Multiple sequence alignment - TraesCS2A01G432200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G432200 chr2A 100.000 2198 0 0 1 2198 685372666 685374863 0.000000e+00 4060.0
1 TraesCS2A01G432200 chr2A 88.606 667 40 18 786 1448 685380419 685381053 0.000000e+00 778.0
2 TraesCS2A01G432200 chr2A 81.727 695 65 34 781 1434 685410439 685411112 6.950000e-145 523.0
3 TraesCS2A01G432200 chr2A 87.065 402 30 12 816 1198 685626655 685627053 3.350000e-118 435.0
4 TraesCS2A01G432200 chr2A 86.750 400 26 10 825 1198 685491361 685491759 9.380000e-114 420.0
5 TraesCS2A01G432200 chr2A 82.353 425 30 17 1514 1906 685381125 685381536 5.850000e-86 327.0
6 TraesCS2A01G432200 chr2D 85.097 1134 77 39 709 1775 542543677 542544785 0.000000e+00 1074.0
7 TraesCS2A01G432200 chr2D 84.528 795 59 24 714 1476 542328527 542329289 0.000000e+00 728.0
8 TraesCS2A01G432200 chr2D 80.132 755 60 40 781 1476 542710334 542711057 4.240000e-132 481.0
9 TraesCS2A01G432200 chr2D 89.972 359 15 10 20 365 542687303 542687653 5.570000e-121 444.0
10 TraesCS2A01G432200 chr2D 80.600 567 39 29 1523 2056 542329397 542329925 2.670000e-99 372.0
11 TraesCS2A01G432200 chr2D 85.567 291 24 10 1514 1797 542711152 542711431 2.760000e-74 289.0
12 TraesCS2A01G432200 chr2D 85.271 129 7 5 1834 1962 542544787 542544903 2.960000e-24 122.0
13 TraesCS2A01G432200 chr2B 86.104 806 55 27 714 1487 647450789 647451569 0.000000e+00 815.0
14 TraesCS2A01G432200 chr2B 86.656 607 48 14 1 582 647537940 647538538 1.840000e-180 641.0
15 TraesCS2A01G432200 chr2B 84.789 664 57 24 1 632 647449874 647450525 5.150000e-176 627.0
16 TraesCS2A01G432200 chr2B 88.972 399 34 10 870 1258 647538946 647539344 3.280000e-133 484.0
17 TraesCS2A01G432200 chr2B 84.524 504 41 22 781 1251 647603640 647604139 4.270000e-127 464.0
18 TraesCS2A01G432200 chr2B 81.364 440 35 17 1512 1944 647539759 647540158 4.560000e-82 315.0
19 TraesCS2A01G432200 chr2B 82.514 183 20 11 1291 1462 647539465 647539646 1.360000e-32 150.0
20 TraesCS2A01G432200 chr2B 83.444 151 16 7 3 145 647601111 647601260 4.920000e-27 132.0
21 TraesCS2A01G432200 chr2B 83.108 148 14 10 1929 2068 647540595 647540739 8.240000e-25 124.0
22 TraesCS2A01G432200 chr2B 85.417 96 8 2 1376 1465 647604329 647604424 6.460000e-16 95.3
23 TraesCS2A01G432200 chr1D 97.436 39 1 0 2141 2179 447552271 447552233 1.410000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G432200 chr2A 685372666 685374863 2197 False 4060.000000 4060 100.000000 1 2198 1 chr2A.!!$F1 2197
1 TraesCS2A01G432200 chr2A 685380419 685381536 1117 False 552.500000 778 85.479500 786 1906 2 chr2A.!!$F5 1120
2 TraesCS2A01G432200 chr2A 685410439 685411112 673 False 523.000000 523 81.727000 781 1434 1 chr2A.!!$F2 653
3 TraesCS2A01G432200 chr2D 542543677 542544903 1226 False 598.000000 1074 85.184000 709 1962 2 chr2D.!!$F3 1253
4 TraesCS2A01G432200 chr2D 542328527 542329925 1398 False 550.000000 728 82.564000 714 2056 2 chr2D.!!$F2 1342
5 TraesCS2A01G432200 chr2D 542710334 542711431 1097 False 385.000000 481 82.849500 781 1797 2 chr2D.!!$F4 1016
6 TraesCS2A01G432200 chr2B 647449874 647451569 1695 False 721.000000 815 85.446500 1 1487 2 chr2B.!!$F1 1486
7 TraesCS2A01G432200 chr2B 647537940 647540739 2799 False 342.800000 641 84.522800 1 2068 5 chr2B.!!$F2 2067
8 TraesCS2A01G432200 chr2B 647601111 647604424 3313 False 230.433333 464 84.461667 3 1465 3 chr2B.!!$F3 1462

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
404 2351 0.039074 AGACAGGCGAGAGAACAACG 60.039 55.0 0.0 0.0 0.0 4.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2133 5443 0.031449 GCTGCGTGACCTAGGAGATC 59.969 60.0 17.98 2.94 0.0 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
