2.43
282 283 8.564574 ACTTGAAATTTTACACGCAATTAGAGA 58.435 29.630 0.00 0.00 0.00 3.10
283 284 9.393249 CTTGAAATTTTACACGCAATTAGAGAA 57.607 29.630 0.00 0.00 0.00 2.87
284 285 9.906660 TTGAAATTTTACACGCAATTAGAGAAT 57.093 25.926 0.00 0.00 0.00 2.40
285 286 9.906660 TGAAATTTTACACGCAATTAGAGAATT 57.093 25.926 0.00 0.00 35.56 2.17
294 295 8.677300 ACACGCAATTAGAGAATTTATCAATGT 58.323 29.630 0.00 0.00 32.73 2.71
295 296 9.507280 CACGCAATTAGAGAATTTATCAATGTT 57.493 29.630 0.00 0.00 32.73 2.71
296 297 9.722056 ACGCAATTAGAGAATTTATCAATGTTC 57.278 29.630 0.00 0.00 32.73 3.18
297 298 9.720667 CGCAATTAGAGAATTTATCAATGTTCA 57.279 29.630 0.00 0.00 32.73 3.18
361 362 5.858159 TTTTCAATTTTACTGTTCGTGCG 57.142 34.783 0.00 0.00 0.00 5.34
362 363 3.529634 TCAATTTTACTGTTCGTGCGG 57.470 42.857 0.00 0.00 0.00 5.69
363 364 2.224549 TCAATTTTACTGTTCGTGCGGG 59.775 45.455 0.00 0.00 0.00 6.13
364 365 2.172851 ATTTTACTGTTCGTGCGGGA 57.827 45.000 0.00 0.00 0.00 5.14
365 366 1.504359 TTTTACTGTTCGTGCGGGAG 58.496 50.000 0.00 0.00 0.00 4.30
366 367 0.390124 TTTACTGTTCGTGCGGGAGT 59.610 50.000 0.00 0.00 0.00 3.85
367 368 1.246649 TTACTGTTCGTGCGGGAGTA 58.753 50.000 0.00 0.00 0.00 2.59
368 369 1.466856 TACTGTTCGTGCGGGAGTAT 58.533 50.000 0.00 0.00 0.00 2.12
369 370 1.466856 ACTGTTCGTGCGGGAGTATA 58.533 50.000 0.00 0.00 0.00 1.47
370 371 2.029623 ACTGTTCGTGCGGGAGTATAT 58.970 47.619 0.00 0.00 0.00 0.86
371 372 2.223735 ACTGTTCGTGCGGGAGTATATG 60.224 50.000 0.00 0.00 0.00 1.78
372 373 2.025898 TGTTCGTGCGGGAGTATATGA 58.974 47.619 0.00 0.00 0.00 2.15
373 374 2.034179 TGTTCGTGCGGGAGTATATGAG 59.966 50.000 0.00 0.00 0.00 2.90
374 375 0.596577 TCGTGCGGGAGTATATGAGC 59.403 55.000 0.00 0.00 0.00 4.26
375 376 0.598562 CGTGCGGGAGTATATGAGCT 59.401 55.000 0.00 0.00 0.00 4.09
376 377 1.401670 CGTGCGGGAGTATATGAGCTC 60.402 57.143 6.82 6.82 0.00 4.09
377 378 0.881796 TGCGGGAGTATATGAGCTCG 59.118 55.000 9.64 0.00 32.83 5.03
378 379 0.171455 GCGGGAGTATATGAGCTCGG 59.829 60.000 9.64 0.00 32.83 4.63
379 380 0.811915 CGGGAGTATATGAGCTCGGG 59.188 60.000 9.64 0.00 32.83 5.14
380 381 1.613520 CGGGAGTATATGAGCTCGGGA 60.614 57.143 9.64 0.00 32.83 5.14
381 382 2.741145 GGGAGTATATGAGCTCGGGAT 58.259 52.381 9.64 4.70 32.83 3.85
382 383 2.691011 GGGAGTATATGAGCTCGGGATC 59.309 54.545 9.64 0.00 32.83 3.36
383 384 3.357203 GGAGTATATGAGCTCGGGATCA 58.643 50.000 5.33 5.33 42.27 2.92
384 385 3.764434 GGAGTATATGAGCTCGGGATCAA 59.236 47.826 7.61 0.00 41.37 2.57
385 386 4.220821 GGAGTATATGAGCTCGGGATCAAA 59.779 45.833 7.61 0.00 41.37 2.69
386 387 5.105146 GGAGTATATGAGCTCGGGATCAAAT 60.105 44.000 7.61 0.00 41.37 2.32
387 388 6.096987 GGAGTATATGAGCTCGGGATCAAATA 59.903 42.308 7.61 0.00 41.37 1.40
388 389 6.868622 AGTATATGAGCTCGGGATCAAATAC 58.131 40.000 7.61 7.61 41.37 1.89
389 390 6.665680 AGTATATGAGCTCGGGATCAAATACT 59.334 38.462 7.61 9.49 41.37 2.12
390 391 3.735237 TGAGCTCGGGATCAAATACTC 57.265 47.619 0.00 0.00 34.74 2.59
391 392 2.365617 TGAGCTCGGGATCAAATACTCC 59.634 50.000 0.00 0.00 34.74 3.85
392 393 2.365617 GAGCTCGGGATCAAATACTCCA 59.634 50.000 0.00 0.00 32.90 3.86
393 394 2.975489 AGCTCGGGATCAAATACTCCAT 59.025 45.455 0.00 0.00 32.90 3.41
394 395 3.070018 GCTCGGGATCAAATACTCCATG 58.930 50.000 0.00 0.00 32.90 3.66
395 396 3.495100 GCTCGGGATCAAATACTCCATGT 60.495 47.826 0.00 0.00 32.90 3.21
396 397 4.310769 CTCGGGATCAAATACTCCATGTC 58.689 47.826 0.00 0.00 32.90 3.06
397 398 3.071023 TCGGGATCAAATACTCCATGTCC 59.929 47.826 0.00 0.00 32.90 4.02
398 399 3.181455 CGGGATCAAATACTCCATGTCCA 60.181 47.826 0.00 0.00 32.90 4.02
399 400 4.505566 CGGGATCAAATACTCCATGTCCAT 60.506 45.833 0.00 0.00 32.90 3.41
400 401 5.279960 CGGGATCAAATACTCCATGTCCATA 60.280 44.000 0.00 0.00 32.90 2.74
401 402 6.542821 GGGATCAAATACTCCATGTCCATAA 58.457 40.000 0.00 0.00 32.90 1.90
402 403 6.656693 GGGATCAAATACTCCATGTCCATAAG 59.343 42.308 0.00 0.00 32.90 1.73
403 404 6.656693 GGATCAAATACTCCATGTCCATAAGG 59.343 42.308 0.00 0.00 0.00 2.69
450 451 1.442769 GTGATTCAGGCTCGCTTGAA 58.557 50.000 16.96 16.96 44.13 2.69
