Multiple sequence alignment - TraesCS2A01G432800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G432800 chr2A 100.000 3853 0 0 1 3853 686169593 686173445 0.000000e+00 7116.0
1 TraesCS2A01G432800 chr2A 94.667 225 7 2 501 724 686170037 686170257 1.020000e-90 344.0
2 TraesCS2A01G432800 chr2A 94.667 225 7 2 445 665 686170093 686170316 1.020000e-90 344.0
3 TraesCS2A01G432800 chr2A 92.169 166 8 2 560 724 686170037 686170198 2.990000e-56 230.0
4 TraesCS2A01G432800 chr2A 92.169 166 8 2 445 606 686170152 686170316 2.990000e-56 230.0
5 TraesCS2A01G432800 chr2A 91.589 107 4 2 619 724 686170037 686170139 4.010000e-30 143.0
6 TraesCS2A01G432800 chr2A 91.589 107 4 2 445 547 686170211 686170316 4.010000e-30 143.0
7 TraesCS2A01G432800 chr2A 100.000 32 0 0 1398 1429 686170952 686170983 4.160000e-05 60.2
8 TraesCS2A01G432800 chr2A 100.000 32 0 0 1360 1391 686170990 686171021 4.160000e-05 60.2
9 TraesCS2A01G432800 chr2B 93.857 1758 66 18 2112 3853 648482139 648483870 0.000000e+00 2610.0
10 TraesCS2A01G432800 chr2B 90.793 1412 59 27 619 1998 648480733 648482105 0.000000e+00 1821.0
11 TraesCS2A01G432800 chr2B 89.529 573 32 15 3 560 648480292 648480851 0.000000e+00 701.0
12 TraesCS2A01G432800 chr2B 98.319 119 2 0 501 619 648480733 648480851 3.900000e-50 209.0
13 TraesCS2A01G432800 chr2B 97.436 117 3 0 560 676 648480733 648480849 2.350000e-47 200.0
14 TraesCS2A01G432800 chr2B 97.872 47 1 0 678 724 648480733 648480779 8.870000e-12 82.4
15 TraesCS2A01G432800 chr2B 93.333 45 3 0 3149 3193 648483121 648483165 2.480000e-07 67.6
16 TraesCS2A01G432800 chr2D 95.367 1036 31 8 2112 3147 543319150 543320168 0.000000e+00 1631.0
17 TraesCS2A01G432800 chr2D 94.608 612 21 2 1398 1998 543318506 543319116 0.000000e+00 937.0
18 TraesCS2A01G432800 chr2D 86.978 814 46 26 619 1391 543317743 543318537 0.000000e+00 861.0
19 TraesCS2A01G432800 chr2D 90.018 561 30 17 3 547 543317298 543317848 0.000000e+00 702.0
20 TraesCS2A01G432800 chr2D 97.170 106 3 0 501 606 543317743 543317848 3.060000e-41 180.0
21 TraesCS2A01G432800 chr2D 96.226 106 4 0 560 665 543317743 543317848 1.420000e-39 174.0
22 TraesCS2A01G432800 chr2D 97.872 47 1 0 678 724 543317743 543317789 8.870000e-12 82.4
23 TraesCS2A01G432800 chr5D 98.214 56 1 0 2058 2113 87191298 87191243 8.810000e-17 99.0
24 TraesCS2A01G432800 chr5D 95.082 61 3 0 2053 2113 228063465 228063525 3.170000e-16 97.1
25 TraesCS2A01G432800 chr3B 98.214 56 1 0 2058 2113 378134873 378134818 8.810000e-17 99.0
26 TraesCS2A01G432800 chr3B 86.842 76 6 3 2043 2118 501416950 501417021 8.870000e-12 82.4
27 TraesCS2A01G432800 chr7A 95.161 62 1 2 2052 2113 247068347 247068406 3.170000e-16 97.1
28 TraesCS2A01G432800 chr4A 98.182 55 1 0 2059 2113 734987405 734987351 3.170000e-16 97.1
29 TraesCS2A01G432800 chr4A 94.915 59 2 1 2056 2114 520088054 520087997 1.470000e-14 91.6
30 TraesCS2A01G432800 chr6D 95.082 61 2 1 2056 2116 161140617 161140558 1.140000e-15 95.3
31 TraesCS2A01G432800 chr3D 96.491 57 2 0 2057 2113 567374231 567374287 1.140000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G432800 chr2A 686169593 686173445 3852 False 963.377778 7116 95.205556 1 3853 9 chr2A.!!$F1 3852
1 TraesCS2A01G432800 chr2B 648480292 648483870 3578 False 813.000000 2610 94.448429 3 3853 7 chr2B.!!$F1 3850
2 TraesCS2A01G432800 chr2D 543317298 543320168 2870 False 652.485714 1631 94.034143 3 3147 7 chr2D.!!$F1 3144

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
178 182 0.234884 GTTGGGTTTCAACGCTCTCG 59.765 55.0 8.09 0.0 45.1 4.04 F
2015 2085 0.037326 AATTCTCGCTCACTCGCCAA 60.037 50.0 0.00 0.0 0.0 4.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2098 2168 0.034896 CCTAGTTGTGCTCGGTGGTT 59.965 55.0 0.0 0.0 0.00 3.67 R
3478 3552 0.911045 TTCTGAGGAGCCTGCATGGA 60.911 55.0 6.4 0.0 38.35 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.884280 CCACTCTTTTCACTTGGTTAATCT 57.116 37.500 0.00 0.00 0.00 2.40
88 92 3.756117 AGTTTTGGAACTTCTGCTAGGG 58.244 45.455 0.00 0.00 43.48 3.53
89 93 3.394606 AGTTTTGGAACTTCTGCTAGGGA 59.605 43.478 0.00 0.00 43.48 4.20
125 129 3.009916 ACAGAAGGAATCAAGGAGCATGT 59.990 43.478 0.00 0.00 0.00 3.21
178 182 0.234884 GTTGGGTTTCAACGCTCTCG 59.765 55.000 8.09 0.00 45.10 4.04
203 208 1.069227 CGATCGATGTAGGCACGATGA 60.069 52.381 10.26 0.00 44.73 2.92
208 213 2.736978 GATGTAGGCACGATGAGAGTG 58.263 52.381 0.00 0.00 42.15 3.51
213 218 1.827344 AGGCACGATGAGAGTGATTCA 59.173 47.619 0.07 0.00 41.83 2.57
255 260 3.199677 TCCGTTTTCTTCTTCTTTGCGA 58.800 40.909 0.00 0.00 0.00 5.10
262 267 7.550494 GTTTTCTTCTTCTTTGCGAAATTGAG 58.450 34.615 0.00 0.00 0.00 3.02
263 268 6.377327 TTCTTCTTCTTTGCGAAATTGAGT 57.623 33.333 0.00 0.00 0.00 3.41
275 280 3.363378 CGAAATTGAGTGTGTGCTCTCAC 60.363 47.826 11.90 11.90 42.66 3.51
285 290 2.225019 GTGTGCTCTCACCATGAAACTG 59.775 50.000 0.00 0.00 42.46 3.16
298 303 0.868406 GAAACTGCAGGAGAACACGG 59.132 55.000 19.93 0.00 0.00 4.94
299 304 1.166531 AAACTGCAGGAGAACACGGC 61.167 55.000 19.93 0.00 0.00 5.68
300 305 3.114616 CTGCAGGAGAACACGGCG 61.115 66.667 5.57 4.80 0.00 6.46
339 344 2.015736 ACGTTAGATGCAGCTTGAGG 57.984 50.000 11.02 7.96 0.00 3.86
341 346 2.289694 ACGTTAGATGCAGCTTGAGGTT 60.290 45.455 11.02 0.00 0.00 3.50
342 347 2.094894 CGTTAGATGCAGCTTGAGGTTG 59.905 50.000 11.02 0.00 0.00 3.77
397 411 2.308866 ACCCCTTTTCTATCACCACCAG 59.691 50.000 0.00 0.00 0.00 4.00
409 423 2.723746 CACCAGTGTGCCACTTGC 59.276 61.111 5.24 0.00 42.59 4.01
420 434 0.804544 GCCACTTGCGCTACGTATCA 60.805 55.000 9.73 0.00 0.00 2.15
431 446 0.903942 TACGTATCACCCACCAACCC 59.096 55.000 0.00 0.00 0.00 4.11
438 455 0.756294 CACCCACCAACCCTTTTTCC 59.244 55.000 0.00 0.00 0.00 3.13
465 482 4.638304 TCTTAAGCCACACCAGAAAGTAC 58.362 43.478 0.00 0.00 0.00 2.73
466 483 4.347000 TCTTAAGCCACACCAGAAAGTACT 59.653 41.667 0.00 0.00 0.00 2.73
467 484 3.577805 AAGCCACACCAGAAAGTACTT 57.422 42.857 1.12 1.12 0.00 2.24
468 485 4.699925 AAGCCACACCAGAAAGTACTTA 57.300 40.909 8.92 0.00 0.00 2.24
469 486 4.910458 AGCCACACCAGAAAGTACTTAT 57.090 40.909 8.92 0.00 0.00 1.73
470 487 5.242795 AGCCACACCAGAAAGTACTTATT 57.757 39.130 8.92 0.00 0.00 1.40
471 488 5.631119 AGCCACACCAGAAAGTACTTATTT 58.369 37.500 8.92 0.00 0.00 1.40
472 489 5.705905 AGCCACACCAGAAAGTACTTATTTC 59.294 40.000 8.92 2.99 37.00 2.17
473 490 5.106277 GCCACACCAGAAAGTACTTATTTCC 60.106 44.000 8.92 0.00 37.37 3.13
474 491 6.238648 CCACACCAGAAAGTACTTATTTCCT 58.761 40.000 8.92 0.00 37.37 3.36
475 492 6.371825 CCACACCAGAAAGTACTTATTTCCTC 59.628 42.308 8.92 1.44 37.37 3.71
476 493 7.162082 CACACCAGAAAGTACTTATTTCCTCT 58.838 38.462 8.92 3.97 37.37 3.69