208 217 1.640917 TAAGGAAGAGTCAGCCGGTT 58.359 50.000 1.90 0.00 0.00 4.44
219 228 3.004734 AGTCAGCCGGTTGATTCTTTTTG 59.995 43.478 24.54 0.00 0.00 2.44
272 1738 6.427150 TGTATCTCGCAAAGAAGAAAAACAC 58.573 36.000 0.00 0.00 37.61 3.32
286 1752 9.561069 AGAAGAAAAACACAGATAACATGTACT 57.439 29.630 0.00 0.00 0.00 2.73
287 1753 9.813080 GAAGAAAAACACAGATAACATGTACTC 57.187 33.333 0.00 0.00 0.00 2.59
288 1754 8.324163 AGAAAAACACAGATAACATGTACTCC 57.676 34.615 0.00 0.00 0.00 3.85
293 2209 8.458573 AACACAGATAACATGTACTCCAAAAA 57.541 30.769 0.00 0.00 0.00 1.94
344 2291 7.094463 TGCACATTTTCCATTTTCTTGTTTGTT 60.094 29.630 0.00 0.00 0.00 2.83
369 2316 5.745294 GGCAACATATACAAATGACTTGCTG 59.255 40.000 10.21 0.00 38.21 4.41
383 2330 2.626510 TGCTGGGGCATGGTGTATA 58.373 52.632 0.00 0.00 44.28 1.47
393 2340 2.864097 GCATGGTGTATAGAGACAGGCG 60.864 54.545 0.00 0.00 0.00 5.52
394 2341 2.430248 TGGTGTATAGAGACAGGCGA 57.570 50.000 0.00 0.00 0.00 5.54
404 2351 0.039074 AGACAGGCGAGAGAACAACG 60.039 55.000 0.00 0.00 0.00 4.10
422 2369 9.530633 AGAACAACGCTTATATCTAAACTAAGG 57.469 33.333 0.00 0.00 0.00 2.69
434 2381 6.488769 TCTAAACTAAGGTGTCTTCAACCA 57.511 37.500 0.00 0.00 34.59 3.67
445 2392 5.193679 GTGTCTTCAACCATAGGCCTTATT 58.806 41.667 12.58 0.00 0.00 1.40
447 2394 5.193679 GTCTTCAACCATAGGCCTTATTGT 58.806 41.667 12.58 0.00 0.00 2.71
451 2398 5.329399 TCAACCATAGGCCTTATTGTGTTT 58.671 37.500 12.58 0.00 0.00 2.83
472 2419 0.611714 TCGTCTAGCCCAAAAGACCC 59.388 55.000 0.00 0.00 39.16 4.46
502 2466 4.669866 ATCTTATCATGGATGGGCACAT 57.330 40.909 0.00 0.00 40.85 3.21
504 2468 2.590282 TATCATGGATGGGCACATGG 57.410 50.000 5.94 0.00 43.49 3.66
582 2546 5.049167 TGTACCAAACCGTTTGTGTAGTAG 58.951 41.667 20.03 7.66 38.98 2.57
624 2751 2.135664 ATACACTAGCGCCGCTAAAG 57.864 50.000 20.50 16.68 40.82 1.85
626 2753 0.179134 ACACTAGCGCCGCTAAAGAG 60.179 55.000 20.50 12.59 40.82 2.85
627 2754 0.872021 CACTAGCGCCGCTAAAGAGG 60.872 60.000 20.50 10.35 40.82 3.69
632 2759 0.733150 GCGCCGCTAAAGAGGAAAAT 59.267 50.000 0.00 0.00 37.14 1.82
633 2760 1.268083 GCGCCGCTAAAGAGGAAAATC 60.268 52.381 0.00 0.00 37.14 2.17
647 2845 4.385825 AGGAAAATCAAAGCGTGTACTCA 58.614 39.130 0.00 0.00 0.00 3.41
655 2853 4.021807 TCAAAGCGTGTACTCATCCACTAA 60.022 41.667 0.00 0.00 0.00 2.24
656 2854 3.784701 AGCGTGTACTCATCCACTAAG 57.215 47.619 0.00 0.00 0.00 2.18
657 2855 2.427453 AGCGTGTACTCATCCACTAAGG 59.573 50.000 0.00 0.00 39.47 2.69
712 2910 4.982241 TTTTGGATGAGGACTGAAGAGT 57.018 40.909 0.00 0.00 33.98 3.24
740 3161 2.812499 CCTCCCGTGGGTCGTATG 59.188 66.667 4.53 0.00 37.94 2.39
770 3217 2.421073 GGCGAGCCGGTAAAAGTAAAAT 59.579 45.455 1.90 0.00 0.00 1.82
779 3226 5.048852 CCGGTAAAAGTAAAATCCAAACGGA 60.049 40.000 0.00 0.00 37.43 4.69
821 3276 3.052082 CGGTCCTGCCACTGCTTG 61.052 66.667 0.00 0.00 38.71 4.01
854 3327 3.461061 CTCGTCCCGTCCGCTATATATA 58.539 50.000 0.00 0.00 0.00 0.86
855 3328 3.198068 TCGTCCCGTCCGCTATATATAC 58.802 50.000 0.00 0.00 0.00 1.47
856 3329 2.033407 CGTCCCGTCCGCTATATATACG 60.033 54.545 7.39 7.39 0.00 3.06
860 3333 2.789491 GTCCGCTATATATACGGGCC 57.211 55.000 22.49 0.00 45.61 5.80
861 3334 2.305009 GTCCGCTATATATACGGGCCT 58.695 52.381 22.49 0.00 45.61 5.19
905 3391 5.366477 ACAACAATCCCCAGACTTTTCAAAT 59.634 36.000 0.00 0.00 0.00 2.32
948 3472 0.394488 TCTTCCTCCTCTCGTGCGAT 60.394 55.000 0.00 0.00 0.00 4.58
1258 3801 0.872021 GATCAACTAGCGTGCGGAGG 60.872 60.000 0.00 0.00 0.00 4.30
1351 4047 8.511604 TCATTCATCTAATTTCCAGACTTTCC 57.488 34.615 0.00 0.00 0.00 3.13
1352 4048 8.108999 TCATTCATCTAATTTCCAGACTTTCCA 58.891 33.333 0.00 0.00 0.00 3.53