466 467 3.254892 CTTGAACCCTTCGAAGCTAGAC 58.745 50.000 19.99 9.58 0.00 2.59
467 468 2.244695 TGAACCCTTCGAAGCTAGACA 58.755 47.619 19.99 11.85 0.00 3.41
484 485 2.241176 AGACAAGTTGACCCCAAACTCA 59.759 45.455 10.54 0.00 33.49 3.41
488 489 1.963515 AGTTGACCCCAAACTCATTGC 59.036 47.619 0.00 0.00 37.73 3.56
511 512 3.424703 CTCAACCCACCATCTTTCATGT 58.575 45.455 0.00 0.00 0.00 3.21
516 517 1.399440 CCACCATCTTTCATGTGCTCG 59.601 52.381 0.00 0.00 0.00 5.03
518 519 2.350804 CACCATCTTTCATGTGCTCGAG 59.649 50.000 8.45 8.45 0.00 4.04
520 521 3.264947 CCATCTTTCATGTGCTCGAGAA 58.735 45.455 18.75 1.15 0.00 2.87
521 522 3.063180 CCATCTTTCATGTGCTCGAGAAC 59.937 47.826 17.28 17.28 0.00 3.01
527 528 3.081804 TCATGTGCTCGAGAACTCAGTA 58.918 45.455 24.00 3.95 0.00 2.74
535 536 4.156664 TCGAGAACTCAGTAAACTTCCG 57.843 45.455 2.78 0.00 0.00 4.30
536 537 3.567164 TCGAGAACTCAGTAAACTTCCGT 59.433 43.478 2.78 0.00 0.00 4.69
542 543 5.232610 ACTCAGTAAACTTCCGTATCGAG 57.767 43.478 0.00 0.00 0.00 4.04
555 556 1.022735 TATCGAGCTTCGGTCTCCAC 58.977 55.000 5.87 0.00 40.88 4.02
556 557 1.994507 ATCGAGCTTCGGTCTCCACG 61.995 60.000 5.87 0.00 40.88 4.94
577 580 3.563261 CGGAGGATATGGGAGTGAGATCT 60.563 52.174 0.00 0.00 0.00 2.75
587 590 3.449018 GGGAGTGAGATCTGTAAGCTTGA 59.551 47.826 9.86 0.00 0.00 3.02
599 602 1.089920 AAGCTTGATGCAAGGCTACG 58.910 50.000 0.00 0.00 45.94 3.51
600 603 0.036010 AGCTTGATGCAAGGCTACGT 60.036 50.000 9.01 0.00 45.94 3.57
604 607 0.894835 TGATGCAAGGCTACGTGAGA 59.105 50.000 0.00 0.00 0.00 3.27
607 610 0.528017 TGCAAGGCTACGTGAGAGAG 59.472 55.000 0.00 0.00 0.00 3.20
619 622 0.393673 TGAGAGAGTGCGAGAGAGGG 60.394 60.000 0.00 0.00 0.00 4.30
625 628 3.071206 TGCGAGAGAGGGTGAGGC 61.071 66.667 0.00 0.00 0.00 4.70
638 641 1.381191 TGAGGCTCGAGCACCCATA 60.381 57.895 36.27 14.71 44.36 2.74
668 671 3.777016 GACAGTCAGTCTCCGTCAC 57.223 57.895 0.00 0.00 44.09 3.67
669 672 0.952280 GACAGTCAGTCTCCGTCACA 59.048 55.000 0.00 0.00 44.09 3.58
672 675 0.110678 AGTCAGTCTCCGTCACAGGA 59.889 55.000 0.00 0.00 38.80 3.86
674 677 1.546476 GTCAGTCTCCGTCACAGGATT 59.454 52.381 0.00 0.00 39.96 3.01
688 691 0.625849 AGGATTTCCATGCCGACCTT 59.374 50.000 0.00 0.00 38.89 3.50
712 718 9.956640 CTTCTAAATAGAGCAAATAGGATGGAT 57.043 33.333 0.00 0.00 33.21 3.41
733 739 6.266330 TGGATACATGATGAAAAACACACCAA 59.734 34.615 0.00 0.00 46.17 3.67
735 741 7.329226 GGATACATGATGAAAAACACACCAAAG 59.671 37.037 0.00 0.00 0.00 2.77
736 742 6.219417 ACATGATGAAAAACACACCAAAGA 57.781 33.333 0.00 0.00 0.00 2.52
749 755 5.874261 ACACACCAAAGAAGTTGAAAAATGG 59.126 36.000 0.00 0.00 39.87 3.16
781 787 4.335874 TGTTTAGAGGATGAGCGAGTAGTC 59.664 45.833 0.00 0.00 0.00 2.59
821 827 5.406175 TGTTCAAAAACCTTATACGACCGAG 59.594 40.000 0.00 0.00 34.28 4.63
822 828 5.389859 TCAAAAACCTTATACGACCGAGA 57.610 39.130 0.00 0.00 0.00 4.04
823 829 5.782047 TCAAAAACCTTATACGACCGAGAA 58.218 37.500 0.00 0.00 0.00 2.87
829 835 4.033684 CCTTATACGACCGAGAAAGAACG 58.966 47.826 0.00 0.00 0.00 3.95
845 851 3.275143 AGAACGACACAACATGTTGGAA 58.725 40.909 35.20 0.00 45.96 3.53
852 858 6.876789 ACGACACAACATGTTGGAATCTAATA 59.123 34.615 35.20 0.00 45.96 0.98
940 949 9.411801 GAATATGAAAAGGAGAACAAGGAAAAC 57.588 33.333 0.00 0.00 0.00 2.43
1027 1037 2.046892 TCCTGCCTCTTCGCTTGC 60.047 61.111 0.00 0.00 0.00 4.01
1404 1417 1.529713 TTCGACCTTTTGCCCCACC 60.530 57.895 0.00 0.00 0.00 4.61
1454 1467 1.069358 CTCCCCTTATCTTCAGCGTCC 59.931 57.143 0.00 0.00 0.00 4.79
1456 1469 0.876342 CCCTTATCTTCAGCGTCCGC 60.876 60.000 2.94 2.94 42.33 5.54
1475 1488 5.741982 GTCCGCATTTCGCTATTAAACAAAT 59.258 36.000 0.00 0.00 39.08 2.32
1503 1516 1.519455 CATCGCACCTCCCTCGAAC 60.519 63.158 0.00 0.00 35.77 3.95
1508 1521 1.802880 CGCACCTCCCTCGAACAATAG 60.803 57.143 0.00 0.00 0.00 1.73
1517 1530 4.058817 CCCTCGAACAATAGTAGGCATTC 58.941 47.826 0.00 0.00 0.00 2.67
1584 1608 3.739830 GCCATTCATTCATCTGCATTGCA 60.740 43.478 11.50 11.50 36.92 4.08
1593 1617 2.330440 TCTGCATTGCACCGTGATAT 57.670 45.000 7.38 0.00 33.79 1.63