477 494 8.311836 CACACCAGAAAGTACTTATTTCCTCTA 58.688 37.037 8.92 0.00 37.37 2.43
478 495 9.047947 ACACCAGAAAGTACTTATTTCCTCTAT 57.952 33.333 8.92 0.00 37.37 1.98
479 496 9.319143 CACCAGAAAGTACTTATTTCCTCTATG 57.681 37.037 8.92 5.42 37.37 2.23
480 497 9.047947 ACCAGAAAGTACTTATTTCCTCTATGT 57.952 33.333 8.92 5.19 37.37 2.29
481 498 9.892130 CCAGAAAGTACTTATTTCCTCTATGTT 57.108 33.333 8.92 0.00 37.37 2.71
484 501 9.989869 GAAAGTACTTATTTCCTCTATGTTTGC 57.010 33.333 8.92 0.00 31.76 3.68
485 502 9.515226 AAAGTACTTATTTCCTCTATGTTTGCA 57.485 29.630 8.92 0.00 0.00 4.08
486 503 9.515226 AAGTACTTATTTCCTCTATGTTTGCAA 57.485 29.630 6.26 0.00 0.00 4.08
487 504 9.686683 AGTACTTATTTCCTCTATGTTTGCAAT 57.313 29.630 0.00 0.00 0.00 3.56
488 505 9.722056 GTACTTATTTCCTCTATGTTTGCAATG 57.278 33.333 0.00 0.00 0.00 2.82
489 506 8.579850 ACTTATTTCCTCTATGTTTGCAATGA 57.420 30.769 0.00 0.00 0.00 2.57
490 507 8.462016 ACTTATTTCCTCTATGTTTGCAATGAC 58.538 33.333 0.00 0.00 0.00 3.06
491 508 8.579850 TTATTTCCTCTATGTTTGCAATGACT 57.420 30.769 0.00 0.00 0.00 3.41
492 509 9.679661 TTATTTCCTCTATGTTTGCAATGACTA 57.320 29.630 0.00 0.00 0.00 2.59
493 510 7.615582 TTTCCTCTATGTTTGCAATGACTAG 57.384 36.000 0.00 0.00 0.00 2.57
494 511 6.544928 TCCTCTATGTTTGCAATGACTAGA 57.455 37.500 0.00 4.40 0.00 2.43
495 512 6.341316 TCCTCTATGTTTGCAATGACTAGAC 58.659 40.000 0.00 0.00 0.00 2.59
496 513 6.155221 TCCTCTATGTTTGCAATGACTAGACT 59.845 38.462 0.00 0.00 0.00 3.24
497 514 6.820656 CCTCTATGTTTGCAATGACTAGACTT 59.179 38.462 0.00 0.00 0.00 3.01
498 515 7.981789 CCTCTATGTTTGCAATGACTAGACTTA 59.018 37.037 0.00 0.00 0.00 2.24
499 516 9.371136 CTCTATGTTTGCAATGACTAGACTTAA 57.629 33.333 0.00 0.00 0.00 1.85
500 517 9.151471 TCTATGTTTGCAATGACTAGACTTAAC 57.849 33.333 0.00 0.00 0.00 2.01
501 518 7.986085 ATGTTTGCAATGACTAGACTTAACT 57.014 32.000 0.00 0.00 0.00 2.24
502 519 7.801716 TGTTTGCAATGACTAGACTTAACTT 57.198 32.000 0.00 0.00 0.00 2.66
503 520 8.896320 TGTTTGCAATGACTAGACTTAACTTA 57.104 30.769 0.00 0.00 0.00 2.24
504 521 9.332502 TGTTTGCAATGACTAGACTTAACTTAA 57.667 29.630 0.00 0.00 0.00 1.85
505 522 9.813080 GTTTGCAATGACTAGACTTAACTTAAG 57.187 33.333 0.00 0.00 41.51 1.85
506 523 7.596749 TGCAATGACTAGACTTAACTTAAGC 57.403 36.000 1.29 2.65 39.39 3.09
507 524 6.594159 TGCAATGACTAGACTTAACTTAAGCC 59.406 38.462 1.29 0.00 39.39 4.35
508 525 6.594159 GCAATGACTAGACTTAACTTAAGCCA 59.406 38.462 1.29 0.00 39.39 4.75
509 526 7.413109 GCAATGACTAGACTTAACTTAAGCCAC 60.413 40.741 1.29 1.95 39.39 5.01
510 527 6.659745 TGACTAGACTTAACTTAAGCCACA 57.340 37.500 1.29 0.04 39.39 4.17
511 528 6.453092 TGACTAGACTTAACTTAAGCCACAC 58.547 40.000 1.29 0.00 39.39 3.82
512 529 5.791666 ACTAGACTTAACTTAAGCCACACC 58.208 41.667 1.29 0.00 39.39 4.16
513 530 4.699925 AGACTTAACTTAAGCCACACCA 57.300 40.909 1.29 0.00 39.39 4.17
514 531 4.642429 AGACTTAACTTAAGCCACACCAG 58.358 43.478 1.29 0.00 39.39 4.00
515 532 4.347000 AGACTTAACTTAAGCCACACCAGA 59.653 41.667 1.29 0.00 39.39 3.86
516 533 5.043737 ACTTAACTTAAGCCACACCAGAA 57.956 39.130 1.29 0.00 39.39 3.02
517 534 5.442391 ACTTAACTTAAGCCACACCAGAAA 58.558 37.500 1.29 0.00 39.39 2.52
518 535 5.531287 ACTTAACTTAAGCCACACCAGAAAG 59.469 40.000 1.29 0.00 39.39 2.62
519 536 3.577805 ACTTAAGCCACACCAGAAAGT 57.422 42.857 1.29 0.00 0.00 2.66
520 537 4.699925 ACTTAAGCCACACCAGAAAGTA 57.300 40.909 1.29 0.00 0.00 2.24
607 624 8.994429 ATTTCCTCTATATTTGCGATGACTAG 57.006 34.615 0.00 0.00 0.00 2.57
608 625 5.955488 TCCTCTATATTTGCGATGACTAGC 58.045 41.667 0.00 0.00 0.00 3.42
609 626 5.712446 TCCTCTATATTTGCGATGACTAGCT 59.288 40.000 0.00 0.00 0.00 3.32
610 627 6.884836 TCCTCTATATTTGCGATGACTAGCTA 59.115 38.462 0.00 0.00 0.00 3.32
611 628 7.066404 TCCTCTATATTTGCGATGACTAGCTAG 59.934 40.741 19.44 19.44 0.00 3.42
612 629 7.066404 CCTCTATATTTGCGATGACTAGCTAGA 59.934 40.741 27.45 6.16 0.00 2.43
613 630 7.753659 TCTATATTTGCGATGACTAGCTAGAC 58.246 38.462 27.45 21.01 0.00 2.59
614 631 4.927978 ATTTGCGATGACTAGCTAGACT 57.072 40.909 27.45 10.62 0.00 3.24
615 632 4.720649 TTTGCGATGACTAGCTAGACTT 57.279 40.909 27.45 18.31 0.00 3.01
616 633 5.830000 TTTGCGATGACTAGCTAGACTTA 57.170 39.130 27.45 6.73 0.00 2.24
617 634 5.425577 TTGCGATGACTAGCTAGACTTAG 57.574 43.478 27.45 18.44 0.00 2.18
630 647 3.336138 AGACTTAGCTAAAGCCACACC 57.664 47.619 7.74 0.00 43.38 4.16
631 648 2.637872 AGACTTAGCTAAAGCCACACCA 59.362 45.455 7.74 0.00 43.38 4.17
632 649 3.003480 GACTTAGCTAAAGCCACACCAG 58.997 50.000 7.74 0.00 43.38 4.00
633 650 2.637872 ACTTAGCTAAAGCCACACCAGA 59.362 45.455 7.74 0.00 43.38 3.86
634 651 3.072476 ACTTAGCTAAAGCCACACCAGAA 59.928 43.478 7.74 0.00 43.38 3.02
635 652 2.656947 AGCTAAAGCCACACCAGAAA 57.343 45.000 0.00 0.00 43.38 2.52
636 653 2.508526 AGCTAAAGCCACACCAGAAAG 58.491 47.619 0.00 0.00 43.38 2.62
637 654 2.158608 AGCTAAAGCCACACCAGAAAGT 60.159 45.455 0.00 0.00 43.38 2.66
638 655 3.072476 AGCTAAAGCCACACCAGAAAGTA 59.928 43.478 0.00 0.00 43.38 2.24
639 656 4.010349 GCTAAAGCCACACCAGAAAGTAT 58.990 43.478 0.00 0.00 34.31 2.12
640 657 4.459337 GCTAAAGCCACACCAGAAAGTATT 59.541 41.667 0.00 0.00 34.31 1.89
641 658 5.646360 GCTAAAGCCACACCAGAAAGTATTA 59.354 40.000 0.00 0.00 34.31 0.98
642 659 6.318900 GCTAAAGCCACACCAGAAAGTATTAT 59.681 38.462 0.00 0.00 34.31 1.28
643 660 7.148069 GCTAAAGCCACACCAGAAAGTATTATT 60.148 37.037 0.00 0.00 34.31 1.40
644 661 7.539034 AAAGCCACACCAGAAAGTATTATTT 57.461 32.000 0.00 0.00 0.00 1.40
645 662 6.759497 AGCCACACCAGAAAGTATTATTTC 57.241 37.500 0.00 0.00 39.09 2.17
646 663 5.652452 AGCCACACCAGAAAGTATTATTTCC 59.348 40.000 0.00 0.00 39.53 3.13
647 664 5.652452 GCCACACCAGAAAGTATTATTTCCT 59.348 40.000 0.00 0.00 39.53 3.36
648 665 6.183360 GCCACACCAGAAAGTATTATTTCCTC 60.183 42.308 0.00 0.00 39.53 3.71
649 666 7.112779 CCACACCAGAAAGTATTATTTCCTCT 58.887 38.462 0.00 0.00 39.53 3.69
650 667 8.265055 CCACACCAGAAAGTATTATTTCCTCTA 58.735 37.037 0.00 0.00 39.53 2.43
651 668 9.838339 CACACCAGAAAGTATTATTTCCTCTAT 57.162 33.333 0.00 0.00 39.53 1.98
664 681 9.950496 ATTATTTCCTCTATATTTGCGATGACT 57.050 29.630 0.00 0.00 0.00 3.41
666 683 8.994429 ATTTCCTCTATATTTGCGATGACTAG 57.006 34.615 0.00 0.00 0.00 2.57
667 684 5.955488 TCCTCTATATTTGCGATGACTAGC 58.045 41.667 0.00 0.00 0.00 3.42
668 685 5.712446 TCCTCTATATTTGCGATGACTAGCT 59.288 40.000 0.00 0.00 0.00 3.32
669 686 6.884836 TCCTCTATATTTGCGATGACTAGCTA 59.115 38.462 0.00 0.00 0.00 3.32
670 687 7.066404 TCCTCTATATTTGCGATGACTAGCTAG 59.934 40.741 19.44 19.44 0.00 3.42
671 688 7.066404 CCTCTATATTTGCGATGACTAGCTAGA 59.934 40.741 27.45 6.16 0.00 2.43
672 689 7.753659 TCTATATTTGCGATGACTAGCTAGAC 58.246 38.462 27.45 21.01 0.00 2.59
673 690 4.927978 ATTTGCGATGACTAGCTAGACT 57.072 40.909 27.45 10.62 0.00 3.24