1353 4049 7.928307 TTCATCTAATTTCCAGACTTTCCAG 57.072 36.000 0.00 0.00 0.00 3.86
1379 4095 5.421693 AGCCATATCTAGCTAATCTGGTGAG 59.578 44.000 15.32 0.00 37.64 3.51
1476 4207 1.173043 CGCAGGCCAGTAATGGAAAA 58.827 50.000 14.70 0.00 0.00 2.29
1480 4211 4.183865 GCAGGCCAGTAATGGAAAATTTC 58.816 43.478 14.70 0.00 0.00 2.17
1483 4214 6.229733 CAGGCCAGTAATGGAAAATTTCAAA 58.770 36.000 14.70 0.00 0.00 2.69
1484 4215 6.147656 CAGGCCAGTAATGGAAAATTTCAAAC 59.852 38.462 14.70 0.35 0.00 2.93
1485 4216 5.120053 GGCCAGTAATGGAAAATTTCAAACG 59.880 40.000 14.70 0.00 0.00 3.60
1486 4217 5.389411 GCCAGTAATGGAAAATTTCAAACGC 60.389 40.000 14.70 0.00 0.00 4.84
1488 4219 5.925969 CAGTAATGGAAAATTTCAAACGCCT 59.074 36.000 8.09 0.00 0.00 5.52
1489 4220 6.089417 CAGTAATGGAAAATTTCAAACGCCTC 59.911 38.462 8.09 0.00 0.00 4.70
1490 4221 4.871933 ATGGAAAATTTCAAACGCCTCT 57.128 36.364 8.09 0.00 0.00 3.69
1492 4223 3.234386 GGAAAATTTCAAACGCCTCTCG 58.766 45.455 8.09 0.00 45.38 4.04
1507 4271 1.598132 CTCTCGTCCGCTCGATTAAGA 59.402 52.381 1.14 0.00 39.12 2.10
1521 4317 6.853362 GCTCGATTAAGAATTTAAGATGGTGC 59.147 38.462 0.00 0.00 32.58 5.01
1549 4349 2.903855 CGGCTGGGACCATGATGC 60.904 66.667 0.00 0.00 0.00 3.91
1556 4356 2.475466 GGACCATGATGCTGTGCGG 61.475 63.158 0.00 0.00 0.00 5.69
1596 4400 0.530744 CTGCCCAGTGACTAGCGTAA 59.469 55.000 0.00 0.00 0.00 3.18
1604 4408 2.089980 GTGACTAGCGTAACCCTCTGA 58.910 52.381 0.00 0.00 0.00 3.27
1748 4563 2.167861 GCACAGAATCTCCGTCGCC 61.168 63.158 0.00 0.00 0.00 5.54
1832 4669 4.641645 TCCCACAAGCCACGGCAG 62.642 66.667 11.35 4.90 44.88 4.85
1885 4722 1.877443 CCTTCCGTTGGTTACCTGTTG 59.123 52.381 2.07 0.00 0.00 3.33
1906 4743 1.355796 TTTCGCGGGCAATCACGTAG 61.356 55.000 6.13 0.00 0.00 3.51
1908 4745 1.226745 CGCGGGCAATCACGTAGTA 60.227 57.895 0.00 0.00 41.61 1.82
1909 4746 1.206745 CGCGGGCAATCACGTAGTAG 61.207 60.000 0.00 0.00 41.61 2.57
1910 4747 0.179119 GCGGGCAATCACGTAGTAGT 60.179 55.000 0.00 0.00 41.61 2.73
1911 4748 1.066002 GCGGGCAATCACGTAGTAGTA 59.934 52.381 0.00 0.00 41.61 1.82
1912 4749 2.724349 CGGGCAATCACGTAGTAGTAC 58.276 52.381 0.00 0.00 41.61 2.73
1966 5257 3.673484 GCACGGCTGCACATTGGT 61.673 61.111 0.50 0.00 43.62 3.67
1969 5260 3.049674 CGGCTGCACATTGGTCGT 61.050 61.111 0.50 0.00 0.00 4.34
2052 5362 7.013178 TCTGTCAAGACAAATTCATTAGTTGCA 59.987 33.333 4.29 0.00 41.33 4.08
2073 5383 3.532641 AAAAAGGAGGATTGGCAGAGT 57.467 42.857 0.00 0.00 0.00 3.24
2074 5384 4.657814 AAAAAGGAGGATTGGCAGAGTA 57.342 40.909 0.00 0.00 0.00 2.59
2075 5385 3.922171 AAAGGAGGATTGGCAGAGTAG 57.078 47.619 0.00 0.00 0.00 2.57
2076 5386 2.559381 AGGAGGATTGGCAGAGTAGT 57.441 50.000 0.00 0.00 0.00 2.73
2077 5387 3.689872 AGGAGGATTGGCAGAGTAGTA 57.310 47.619 0.00 0.00 0.00 1.82
2078 5388 3.301274 AGGAGGATTGGCAGAGTAGTAC 58.699 50.000 0.00 0.00 0.00 2.73
2079 5389 3.052490 AGGAGGATTGGCAGAGTAGTACT 60.052 47.826 1.37 1.37 0.00 2.73
2080 5390 3.068873 GGAGGATTGGCAGAGTAGTACTG 59.931 52.174 7.76 0.00 38.27 2.74
2081 5391 3.954904 GAGGATTGGCAGAGTAGTACTGA 59.045 47.826 7.76 0.00 37.54 3.41
2082 5392 4.551671 AGGATTGGCAGAGTAGTACTGAT 58.448 43.478 7.76 0.00 37.54 2.90
2083 5393 4.586841 AGGATTGGCAGAGTAGTACTGATC 59.413 45.833 7.76 3.28 37.54 2.92
2084 5394 4.262249 GGATTGGCAGAGTAGTACTGATCC 60.262 50.000 7.76 6.01 37.54 3.36
2085 5395 2.667470 TGGCAGAGTAGTACTGATCCC 58.333 52.381 7.76 3.52 37.54 3.85
2086 5396 2.245028 TGGCAGAGTAGTACTGATCCCT 59.755 50.000 7.76 0.00 37.54 4.20
2087 5397 2.625790 GGCAGAGTAGTACTGATCCCTG 59.374 54.545 7.76 9.33 37.54 4.45
2088 5398 2.625790 GCAGAGTAGTACTGATCCCTGG 59.374 54.545 7.76 0.00 37.54 4.45
2089 5399 3.688702 GCAGAGTAGTACTGATCCCTGGA 60.689 52.174 7.76 0.00 37.54 3.86