1688 1719 2.158449 GCTTCCTGTGACTTGAACATCG 59.842 50.000 0.00 0.00 0.00 3.84
1711 1742 2.292267 ACTAGAAAGCCATGAATGCCG 58.708 47.619 0.00 0.00 0.00 5.69
1735 1766 3.131709 ACAAGGAGATGGTTCTGTGTG 57.868 47.619 0.00 0.00 30.30 3.82
1740 1771 0.326264 AGATGGTTCTGTGTGCTCCC 59.674 55.000 0.00 0.00 0.00 4.30
1746 1777 0.108585 TTCTGTGTGCTCCCCTGAAC 59.891 55.000 0.00 0.00 0.00 3.18
1762 1807 4.181578 CCTGAACTCGGGTACAATTACTG 58.818 47.826 0.00 0.00 37.62 2.74
1818 1863 2.108168 TCTAGTATGTCCAGCCCACAC 58.892 52.381 0.00 0.00 0.00 3.82
1824 1871 2.198827 TGTCCAGCCCACACAATAAG 57.801 50.000 0.00 0.00 0.00 1.73
1894 1941 4.640201 TGTTTGGCTTAGATATTCCTGCAC 59.360 41.667 0.00 0.00 0.00 4.57
1913 1960 4.164822 CACAAAGGAATTGAGCACGAAT 57.835 40.909 0.00 0.00 41.85 3.34
1956 2138 3.766051 ACCCTTCATTCCATTCTTCTTGC 59.234 43.478 0.00 0.00 0.00 4.01
2016 2198 7.181361 TCATTAATCCTTGTTTTGATCTGGGA 58.819 34.615 0.00 0.00 0.00 4.37
2239 2422 7.288158 GACTGAAGAGTAATACCTATCCAGGTT 59.712 40.741 0.91 0.00 42.14 3.50
2255 2438 1.111277 GGTTGCTGGTCTTGGTTGTT 58.889 50.000 0.00 0.00 0.00 2.83
2372 2603 6.980593 TGTTCCTGTTTAAGAAATGGATGTG 58.019 36.000 0.00 0.00 0.00 3.21
2407 2638 7.747799 GGCATGACAAATAATAGTGAATCGATG 59.252 37.037 0.00 0.00 0.00 3.84
2491 2722 8.367660 AGTATACTGGGTTGGATATAGTGATG 57.632 38.462 4.10 0.00 0.00 3.07
2549 2781 4.996758 GGTGAATTTTTAGCCAGCATGTTT 59.003 37.500 0.00 0.00 0.00 2.83
2574 2815 0.911045 TTCTGAGGAGCCTGCATGGA 60.911 55.000 6.40 0.00 38.35 3.41
2578 2819 1.919600 GAGGAGCCTGCATGGAGGTT 61.920 60.000 31.17 27.18 38.35 3.50
2601 2843 4.475345 ACTCCTCTACTGTCTTGAGTGTT 58.525 43.478 0.00 0.00 32.22 3.32
2602 2844 4.279671 ACTCCTCTACTGTCTTGAGTGTTG 59.720 45.833 0.00 0.00 32.22 3.33
2604 2846 4.893524 TCCTCTACTGTCTTGAGTGTTGAA 59.106 41.667 0.00 0.00 0.00 2.69
2645 2887 1.747355 GGGAAGACATCAATGCAGGTG 59.253 52.381 0.00 0.00 0.00 4.00
2689 2931 7.459486 GCACTCATATACTATATGCACAAAGC 58.541 38.462 10.24 5.92 45.96 3.51
2719 2961 8.186163 TCTTATCAAGCTTAAATTGCACTGATG 58.814 33.333 0.00 0.00 36.56 3.07
2730 2972 4.707030 TTGCACTGATGACAATCATTCC 57.293 40.909 0.00 0.00 41.97 3.01
2741 2983 4.141642 TGACAATCATTCCAGGATCGTGAT 60.142 41.667 16.84 0.48 0.00 3.06
2775 3017 7.552687 TGTCATTTTCTGTTGAGTAAAGTGAGT 59.447 33.333 0.00 0.00 0.00 3.41
2776 3018 8.398665 GTCATTTTCTGTTGAGTAAAGTGAGTT 58.601 33.333 0.00 0.00 0.00 3.01
2789 3031 8.788325 AGTAAAGTGAGTTGTAATATTGGACC 57.212 34.615 0.00 0.00 0.00 4.46
2918 3160 3.853475 GGATTGCATTCCAAACCTCAAG 58.147 45.455 20.32 0.00 41.69 3.02
3040 3282 4.452795 AGAAGGAAAGTAAAAGCGCTCTTC 59.547 41.667 12.06 15.55 0.00 2.87
3043 3285 4.822350 AGGAAAGTAAAAGCGCTCTTCTTT 59.178 37.500 12.06 18.28 35.47 2.52
3079 3321 7.442656 ACATCAATGCCCTATTGTACTACTAC 58.557 38.462 0.00 0.00 45.17 2.73
3089 3333 7.555554 CCCTATTGTACTACTACACACTACTGT 59.444 40.741 0.00 0.00 32.28 3.55
3090 3334 9.605275 CCTATTGTACTACTACACACTACTGTA 57.395 37.037 0.00 0.00 32.28 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.704572 CTCGGGATCAAAAGAGCACTT 58.295 47.619 0.00 0.00 38.05 3.16
6 7 2.680312 TGAGCTCGGGATCAAAAGAG 57.320 50.000 0.00 0.00 34.74 2.85
7 8 4.635223 CATATGAGCTCGGGATCAAAAGA 58.365 43.478 7.61 0.00 41.37 2.52
8 9 3.188048 GCATATGAGCTCGGGATCAAAAG 59.812 47.826 7.61 0.72 41.37 2.27
9 10 3.141398 GCATATGAGCTCGGGATCAAAA 58.859 45.455 7.61 0.00 41.37 2.44
10 11 2.369860 AGCATATGAGCTCGGGATCAAA 59.630 45.455 7.61 0.00 42.18 2.69
11 12 1.973515 AGCATATGAGCTCGGGATCAA 59.026 47.619 7.61 0.00 42.18 2.57
12 13 1.637338 AGCATATGAGCTCGGGATCA 58.363 50.000 5.33 5.33 42.18 2.92
95 96 9.436957 ACGTAGTTAGAACATTCATCAATTTCT 57.563 29.630 0.00 0.00 37.78 2.52
96 97 9.478019 CACGTAGTTAGAACATTCATCAATTTC 57.522 33.333 0.00 0.00 41.61 2.17
97 98 7.962918 GCACGTAGTTAGAACATTCATCAATTT 59.037 33.333 0.00 0.00 41.61 1.82
98 99 7.119116 TGCACGTAGTTAGAACATTCATCAATT 59.881 33.333 0.00 0.00 41.61 2.32
99 100 6.593770 TGCACGTAGTTAGAACATTCATCAAT 59.406 34.615 0.00 0.00 41.61 2.57