674 691 4.720649 TTTGCGATGACTAGCTAGACTT 57.279 40.909 27.45 18.31 0.00 3.01
675 692 5.830000 TTTGCGATGACTAGCTAGACTTA 57.170 39.130 27.45 6.73 0.00 2.24
676 693 5.830000 TTGCGATGACTAGCTAGACTTAA 57.170 39.130 27.45 5.99 0.00 1.85
677 694 5.171147 TGCGATGACTAGCTAGACTTAAC 57.829 43.478 27.45 13.77 0.00 2.01
678 695 4.882427 TGCGATGACTAGCTAGACTTAACT 59.118 41.667 27.45 2.31 0.00 2.24
679 696 5.357314 TGCGATGACTAGCTAGACTTAACTT 59.643 40.000 27.45 1.49 0.00 2.66
680 697 6.541278 TGCGATGACTAGCTAGACTTAACTTA 59.459 38.462 27.45 3.80 0.00 2.24
681 698 7.066645 TGCGATGACTAGCTAGACTTAACTTAA 59.933 37.037 27.45 3.06 0.00 1.85
682 699 7.588488 GCGATGACTAGCTAGACTTAACTTAAG 59.412 40.741 27.45 0.00 41.51 1.85
683 700 7.588488 CGATGACTAGCTAGACTTAACTTAAGC 59.412 40.741 27.45 4.64 39.39 3.09
684 701 7.098074 TGACTAGCTAGACTTAACTTAAGCC 57.902 40.000 27.45 0.00 39.39 4.35
685 702 6.662234 TGACTAGCTAGACTTAACTTAAGCCA 59.338 38.462 27.45 0.00 39.39 4.75
686 703 6.865411 ACTAGCTAGACTTAACTTAAGCCAC 58.135 40.000 27.45 1.95 39.39 5.01
687 704 5.740290 AGCTAGACTTAACTTAAGCCACA 57.260 39.130 1.29 0.00 39.39 4.17
688 705 5.480205 AGCTAGACTTAACTTAAGCCACAC 58.520 41.667 1.29 0.00 39.39 3.82
689 706 4.630505 GCTAGACTTAACTTAAGCCACACC 59.369 45.833 1.29 0.00 39.39 4.16
690 707 4.699925 AGACTTAACTTAAGCCACACCA 57.300 40.909 1.29 0.00 39.39 4.17
691 708 4.642429 AGACTTAACTTAAGCCACACCAG 58.358 43.478 1.29 0.00 39.39 4.00
692 709 4.347000 AGACTTAACTTAAGCCACACCAGA 59.653 41.667 1.29 0.00 39.39 3.86
693 710 5.043737 ACTTAACTTAAGCCACACCAGAA 57.956 39.130 1.29 0.00 39.39 3.02
694 711 5.442391 ACTTAACTTAAGCCACACCAGAAA 58.558 37.500 1.29 0.00 39.39 2.52
695 712 5.531287 ACTTAACTTAAGCCACACCAGAAAG 59.469 40.000 1.29 0.00 39.39 2.62
696 713 3.577805 ACTTAAGCCACACCAGAAAGT 57.422 42.857 1.29 0.00 0.00 2.66
697 714 4.699925 ACTTAAGCCACACCAGAAAGTA 57.300 40.909 1.29 0.00 0.00 2.24
698 715 5.242795 ACTTAAGCCACACCAGAAAGTAT 57.757 39.130 1.29 0.00 0.00 2.12
699 716 5.631119 ACTTAAGCCACACCAGAAAGTATT 58.369 37.500 1.29 0.00 0.00 1.89
700 717 6.775708 ACTTAAGCCACACCAGAAAGTATTA 58.224 36.000 1.29 0.00 0.00 0.98
701 718 7.402862 ACTTAAGCCACACCAGAAAGTATTAT 58.597 34.615 1.29 0.00 0.00 1.28
702 719 7.888546 ACTTAAGCCACACCAGAAAGTATTATT 59.111 33.333 1.29 0.00 0.00 1.40
703 720 8.644374 TTAAGCCACACCAGAAAGTATTATTT 57.356 30.769 0.00 0.00 0.00 1.40
704 721 6.759497 AGCCACACCAGAAAGTATTATTTC 57.241 37.500 0.00 0.00 39.09 2.17
705 722 5.652452 AGCCACACCAGAAAGTATTATTTCC 59.348 40.000 0.00 0.00 39.53 3.13
706 723 5.163550 GCCACACCAGAAAGTATTATTTCCC 60.164 44.000 0.00 0.00 39.53 3.97
707 724 5.359860 CCACACCAGAAAGTATTATTTCCCC 59.640 44.000 0.00 0.00 39.53 4.81
708 725 6.187682 CACACCAGAAAGTATTATTTCCCCT 58.812 40.000 0.00 0.00 39.53 4.79
709 726 7.343357 CACACCAGAAAGTATTATTTCCCCTA 58.657 38.462 0.00 0.00 39.53 3.53
710 727 7.998964 CACACCAGAAAGTATTATTTCCCCTAT 59.001 37.037 0.00 0.00 39.53 2.57
711 728 9.232882 ACACCAGAAAGTATTATTTCCCCTATA 57.767 33.333 0.00 0.00 39.53 1.31
718 735 9.802039 AAAGTATTATTTCCCCTATATTTGCGA 57.198 29.630 0.00 0.00 0.00 5.10
719 736 9.975218 AAGTATTATTTCCCCTATATTTGCGAT 57.025 29.630 0.00 0.00 0.00 4.58
720 737 9.396022 AGTATTATTTCCCCTATATTTGCGATG 57.604 33.333 0.00 0.00 0.00 3.84
735 752 0.456221 CGATGACTGGACTTAGCGGT 59.544 55.000 0.00 0.00 0.00 5.68
753 770 2.202566 GGTAGCACTAGTCGGCATTTC 58.797 52.381 7.83 0.00 0.00 2.17
849 866 9.546909 CTCATGTGTGTGTCAATCTTTAATTAC 57.453 33.333 0.00 0.00 0.00 1.89
961 994 6.424812 GGCACAATCTCTTTGCAGTTTAAATT 59.575 34.615 0.00 0.00 39.03 1.82
972 1005 8.667987 TTTGCAGTTTAAATTGATACATCGAC 57.332 30.769 14.30 0.00 0.00 4.20
973 1006 6.474364 TGCAGTTTAAATTGATACATCGACG 58.526 36.000 14.30 0.00 0.00 5.12
974 1007 5.392585 GCAGTTTAAATTGATACATCGACGC 59.607 40.000 14.30 0.00 0.00 5.19
1031 1064 0.829333 GCAGAGAGGAGATCAAGGCA 59.171 55.000 0.00 0.00 0.00 4.75
1032 1065 1.417145 GCAGAGAGGAGATCAAGGCAT 59.583 52.381 0.00 0.00 0.00 4.40
1033 1066 2.807472 GCAGAGAGGAGATCAAGGCATG 60.807 54.545 0.00 0.00 0.00 4.06
1034 1067 2.048601 AGAGAGGAGATCAAGGCATGG 58.951 52.381 0.00 0.00 0.00 3.66
1035 1068 1.072015 GAGAGGAGATCAAGGCATGGG 59.928 57.143 0.00 0.00 0.00 4.00
1036 1069 0.536915 GAGGAGATCAAGGCATGGGC 60.537 60.000 0.00 0.00 40.13 5.36
1037 1070 1.228228 GGAGATCAAGGCATGGGCA 59.772 57.895 0.00 0.00 43.71 5.36
1038 1071 0.178970 GGAGATCAAGGCATGGGCAT 60.179 55.000 0.00 0.00 43.71 4.40
1039 1072 0.959553 GAGATCAAGGCATGGGCATG 59.040 55.000 0.00 0.00 43.71 4.06
1040 1073 0.469331 AGATCAAGGCATGGGCATGG 60.469 55.000 0.00 0.00 43.71 3.66
1041 1074 1.458777 ATCAAGGCATGGGCATGGG 60.459 57.895 0.00 0.00 43.71 4.00
1042 1075 3.857038 CAAGGCATGGGCATGGGC 61.857 66.667 0.00 0.00 43.71 5.36
1116 1149 0.463833 TGCAGCATGGAGAGCATGAG 60.464 55.000 0.00 0.00 35.86 2.90
1140 1176 2.093711 GGAGGTCAAGGAGAAGAAGCTC 60.094 54.545 0.00 0.00 34.55 4.09
1348 1406 3.619038 CCTGATGCGAAGAAAAGGAGTAC 59.381 47.826 0.00 0.00 0.00 2.73
1349 1407 4.499183 CTGATGCGAAGAAAAGGAGTACT 58.501 43.478 0.00 0.00 0.00 2.73
1351 1409 5.408356 TGATGCGAAGAAAAGGAGTACTAC 58.592 41.667 0.00 0.00 0.00 2.73
1357 1416 5.106157 CGAAGAAAAGGAGTACTACCGGTTA 60.106 44.000 15.04 0.00 0.00 2.85
1378 1437 8.557029 CGGTTATTAGACTTTTTCTTGTCAGTT 58.443 33.333 0.00 0.00 35.55 3.16
1395 1454 2.093973 CAGTTTGCCTCCATCGTCTAGT 60.094 50.000 0.00 0.00 0.00 2.57
1462 1521 1.005340 CGCTCATCCTTGTCTCTTGC 58.995 55.000 0.00 0.00 0.00 4.01
1469 1528 0.390472 CCTTGTCTCTTGCTCCGTCC 60.390 60.000 0.00 0.00 0.00 4.79
1502 1561 7.812690 TGGATAACTAGCAAGAACGTATCTA 57.187 36.000 0.00 0.00 37.42 1.98
1503 1562 7.646314 TGGATAACTAGCAAGAACGTATCTAC 58.354 38.462 0.00 0.00 37.42 2.59
1574 1644 6.714810 AGCAAGGCCGATTATTAATACATGAA 59.285 34.615 0.00 0.00 0.00 2.57
1604 1674 2.740981 ACGTACTCAACTGGACGACTAG 59.259 50.000 6.26 0.00 38.63 2.57
1674 1744 1.938585 TCTTCTTCCACGATGTCCCT 58.061 50.000 0.00 0.00 0.00 4.20
1693 1763 2.430382 TTCTCACGGCCCTTGTCGAC 62.430 60.000 9.11 9.11 43.95 4.20
1700 1770 2.982130 CCCTTGTCGACTCAGGGG 59.018 66.667 31.45 24.23 45.72 4.79
1703 1773 1.371183 CTTGTCGACTCAGGGGCAA 59.629 57.895 17.92 0.00 0.00 4.52
1705 1775 0.250295 TTGTCGACTCAGGGGCAAAG 60.250 55.000 17.92 0.00 0.00 2.77
1706 1776 1.118965 TGTCGACTCAGGGGCAAAGA 61.119 55.000 17.92 0.00 0.00 2.52
1707 1777 0.390472 GTCGACTCAGGGGCAAAGAG 60.390 60.000 8.70 0.00 35.56 2.85
1708 1778 0.832135 TCGACTCAGGGGCAAAGAGT 60.832 55.000 4.90 4.90 44.71 3.24
1709 1779 0.895530 CGACTCAGGGGCAAAGAGTA 59.104 55.000 5.18 0.00 42.29 2.59
1710 1780 1.482593 CGACTCAGGGGCAAAGAGTAT 59.517 52.381 5.18 0.00 42.29 2.12