2090 5400 4.735369 CAGAGTAGTACTGATCCCTGGAT 58.265 47.826 7.76 0.00 37.54 3.41
2091 5401 5.144100 CAGAGTAGTACTGATCCCTGGATT 58.856 45.833 7.76 0.00 37.54 3.01
2092 5402 5.010516 CAGAGTAGTACTGATCCCTGGATTG 59.989 48.000 7.76 0.00 37.54 2.67
2093 5403 4.884961 AGTAGTACTGATCCCTGGATTGT 58.115 43.478 5.39 5.72 34.60 2.71
2094 5404 5.281314 AGTAGTACTGATCCCTGGATTGTT 58.719 41.667 5.39 0.00 34.60 2.83
2095 5405 5.726793 AGTAGTACTGATCCCTGGATTGTTT 59.273 40.000 5.39 0.00 34.60 2.83
2096 5406 5.104259 AGTACTGATCCCTGGATTGTTTC 57.896 43.478 0.00 1.73 34.60 2.78
2097 5407 2.991250 ACTGATCCCTGGATTGTTTCG 58.009 47.619 0.00 0.00 34.60 3.46
2098 5408 2.571653 ACTGATCCCTGGATTGTTTCGA 59.428 45.455 0.00 0.00 34.60 3.71
2099 5409 3.201290 CTGATCCCTGGATTGTTTCGAG 58.799 50.000 0.00 0.00 34.60 4.04
2100 5410 2.571653 TGATCCCTGGATTGTTTCGAGT 59.428 45.455 0.00 0.00 34.60 4.18
2101 5411 3.009033 TGATCCCTGGATTGTTTCGAGTT 59.991 43.478 0.00 0.00 34.60 3.01
2102 5412 3.053831 TCCCTGGATTGTTTCGAGTTC 57.946 47.619 0.00 0.00 0.00 3.01
2103 5413 2.637872 TCCCTGGATTGTTTCGAGTTCT 59.362 45.455 0.00 0.00 0.00 3.01
2104 5414 3.003480 CCCTGGATTGTTTCGAGTTCTC 58.997 50.000 0.00 0.00 0.00 2.87
2105 5415 2.668457 CCTGGATTGTTTCGAGTTCTCG 59.332 50.000 14.93 14.93 0.00 4.04
2106 5416 3.575630 CTGGATTGTTTCGAGTTCTCGA 58.424 45.455 18.89 18.89 40.66 4.04
2107 5417 3.314553 TGGATTGTTTCGAGTTCTCGAC 58.685 45.455 21.80 13.84 42.20 4.20
2108 5418 2.666994 GGATTGTTTCGAGTTCTCGACC 59.333 50.000 21.80 15.34 42.20 4.79
2109 5419 1.762419 TTGTTTCGAGTTCTCGACCG 58.238 50.000 21.80 0.00 42.20 4.79
2110 5420 0.039798 TGTTTCGAGTTCTCGACCGG 60.040 55.000 21.80 0.00 42.20 5.28
2111 5421 1.080974 TTTCGAGTTCTCGACCGGC 60.081 57.895 21.80 0.00 42.20 6.13
2112 5422 1.798234 TTTCGAGTTCTCGACCGGCA 61.798 55.000 21.80 6.89 42.20 5.69
2113 5423 1.592400 TTCGAGTTCTCGACCGGCAT 61.592 55.000 21.80 0.00 42.20 4.40
2114 5424 1.586564 CGAGTTCTCGACCGGCATC 60.587 63.158 15.87 0.00 34.64 3.91
2115 5425 1.511305 GAGTTCTCGACCGGCATCA 59.489 57.895 0.00 0.00 0.00 3.07
2116 5426 0.108804 GAGTTCTCGACCGGCATCAA 60.109 55.000 0.00 0.00 0.00 2.57
2117 5427 0.389948 AGTTCTCGACCGGCATCAAC 60.390 55.000 0.00 0.00 0.00 3.18
2118 5428 1.445410 TTCTCGACCGGCATCAACG 60.445 57.895 0.00 0.00 0.00 4.10
2119 5429 2.126071 CTCGACCGGCATCAACGT 60.126 61.111 0.00 0.00 0.00 3.99
2120 5430 2.431771 TCGACCGGCATCAACGTG 60.432 61.111 0.00 0.00 0.00 4.49
2121 5431 2.431771 CGACCGGCATCAACGTGA 60.432 61.111 0.00 0.00 0.00 4.35
2122 5432 2.726691 CGACCGGCATCAACGTGAC 61.727 63.158 0.00 0.00 0.00 3.67
2123 5433 1.374252 GACCGGCATCAACGTGACT 60.374 57.895 0.00 0.00 0.00 3.41
2124 5434 1.626654 GACCGGCATCAACGTGACTG 61.627 60.000 0.00 0.00 0.00 3.51
2125 5435 1.667830 CCGGCATCAACGTGACTGT 60.668 57.895 0.00 0.00 0.00 3.55
2126 5436 0.389296 CCGGCATCAACGTGACTGTA 60.389 55.000 0.00 0.00 0.00 2.74
2127 5437 1.640428 CGGCATCAACGTGACTGTAT 58.360 50.000 0.00 0.00 0.00 2.29
2128 5438 1.999735 CGGCATCAACGTGACTGTATT 59.000 47.619 0.00 0.00 0.00 1.89
2129 5439 2.222796 CGGCATCAACGTGACTGTATTG 60.223 50.000 0.00 0.00 0.00 1.90
2130 5440 2.476185 GGCATCAACGTGACTGTATTGC 60.476 50.000 0.00 0.00 0.00 3.56
2131 5441 2.784327 GCATCAACGTGACTGTATTGCG 60.784 50.000 0.00 0.00 0.00 4.85
2132 5442 1.424403 TCAACGTGACTGTATTGCGG 58.576 50.000 0.00 0.00 0.00 5.69
2133 5443 0.442310 CAACGTGACTGTATTGCGGG 59.558 55.000 0.00 0.00 0.00 6.13
2134 5444 0.319083 AACGTGACTGTATTGCGGGA 59.681 50.000 0.00 0.00 0.00 5.14
2135 5445 0.535335 ACGTGACTGTATTGCGGGAT 59.465 50.000 0.00 0.00 0.00 3.85
2136 5446 1.209128 CGTGACTGTATTGCGGGATC 58.791 55.000 0.00 0.00 0.00 3.36