100 101 5.929415 TGCACGTAGTTAGAACATTCATCAA 59.071 36.000 0.00 0.00 41.61 2.57
101 102 5.474825 TGCACGTAGTTAGAACATTCATCA 58.525 37.500 0.00 0.00 41.61 3.07
102 103 6.403333 TTGCACGTAGTTAGAACATTCATC 57.597 37.500 0.00 0.00 41.61 2.92
103 104 6.795098 TTTGCACGTAGTTAGAACATTCAT 57.205 33.333 0.00 0.00 41.61 2.57
104 105 6.606234 TTTTGCACGTAGTTAGAACATTCA 57.394 33.333 0.00 0.00 41.61 2.57
105 106 8.502161 AAATTTTGCACGTAGTTAGAACATTC 57.498 30.769 0.00 0.00 41.61 2.67
106 107 8.132362 TGAAATTTTGCACGTAGTTAGAACATT 58.868 29.630 0.00 0.00 41.61 2.71
107 108 7.644490 TGAAATTTTGCACGTAGTTAGAACAT 58.356 30.769 0.00 0.00 41.61 2.71
108 109 7.017498 TGAAATTTTGCACGTAGTTAGAACA 57.983 32.000 0.00 0.00 41.61 3.18
109 110 6.577427 CCTGAAATTTTGCACGTAGTTAGAAC 59.423 38.462 0.00 0.00 41.61 3.01
110 111 6.261381 ACCTGAAATTTTGCACGTAGTTAGAA 59.739 34.615 0.00 0.00 41.61 2.10
111 112 5.761234 ACCTGAAATTTTGCACGTAGTTAGA 59.239 36.000 0.00 0.00 41.61 2.10
112 113 5.997385 ACCTGAAATTTTGCACGTAGTTAG 58.003 37.500 0.00 0.00 41.61 2.34
113 114 6.038382 TCAACCTGAAATTTTGCACGTAGTTA 59.962 34.615 0.00 0.00 41.61 2.24
114 115 4.911514 ACCTGAAATTTTGCACGTAGTT 57.088 36.364 0.00 0.00 41.61 2.24
115 116 5.163602 TTCAACCTGAAATTTTGCACGTAGT 60.164 36.000 0.00 0.00 35.05 2.73
116 117 4.854399 TCAACCTGAAATTTTGCACGTAG 58.146 39.130 0.00 0.00 0.00 3.51
117 118 4.902443 TCAACCTGAAATTTTGCACGTA 57.098 36.364 0.00 0.00 0.00 3.57
118 119 3.791973 TCAACCTGAAATTTTGCACGT 57.208 38.095 0.00 0.00 0.00 4.49
129 130 7.279981 CCTACACGAATATCATTTCAACCTGAA 59.720 37.037 0.00 0.00 34.03 3.02
130 131 6.761242 CCTACACGAATATCATTTCAACCTGA 59.239 38.462 0.00 0.00 0.00 3.86
131 132 6.538742 ACCTACACGAATATCATTTCAACCTG 59.461 38.462 0.00 0.00 0.00 4.00
132 133 6.650120 ACCTACACGAATATCATTTCAACCT 58.350 36.000 0.00 0.00 0.00 3.50
133 134 6.761714 AGACCTACACGAATATCATTTCAACC 59.238 38.462 0.00 0.00 0.00 3.77
134 135 7.254455 CCAGACCTACACGAATATCATTTCAAC 60.254 40.741 0.00 0.00 0.00 3.18
135 136 6.761242 CCAGACCTACACGAATATCATTTCAA 59.239 38.462 0.00 0.00 0.00 2.69
136 137 6.280643 CCAGACCTACACGAATATCATTTCA 58.719 40.000 0.00 0.00 0.00 2.69
137 138 5.696724 CCCAGACCTACACGAATATCATTTC 59.303 44.000 0.00 0.00 0.00 2.17
138 139 5.611374 CCCAGACCTACACGAATATCATTT 58.389 41.667 0.00 0.00 0.00 2.32
139 140 4.503296 GCCCAGACCTACACGAATATCATT 60.503 45.833 0.00 0.00 0.00 2.57
140 141 3.006967 GCCCAGACCTACACGAATATCAT 59.993 47.826 0.00 0.00 0.00 2.45
141 142 2.364324 GCCCAGACCTACACGAATATCA 59.636 50.000 0.00 0.00 0.00 2.15
142 143 2.364324 TGCCCAGACCTACACGAATATC 59.636 50.000 0.00 0.00 0.00 1.63
143 144 2.394632 TGCCCAGACCTACACGAATAT 58.605 47.619 0.00 0.00 0.00 1.28
144 145 1.855295 TGCCCAGACCTACACGAATA 58.145 50.000 0.00 0.00 0.00 1.75
145 146 0.981183 TTGCCCAGACCTACACGAAT 59.019 50.000 0.00 0.00 0.00 3.34
146 147 0.759959 TTTGCCCAGACCTACACGAA 59.240 50.000 0.00 0.00 0.00 3.85
147 148 0.034337 GTTTGCCCAGACCTACACGA 59.966 55.000 0.00 0.00 0.00 4.35
148 149 0.250124 TGTTTGCCCAGACCTACACG 60.250 55.000 0.00 0.00 0.00 4.49
149 150 1.975660 TTGTTTGCCCAGACCTACAC 58.024 50.000 0.00 0.00 0.00 2.90
150 151 2.738587 TTTGTTTGCCCAGACCTACA 57.261 45.000 0.00 0.00 0.00 2.74
151 152 4.038642 TCAATTTTGTTTGCCCAGACCTAC 59.961 41.667 0.00 0.00 0.00 3.18
152 153 4.219115 TCAATTTTGTTTGCCCAGACCTA 58.781 39.130 0.00 0.00 0.00 3.08
153 154 3.037549 TCAATTTTGTTTGCCCAGACCT 58.962 40.909 0.00 0.00 0.00 3.85
154 155 3.467374 TCAATTTTGTTTGCCCAGACC 57.533 42.857 0.00 0.00 0.00 3.85
155 156 3.187022 GCATCAATTTTGTTTGCCCAGAC 59.813 43.478 8.70 0.00 34.61 3.51
156 157 3.071312 AGCATCAATTTTGTTTGCCCAGA 59.929 39.130 13.46 0.00 38.34 3.86
157 158 3.404899 AGCATCAATTTTGTTTGCCCAG 58.595 40.909 13.46 0.00 38.34 4.45
158 159 3.401182 GAGCATCAATTTTGTTTGCCCA 58.599 40.909 13.46 0.00 38.34 5.36
159 160 2.743664 GGAGCATCAATTTTGTTTGCCC 59.256 45.455 13.46 11.50 38.34 5.36
160 161 3.401182 TGGAGCATCAATTTTGTTTGCC 58.599 40.909 13.46 8.11 38.34 4.52
161 162 5.421212 TTTGGAGCATCAATTTTGTTTGC 57.579 34.783 10.77 10.77 38.07 3.68