1711 1781 2.482142 CGACTCAGGGGCAAAGAGTATC 60.482 54.545 5.18 0.00 42.29 2.24
1712 1782 2.501723 GACTCAGGGGCAAAGAGTATCA 59.498 50.000 5.18 0.00 42.29 2.15
1716 1786 2.092212 CAGGGGCAAAGAGTATCATGGT 60.092 50.000 0.00 0.00 37.82 3.55
1753 1823 2.065899 TTTTTCCTGGGGATATGCCG 57.934 50.000 7.23 0.00 37.63 5.69
1970 2040 4.227134 CCCGCCACCATCGAGGAG 62.227 72.222 0.00 0.00 41.22 3.69
1982 2052 2.202756 GAGGAGTGCCGGTAAGCG 60.203 66.667 1.90 0.00 39.96 4.68
2004 2074 4.179579 GCCACCCGCAATTCTCGC 62.180 66.667 0.00 0.00 37.47 5.03
2006 2076 2.464459 CCACCCGCAATTCTCGCTC 61.464 63.158 0.00 0.00 0.00 5.03
2007 2077 1.741401 CACCCGCAATTCTCGCTCA 60.741 57.895 0.00 0.00 0.00 4.26
2008 2078 1.741770 ACCCGCAATTCTCGCTCAC 60.742 57.895 0.00 0.00 0.00 3.51
2009 2079 1.448540 CCCGCAATTCTCGCTCACT 60.449 57.895 0.00 0.00 0.00 3.41
2010 2080 1.424493 CCCGCAATTCTCGCTCACTC 61.424 60.000 0.00 0.00 0.00 3.51
2011 2081 1.627943 CGCAATTCTCGCTCACTCG 59.372 57.895 0.00 0.00 0.00 4.18
2012 2082 1.346538 GCAATTCTCGCTCACTCGC 59.653 57.895 0.00 0.00 0.00 5.03
2015 2085 0.037326 AATTCTCGCTCACTCGCCAA 60.037 50.000 0.00 0.00 0.00 4.52
2016 2086 0.737715 ATTCTCGCTCACTCGCCAAC 60.738 55.000 0.00 0.00 0.00 3.77
2017 2087 2.049156 CTCGCTCACTCGCCAACA 60.049 61.111 0.00 0.00 0.00 3.33
2018 2088 1.664649 CTCGCTCACTCGCCAACAA 60.665 57.895 0.00 0.00 0.00 2.83
2019 2089 1.891060 CTCGCTCACTCGCCAACAAC 61.891 60.000 0.00 0.00 0.00 3.32
2020 2090 2.243957 CGCTCACTCGCCAACAACA 61.244 57.895 0.00 0.00 0.00 3.33
2021 2091 1.279840 GCTCACTCGCCAACAACAC 59.720 57.895 0.00 0.00 0.00 3.32
2022 2092 1.941812 CTCACTCGCCAACAACACC 59.058 57.895 0.00 0.00 0.00 4.16
2023 2093 1.507141 CTCACTCGCCAACAACACCC 61.507 60.000 0.00 0.00 0.00 4.61
2024 2094 1.821759 CACTCGCCAACAACACCCA 60.822 57.895 0.00 0.00 0.00 4.51
2025 2095 1.150536 ACTCGCCAACAACACCCAT 59.849 52.632 0.00 0.00 0.00 4.00
2026 2096 0.398696 ACTCGCCAACAACACCCATA 59.601 50.000 0.00 0.00 0.00 2.74
2027 2097 1.202830 ACTCGCCAACAACACCCATAA 60.203 47.619 0.00 0.00 0.00 1.90
2028 2098 1.468520 CTCGCCAACAACACCCATAAG 59.531 52.381 0.00 0.00 0.00 1.73
2029 2099 0.109319 CGCCAACAACACCCATAAGC 60.109 55.000 0.00 0.00 0.00 3.09
2030 2100 1.256812 GCCAACAACACCCATAAGCT 58.743 50.000 0.00 0.00 0.00 3.74
2043 2113 4.748701 CCCATAAGCTACTAGGGTAGGAA 58.251 47.826 5.52 0.00 43.99 3.36
2044 2114 5.152934 CCCATAAGCTACTAGGGTAGGAAA 58.847 45.833 5.52 0.00 43.99 3.13
2045 2115 5.605488 CCCATAAGCTACTAGGGTAGGAAAA 59.395 44.000 5.52 0.00 43.99 2.29
2046 2116 6.272558 CCCATAAGCTACTAGGGTAGGAAAAT 59.727 42.308 5.52 0.00 43.99 1.82
2047 2117 7.202195 CCCATAAGCTACTAGGGTAGGAAAATT 60.202 40.741 5.52 0.00 43.99 1.82
2048 2118 8.877195 CCATAAGCTACTAGGGTAGGAAAATTA 58.123 37.037 0.00 0.00 43.99 1.40
2049 2119 9.930693 CATAAGCTACTAGGGTAGGAAAATTAG 57.069 37.037 0.00 0.00 43.99 1.73
2050 2120 6.997942 AGCTACTAGGGTAGGAAAATTAGG 57.002 41.667 0.00 0.00 43.99 2.69
2051 2121 6.690569 AGCTACTAGGGTAGGAAAATTAGGA 58.309 40.000 0.00 0.00 43.99 2.94
2052 2122 7.137567 AGCTACTAGGGTAGGAAAATTAGGAA 58.862 38.462 0.00 0.00 43.99 3.36
2053 2123 7.795171 AGCTACTAGGGTAGGAAAATTAGGAAT 59.205 37.037 0.00 0.00 43.99 3.01
2054 2124 7.878644 GCTACTAGGGTAGGAAAATTAGGAATG 59.121 40.741 0.00 0.00 43.99 2.67
2055 2125 6.602278 ACTAGGGTAGGAAAATTAGGAATGC 58.398 40.000 0.00 0.00 0.00 3.56
2056 2126 5.734031 AGGGTAGGAAAATTAGGAATGCT 57.266 39.130 0.00 0.00 0.00 3.79
2057 2127 6.092346 AGGGTAGGAAAATTAGGAATGCTT 57.908 37.500 0.00 0.00 0.00 3.91
2058 2128 6.503041 AGGGTAGGAAAATTAGGAATGCTTT 58.497 36.000 0.00 0.00 0.00 3.51
2059 2129 6.959954 AGGGTAGGAAAATTAGGAATGCTTTT 59.040 34.615 0.00 0.00 0.00 2.27
2060 2130 8.119891 AGGGTAGGAAAATTAGGAATGCTTTTA 58.880 33.333 0.00 0.00 0.00 1.52
2061 2131 8.195436 GGGTAGGAAAATTAGGAATGCTTTTAC 58.805 37.037 0.00 0.00 0.00 2.01
2062 2132 8.195436 GGTAGGAAAATTAGGAATGCTTTTACC 58.805 37.037 0.00 0.00 0.00 2.85
2063 2133 6.863275 AGGAAAATTAGGAATGCTTTTACCG 58.137 36.000 0.00 0.00 0.00 4.02
2064 2134 6.661805 AGGAAAATTAGGAATGCTTTTACCGA 59.338 34.615 0.00 0.00 0.00 4.69
2065 2135 7.177744 AGGAAAATTAGGAATGCTTTTACCGAA 59.822 33.333 0.00 0.00 0.00 4.30
2066 2136 7.815549 GGAAAATTAGGAATGCTTTTACCGAAA 59.184 33.333 0.00 0.00 0.00 3.46
2067 2137 9.198837 GAAAATTAGGAATGCTTTTACCGAAAA 57.801 29.630 0.00 0.00 33.48 2.29
2068 2138 9.549078 AAAATTAGGAATGCTTTTACCGAAAAA 57.451 25.926 0.00 0.00 34.16 1.94
2077 2147 2.691984 TTACCGAAAAAGGCTTTCGC 57.308 45.000 13.76 7.41 46.89 4.70
2078 2148 3.796165 TTTTACCGAAAAAGGCTTTCGCC 60.796 43.478 13.76 0.00 46.89 5.54
2079 2149 6.807607 TTTTACCGAAAAAGGCTTTCGCCC 62.808 45.833 13.76 2.28 46.89 6.13
2087 2157 3.509659 GCTTTCGCCCCGCTTTAT 58.490 55.556 0.00 0.00 0.00 1.40
2088 2158 2.697819 GCTTTCGCCCCGCTTTATA 58.302 52.632 0.00 0.00 0.00 0.98
2089 2159 1.018910 GCTTTCGCCCCGCTTTATAA 58.981 50.000 0.00 0.00 0.00 0.98
2090 2160 1.402613 GCTTTCGCCCCGCTTTATAAA 59.597 47.619 0.00 0.00 0.00 1.40
2091 2161 2.034179 GCTTTCGCCCCGCTTTATAAAT 59.966 45.455 0.00 0.00 0.00 1.40
2092 2162 3.251487 GCTTTCGCCCCGCTTTATAAATA 59.749 43.478 0.00 0.00 0.00 1.40
2093 2163 4.261280 GCTTTCGCCCCGCTTTATAAATAA 60.261 41.667 0.00 0.00 0.00 1.40
2094 2164 5.733937 GCTTTCGCCCCGCTTTATAAATAAA 60.734 40.000 0.00 0.00 0.00 1.40
2109 2179 6.827586 ATAAATAAAGAAAACCACCGAGCA 57.172 33.333 0.00 0.00 0.00 4.26
2110 2180 4.499037 AATAAAGAAAACCACCGAGCAC 57.501 40.909 0.00 0.00 0.00 4.40
2199 2270 0.040958 CAACTTCAACCAGCTGACGC 60.041 55.000 17.39 0.00 0.00 5.19
2288 2359 2.685380 AGCCTCCCCTTCTCCACG 60.685 66.667 0.00 0.00 0.00 4.94
2411 2482 1.777272 AGCCAGAACTTCCACTTCCTT 59.223 47.619 0.00 0.00 0.00 3.36
2692 2763 2.036733 TCAAGTACAACACCTTCTCCGG 59.963 50.000 0.00 0.00 0.00 5.14
2762 2833 2.357952 CTCGATGTCGGATTACCACTCA 59.642 50.000 2.25 0.00 40.29 3.41
2777 2848 3.573772 CTCACTCAACGGCTCCGCA 62.574 63.158 8.41 0.00 44.19 5.69
3009 3082 5.754782 AGGGCATTGATGTACATAGAAACA 58.245 37.500 8.71 0.00 0.00 2.83
3012 3085 6.974622 GGGCATTGATGTACATAGAAACAAAG 59.025 38.462 8.71 6.70 0.00 2.77
3053 3126 8.441312 TTCCTTCTGTATTTTTGTTTACTCGT 57.559 30.769 0.00 0.00 0.00 4.18
3054 3127 8.441312 TCCTTCTGTATTTTTGTTTACTCGTT 57.559 30.769 0.00 0.00 0.00 3.85
3055 3128 9.545105 TCCTTCTGTATTTTTGTTTACTCGTTA 57.455 29.630 0.00 0.00 0.00 3.18
3056 3129 9.590088 CCTTCTGTATTTTTGTTTACTCGTTAC 57.410 33.333 0.00 0.00 0.00 2.50
3059 3132 9.316730 TCTGTATTTTTGTTTACTCGTTACAGT 57.683 29.630 0.00 0.00 36.81 3.55
3060 3133 9.577003 CTGTATTTTTGTTTACTCGTTACAGTC 57.423 33.333 0.00 0.00 32.94 3.51
3097 3170 3.996150 AAGTGCAGTGGATTTTGAGTG 57.004 42.857 0.00 0.00 0.00 3.51
3150 3223 3.391506 AAAGCTTGAGGTTTGGAATGC 57.608 42.857 0.00 0.00 43.21 3.56