2137 5447 1.202417 CGTGACTGTATTGCGGGATCT 60.202 52.381 0.00 0.00 0.00 2.75
2138 5448 2.474816 GTGACTGTATTGCGGGATCTC 58.525 52.381 0.00 0.00 0.00 2.75
2139 5449 1.412710 TGACTGTATTGCGGGATCTCC 59.587 52.381 0.00 0.00 0.00 3.71
2140 5450 1.689273 GACTGTATTGCGGGATCTCCT 59.311 52.381 0.00 0.00 35.95 3.69
2141 5451 2.891580 GACTGTATTGCGGGATCTCCTA 59.108 50.000 0.00 0.00 35.95 2.94
2142 5452 2.894126 ACTGTATTGCGGGATCTCCTAG 59.106 50.000 0.00 0.00 35.95 3.02
2143 5453 2.232452 CTGTATTGCGGGATCTCCTAGG 59.768 54.545 0.82 0.82 35.95 3.02
2144 5454 2.249139 GTATTGCGGGATCTCCTAGGT 58.751 52.381 9.08 0.00 35.95 3.08
2145 5455 1.343069 ATTGCGGGATCTCCTAGGTC 58.657 55.000 9.08 0.00 35.95 3.85
2146 5456 0.032515 TTGCGGGATCTCCTAGGTCA 60.033 55.000 9.08 0.00 35.95 4.02
2147 5457 0.755698 TGCGGGATCTCCTAGGTCAC 60.756 60.000 9.08 0.00 35.95 3.67
2148 5458 1.797211 GCGGGATCTCCTAGGTCACG 61.797 65.000 16.18 16.18 41.45 4.35
2149 5459 1.797211 CGGGATCTCCTAGGTCACGC 61.797 65.000 9.35 7.14 31.56 5.34
2150 5460 0.755698 GGGATCTCCTAGGTCACGCA 60.756 60.000 9.08 0.00 35.95 5.24
2151 5461 0.671251 GGATCTCCTAGGTCACGCAG 59.329 60.000 9.08 0.00 0.00 5.18
2152 5462 0.031449 GATCTCCTAGGTCACGCAGC 59.969 60.000 9.08 0.00 0.00 5.25
2153 5463 1.395826 ATCTCCTAGGTCACGCAGCC 61.396 60.000 9.08 0.00 0.00 4.85
2154 5464 3.417275 CTCCTAGGTCACGCAGCCG 62.417 68.421 9.08 0.00 41.14 5.52
2170 5480 3.775654 CGCCGCCTCCTCCTCTTT 61.776 66.667 0.00 0.00 0.00 2.52
2171 5481 2.188207 GCCGCCTCCTCCTCTTTC 59.812 66.667 0.00 0.00 0.00 2.62
2172 5482 2.660064 GCCGCCTCCTCCTCTTTCA 61.660 63.158 0.00 0.00 0.00 2.69
2173 5483 1.983224 CCGCCTCCTCCTCTTTCAA 59.017 57.895 0.00 0.00 0.00 2.69
2174 5484 0.324943 CCGCCTCCTCCTCTTTCAAA 59.675 55.000 0.00 0.00 0.00 2.69
2175 5485 1.271379 CCGCCTCCTCCTCTTTCAAAA 60.271 52.381 0.00 0.00 0.00 2.44
2176 5486 2.504367 CGCCTCCTCCTCTTTCAAAAA 58.496 47.619 0.00 0.00 0.00 1.94
2196 5506 5.665916 AAAAAGATAGGGTTCATGCCTTG 57.334 39.130 0.00 0.00 0.00 3.61
2197 5507 4.322057 AAAGATAGGGTTCATGCCTTGT 57.678 40.909 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
70 74 6.641474 ACTCTAGATCGGTTAAAAAGGGAAG 58.359 40.000 0.00 0.00 0.00 3.46
71 75 6.616237 ACTCTAGATCGGTTAAAAAGGGAA 57.384 37.500 0.00 0.00 0.00 3.97
73 77 7.325694 TGTAACTCTAGATCGGTTAAAAAGGG 58.674 38.462 5.01 0.00 0.00 3.95
74 78 8.943909 ATGTAACTCTAGATCGGTTAAAAAGG 57.056 34.615 5.01 0.00 0.00 3.11
208 217 9.517609 CATTTTGATTTTTGCCAAAAAGAATCA 57.482 25.926 19.06 14.98 42.97 2.57
219 228 6.316440 ACATTGACCATTTTGATTTTTGCC 57.684 33.333 0.00 0.00 0.00 4.52
293 2209 8.559536 CACGTGCCAGATTTATATAGTTCAAAT 58.440 33.333 0.82 0.00 0.00 2.32
344 2291 5.418524 AGCAAGTCATTTGTATATGTTGCCA 59.581 36.000 0.00 0.00 37.83 4.92
369 2316 2.037772 CTGTCTCTATACACCATGCCCC 59.962 54.545 0.00 0.00 0.00 5.80
378 2325 3.840124 TCTCTCGCCTGTCTCTATACA 57.160 47.619 0.00 0.00 0.00 2.29
379 2326 3.878103 TGTTCTCTCGCCTGTCTCTATAC 59.122 47.826 0.00 0.00 0.00 1.47
383 2330 1.271102 GTTGTTCTCTCGCCTGTCTCT 59.729 52.381 0.00 0.00 0.00 3.10
393 2340 8.859517 AGTTTAGATATAAGCGTTGTTCTCTC 57.140 34.615 0.00 0.00 0.00 3.20
413 2360 7.391620 CCTATGGTTGAAGACACCTTAGTTTA 58.608 38.462 9.82 0.00 32.56 2.01
422 2369 2.789409 AGGCCTATGGTTGAAGACAC 57.211 50.000 1.29 0.00 0.00 3.67
434 2381 6.827727 AGACGATAAACACAATAAGGCCTAT 58.172 36.000 5.16 0.00 0.00 2.57
445 2392 3.965379 TTGGGCTAGACGATAAACACA 57.035 42.857 0.00 0.00 0.00 3.72
447 2394 4.933400 GTCTTTTGGGCTAGACGATAAACA 59.067 41.667 0.00 0.00 32.31 2.83
451 2398 2.433239 GGGTCTTTTGGGCTAGACGATA 59.567 50.000 0.00 0.00 41.30 2.92