162 163 6.361214 GCATTTTGGAGCATCAATTTTGTTTG 59.639 34.615 0.00 0.00 36.25 2.93
163 164 6.263617 AGCATTTTGGAGCATCAATTTTGTTT 59.736 30.769 0.00 0.00 36.25 2.83
164 165 5.766174 AGCATTTTGGAGCATCAATTTTGTT 59.234 32.000 0.00 0.00 36.25 2.83
165 166 5.310451 AGCATTTTGGAGCATCAATTTTGT 58.690 33.333 0.00 0.00 36.25 2.83
166 167 5.873179 AGCATTTTGGAGCATCAATTTTG 57.127 34.783 0.00 0.00 36.25 2.44
167 168 5.413523 GGAAGCATTTTGGAGCATCAATTTT 59.586 36.000 0.00 0.00 36.25 1.82
168 169 4.939439 GGAAGCATTTTGGAGCATCAATTT 59.061 37.500 0.00 0.00 36.25 1.82
169 170 4.020039 TGGAAGCATTTTGGAGCATCAATT 60.020 37.500 0.00 0.00 36.25 2.32
170 171 3.516300 TGGAAGCATTTTGGAGCATCAAT 59.484 39.130 0.00 0.00 36.25 2.57
171 172 2.898612 TGGAAGCATTTTGGAGCATCAA 59.101 40.909 0.00 0.00 36.25 2.57
172 173 2.527497 TGGAAGCATTTTGGAGCATCA 58.473 42.857 0.00 0.00 36.25 3.07
173 174 3.194116 TCTTGGAAGCATTTTGGAGCATC 59.806 43.478 0.00 0.00 0.00 3.91
174 175 3.167485 TCTTGGAAGCATTTTGGAGCAT 58.833 40.909 0.00 0.00 0.00 3.79
175 176 2.596346 TCTTGGAAGCATTTTGGAGCA 58.404 42.857 0.00 0.00 0.00 4.26
176 177 3.665745 TTCTTGGAAGCATTTTGGAGC 57.334 42.857 0.00 0.00 0.00 4.70
177 178 6.376581 AGACTATTCTTGGAAGCATTTTGGAG 59.623 38.462 0.00 0.00 0.00 3.86
178 179 6.248433 AGACTATTCTTGGAAGCATTTTGGA 58.752 36.000 0.00 0.00 0.00 3.53
179 180 6.521151 AGACTATTCTTGGAAGCATTTTGG 57.479 37.500 0.00 0.00 0.00 3.28
180 181 8.822652 AAAAGACTATTCTTGGAAGCATTTTG 57.177 30.769 0.00 0.00 41.56 2.44
181 182 9.264719 CAAAAAGACTATTCTTGGAAGCATTTT 57.735 29.630 0.00 0.00 41.56 1.82
182 183 7.874528 CCAAAAAGACTATTCTTGGAAGCATTT 59.125 33.333 0.00 0.00 41.56 2.32
183 184 7.233348 TCCAAAAAGACTATTCTTGGAAGCATT 59.767 33.333 0.00 0.00 41.56 3.56
184 185 6.721208 TCCAAAAAGACTATTCTTGGAAGCAT 59.279 34.615 0.00 0.00 41.56 3.79
185 186 6.016276 GTCCAAAAAGACTATTCTTGGAAGCA 60.016 38.462 3.52 0.00 41.56 3.91
186 187 6.382608 GTCCAAAAAGACTATTCTTGGAAGC 58.617 40.000 3.52 0.00 41.56 3.86
187 188 6.490040 TGGTCCAAAAAGACTATTCTTGGAAG 59.510 38.462 3.52 0.00 41.56 3.46
188 189 6.369629 TGGTCCAAAAAGACTATTCTTGGAA 58.630 36.000 3.52 0.00 41.56 3.53
189 190 5.947663 TGGTCCAAAAAGACTATTCTTGGA 58.052 37.500 0.00 0.00 41.56 3.53
190 191 6.840780 ATGGTCCAAAAAGACTATTCTTGG 57.159 37.500 0.00 0.00 41.56 3.61
191 192 7.885297 TCAATGGTCCAAAAAGACTATTCTTG 58.115 34.615 0.00 0.00 43.60 3.02
192 193 8.655935 ATCAATGGTCCAAAAAGACTATTCTT 57.344 30.769 0.00 0.00 43.60 2.52
193 194 8.655935 AATCAATGGTCCAAAAAGACTATTCT 57.344 30.769 0.00 0.00 43.60 2.40
194 195 9.710900 AAAATCAATGGTCCAAAAAGACTATTC 57.289 29.630 0.00 0.00 43.60 1.75
224 225 0.821711 CGTGGAGGTCTGGGCAAAAA 60.822 55.000 0.00 0.00 0.00 1.94
225 226 1.228124 CGTGGAGGTCTGGGCAAAA 60.228 57.895 0.00 0.00 0.00 2.44
226 227 1.701031 TTCGTGGAGGTCTGGGCAAA 61.701 55.000 0.00 0.00 0.00 3.68
227 228 1.488705 ATTCGTGGAGGTCTGGGCAA 61.489 55.000 0.00 0.00 0.00 4.52
228 229 1.918293 ATTCGTGGAGGTCTGGGCA 60.918 57.895 0.00 0.00 0.00 5.36
229 230 1.450312 CATTCGTGGAGGTCTGGGC 60.450 63.158 0.00 0.00 0.00 5.36
230 231 0.108138 GACATTCGTGGAGGTCTGGG 60.108 60.000 0.00 0.00 0.00 4.45
231 232 0.608130 TGACATTCGTGGAGGTCTGG 59.392 55.000 0.00 0.00 0.00 3.86
232 233 2.680312 ATGACATTCGTGGAGGTCTG 57.320 50.000 0.00 0.00 0.00 3.51
233 234 3.007940 TGAAATGACATTCGTGGAGGTCT 59.992 43.478 0.05 0.00 31.80 3.85
234 235 3.334691 TGAAATGACATTCGTGGAGGTC 58.665 45.455 0.05 0.00 31.80 3.85
235 236 3.417069 TGAAATGACATTCGTGGAGGT 57.583 42.857 0.05 0.00 31.80 3.85
236 237 3.753272 AGTTGAAATGACATTCGTGGAGG 59.247 43.478 0.05 0.00 31.80 4.30
237 238 5.049474 TCAAGTTGAAATGACATTCGTGGAG 60.049 40.000 2.20 0.00 31.80 3.86
238 239 4.819088 TCAAGTTGAAATGACATTCGTGGA 59.181 37.500 2.20 0.00 31.80 4.02
239 240 5.107109 TCAAGTTGAAATGACATTCGTGG 57.893 39.130 2.20 0.00 31.80 4.94
252 253 7.763172 ATTGCGTGTAAAATTTCAAGTTGAA 57.237 28.000 14.35 14.35 34.03 2.69
253 254 7.763172 AATTGCGTGTAAAATTTCAAGTTGA 57.237 28.000 0.08 0.08 0.00 3.18