3158 3231 3.903090 TGAGGTTTGGAATGCAATCCTTT 59.097 39.130 21.32 2.99 40.35 3.11
3159 3232 5.083122 TGAGGTTTGGAATGCAATCCTTTA 58.917 37.500 21.32 8.04 40.35 1.85
3211 3284 4.954092 GGACTATTTCCAGCTCAGTTTG 57.046 45.455 0.00 0.00 45.10 2.93
3224 3297 3.119495 GCTCAGTTTGGTCAACACAAGTT 60.119 43.478 0.00 0.00 37.93 2.66
3226 3299 5.461032 TCAGTTTGGTCAACACAAGTTTT 57.539 34.783 0.00 0.00 37.93 2.43
3227 3300 6.576662 TCAGTTTGGTCAACACAAGTTTTA 57.423 33.333 0.00 0.00 37.93 1.52
3228 3301 6.982852 TCAGTTTGGTCAACACAAGTTTTAA 58.017 32.000 0.00 0.00 37.93 1.52
3229 3302 7.434492 TCAGTTTGGTCAACACAAGTTTTAAA 58.566 30.769 0.00 0.00 37.93 1.52
3230 3303 8.091449 TCAGTTTGGTCAACACAAGTTTTAAAT 58.909 29.630 0.00 0.00 37.93 1.40
3231 3304 8.716909 CAGTTTGGTCAACACAAGTTTTAAATT 58.283 29.630 0.00 0.00 37.93 1.82
3232 3305 9.278978 AGTTTGGTCAACACAAGTTTTAAATTT 57.721 25.926 0.00 0.00 37.93 1.82
3233 3306 9.885934 GTTTGGTCAACACAAGTTTTAAATTTT 57.114 25.926 0.00 0.00 35.28 1.82
3276 3349 7.455641 AATGAAAACACGGTCCAATATTACA 57.544 32.000 0.00 0.00 0.00 2.41
3277 3350 6.879276 TGAAAACACGGTCCAATATTACAA 57.121 33.333 0.00 0.00 0.00 2.41
3283 3356 5.175859 CACGGTCCAATATTACAACTCACT 58.824 41.667 0.00 0.00 0.00 3.41
3322 3395 6.908870 TGACATTTTCTAATCACGATCCTG 57.091 37.500 0.00 0.00 0.00 3.86
3333 3406 3.797039 TCACGATCCTGGAATGATTGTC 58.203 45.455 0.00 0.00 33.92 3.18
3363 3436 8.025445 AGTGCAATTTAAGCTTGATAAGAACTG 58.975 33.333 9.86 0.00 0.00 3.16
3407 3480 4.979815 AGTGCGCAATTTACTTACCAAAAC 59.020 37.500 14.00 0.00 0.00 2.43
3448 3521 4.881850 CCCTTCGTTATTACCTTTGAGCAT 59.118 41.667 0.00 0.00 0.00 3.79
3450 3523 6.458342 CCCTTCGTTATTACCTTTGAGCATTC 60.458 42.308 0.00 0.00 0.00 2.67
3451 3524 6.093495 CCTTCGTTATTACCTTTGAGCATTCA 59.907 38.462 0.00 0.00 0.00 2.57
3474 3548 5.244189 ACACTCAAGACAGTAGAGGAGTA 57.756 43.478 0.00 0.00 34.13 2.59
3492 3566 0.621571 TAACCTCCATGCAGGCTCCT 60.622 55.000 1.32 0.00 36.98 3.69
3497 3571 0.911045 TCCATGCAGGCTCCTCAGAA 60.911 55.000 0.00 0.00 37.29 3.02
3561 3645 6.383415 AGACTGAAGACGTAAATTCTGACTC 58.617 40.000 16.30 8.27 28.83 3.36
3586 3670 8.177456 TCATCACTATATCCAACCCAGTATACT 58.823 37.037 0.00 0.00 0.00 2.12
3595 3679 3.845781 ACCCAGTATACTCATTGCTGG 57.154 47.619 1.26 0.12 44.51 4.85
3627 3711 0.884704 CAGTACGGTGCCAAGCAGTT 60.885 55.000 0.00 0.00 40.08 3.16
3677 3761 7.860613 TCACTATTATTTGTCATGCCAATACG 58.139 34.615 0.00 0.00 0.00 3.06
3680 3764 3.698029 ATTTGTCATGCCAATACGAGC 57.302 42.857 0.00 0.00 0.00 5.03
3797 3881 5.997746 GCAAAGCTACTAATGTCATCCCATA 59.002 40.000 0.00 0.00 0.00 2.74
3813 3897 2.513753 CCATAACAACCAAGACCAGCA 58.486 47.619 0.00 0.00 0.00 4.41
3850 3934 6.942532 TTACTCTTCAGTCATTTGCAAAGT 57.057 33.333 18.19 8.06 33.62 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.884280 AGATTAACCAAGTGAAAAGAGTGG 57.116 37.500 0.00 0.00 35.39 4.00
106 110 6.705863 AATAACATGCTCCTTGATTCCTTC 57.294 37.500 0.00 0.00 0.00 3.46
125 129 9.921637 CCAAGCTAACCAATGAAAAGTTAATAA 57.078 29.630 0.00 0.00 0.00 1.40
178 182 0.529773 TGCCTACATCGATCGCCAAC 60.530 55.000 11.09 0.00 0.00 3.77
203 208 1.830477 GAGGCTGAGGTGAATCACTCT 59.170 52.381 13.53 8.57 34.40 3.24
208 213 3.350833 ACAAATGAGGCTGAGGTGAATC 58.649 45.455 0.00 0.00 0.00 2.52
213 218 2.957402 TGAACAAATGAGGCTGAGGT 57.043 45.000 0.00 0.00 0.00 3.85
255 260 2.880890 GGTGAGAGCACACACTCAATTT 59.119 45.455 11.03 0.00 43.79 1.82
262 267 1.882912 TTCATGGTGAGAGCACACAC 58.117 50.000 3.23 3.23 46.96 3.82
263 268 2.158769 AGTTTCATGGTGAGAGCACACA 60.159 45.455 9.99 0.00 46.96 3.72
275 280 2.227388 GTGTTCTCCTGCAGTTTCATGG 59.773 50.000 13.81 0.00 0.00 3.66
312 317 1.348594 GCATCTAACGTTGCGAGCC 59.651 57.895 11.99 0.00 0.00 4.70
319 324 2.289694 ACCTCAAGCTGCATCTAACGTT 60.290 45.455 5.88 5.88 0.00 3.99
341 346 1.317613 CCAGTGTTTGTTGCTAGGCA 58.682 50.000 0.00 0.00 36.47 4.75
342 347 0.039165 GCCAGTGTTTGTTGCTAGGC 60.039 55.000 0.00 0.00 0.00 3.93
344 349 3.138304 TGTAGCCAGTGTTTGTTGCTAG 58.862 45.455 0.00 0.00 35.38 3.42
345 350 3.138304 CTGTAGCCAGTGTTTGTTGCTA 58.862 45.455 0.00 0.00 33.80 3.49
376 389 2.308866 CTGGTGGTGATAGAAAAGGGGT 59.691 50.000 0.00 0.00 0.00 4.95
409 423 0.173935 TTGGTGGGTGATACGTAGCG 59.826 55.000 6.32 0.00 0.00 4.26
420 434 0.639943 AGGAAAAAGGGTTGGTGGGT 59.360 50.000 0.00 0.00 0.00 4.51
431 446 6.209361 GTGTGGCTTAAGAAGAAGGAAAAAG 58.791 40.000 6.67 0.00 0.00 2.27
438 455 4.008074 TCTGGTGTGGCTTAAGAAGAAG 57.992 45.455 6.67 0.00 0.00 2.85
465 482 8.680903 AGTCATTGCAAACATAGAGGAAATAAG 58.319 33.333 1.71 0.00 0.00 1.73
466 483 8.579850 AGTCATTGCAAACATAGAGGAAATAA 57.420 30.769 1.71 0.00 0.00 1.40
467 484 9.330063 CTAGTCATTGCAAACATAGAGGAAATA 57.670 33.333 1.71 0.00 0.00 1.40
468 485 8.049117 TCTAGTCATTGCAAACATAGAGGAAAT 58.951 33.333 1.71 0.00 0.00 2.17
469 486 7.334421 GTCTAGTCATTGCAAACATAGAGGAAA 59.666 37.037 1.71 0.00 0.00 3.13
470 487 6.818644 GTCTAGTCATTGCAAACATAGAGGAA 59.181 38.462 1.71 0.00 0.00 3.36
471 488 6.155221 AGTCTAGTCATTGCAAACATAGAGGA 59.845 38.462 1.71 0.00 0.00 3.71
472 489 6.344500 AGTCTAGTCATTGCAAACATAGAGG 58.656 40.000 1.71 0.00 0.00 3.69
473 490 7.840342 AAGTCTAGTCATTGCAAACATAGAG 57.160 36.000 1.71 0.00 0.00 2.43
474 491 9.151471 GTTAAGTCTAGTCATTGCAAACATAGA 57.849 33.333 1.71 6.59 0.00 1.98
475 492 9.155975 AGTTAAGTCTAGTCATTGCAAACATAG 57.844 33.333 1.71 4.22 0.00 2.23
476 493 9.502091 AAGTTAAGTCTAGTCATTGCAAACATA 57.498 29.630 1.71 0.00 0.00 2.29
477 494 7.986085 AGTTAAGTCTAGTCATTGCAAACAT 57.014 32.000 1.71 0.00 0.00 2.71
478 495 7.801716 AAGTTAAGTCTAGTCATTGCAAACA 57.198 32.000 1.71 0.00 0.00 2.83
479 496 9.813080 CTTAAGTTAAGTCTAGTCATTGCAAAC 57.187 33.333 13.58 0.00 0.00 2.93
480 497 8.504005 GCTTAAGTTAAGTCTAGTCATTGCAAA 58.496 33.333 20.95 0.00 38.07 3.68
481 498 7.119262 GGCTTAAGTTAAGTCTAGTCATTGCAA 59.881 37.037 20.95 0.00 37.42 4.08
482 499 6.594159 GGCTTAAGTTAAGTCTAGTCATTGCA 59.406 38.462 20.95 0.00 37.42 4.08
483 500 6.594159 TGGCTTAAGTTAAGTCTAGTCATTGC 59.406 38.462 23.90 7.46 40.91 3.56
484 501 7.602644 TGTGGCTTAAGTTAAGTCTAGTCATTG 59.397 37.037 23.90 0.00 40.91 2.82
485 502 7.603024 GTGTGGCTTAAGTTAAGTCTAGTCATT 59.397 37.037 23.90 0.00 40.91 2.57
486 503 7.097834 GTGTGGCTTAAGTTAAGTCTAGTCAT 58.902 38.462 23.90 0.00 40.91 3.06
487 504 6.453092 GTGTGGCTTAAGTTAAGTCTAGTCA 58.547 40.000 23.90 15.66 40.91 3.41
488 505 5.868258 GGTGTGGCTTAAGTTAAGTCTAGTC 59.132 44.000 23.90 13.82 40.91 2.59
489 506 5.306160 TGGTGTGGCTTAAGTTAAGTCTAGT 59.694 40.000 23.90 0.00 40.91 2.57
490 507 5.790593 TGGTGTGGCTTAAGTTAAGTCTAG 58.209 41.667 23.90 1.96 40.91 2.43
491 508 5.541101 TCTGGTGTGGCTTAAGTTAAGTCTA 59.459 40.000 23.90 12.86 40.91 2.59