472 2419 7.869429 GCCCATCCATGATAAGATAAAGTTTTG 59.131 37.037 0.00 0.00 0.00 2.44
550 2514 6.203338 ACAAACGGTTTGGTACATTACTAGTG 59.797 38.462 30.62 7.38 44.81 2.74
551 2515 6.203338 CACAAACGGTTTGGTACATTACTAGT 59.797 38.462 30.62 0.00 44.81 2.57
552 2516 6.203338 ACACAAACGGTTTGGTACATTACTAG 59.797 38.462 30.62 7.65 44.81 2.57
553 2517 6.054295 ACACAAACGGTTTGGTACATTACTA 58.946 36.000 30.62 0.00 44.81 1.82
554 2518 4.883006 ACACAAACGGTTTGGTACATTACT 59.117 37.500 30.62 9.54 44.81 2.24
558 2522 4.453751 ACTACACAAACGGTTTGGTACAT 58.546 39.130 30.62 17.28 44.81 2.29
569 2533 7.591006 AAATCATGGTACTACTACACAAACG 57.409 36.000 0.00 0.00 0.00 3.60
597 2720 3.243336 CGGCGCTAGTGTATAATCCTTC 58.757 50.000 7.64 0.00 0.00 3.46
601 2724 2.349297 AGCGGCGCTAGTGTATAATC 57.651 50.000 35.68 0.00 36.99 1.75
604 2727 2.880268 TCTTTAGCGGCGCTAGTGTATA 59.120 45.455 36.13 21.35 42.34 1.47
624 2751 4.451096 TGAGTACACGCTTTGATTTTCCTC 59.549 41.667 0.00 0.00 0.00 3.71
626 2753 4.742438 TGAGTACACGCTTTGATTTTCC 57.258 40.909 0.00 0.00 0.00 3.13
627 2754 5.106712 TGGATGAGTACACGCTTTGATTTTC 60.107 40.000 0.00 0.00 0.00 2.29
632 2759 2.299013 AGTGGATGAGTACACGCTTTGA 59.701 45.455 0.00 0.00 44.32 2.69
633 2760 2.688507 AGTGGATGAGTACACGCTTTG 58.311 47.619 0.00 0.00 44.32 2.77
690 2888 5.308825 GACTCTTCAGTCCTCATCCAAAAA 58.691 41.667 0.00 0.00 43.14 1.94
691 2889 4.561530 CGACTCTTCAGTCCTCATCCAAAA 60.562 45.833 0.00 0.00 45.81 2.44
692 2890 3.056536 CGACTCTTCAGTCCTCATCCAAA 60.057 47.826 0.00 0.00 45.81 3.28
693 2891 2.493675 CGACTCTTCAGTCCTCATCCAA 59.506 50.000 0.00 0.00 45.81 3.53
694 2892 2.095461 CGACTCTTCAGTCCTCATCCA 58.905 52.381 0.00 0.00 45.81 3.41
695 2893 1.202359 GCGACTCTTCAGTCCTCATCC 60.202 57.143 0.00 0.00 45.81 3.51
696 2894 1.474478 TGCGACTCTTCAGTCCTCATC 59.526 52.381 0.00 0.00 45.81 2.92
697 2895 1.203523 GTGCGACTCTTCAGTCCTCAT 59.796 52.381 0.00 0.00 45.81 2.90
698 2896 0.598562 GTGCGACTCTTCAGTCCTCA 59.401 55.000 0.00 0.00 45.81 3.86
699 2897 0.598562 TGTGCGACTCTTCAGTCCTC 59.401 55.000 0.00 0.00 45.81 3.71
700 2898 1.067283 CATGTGCGACTCTTCAGTCCT 60.067 52.381 0.00 0.00 45.81 3.85
707 2905 2.045926 GGCCCATGTGCGACTCTT 60.046 61.111 0.00 0.00 0.00 2.85
740 3161 4.849329 CGGCTCGCCTACGTGGAC 62.849 72.222 0.00 0.00 41.18 4.02
859 3332 4.489771 GGTGACGGGGATGGCAGG 62.490 72.222 0.00 0.00 0.00 4.85
885 3371 4.527816 TGGATTTGAAAAGTCTGGGGATTG 59.472 41.667 0.00 0.00 32.53 2.67
905 3391 1.539665 GGGGAGTTGGTGGTTTGGA 59.460 57.895 0.00 0.00 0.00 3.53
1089 3621 4.838486 CGCTCGCTCTCCACGTCC 62.838 72.222 0.00 0.00 0.00 4.79
1258 3801 0.391263 AGAACTCGGGGATTGTTCGC 60.391 55.000 0.00 0.00 43.19 4.70
1345 4041 5.151454 AGCTAGATATGGCTACTGGAAAGT 58.849 41.667 0.00 0.00 37.00 2.66
1346 4042 5.736951 AGCTAGATATGGCTACTGGAAAG 57.263 43.478 0.00 0.00 37.00 2.62
1347 4043 7.676043 AGATTAGCTAGATATGGCTACTGGAAA 59.324 37.037 4.75 0.00 40.21 3.13
1348 4044 7.123397 CAGATTAGCTAGATATGGCTACTGGAA 59.877 40.741 4.75 0.00 40.21 3.53
1349 4045 6.605194 CAGATTAGCTAGATATGGCTACTGGA 59.395 42.308 4.75 0.00 40.21 3.86
1350 4046 6.183360 CCAGATTAGCTAGATATGGCTACTGG 60.183 46.154 20.51 20.51 42.85 4.00
1351 4047 6.379703 ACCAGATTAGCTAGATATGGCTACTG 59.620 42.308 20.29 9.99 39.02 2.74
1352 4048 6.379703 CACCAGATTAGCTAGATATGGCTACT 59.620 42.308 20.29 0.00 39.02 2.57
1353 4049 6.378564 TCACCAGATTAGCTAGATATGGCTAC 59.621 42.308 20.29 0.00 39.02 3.58
1379 4095 4.283403 TGCCAGTTTTGCAGCGCC 62.283 61.111 2.29 0.00 34.05 6.53
1485 4216 1.783031 TAATCGAGCGGACGAGAGGC 61.783 60.000 9.15 0.00 45.22 4.70
1486 4217 0.661552 TTAATCGAGCGGACGAGAGG 59.338 55.000 9.15 0.00 45.22 3.69
1488 4219 1.660167 TCTTAATCGAGCGGACGAGA 58.340 50.000 9.15 0.00 45.22 4.04