254 255 8.963130 TCTAATTGCGTGTAAAATTTCAAGTTG 58.037 29.630 0.00 0.00 0.00 3.16
255 256 9.180678 CTCTAATTGCGTGTAAAATTTCAAGTT 57.819 29.630 0.00 0.00 0.00 2.66
256 257 8.564574 TCTCTAATTGCGTGTAAAATTTCAAGT 58.435 29.630 0.00 0.00 0.00 3.16
257 258 8.948853 TCTCTAATTGCGTGTAAAATTTCAAG 57.051 30.769 0.00 0.00 0.00 3.02
258 259 9.906660 ATTCTCTAATTGCGTGTAAAATTTCAA 57.093 25.926 0.00 0.00 0.00 2.69
259 260 9.906660 AATTCTCTAATTGCGTGTAAAATTTCA 57.093 25.926 0.00 0.00 33.97 2.69
268 269 8.677300 ACATTGATAAATTCTCTAATTGCGTGT 58.323 29.630 0.00 0.00 35.46 4.49
269 270 9.507280 AACATTGATAAATTCTCTAATTGCGTG 57.493 29.630 0.00 0.00 35.46 5.34
270 271 9.722056 GAACATTGATAAATTCTCTAATTGCGT 57.278 29.630 0.00 0.00 35.46 5.24
271 272 9.720667 TGAACATTGATAAATTCTCTAATTGCG 57.279 29.630 0.00 0.00 35.46 4.85
338 339 5.230306 CCGCACGAACAGTAAAATTGAAAAA 59.770 36.000 0.00 0.00 0.00 1.94
339 340 4.735822 CCGCACGAACAGTAAAATTGAAAA 59.264 37.500 0.00 0.00 0.00 2.29
340 341 4.283678 CCGCACGAACAGTAAAATTGAAA 58.716 39.130 0.00 0.00 0.00 2.69
341 342 3.304123 CCCGCACGAACAGTAAAATTGAA 60.304 43.478 0.00 0.00 0.00 2.69
342 343 2.224549 CCCGCACGAACAGTAAAATTGA 59.775 45.455 0.00 0.00 0.00 2.57
343 344 2.224549 TCCCGCACGAACAGTAAAATTG 59.775 45.455 0.00 0.00 0.00 2.32
344 345 2.482721 CTCCCGCACGAACAGTAAAATT 59.517 45.455 0.00 0.00 0.00 1.82
345 346 2.073816 CTCCCGCACGAACAGTAAAAT 58.926 47.619 0.00 0.00 0.00 1.82
346 347 1.202557 ACTCCCGCACGAACAGTAAAA 60.203 47.619 0.00 0.00 0.00 1.52
347 348 0.390124 ACTCCCGCACGAACAGTAAA 59.610 50.000 0.00 0.00 0.00 2.01
348 349 1.246649 TACTCCCGCACGAACAGTAA 58.753 50.000 0.00 0.00 0.00 2.24
349 350 1.466856 ATACTCCCGCACGAACAGTA 58.533 50.000 0.00 0.00 0.00 2.74
350 351 1.466856 TATACTCCCGCACGAACAGT 58.533 50.000 0.00 0.00 0.00 3.55
351 352 2.034179 TCATATACTCCCGCACGAACAG 59.966 50.000 0.00 0.00 0.00 3.16
352 353 2.025898 TCATATACTCCCGCACGAACA 58.974 47.619 0.00 0.00 0.00 3.18
353 354 2.662700 CTCATATACTCCCGCACGAAC 58.337 52.381 0.00 0.00 0.00 3.95
354 355 1.000607 GCTCATATACTCCCGCACGAA 60.001 52.381 0.00 0.00 0.00 3.85
355 356 0.596577 GCTCATATACTCCCGCACGA 59.403 55.000 0.00 0.00 0.00 4.35
356 357 0.598562 AGCTCATATACTCCCGCACG 59.401 55.000 0.00 0.00 0.00 5.34
357 358 1.401670 CGAGCTCATATACTCCCGCAC 60.402 57.143 15.40 0.00 0.00 5.34
358 359 0.881796 CGAGCTCATATACTCCCGCA 59.118 55.000 15.40 0.00 0.00 5.69
359 360 0.171455 CCGAGCTCATATACTCCCGC 59.829 60.000 15.40 0.00 0.00 6.13
360 361 0.811915 CCCGAGCTCATATACTCCCG 59.188 60.000 15.40 0.00 0.00 5.14
361 362 2.217510 TCCCGAGCTCATATACTCCC 57.782 55.000 15.40 0.00 0.00 4.30
362 363 3.357203 TGATCCCGAGCTCATATACTCC 58.643 50.000 15.40 0.00 0.00 3.85
363 364 5.392767 TTTGATCCCGAGCTCATATACTC 57.607 43.478 15.40 3.03 0.00 2.59
364 365 6.665680 AGTATTTGATCCCGAGCTCATATACT 59.334 38.462 15.40 10.75 39.60 2.12
365 366 6.868622 AGTATTTGATCCCGAGCTCATATAC 58.131 40.000 15.40 8.79 36.95 1.47
366 367 6.096987 GGAGTATTTGATCCCGAGCTCATATA 59.903 42.308 15.40 0.00 0.00 0.86
367 368 5.105146 GGAGTATTTGATCCCGAGCTCATAT 60.105 44.000 15.40 3.21 0.00 1.78
368 369 4.220821 GGAGTATTTGATCCCGAGCTCATA 59.779 45.833 15.40 0.00 0.00 2.15
369 370 3.007398 GGAGTATTTGATCCCGAGCTCAT 59.993 47.826 15.40 0.00 0.00 2.90
370 371 2.365617 GGAGTATTTGATCCCGAGCTCA 59.634 50.000 15.40 0.00 0.00 4.26
371 372 2.365617 TGGAGTATTTGATCCCGAGCTC 59.634 50.000 2.73 2.73 34.47 4.09
372 373 2.398588 TGGAGTATTTGATCCCGAGCT 58.601 47.619 0.00 0.00 34.47 4.09
373 374 2.910688 TGGAGTATTTGATCCCGAGC 57.089 50.000 0.00 0.00 34.47 5.03
374 375 4.310769 GACATGGAGTATTTGATCCCGAG 58.689 47.826 0.00 0.00 34.47 4.63
375 376 3.071023 GGACATGGAGTATTTGATCCCGA 59.929 47.826 0.00 0.00 34.47 5.14
376 377 3.181455 TGGACATGGAGTATTTGATCCCG 60.181 47.826 0.00 0.00 34.47 5.14
377 378 4.437682 TGGACATGGAGTATTTGATCCC 57.562 45.455 0.00 0.00 34.47 3.85
378 379 6.656693 CCTTATGGACATGGAGTATTTGATCC 59.343 42.308 0.00 0.00 33.86 3.36
379 380 7.453393 TCCTTATGGACATGGAGTATTTGATC 58.547 38.462 0.00 0.00 37.46 2.92