492 509 4.347000 TCTGGTGTGGCTTAAGTTAAGTCT 59.653 41.667 23.90 0.00 40.91 3.24
493 510 4.638304 TCTGGTGTGGCTTAAGTTAAGTC 58.362 43.478 18.44 18.44 40.70 3.01
494 511 4.699925 TCTGGTGTGGCTTAAGTTAAGT 57.300 40.909 20.95 0.00 38.07 2.24
495 512 5.531287 ACTTTCTGGTGTGGCTTAAGTTAAG 59.469 40.000 16.87 16.87 38.80 1.85
496 513 5.442391 ACTTTCTGGTGTGGCTTAAGTTAA 58.558 37.500 4.02 0.00 0.00 2.01
497 514 5.043737 ACTTTCTGGTGTGGCTTAAGTTA 57.956 39.130 4.02 0.00 0.00 2.24
498 515 3.898482 ACTTTCTGGTGTGGCTTAAGTT 58.102 40.909 4.02 0.00 0.00 2.66
499 516 3.577805 ACTTTCTGGTGTGGCTTAAGT 57.422 42.857 4.02 0.00 0.00 2.24
500 517 7.865706 ATAATACTTTCTGGTGTGGCTTAAG 57.134 36.000 0.00 0.00 0.00 1.85
501 518 8.644374 AAATAATACTTTCTGGTGTGGCTTAA 57.356 30.769 0.00 0.00 0.00 1.85
502 519 7.338449 GGAAATAATACTTTCTGGTGTGGCTTA 59.662 37.037 0.00 0.00 35.81 3.09
503 520 6.152831 GGAAATAATACTTTCTGGTGTGGCTT 59.847 38.462 0.00 0.00 35.81 4.35
504 521 5.652452 GGAAATAATACTTTCTGGTGTGGCT 59.348 40.000 0.00 0.00 35.81 4.75
505 522 5.652452 AGGAAATAATACTTTCTGGTGTGGC 59.348 40.000 0.00 0.00 35.81 5.01
506 523 7.112779 AGAGGAAATAATACTTTCTGGTGTGG 58.887 38.462 0.00 0.00 35.81 4.17
507 524 9.838339 ATAGAGGAAATAATACTTTCTGGTGTG 57.162 33.333 0.00 0.00 35.81 3.82
520 537 9.950496 AGTCATCGCAAATATAGAGGAAATAAT 57.050 29.630 0.00 0.00 0.00 1.28
561 578 7.309805 GGAAATAATACTTTCTGGTGTGGCTTT 60.310 37.037 0.00 0.00 35.81 3.51
608 625 4.081642 TGGTGTGGCTTTAGCTAAGTCTAG 60.082 45.833 6.24 2.47 39.29 2.43
609 626 3.835978 TGGTGTGGCTTTAGCTAAGTCTA 59.164 43.478 6.24 0.00 39.29 2.59
610 627 2.637872 TGGTGTGGCTTTAGCTAAGTCT 59.362 45.455 6.24 0.00 39.29 3.24
611 628 3.003480 CTGGTGTGGCTTTAGCTAAGTC 58.997 50.000 6.24 3.70 41.70 3.01
612 629 2.637872 TCTGGTGTGGCTTTAGCTAAGT 59.362 45.455 6.24 0.00 41.70 2.24
613 630 3.334583 TCTGGTGTGGCTTTAGCTAAG 57.665 47.619 6.24 2.74 41.70 2.18
614 631 3.780804 TTCTGGTGTGGCTTTAGCTAA 57.219 42.857 0.86 0.86 41.70 3.09
615 632 3.072476 ACTTTCTGGTGTGGCTTTAGCTA 59.928 43.478 1.26 0.00 41.70 3.32
616 633 2.158608 ACTTTCTGGTGTGGCTTTAGCT 60.159 45.455 1.26 0.00 41.70 3.32
617 634 2.230660 ACTTTCTGGTGTGGCTTTAGC 58.769 47.619 0.00 0.00 41.14 3.09
618 635 7.865706 ATAATACTTTCTGGTGTGGCTTTAG 57.134 36.000 0.00 0.00 0.00 1.85
619 636 8.644374 AAATAATACTTTCTGGTGTGGCTTTA 57.356 30.769 0.00 0.00 0.00 1.85
620 637 7.309805 GGAAATAATACTTTCTGGTGTGGCTTT 60.310 37.037 0.00 0.00 35.81 3.51
621 638 6.152831 GGAAATAATACTTTCTGGTGTGGCTT 59.847 38.462 0.00 0.00 35.81 4.35
622 639 5.652452 GGAAATAATACTTTCTGGTGTGGCT 59.348 40.000 0.00 0.00 35.81 4.75
623 640 5.652452 AGGAAATAATACTTTCTGGTGTGGC 59.348 40.000 0.00 0.00 35.81 5.01
624 641 7.112779 AGAGGAAATAATACTTTCTGGTGTGG 58.887 38.462 0.00 0.00 35.81 4.17
625 642 9.838339 ATAGAGGAAATAATACTTTCTGGTGTG 57.162 33.333 0.00 0.00 35.81 3.82
638 655 9.950496 AGTCATCGCAAATATAGAGGAAATAAT 57.050 29.630 0.00 0.00 0.00 1.28
641 658 7.547370 GCTAGTCATCGCAAATATAGAGGAAAT 59.453 37.037 0.00 0.00 0.00 2.17
642 659 6.868864 GCTAGTCATCGCAAATATAGAGGAAA 59.131 38.462 0.00 0.00 0.00 3.13
643 660 6.209589 AGCTAGTCATCGCAAATATAGAGGAA 59.790 38.462 0.00 0.00 0.00 3.36
644 661 5.712446 AGCTAGTCATCGCAAATATAGAGGA 59.288 40.000 0.00 0.00 0.00 3.71
645 662 5.960113 AGCTAGTCATCGCAAATATAGAGG 58.040 41.667 0.00 0.00 0.00 3.69
646 663 7.908082 GTCTAGCTAGTCATCGCAAATATAGAG 59.092 40.741 20.10 0.00 0.00 2.43
647 664 7.608376 AGTCTAGCTAGTCATCGCAAATATAGA 59.392 37.037 20.10 0.00 0.00 1.98
648 665 7.757526 AGTCTAGCTAGTCATCGCAAATATAG 58.242 38.462 20.10 0.00 0.00 1.31
649 666 7.689446 AGTCTAGCTAGTCATCGCAAATATA 57.311 36.000 20.10 0.00 0.00 0.86
650 667 6.582677 AGTCTAGCTAGTCATCGCAAATAT 57.417 37.500 20.10 0.00 0.00 1.28
651 668 6.392625 AAGTCTAGCTAGTCATCGCAAATA 57.607 37.500 20.10 0.00 0.00 1.40
652 669 4.927978 AGTCTAGCTAGTCATCGCAAAT 57.072 40.909 20.10 0.00 0.00 2.32
653 670 4.720649 AAGTCTAGCTAGTCATCGCAAA 57.279 40.909 20.10 0.00 0.00 3.68
654 671 5.357314 AGTTAAGTCTAGCTAGTCATCGCAA 59.643 40.000 20.10 4.61 0.00 4.85
655 672 4.882427 AGTTAAGTCTAGCTAGTCATCGCA 59.118 41.667 20.10 0.00 0.00 5.10
656 673 5.427036 AGTTAAGTCTAGCTAGTCATCGC 57.573 43.478 20.10 8.42 0.00 4.58
657 674 7.588488 GCTTAAGTTAAGTCTAGCTAGTCATCG 59.412 40.741 20.10 0.00 38.07 3.84
658 675 7.863877 GGCTTAAGTTAAGTCTAGCTAGTCATC 59.136 40.741 20.10 9.58 37.42 2.92
659 676 7.342284 TGGCTTAAGTTAAGTCTAGCTAGTCAT 59.658 37.037 23.90 10.49 40.91 3.06
660 677 6.662234 TGGCTTAAGTTAAGTCTAGCTAGTCA 59.338 38.462 23.90 0.00 40.91 3.41
661 678 6.974048 GTGGCTTAAGTTAAGTCTAGCTAGTC 59.026 42.308 23.90 14.82 40.91 2.59
662 679 6.436532 TGTGGCTTAAGTTAAGTCTAGCTAGT 59.563 38.462 23.90 4.14 40.91 2.57
663 680 6.752815 GTGTGGCTTAAGTTAAGTCTAGCTAG 59.247 42.308 23.90 15.01 40.91 3.42
664 681 6.350780 GGTGTGGCTTAAGTTAAGTCTAGCTA 60.351 42.308 23.90 7.06 40.91 3.32
665 682 5.480205 GTGTGGCTTAAGTTAAGTCTAGCT 58.520 41.667 23.90 0.00 40.91 3.32
666 683 4.630505 GGTGTGGCTTAAGTTAAGTCTAGC 59.369 45.833 23.90 18.46 40.91 3.42
667 684 5.790593 TGGTGTGGCTTAAGTTAAGTCTAG 58.209 41.667 23.90 1.96 40.91 2.43
668 685 5.541101 TCTGGTGTGGCTTAAGTTAAGTCTA 59.459 40.000 23.90 12.86 40.91 2.59
669 686 4.347000 TCTGGTGTGGCTTAAGTTAAGTCT 59.653 41.667 23.90 0.00 40.91 3.24
670 687 4.638304 TCTGGTGTGGCTTAAGTTAAGTC 58.362 43.478 18.44 18.44 40.70 3.01
671 688 4.699925 TCTGGTGTGGCTTAAGTTAAGT 57.300 40.909 20.95 0.00 38.07 2.24
672 689 5.531287 ACTTTCTGGTGTGGCTTAAGTTAAG 59.469 40.000 16.87 16.87 38.80 1.85
673 690 5.442391 ACTTTCTGGTGTGGCTTAAGTTAA 58.558 37.500 4.02 0.00 0.00 2.01
674 691 5.043737 ACTTTCTGGTGTGGCTTAAGTTA 57.956 39.130 4.02 0.00 0.00 2.24
675 692 3.898482 ACTTTCTGGTGTGGCTTAAGTT 58.102 40.909 4.02 0.00 0.00 2.66
676 693 3.577805 ACTTTCTGGTGTGGCTTAAGT 57.422 42.857 4.02 0.00 0.00 2.24
677 694 7.865706 ATAATACTTTCTGGTGTGGCTTAAG 57.134 36.000 0.00 0.00 0.00 1.85
678 695 8.644374 AAATAATACTTTCTGGTGTGGCTTAA 57.356 30.769 0.00 0.00 0.00 1.85
679 696 7.338449 GGAAATAATACTTTCTGGTGTGGCTTA 59.662 37.037 0.00 0.00 35.81 3.09
680 697 6.152831 GGAAATAATACTTTCTGGTGTGGCTT 59.847 38.462 0.00 0.00 35.81 4.35
681 698 5.652452 GGAAATAATACTTTCTGGTGTGGCT 59.348 40.000 0.00 0.00 35.81 4.75
682 699 5.163550 GGGAAATAATACTTTCTGGTGTGGC 60.164 44.000 0.00 0.00 35.81 5.01
683 700 5.359860 GGGGAAATAATACTTTCTGGTGTGG 59.640 44.000 0.00 0.00 35.81 4.17
684 701 6.187682 AGGGGAAATAATACTTTCTGGTGTG 58.812 40.000 0.00 0.00 35.81 3.82
685 702 6.402981 AGGGGAAATAATACTTTCTGGTGT 57.597 37.500 0.00 0.00 35.81 4.16
692 709 9.802039 TCGCAAATATAGGGGAAATAATACTTT 57.198 29.630 0.00 0.00 0.00 2.66