1489 4220 2.470196 TTCTTAATCGAGCGGACGAG 57.530 50.000 9.15 0.00 45.22 4.18
1490 4221 3.431922 AATTCTTAATCGAGCGGACGA 57.568 42.857 6.22 6.22 46.04 4.20
1492 4223 6.823678 TCTTAAATTCTTAATCGAGCGGAC 57.176 37.500 0.00 0.00 0.00 4.79
1493 4224 6.423905 CCATCTTAAATTCTTAATCGAGCGGA 59.576 38.462 0.00 0.00 0.00 5.54
1495 4226 7.065894 CACCATCTTAAATTCTTAATCGAGCG 58.934 38.462 0.00 0.00 0.00 5.03
1496 4227 6.853362 GCACCATCTTAAATTCTTAATCGAGC 59.147 38.462 0.00 0.00 0.00 5.03
1499 4263 9.520204 AATTGCACCATCTTAAATTCTTAATCG 57.480 29.630 0.00 0.00 0.00 3.34
1507 4271 6.393990 TGCGTTAATTGCACCATCTTAAATT 58.606 32.000 1.61 0.00 37.44 1.82
1521 4317 1.136565 CCCAGCCGTGCGTTAATTG 59.863 57.895 0.00 0.00 0.00 2.32
1545 4345 1.135431 TGCATTTTACCGCACAGCATC 60.135 47.619 0.00 0.00 31.95 3.91
1549 4349 1.135689 GGACTGCATTTTACCGCACAG 60.136 52.381 0.00 0.00 33.75 3.66
1556 4356 1.663379 GGGCCGGGACTGCATTTTAC 61.663 60.000 2.18 0.00 41.47 2.01
1632 4440 0.386605 CTTGCGGGATCGATCGAGAG 60.387 60.000 23.84 14.42 39.00 3.20
1654 4462 3.181500 GGAAAGAAACAGCTCACGTTGTT 60.181 43.478 0.00 0.00 44.92 2.83
1655 4463 2.354821 GGAAAGAAACAGCTCACGTTGT 59.645 45.455 0.00 0.00 36.02 3.32
1720 4532 3.491792 GGAGATTCTGTGCCTGCTACTAC 60.492 52.174 0.00 0.00 0.00 2.73
1730 4545 2.167861 GGCGACGGAGATTCTGTGC 61.168 63.158 0.00 0.64 35.83 4.57
1748 4563 2.099263 AGCTACCACTGTAGTACATGCG 59.901 50.000 2.82 0.00 45.24 4.73
1775 4590 2.280186 GGGCGTCACCATCGATCC 60.280 66.667 0.00 0.00 42.05 3.36
1862 4699 1.676635 GGTAACCAACGGAAGGGCC 60.677 63.158 0.00 0.00 0.00 5.80
1863 4700 0.958876 CAGGTAACCAACGGAAGGGC 60.959 60.000 0.00 0.00 37.17 5.19
1864 4701 0.399075 ACAGGTAACCAACGGAAGGG 59.601 55.000 0.00 0.00 37.17 3.95
1867 4704 1.134037 AGCAACAGGTAACCAACGGAA 60.134 47.619 0.00 0.00 37.17 4.30
1913 4750 4.978580 GGGGATTTTACTCGTATGACGTAC 59.021 45.833 0.00 0.00 43.14 3.67
1914 4751 4.261155 CGGGGATTTTACTCGTATGACGTA 60.261 45.833 0.00 0.00 43.14 3.57
1915 4752 3.489738 CGGGGATTTTACTCGTATGACGT 60.490 47.826 0.00 0.00 43.14 4.34
1920 4760 1.682854 TCGCGGGGATTTTACTCGTAT 59.317 47.619 6.13 0.00 0.00 3.06
1981 5272 4.593956 GAACAGAAGGGTTCAGATTGGAT 58.406 43.478 0.00 0.00 45.07 3.41
2061 5371 4.262249 GGATCAGTACTACTCTGCCAATCC 60.262 50.000 0.00 0.00 31.55 3.01
2068 5378 4.171878 TCCAGGGATCAGTACTACTCTG 57.828 50.000 13.47 13.47 0.00 3.35
2069 5379 5.144100 CAATCCAGGGATCAGTACTACTCT 58.856 45.833 0.40 0.00 33.08 3.24
2070 5380 4.896482 ACAATCCAGGGATCAGTACTACTC 59.104 45.833 0.40 0.00 33.08 2.59
2071 5381 4.884961 ACAATCCAGGGATCAGTACTACT 58.115 43.478 0.40 0.00 33.08 2.57
2072 5382 5.615925 AACAATCCAGGGATCAGTACTAC 57.384 43.478 0.40 0.00 33.08 2.73
2073 5383 5.163447 CGAAACAATCCAGGGATCAGTACTA 60.163 44.000 0.40 0.00 33.08 1.82
2074 5384 4.383118 CGAAACAATCCAGGGATCAGTACT 60.383 45.833 0.40 0.00 33.08 2.73
2075 5385 3.871594 CGAAACAATCCAGGGATCAGTAC 59.128 47.826 0.40 0.00 33.08 2.73
2076 5386 3.772572 TCGAAACAATCCAGGGATCAGTA 59.227 43.478 0.40 0.00 33.08 2.74
2077 5387 2.571653 TCGAAACAATCCAGGGATCAGT 59.428 45.455 0.40 1.19 33.08 3.41
2078 5388 3.201290 CTCGAAACAATCCAGGGATCAG 58.799 50.000 0.40 0.56 33.08 2.90
2079 5389 2.571653 ACTCGAAACAATCCAGGGATCA 59.428 45.455 0.40 0.00 33.08 2.92
2080 5390 3.268023 ACTCGAAACAATCCAGGGATC 57.732 47.619 0.40 0.00 33.08 3.36
2081 5391 3.264450 AGAACTCGAAACAATCCAGGGAT 59.736 43.478 0.00 0.00 36.23 3.85
2082 5392 2.637872 AGAACTCGAAACAATCCAGGGA 59.362 45.455 0.00 0.00 0.00 4.20
2083 5393 3.003480 GAGAACTCGAAACAATCCAGGG 58.997 50.000 0.00 0.00 0.00 4.45
2097 5407 0.108804 TTGATGCCGGTCGAGAACTC 60.109 55.000 1.90 0.00 0.00 3.01