380 381 7.392766 TCCTTATGGACATGGAGTATTTGAT 57.607 36.000 0.00 0.00 37.46 2.57
381 382 6.823286 TCCTTATGGACATGGAGTATTTGA 57.177 37.500 0.00 0.00 37.46 2.69
395 396 6.083098 CACAAAAACATGTGTCCTTATGGA 57.917 37.500 0.00 0.00 44.46 3.41
410 411 0.461163 AAAGGCCGGTGCACAAAAAC 60.461 50.000 20.43 4.42 40.13 2.43
436 437 1.768684 AAGGGTTCAAGCGAGCCTGA 61.769 55.000 4.40 0.00 43.84 3.86
450 451 2.249139 ACTTGTCTAGCTTCGAAGGGT 58.751 47.619 25.77 14.41 0.00 4.34
466 467 3.799917 GCAATGAGTTTGGGGTCAACTTG 60.800 47.826 0.00 0.00 35.75 3.16
467 468 2.365293 GCAATGAGTTTGGGGTCAACTT 59.635 45.455 0.00 0.00 35.75 2.66
484 485 0.324645 GATGGTGGGTTGAGGGCAAT 60.325 55.000 0.00 0.00 36.22 3.56
488 489 1.075374 TGAAAGATGGTGGGTTGAGGG 59.925 52.381 0.00 0.00 0.00 4.30
511 512 4.547532 GAAGTTTACTGAGTTCTCGAGCA 58.452 43.478 7.81 0.00 0.00 4.26
516 517 5.738225 CGATACGGAAGTTTACTGAGTTCTC 59.262 44.000 0.00 0.00 46.40 2.87
518 519 5.634896 TCGATACGGAAGTTTACTGAGTTC 58.365 41.667 0.00 0.00 46.40 3.01
520 521 4.438472 GCTCGATACGGAAGTTTACTGAGT 60.438 45.833 0.00 0.00 46.40 3.41
521 522 4.036352 GCTCGATACGGAAGTTTACTGAG 58.964 47.826 0.00 0.00 46.40 3.35
527 528 2.527100 CGAAGCTCGATACGGAAGTTT 58.473 47.619 0.00 0.00 42.39 2.66
535 536 1.022735 TGGAGACCGAAGCTCGATAC 58.977 55.000 7.07 0.00 43.74 2.24
536 537 1.022735 GTGGAGACCGAAGCTCGATA 58.977 55.000 7.07 0.00 43.74 2.92
542 543 2.182030 CTCCGTGGAGACCGAAGC 59.818 66.667 10.50 0.00 44.53 3.86
555 556 2.294449 TCTCACTCCCATATCCTCCG 57.706 55.000 0.00 0.00 0.00 4.63
556 557 3.768757 CAGATCTCACTCCCATATCCTCC 59.231 52.174 0.00 0.00 0.00 4.30
565 568 3.449018 TCAAGCTTACAGATCTCACTCCC 59.551 47.826 0.00 0.00 0.00 4.30
566 569 4.727507 TCAAGCTTACAGATCTCACTCC 57.272 45.455 0.00 0.00 0.00 3.85
577 580 2.205022 AGCCTTGCATCAAGCTTACA 57.795 45.000 0.00 0.00 45.94 2.41
587 590 1.135915 CTCTCTCACGTAGCCTTGCAT 59.864 52.381 0.00 0.00 0.00 3.96
599 602 0.732571 CCTCTCTCGCACTCTCTCAC 59.267 60.000 0.00 0.00 0.00 3.51
600 603 0.393673 CCCTCTCTCGCACTCTCTCA 60.394 60.000 0.00 0.00 0.00 3.27
604 607 0.679640 CTCACCCTCTCTCGCACTCT 60.680 60.000 0.00 0.00 0.00 3.24
607 610 2.888863 CCTCACCCTCTCTCGCAC 59.111 66.667 0.00 0.00 0.00 5.34
619 622 1.676678 TATGGGTGCTCGAGCCTCAC 61.677 60.000 33.23 25.98 43.37 3.51
625 628 1.751351 TCACTTCTATGGGTGCTCGAG 59.249 52.381 8.45 8.45 33.91 4.04
638 641 5.699097 GACTGACTGTCTACTTCACTTCT 57.301 43.478 9.51 0.00 42.21 2.85
664 667 0.734889 CGGCATGGAAATCCTGTGAC 59.265 55.000 0.44 1.56 36.82 3.67
668 671 0.107017 AGGTCGGCATGGAAATCCTG 60.107 55.000 0.44 0.00 36.82 3.86
669 672 0.625849 AAGGTCGGCATGGAAATCCT 59.374 50.000 0.44 0.00 36.82 3.24
672 675 3.644966 TTAGAAGGTCGGCATGGAAAT 57.355 42.857 0.00 0.00 0.00 2.17
674 677 3.644966 ATTTAGAAGGTCGGCATGGAA 57.355 42.857 0.00 0.00 0.00 3.53
712 718 7.340122 TCTTTGGTGTGTTTTTCATCATGTA 57.660 32.000 0.00 0.00 0.00 2.29
722 728 7.793927 TTTTTCAACTTCTTTGGTGTGTTTT 57.206 28.000 0.00 0.00 35.69 2.43
725 731 5.874261 CCATTTTTCAACTTCTTTGGTGTGT 59.126 36.000 0.00 0.00 35.69 3.72
733 739 5.612725 TGCCTTCCATTTTTCAACTTCTT 57.387 34.783 0.00 0.00 0.00 2.52
749 755 5.449725 GCTCATCCTCTAAACAAATGCCTTC 60.450 44.000 0.00 0.00 0.00 3.46
781 787 0.109342 AACAGAACTCCAGTGCCCAG 59.891 55.000 0.00 0.00 0.00 4.45
821 827 4.035017 CCAACATGTTGTGTCGTTCTTTC 58.965 43.478 31.20 0.00 41.14 2.62
822 828 3.692101 TCCAACATGTTGTGTCGTTCTTT 59.308 39.130 31.20 0.00 41.14 2.52
823 829 3.275143 TCCAACATGTTGTGTCGTTCTT 58.725 40.909 31.20 0.00 41.14 2.52
829 835 9.341899 GTTTATTAGATTCCAACATGTTGTGTC 57.658 33.333 31.20 24.60 41.14 3.67
845 851 8.034313 TCACCCAATAGAGCAGTTTATTAGAT 57.966 34.615 0.00 0.00 0.00 1.98
852 858 3.562176 CCCTTCACCCAATAGAGCAGTTT 60.562 47.826 0.00 0.00 0.00 2.66
925 934 6.451064 TCTTCTTTGTTTTCCTTGTTCTCC 57.549 37.500 0.00 0.00 0.00 3.71
929 938 8.669946 TGTTTTTCTTCTTTGTTTTCCTTGTT 57.330 26.923 0.00 0.00 0.00 2.83
940 949 7.281991 CAAGTCCACTTGTTTTTCTTCTTTG 57.718 36.000 10.78 0.00 46.11 2.77