693 710 9.975218 ATCGCAAATATAGGGGAAATAATACTT 57.025 29.630 0.00 0.00 0.00 2.24
694 711 9.396022 CATCGCAAATATAGGGGAAATAATACT 57.604 33.333 0.00 0.00 0.00 2.12
695 712 9.391006 TCATCGCAAATATAGGGGAAATAATAC 57.609 33.333 0.00 0.00 0.00 1.89
696 713 9.391006 GTCATCGCAAATATAGGGGAAATAATA 57.609 33.333 0.00 0.00 0.00 0.98
697 714 8.109634 AGTCATCGCAAATATAGGGGAAATAAT 58.890 33.333 0.00 0.00 0.00 1.28
698 715 7.390440 CAGTCATCGCAAATATAGGGGAAATAA 59.610 37.037 0.00 0.00 0.00 1.40
699 716 6.878923 CAGTCATCGCAAATATAGGGGAAATA 59.121 38.462 0.00 0.00 0.00 1.40
700 717 5.707298 CAGTCATCGCAAATATAGGGGAAAT 59.293 40.000 0.00 0.00 0.00 2.17
701 718 5.063204 CAGTCATCGCAAATATAGGGGAAA 58.937 41.667 0.00 0.00 0.00 3.13
702 719 4.504864 CCAGTCATCGCAAATATAGGGGAA 60.505 45.833 0.00 0.00 0.00 3.97
703 720 3.007940 CCAGTCATCGCAAATATAGGGGA 59.992 47.826 0.00 0.00 0.00 4.81
704 721 3.007940 TCCAGTCATCGCAAATATAGGGG 59.992 47.826 0.00 0.00 0.00 4.79
705 722 3.997021 GTCCAGTCATCGCAAATATAGGG 59.003 47.826 0.00 0.00 0.00 3.53
706 723 4.887748 AGTCCAGTCATCGCAAATATAGG 58.112 43.478 0.00 0.00 0.00 2.57
707 724 6.090088 GCTAAGTCCAGTCATCGCAAATATAG 59.910 42.308 0.00 0.00 0.00 1.31
708 725 5.926542 GCTAAGTCCAGTCATCGCAAATATA 59.073 40.000 0.00 0.00 0.00 0.86
709 726 4.752101 GCTAAGTCCAGTCATCGCAAATAT 59.248 41.667 0.00 0.00 0.00 1.28
710 727 4.119862 GCTAAGTCCAGTCATCGCAAATA 58.880 43.478 0.00 0.00 0.00 1.40
711 728 2.939103 GCTAAGTCCAGTCATCGCAAAT 59.061 45.455 0.00 0.00 0.00 2.32
712 729 2.346803 GCTAAGTCCAGTCATCGCAAA 58.653 47.619 0.00 0.00 0.00 3.68
713 730 1.735700 CGCTAAGTCCAGTCATCGCAA 60.736 52.381 0.00 0.00 0.00 4.85
714 731 0.179137 CGCTAAGTCCAGTCATCGCA 60.179 55.000 0.00 0.00 0.00 5.10
715 732 0.872021 CCGCTAAGTCCAGTCATCGC 60.872 60.000 0.00 0.00 0.00 4.58
716 733 0.456221 ACCGCTAAGTCCAGTCATCG 59.544 55.000 0.00 0.00 0.00 3.84
717 734 2.544069 GCTACCGCTAAGTCCAGTCATC 60.544 54.545 0.00 0.00 0.00 2.92
718 735 1.409427 GCTACCGCTAAGTCCAGTCAT 59.591 52.381 0.00 0.00 0.00 3.06
719 736 0.815734 GCTACCGCTAAGTCCAGTCA 59.184 55.000 0.00 0.00 0.00 3.41
720 737 0.815734 TGCTACCGCTAAGTCCAGTC 59.184 55.000 0.00 0.00 36.97 3.51
735 752 2.758423 TCAGAAATGCCGACTAGTGCTA 59.242 45.455 0.00 0.00 0.00 3.49
791 808 3.557264 GGAGACCTGTACCAACAAGGAAG 60.557 52.174 3.32 0.00 41.22 3.46
849 866 3.059044 GTGTACGTTGAACAGTATGCGAG 59.941 47.826 0.00 0.00 42.53 5.03
961 994 1.099689 TCTGGTGCGTCGATGTATCA 58.900 50.000 8.45 8.45 0.00 2.15
972 1005 3.220999 TTCTCCCACGTCTGGTGCG 62.221 63.158 0.82 0.00 45.62 5.34
973 1006 1.374758 CTTCTCCCACGTCTGGTGC 60.375 63.158 0.82 0.00 45.62 5.01
974 1007 1.374758 GCTTCTCCCACGTCTGGTG 60.375 63.158 0.82 0.00 46.57 4.17
1083 1116 3.965539 CTGCAACCCTCCTCCTGCG 62.966 68.421 0.00 0.00 37.62 5.18
1116 1149 1.270907 TCTTCTCCTTGACCTCCTGC 58.729 55.000 0.00 0.00 0.00 4.85
1140 1176 2.887568 GACAGGCCGCTCATGTCG 60.888 66.667 6.34 0.00 44.98 4.35
1284 1334 8.196771 TGTTCAAAAACAAGTGATTAGCAGAAT 58.803 29.630 0.00 0.00 42.34 2.40
1327 1385 4.499183 AGTACTCCTTTTCTTCGCATCAG 58.501 43.478 0.00 0.00 0.00 2.90
1348 1406 8.543862 ACAAGAAAAAGTCTAATAACCGGTAG 57.456 34.615 8.00 0.31 34.56 3.18
1349 1407 8.149647 TGACAAGAAAAAGTCTAATAACCGGTA 58.850 33.333 8.00 0.00 34.56 4.02
1351 1409 7.172703 ACTGACAAGAAAAAGTCTAATAACCGG 59.827 37.037 0.00 0.00 34.56 5.28
1357 1416 7.068716 AGGCAAACTGACAAGAAAAAGTCTAAT 59.931 33.333 0.00 0.00 34.56 1.73
1378 1437 4.760715 GTCTATACTAGACGATGGAGGCAA 59.239 45.833 0.00 0.00 44.90 4.52
1395 1454 7.719633 AGGCAAACTGACAAGAAAAAGTCTATA 59.280 33.333 0.00 0.00 34.56 1.31
1462 1521 1.803334 TCCATTCAAAACGGACGGAG 58.197 50.000 0.00 0.00 0.00 4.63
1469 1528 7.072177 TCTTGCTAGTTATCCATTCAAAACG 57.928 36.000 0.00 0.00 0.00 3.60
1502 1561 0.741915 AAAATGACACCGCCGTTTGT 59.258 45.000 0.00 0.00 0.00 2.83
1503 1562 1.784283 GAAAAATGACACCGCCGTTTG 59.216 47.619 0.00 0.00 0.00 2.93
1553 1623 5.648092 GGCTTCATGTATTAATAATCGGCCT 59.352 40.000 0.00 0.00 0.00 5.19
1574 1644 2.488545 CAGTTGAGTACGTGACTAGGCT 59.511 50.000 0.00 0.00 39.06 4.58
1674 1744 2.204461 TCGACAAGGGCCGTGAGAA 61.204 57.895 26.44 7.35 0.00 2.87
1693 1763 3.474600 CATGATACTCTTTGCCCCTGAG 58.525 50.000 0.00 0.00 0.00 3.35
1700 1770 5.419542 TGTAGACACCATGATACTCTTTGC 58.580 41.667 0.00 0.00 0.00 3.68
1703 1773 6.041409 CAGGATGTAGACACCATGATACTCTT 59.959 42.308 0.00 0.00 0.00 2.85
1705 1775 5.536538 TCAGGATGTAGACACCATGATACTC 59.463 44.000 0.00 0.00 37.40 2.59
1706 1776 5.458595 TCAGGATGTAGACACCATGATACT 58.541 41.667 0.00 0.00 37.40 2.12
1707 1777 5.791336 TCAGGATGTAGACACCATGATAC 57.209 43.478 0.00 0.00 37.40 2.24
1708 1778 5.221521 GCTTCAGGATGTAGACACCATGATA 60.222 44.000 0.00 0.00 35.26 2.15
1709 1779 4.444022 GCTTCAGGATGTAGACACCATGAT 60.444 45.833 0.00 0.00 35.26 2.45
1710 1780 3.118629 GCTTCAGGATGTAGACACCATGA 60.119 47.826 0.00 0.00 35.26 3.07
1711 1781 3.201290 GCTTCAGGATGTAGACACCATG 58.799 50.000 0.00 0.00 35.26 3.66
1712 1782 2.840038 TGCTTCAGGATGTAGACACCAT 59.160 45.455 0.00 0.00 35.26 3.55
1716 1786 5.415701 GGAAAAATGCTTCAGGATGTAGACA 59.584 40.000 0.00 0.00 35.26 3.41
1753 1823 1.142778 GAGCCTGTGACGATCGAAGC 61.143 60.000 24.34 13.88 0.00 3.86
1998 2068 1.372997 GTTGGCGAGTGAGCGAGAA 60.373 57.895 0.00 0.00 38.18 2.87
2001 2071 1.954146 GTTGTTGGCGAGTGAGCGA 60.954 57.895 0.00 0.00 38.18 4.93
2003 2073 1.279840 GTGTTGTTGGCGAGTGAGC 59.720 57.895 0.00 0.00 0.00 4.26
2004 2074 1.507141 GGGTGTTGTTGGCGAGTGAG 61.507 60.000 0.00 0.00 0.00 3.51
2006 2076 1.172180 ATGGGTGTTGTTGGCGAGTG 61.172 55.000 0.00 0.00 0.00 3.51
2007 2077 0.398696 TATGGGTGTTGTTGGCGAGT 59.601 50.000 0.00 0.00 0.00 4.18
2008 2078 1.468520 CTTATGGGTGTTGTTGGCGAG 59.531 52.381 0.00 0.00 0.00 5.03
2009 2079 1.529226 CTTATGGGTGTTGTTGGCGA 58.471 50.000 0.00 0.00 0.00 5.54
2010 2080 0.109319 GCTTATGGGTGTTGTTGGCG 60.109 55.000 0.00 0.00 0.00 5.69
2011 2081 1.256812 AGCTTATGGGTGTTGTTGGC 58.743 50.000 0.00 0.00 0.00 4.52
2012 2082 3.686016 AGTAGCTTATGGGTGTTGTTGG 58.314 45.455 0.00 0.00 0.00 3.77
2015 2085 3.454812 CCCTAGTAGCTTATGGGTGTTGT 59.545 47.826 0.00 0.00 33.49 3.32
2016 2086 4.073293 CCCTAGTAGCTTATGGGTGTTG 57.927 50.000 0.00 0.00 33.49 3.33
2021 2091 4.399483 TCCTACCCTAGTAGCTTATGGG 57.601 50.000 10.87 10.87 44.05 4.00
2022 2092 6.742559 TTTTCCTACCCTAGTAGCTTATGG 57.257 41.667 0.00 0.00 44.05 2.74
2023 2093 9.930693 CTAATTTTCCTACCCTAGTAGCTTATG 57.069 37.037 0.00 0.00 44.05 1.90
2024 2094 9.102453 CCTAATTTTCCTACCCTAGTAGCTTAT 57.898 37.037 0.00 0.00 44.05 1.73
2025 2095 8.291745 TCCTAATTTTCCTACCCTAGTAGCTTA 58.708 37.037 0.00 0.00 44.05 3.09
2026 2096 7.137567 TCCTAATTTTCCTACCCTAGTAGCTT 58.862 38.462 0.00 0.00 44.05 3.74