2098 5408 0.389948 GTTGATGCCGGTCGAGAACT 60.390 55.000 1.90 0.00 0.00 3.01
2099 5409 1.683790 CGTTGATGCCGGTCGAGAAC 61.684 60.000 1.90 0.00 0.00 3.01
2100 5410 1.445410 CGTTGATGCCGGTCGAGAA 60.445 57.895 1.90 0.00 0.00 2.87
2101 5411 2.180769 CGTTGATGCCGGTCGAGA 59.819 61.111 1.90 0.00 0.00 4.04
2102 5412 2.126071 ACGTTGATGCCGGTCGAG 60.126 61.111 1.90 0.00 0.00 4.04
2103 5413 2.431771 CACGTTGATGCCGGTCGA 60.432 61.111 1.90 0.00 0.00 4.20
2104 5414 2.431771 TCACGTTGATGCCGGTCG 60.432 61.111 1.90 1.63 0.00 4.79
2105 5415 1.374252 AGTCACGTTGATGCCGGTC 60.374 57.895 1.90 0.00 0.00 4.79
2106 5416 1.667830 CAGTCACGTTGATGCCGGT 60.668 57.895 1.90 0.00 0.00 5.28
2107 5417 0.389296 TACAGTCACGTTGATGCCGG 60.389 55.000 0.00 0.00 0.00 6.13
2108 5418 1.640428 ATACAGTCACGTTGATGCCG 58.360 50.000 0.00 0.00 0.00 5.69
2109 5419 2.476185 GCAATACAGTCACGTTGATGCC 60.476 50.000 0.00 0.00 0.00 4.40
2110 5420 2.774007 GCAATACAGTCACGTTGATGC 58.226 47.619 0.00 0.00 0.00 3.91
2111 5421 2.222796 CCGCAATACAGTCACGTTGATG 60.223 50.000 0.00 0.00 0.00 3.07
2112 5422 1.999735 CCGCAATACAGTCACGTTGAT 59.000 47.619 0.00 0.00 0.00 2.57
2113 5423 1.424403 CCGCAATACAGTCACGTTGA 58.576 50.000 0.00 0.00 0.00 3.18
2114 5424 0.442310 CCCGCAATACAGTCACGTTG 59.558 55.000 0.00 0.00 0.00 4.10
2115 5425 0.319083 TCCCGCAATACAGTCACGTT 59.681 50.000 0.00 0.00 0.00 3.99
2116 5426 0.535335 ATCCCGCAATACAGTCACGT 59.465 50.000 0.00 0.00 0.00 4.49
2117 5427 1.202417 AGATCCCGCAATACAGTCACG 60.202 52.381 0.00 0.00 0.00 4.35
2118 5428 2.474816 GAGATCCCGCAATACAGTCAC 58.525 52.381 0.00 0.00 0.00 3.67
2119 5429 1.412710 GGAGATCCCGCAATACAGTCA 59.587 52.381 0.00 0.00 0.00 3.41
2120 5430 1.689273 AGGAGATCCCGCAATACAGTC 59.311 52.381 0.00 0.00 40.87 3.51
2121 5431 1.794714 AGGAGATCCCGCAATACAGT 58.205 50.000 0.00 0.00 40.87 3.55
2122 5432 2.232452 CCTAGGAGATCCCGCAATACAG 59.768 54.545 1.05 0.00 40.87 2.74
2123 5433 2.248248 CCTAGGAGATCCCGCAATACA 58.752 52.381 1.05 0.00 40.87 2.29
2124 5434 2.231721 GACCTAGGAGATCCCGCAATAC 59.768 54.545 17.98 0.00 40.87 1.89
2125 5435 2.158370 TGACCTAGGAGATCCCGCAATA 60.158 50.000 17.98 0.00 40.87 1.90
2126 5436 1.343069 GACCTAGGAGATCCCGCAAT 58.657 55.000 17.98 0.00 40.87 3.56
2127 5437 0.032515 TGACCTAGGAGATCCCGCAA 60.033 55.000 17.98 0.00 40.87 4.85
2128 5438 0.755698 GTGACCTAGGAGATCCCGCA 60.756 60.000 17.98 0.00 40.87 5.69
2129 5439 1.797211 CGTGACCTAGGAGATCCCGC 61.797 65.000 17.98 3.05 40.87 6.13
2130 5440 1.797211 GCGTGACCTAGGAGATCCCG 61.797 65.000 17.98 7.09 40.87 5.14
2131 5441 0.755698 TGCGTGACCTAGGAGATCCC 60.756 60.000 17.98 0.00 36.42 3.85
2132 5442 0.671251 CTGCGTGACCTAGGAGATCC 59.329 60.000 17.98 1.09 0.00 3.36
2133 5443 0.031449 GCTGCGTGACCTAGGAGATC 59.969 60.000 17.98 2.94 0.00 2.75
2134 5444 1.395826 GGCTGCGTGACCTAGGAGAT 61.396 60.000 17.98 0.00 0.00 2.75
2135 5445 2.052690 GGCTGCGTGACCTAGGAGA 61.053 63.158 17.98 0.00 0.00 3.71
2136 5446 2.496817 GGCTGCGTGACCTAGGAG 59.503 66.667 17.98 1.61 0.00 3.69
2137 5447 3.449227 CGGCTGCGTGACCTAGGA 61.449 66.667 17.98 0.00 0.00 2.94
2153 5463 3.724914 GAAAGAGGAGGAGGCGGCG 62.725 68.421 0.51 0.51 0.00 6.46
2154 5464 2.185310 TTGAAAGAGGAGGAGGCGGC 62.185 60.000 0.00 0.00 0.00 6.53
2155 5465 0.324943 TTTGAAAGAGGAGGAGGCGG 59.675 55.000 0.00 0.00 0.00 6.13
2156 5466 2.185004 TTTTGAAAGAGGAGGAGGCG 57.815 50.000 0.00 0.00 0.00 5.52
2174 5484 5.086621 ACAAGGCATGAACCCTATCTTTTT 58.913 37.500 0.00 0.00 30.93 1.94
2175 5485 4.677182 ACAAGGCATGAACCCTATCTTTT 58.323 39.130 0.00 0.00 30.93 2.27
2176 5486 4.322057 ACAAGGCATGAACCCTATCTTT 57.678 40.909 0.00 0.00 30.93 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.