1475 1488 2.548707 GGAGGTGCGATGCAGATTCATA 60.549 50.000 0.00 0.00 40.08 2.15
1584 1608 2.038557 GCCCCTATCACAATATCACGGT 59.961 50.000 0.00 0.00 0.00 4.83
1593 1617 0.911769 CTCCACAGCCCCTATCACAA 59.088 55.000 0.00 0.00 0.00 3.33
1653 1684 0.110486 GGAAGCACCTCCAAACTGGA 59.890 55.000 0.00 0.00 45.98 3.86
1711 1742 5.049405 CACACAGAACCATCTCCTTGTTTAC 60.049 44.000 0.00 0.00 32.03 2.01
1740 1771 4.181578 CAGTAATTGTACCCGAGTTCAGG 58.818 47.826 0.00 0.00 0.00 3.86
1746 1777 6.262496 TCTCAGATACAGTAATTGTACCCGAG 59.738 42.308 0.00 0.00 44.68 4.63
1762 1807 4.033990 TCACAAGCATCGTCTCAGATAC 57.966 45.455 0.00 0.00 0.00 2.24
1894 1941 6.529463 AAAAATTCGTGCTCAATTCCTTTG 57.471 33.333 0.00 0.00 36.61 2.77
1923 1970 5.338632 TGGAATGAAGGGTAGAAGTACTGA 58.661 41.667 0.00 0.00 0.00 3.41
1924 1971 5.677319 TGGAATGAAGGGTAGAAGTACTG 57.323 43.478 0.00 0.00 0.00 2.74
1935 2117 4.021916 AGCAAGAAGAATGGAATGAAGGG 58.978 43.478 0.00 0.00 0.00 3.95
2016 2198 6.482973 CCAATGTTACCTGATTGCAAAAAGTT 59.517 34.615 1.71 0.00 0.00 2.66
2202 2385 6.942532 TTACTCTTCAGTCATTTGCAAAGT 57.057 33.333 18.19 8.06 33.62 2.66
2239 2422 2.513753 CCATAACAACCAAGACCAGCA 58.486 47.619 0.00 0.00 0.00 4.41
2255 2438 5.997746 GCAAAGCTACTAATGTCATCCCATA 59.002 40.000 0.00 0.00 0.00 2.74
2372 2603 3.698029 ATTTGTCATGCCAATACGAGC 57.302 42.857 0.00 0.00 0.00 5.03
2491 2722 6.383415 AGACTGAAGACGTAAATTCTGACTC 58.617 40.000 16.30 8.27 28.83 3.36
2555 2787 0.911045 TCCATGCAGGCTCCTCAGAA 60.911 55.000 0.00 0.00 37.29 3.02
2560 2801 0.621571 TAACCTCCATGCAGGCTCCT 60.622 55.000 1.32 0.00 36.98 3.69
2578 2819 5.244189 ACACTCAAGACAGTAGAGGAGTA 57.756 43.478 0.00 0.00 34.13 2.59
2601 2843 6.093495 CCTTCGTTATTACCTTTGAGCATTCA 59.907 38.462 0.00 0.00 0.00 2.57
2602 2844 6.458342 CCCTTCGTTATTACCTTTGAGCATTC 60.458 42.308 0.00 0.00 0.00 2.67
2604 2846 4.881850 CCCTTCGTTATTACCTTTGAGCAT 59.118 41.667 0.00 0.00 0.00 3.79
2645 2887 4.979815 AGTGCGCAATTTACTTACCAAAAC 59.020 37.500 14.00 0.00 0.00 2.43
2689 2931 8.025445 AGTGCAATTTAAGCTTGATAAGAACTG 58.975 33.333 9.86 0.00 0.00 3.16
2719 2961 3.797039 TCACGATCCTGGAATGATTGTC 58.203 45.455 0.00 0.00 33.92 3.18
2730 2972 6.908870 TGACATTTTCTAATCACGATCCTG 57.091 37.500 0.00 0.00 0.00 3.86
2768 3010 5.642063 CACGGTCCAATATTACAACTCACTT 59.358 40.000 0.00 0.00 0.00 3.16
2775 3017 6.879276 TGAAAACACGGTCCAATATTACAA 57.121 33.333 0.00 0.00 0.00 2.41
2776 3018 7.455641 AATGAAAACACGGTCCAATATTACA 57.544 32.000 0.00 0.00 0.00 2.41
2820 3062 9.278978 AGTTTGGTCAACACAAGTTTTAAATTT 57.721 25.926 0.00 0.00 37.93 1.82
2821 3063 8.716909 CAGTTTGGTCAACACAAGTTTTAAATT 58.283 29.630 0.00 0.00 37.93 1.82
2822 3064 8.091449 TCAGTTTGGTCAACACAAGTTTTAAAT 58.909 29.630 0.00 0.00 37.93 1.40
2823 3065 7.434492 TCAGTTTGGTCAACACAAGTTTTAAA 58.566 30.769 0.00 0.00 37.93 1.52
2824 3066 6.982852 TCAGTTTGGTCAACACAAGTTTTAA 58.017 32.000 0.00 0.00 37.93 1.52
2825 3067 6.576662 TCAGTTTGGTCAACACAAGTTTTA 57.423 33.333 0.00 0.00 37.93 1.52
2826 3068 5.461032 TCAGTTTGGTCAACACAAGTTTT 57.539 34.783 0.00 0.00 37.93 2.43
2893 3135 5.083122 TGAGGTTTGGAATGCAATCCTTTA 58.917 37.500 21.32 8.04 40.35 1.85
2894 3136 3.903090 TGAGGTTTGGAATGCAATCCTTT 59.097 39.130 21.32 2.99 40.35 3.11
2902 3144 3.391506 AAAGCTTGAGGTTTGGAATGC 57.608 42.857 0.00 0.00 43.21 3.56
2955 3197 3.996150 AAGTGCAGTGGATTTTGAGTG 57.004 42.857 0.00 0.00 0.00 3.51
2992 3234 9.577003 CTGTATTTTTGTTTACTCGTTACAGTC 57.423 33.333 0.00 0.00 32.94 3.51
2996 3238 9.590088 CCTTCTGTATTTTTGTTTACTCGTTAC 57.410 33.333 0.00 0.00 0.00 2.50
2997 3239 9.545105 TCCTTCTGTATTTTTGTTTACTCGTTA 57.455 29.630 0.00 0.00 0.00 3.18
2998 3240 8.441312 TCCTTCTGTATTTTTGTTTACTCGTT 57.559 30.769 0.00 0.00 0.00 3.85
2999 3241 8.441312 TTCCTTCTGTATTTTTGTTTACTCGT 57.559 30.769 0.00 0.00 0.00 4.18
3040 3282 6.974622 GGGCATTGATGTACATAGAAACAAAG 59.025 38.462 8.71 6.70 0.00 2.77
3043 3285 5.754782 AGGGCATTGATGTACATAGAAACA 58.245 37.500 8.71 0.00 0.00 2.83


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.