2027 2097 6.690569 TCCTAATTTTCCTACCCTAGTAGCT 58.309 40.000 0.00 0.00 44.05 3.32
2028 2098 6.990908 TCCTAATTTTCCTACCCTAGTAGC 57.009 41.667 0.00 0.00 44.05 3.58
2029 2099 7.878644 GCATTCCTAATTTTCCTACCCTAGTAG 59.121 40.741 0.00 0.00 44.85 2.57
2030 2100 7.571357 AGCATTCCTAATTTTCCTACCCTAGTA 59.429 37.037 0.00 0.00 0.00 1.82
2043 2113 9.203421 CTTTTTCGGTAAAAGCATTCCTAATTT 57.797 29.630 6.87 0.00 44.40 1.82
2044 2114 8.757164 CTTTTTCGGTAAAAGCATTCCTAATT 57.243 30.769 6.87 0.00 44.40 1.40
2071 2141 3.982576 ATTTATAAAGCGGGGCGAAAG 57.017 42.857 3.94 0.00 0.00 2.62
2072 2142 5.589452 TCTTTATTTATAAAGCGGGGCGAAA 59.411 36.000 14.54 0.00 45.46 3.46
2073 2143 5.124645 TCTTTATTTATAAAGCGGGGCGAA 58.875 37.500 14.54 0.00 45.46 4.70
2074 2144 4.706035 TCTTTATTTATAAAGCGGGGCGA 58.294 39.130 14.54 0.00 45.46 5.54
2075 2145 5.427036 TTCTTTATTTATAAAGCGGGGCG 57.573 39.130 14.54 0.00 45.46 6.13
2076 2146 6.477688 GGTTTTCTTTATTTATAAAGCGGGGC 59.522 38.462 14.54 6.36 45.46 5.80
2077 2147 7.490079 GTGGTTTTCTTTATTTATAAAGCGGGG 59.510 37.037 14.54 0.00 45.46 5.73
2078 2148 7.490079 GGTGGTTTTCTTTATTTATAAAGCGGG 59.510 37.037 14.54 0.00 45.46 6.13
2079 2149 7.219344 CGGTGGTTTTCTTTATTTATAAAGCGG 59.781 37.037 14.54 3.60 45.46 5.52
2080 2150 7.964011 TCGGTGGTTTTCTTTATTTATAAAGCG 59.036 33.333 14.54 10.70 45.46 4.68
2081 2151 9.285770 CTCGGTGGTTTTCTTTATTTATAAAGC 57.714 33.333 14.54 4.15 45.46 3.51
2082 2152 9.285770 GCTCGGTGGTTTTCTTTATTTATAAAG 57.714 33.333 13.58 13.58 46.59 1.85
2083 2153 8.794553 TGCTCGGTGGTTTTCTTTATTTATAAA 58.205 29.630 0.00 0.00 0.00 1.40
2084 2154 8.238631 GTGCTCGGTGGTTTTCTTTATTTATAA 58.761 33.333 0.00 0.00 0.00 0.98
2085 2155 7.390996 TGTGCTCGGTGGTTTTCTTTATTTATA 59.609 33.333 0.00 0.00 0.00 0.98
2086 2156 6.207810 TGTGCTCGGTGGTTTTCTTTATTTAT 59.792 34.615 0.00 0.00 0.00 1.40
2087 2157 5.531659 TGTGCTCGGTGGTTTTCTTTATTTA 59.468 36.000 0.00 0.00 0.00 1.40
2088 2158 4.339814 TGTGCTCGGTGGTTTTCTTTATTT 59.660 37.500 0.00 0.00 0.00 1.40
2089 2159 3.886505 TGTGCTCGGTGGTTTTCTTTATT 59.113 39.130 0.00 0.00 0.00 1.40
2090 2160 3.482436 TGTGCTCGGTGGTTTTCTTTAT 58.518 40.909 0.00 0.00 0.00 1.40
2091 2161 2.920524 TGTGCTCGGTGGTTTTCTTTA 58.079 42.857 0.00 0.00 0.00 1.85
2092 2162 1.757682 TGTGCTCGGTGGTTTTCTTT 58.242 45.000 0.00 0.00 0.00 2.52
2093 2163 1.404035 GTTGTGCTCGGTGGTTTTCTT 59.596 47.619 0.00 0.00 0.00 2.52
2094 2164 1.021968 GTTGTGCTCGGTGGTTTTCT 58.978 50.000 0.00 0.00 0.00 2.52
2095 2165 1.021968 AGTTGTGCTCGGTGGTTTTC 58.978 50.000 0.00 0.00 0.00 2.29
2096 2166 2.218603 CTAGTTGTGCTCGGTGGTTTT 58.781 47.619 0.00 0.00 0.00 2.43
2097 2167 1.542547 CCTAGTTGTGCTCGGTGGTTT 60.543 52.381 0.00 0.00 0.00 3.27
2098 2168 0.034896 CCTAGTTGTGCTCGGTGGTT 59.965 55.000 0.00 0.00 0.00 3.67
2099 2169 0.830444 TCCTAGTTGTGCTCGGTGGT 60.830 55.000 0.00 0.00 32.35 4.16
2100 2170 0.320374 TTCCTAGTTGTGCTCGGTGG 59.680 55.000 0.00 0.00 32.35 4.61
2101 2171 2.002586 CATTCCTAGTTGTGCTCGGTG 58.997 52.381 0.00 0.00 32.35 4.94
2102 2172 1.676014 GCATTCCTAGTTGTGCTCGGT 60.676 52.381 3.93 0.00 34.85 4.69
2103 2173 1.009829 GCATTCCTAGTTGTGCTCGG 58.990 55.000 3.93 0.00 34.85 4.63
2104 2174 1.009829 GGCATTCCTAGTTGTGCTCG 58.990 55.000 9.43 0.00 37.70 5.03
2105 2175 2.409948 AGGCATTCCTAGTTGTGCTC 57.590 50.000 9.43 0.00 42.06 4.26
2106 2176 2.821969 CAAAGGCATTCCTAGTTGTGCT 59.178 45.455 9.43 0.00 43.40 4.40
2107 2177 2.819608 TCAAAGGCATTCCTAGTTGTGC 59.180 45.455 0.00 2.79 43.40 4.57
2108 2178 4.074970 AGTCAAAGGCATTCCTAGTTGTG 58.925 43.478 0.00 0.00 43.40 3.33
2109 2179 4.373156 AGTCAAAGGCATTCCTAGTTGT 57.627 40.909 0.00 0.00 43.40 3.32
2110 2180 5.123979 GGTTAGTCAAAGGCATTCCTAGTTG 59.876 44.000 0.00 0.00 43.40 3.16
2288 2359 4.760047 AGCGCCGTCATGTGGGAC 62.760 66.667 2.29 0.00 34.42 4.46
2558 2629 0.664767 GCTCGACGATGTCCATAGGC 60.665 60.000 0.00 0.00 0.00 3.93
2777 2848 1.075151 GGAGAGGAACCCCGGAGAT 60.075 63.158 0.73 0.00 37.58 2.75
2825 2896 1.517832 CTTGGGCGAATCTCTCCGT 59.482 57.895 0.00 0.00 0.00 4.69
2962 3033 9.605275 CCTATTGTACTACTACACACTACTGTA 57.395 37.037 0.00 0.00 32.28 2.74
2963 3034 7.555554 CCCTATTGTACTACTACACACTACTGT 59.444 40.741 0.00 0.00 32.28 3.55
2973 3046 7.442656 ACATCAATGCCCTATTGTACTACTAC 58.557 38.462 0.00 0.00 45.17 2.73
3009 3082 4.822350 AGGAAAGTAAAAGCGCTCTTCTTT 59.178 37.500 12.06 18.28 35.47 2.52
3012 3085 4.452795 AGAAGGAAAGTAAAAGCGCTCTTC 59.547 41.667 12.06 15.55 0.00 2.87
3134 3207 3.853475 GGATTGCATTCCAAACCTCAAG 58.147 45.455 20.32 0.00 41.69 3.02
3207 3280 9.885934 AAAATTTAAAACTTGTGTTGACCAAAC 57.114 25.926 0.00 0.00 39.41 2.93
3263 3336 8.788325 AGTAAAGTGAGTTGTAATATTGGACC 57.212 34.615 0.00 0.00 0.00 4.46
3276 3349 8.398665 GTCATTTTCTGTTGAGTAAAGTGAGTT 58.601 33.333 0.00 0.00 0.00 3.01
3277 3350 7.552687 TGTCATTTTCTGTTGAGTAAAGTGAGT 59.447 33.333 0.00 0.00 0.00 3.41
3295 3368 8.960591 AGGATCGTGATTAGAAAATGTCATTTT 58.039 29.630 20.90 20.90 44.56 1.82
3311 3384 4.141642 TGACAATCATTCCAGGATCGTGAT 60.142 41.667 16.84 0.48 0.00 3.06
3313 3386 3.534554 TGACAATCATTCCAGGATCGTG 58.465 45.455 8.47 8.47 0.00 4.35
3322 3395 4.707030 TTGCACTGATGACAATCATTCC 57.293 40.909 0.00 0.00 41.97 3.01
3333 3406 8.186163 TCTTATCAAGCTTAAATTGCACTGATG 58.814 33.333 0.00 0.00 36.56 3.07
3363 3436 7.459486 GCACTCATATACTATATGCACAAAGC 58.541 38.462 10.24 5.92 45.96 3.51
3407 3480 1.747355 GGGAAGACATCAATGCAGGTG 59.253 52.381 0.00 0.00 0.00 4.00
3448 3521 4.893524 TCCTCTACTGTCTTGAGTGTTGAA 59.106 41.667 0.00 0.00 0.00 2.69
3450 3523 4.279671 ACTCCTCTACTGTCTTGAGTGTTG 59.720 45.833 0.00 0.00 32.22 3.33
3451 3524 4.475345 ACTCCTCTACTGTCTTGAGTGTT 58.525 43.478 0.00 0.00 32.22 3.32
3474 3548 1.919600 GAGGAGCCTGCATGGAGGTT 61.920 60.000 31.17 27.18 38.35 3.50
3478 3552 0.911045 TTCTGAGGAGCCTGCATGGA 60.911 55.000 6.40 0.00 38.35 3.41
3503 3586 4.996758 GGTGAATTTTTAGCCAGCATGTTT 59.003 37.500 0.00 0.00 0.00 2.83
3561 3645 8.367660 AGTATACTGGGTTGGATATAGTGATG 57.632 38.462 4.10 0.00 0.00 3.07
3586 3670 5.011586 TGATTGATTCTGTTCCAGCAATGA 58.988 37.500 0.00 0.00 27.71 2.57
3595 3679 4.201724 GCACCGTACTGATTGATTCTGTTC 60.202 45.833 0.00 0.00 37.63 3.18
3627 3711 3.501828 CGATGAGTTTTGTGTTGGATCCA 59.498 43.478 11.44 11.44 0.00 3.41
3645 3729 7.747799 GGCATGACAAATAATAGTGAATCGATG 59.252 37.037 0.00 0.00 0.00 3.84
3677 3761 5.415701 TCCTGTTTAAGAAATGGATGTGCTC 59.584 40.000 0.00 0.00 0.00 4.26
3680 3764 6.980593 TGTTCCTGTTTAAGAAATGGATGTG 58.019 36.000 0.00 0.00 0.00 3.21
3797 3881 1.111277 GGTTGCTGGTCTTGGTTGTT 58.889 50.000 0.00 0.00 0.00 2.83
3813 3897 7.288158 GACTGAAGAGTAATACCTATCCAGGTT 59.712 40.741 0.91 0.00 42.14 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.