Multiple sequence alignment - TraesCS2A01G430900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G430900 chr2A 100.000 4163 0 0 1 4163 684239829 684243991 0.000000e+00 7688.0
1 TraesCS2A01G430900 chr2A 100.000 2458 0 0 4445 6902 684244273 684246730 0.000000e+00 4540.0
2 TraesCS2A01G430900 chr2A 98.790 1405 13 3 2741 4143 68252266 68253668 0.000000e+00 2497.0
3 TraesCS2A01G430900 chr2D 93.543 1967 77 16 4445 6372 540817240 540819195 0.000000e+00 2883.0
4 TraesCS2A01G430900 chr2D 89.627 1369 99 29 1397 2742 540815845 540817193 0.000000e+00 1701.0
5 TraesCS2A01G430900 chr2D 86.506 1082 49 35 268 1330 540814823 540815826 0.000000e+00 1099.0
6 TraesCS2A01G430900 chr2D 88.433 536 18 10 6400 6902 540824082 540824606 2.130000e-169 606.0
7 TraesCS2A01G430900 chr2D 85.915 213 17 6 52 262 540814576 540814777 1.510000e-51 215.0
8 TraesCS2A01G430900 chr2D 89.130 46 3 2 6426 6470 509940543 509940499 1.000000e-03 56.5
9 TraesCS2A01G430900 chr4B 98.504 1404 15 3 2743 4143 299464575 299463175 0.000000e+00 2471.0
10 TraesCS2A01G430900 chr4B 97.792 1404 30 1 2741 4143 241709568 241710971 0.000000e+00 2420.0
11 TraesCS2A01G430900 chr4B 97.507 1404 20 4 2741 4143 220391020 220392409 0.000000e+00 2385.0
12 TraesCS2A01G430900 chr2B 97.722 1405 29 2 2741 4142 742032174 742033578 0.000000e+00 2414.0
13 TraesCS2A01G430900 chr2B 91.363 1401 77 16 5536 6902 646213039 646214429 0.000000e+00 1877.0
14 TraesCS2A01G430900 chr2B 95.095 1101 41 6 4445 5543 646211915 646213004 0.000000e+00 1722.0
15 TraesCS2A01G430900 chr2B 88.256 1405 115 37 1367 2742 646210482 646211865 0.000000e+00 1635.0
16 TraesCS2A01G430900 chr2B 94.828 406 21 0 925 1330 646210086 646210491 9.770000e-178 634.0
17 TraesCS2A01G430900 chr2B 84.656 378 19 23 394 765 646209296 646209640 2.380000e-89 340.0
18 TraesCS2A01G430900 chr1B 95.085 1404 59 3 2741 4143 27292408 27293802 0.000000e+00 2202.0
19 TraesCS2A01G430900 chr1B 88.933 253 25 3 1748 1999 129378967 129378717 6.720000e-80 309.0
20 TraesCS2A01G430900 chr7B 94.511 1421 71 5 2728 4143 684323251 684321833 0.000000e+00 2185.0
21 TraesCS2A01G430900 chr5B 94.294 1402 60 8 2743 4143 56366773 56365391 0.000000e+00 2128.0
22 TraesCS2A01G430900 chr7A 92.817 1406 87 6 2740 4143 193460520 193459127 0.000000e+00 2025.0
23 TraesCS2A01G430900 chr7A 100.000 28 0 0 6425 6452 629012475 629012448 1.300000e-02 52.8
24 TraesCS2A01G430900 chr6A 92.760 221 16 0 1779 1999 390566556 390566776 3.110000e-83 320.0
25 TraesCS2A01G430900 chr5A 92.308 221 17 0 1779 1999 219061110 219060890 1.450000e-81 315.0
26 TraesCS2A01G430900 chr5A 91.855 221 18 0 1779 1999 193890357 193890577 6.720000e-80 309.0
27 TraesCS2A01G430900 chr3B 92.308 221 17 0 1779 1999 409336668 409336448 1.450000e-81 315.0
28 TraesCS2A01G430900 chr4A 93.233 133 9 0 1867 1999 666695381 666695249 5.460000e-46 196.0
29 TraesCS2A01G430900 chr3A 93.043 115 8 0 1779 1893 511044076 511044190 1.190000e-37 169.0
30 TraesCS2A01G430900 chr1A 92.174 115 9 0 1779 1893 278490349 278490235 5.540000e-36 163.0
31 TraesCS2A01G430900 chr6B 95.000 40 0 2 6184 6222 554815933 554815895 2.080000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G430900 chr2A 684239829 684246730 6901 False 6114.0 7688 100.00000 1 6902 2 chr2A.!!$F2 6901
1 TraesCS2A01G430900 chr2A 68252266 68253668 1402 False 2497.0 2497 98.79000 2741 4143 1 chr2A.!!$F1 1402
2 TraesCS2A01G430900 chr2D 540814576 540819195 4619 False 1474.5 2883 88.89775 52 6372 4 chr2D.!!$F2 6320
3 TraesCS2A01G430900 chr2D 540824082 540824606 524 False 606.0 606 88.43300 6400 6902 1 chr2D.!!$F1 502
4 TraesCS2A01G430900 chr4B 299463175 299464575 1400 True 2471.0 2471 98.50400 2743 4143 1 chr4B.!!$R1 1400
5 TraesCS2A01G430900 chr4B 241709568 241710971 1403 False 2420.0 2420 97.79200 2741 4143 1 chr4B.!!$F2 1402
6 TraesCS2A01G430900 chr4B 220391020 220392409 1389 False 2385.0 2385 97.50700 2741 4143 1 chr4B.!!$F1 1402
7 TraesCS2A01G430900 chr2B 742032174 742033578 1404 False 2414.0 2414 97.72200 2741 4142 1 chr2B.!!$F1 1401
8 TraesCS2A01G430900 chr2B 646209296 646214429 5133 False 1241.6 1877 90.83960 394 6902 5 chr2B.!!$F2 6508
9 TraesCS2A01G430900 chr1B 27292408 27293802 1394 False 2202.0 2202 95.08500 2741 4143 1 chr1B.!!$F1 1402
10 TraesCS2A01G430900 chr7B 684321833 684323251 1418 True 2185.0 2185 94.51100 2728 4143 1 chr7B.!!$R1 1415
11 TraesCS2A01G430900 chr5B 56365391 56366773 1382 True 2128.0 2128 94.29400 2743 4143 1 chr5B.!!$R1 1400
12 TraesCS2A01G430900 chr7A 193459127 193460520 1393 True 2025.0 2025 92.81700 2740 4143 1 chr7A.!!$R1 1403

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.190815 AGGGAGGGGTTGTTGCATTT 59.809 50.0 0.0 0.0 0.0 2.32 F
1334 1696 0.030235 TTCGAGGTGCGTATCGGATG 59.970 55.0 0.0 0.0 41.8 3.51 F
1523 1889 0.173255 AGTGCATAACCATTTGCGGC 59.827 50.0 0.0 0.0 41.8 6.53 F
1524 1890 0.173255 GTGCATAACCATTTGCGGCT 59.827 50.0 0.0 0.0 41.8 5.52 F
1746 2122 0.250513 AAGGCATCACGGAGAGAACC 59.749 55.0 0.0 0.0 0.0 3.62 F
1831 2208 0.319728 TGTCTTCTGCTGCTGTCTCC 59.680 55.0 0.0 0.0 0.0 3.71 F
4153 4572 0.690762 GCGGGGGCTATCTTCCAATA 59.309 55.0 0.0 0.0 0.0 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1505 1871 0.173255 AGCCGCAAATGGTTATGCAC 59.827 50.000 0.00 0.00 42.68 4.57 R
2260 2639 1.202687 TGTGGACCTGTCAGAAAGCAG 60.203 52.381 0.00 0.00 0.00 4.24 R
2840 3231 1.374758 TCGTGTGTGTGTGTGTGCA 60.375 52.632 0.00 0.00 0.00 4.57 R
3704 4106 0.389426 CGCTGGGTTAGTAAGCACGT 60.389 55.000 13.76 0.00 36.73 4.49 R
4478 4897 7.750229 ATTTAGAGACTTTGTTGAGATGCAA 57.250 32.000 0.00 0.00 0.00 4.08 R
4625 5044 6.511416 GCAGAGATATGTCTGACAACTGTAT 58.489 40.000 28.90 7.89 46.02 2.29 R
6724 7267 0.735471 GAAGCCGCCATTTCCTTCTC 59.265 55.000 0.00 0.00 32.90 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.633246 AGGGAGGGAGGGGTTGTT 59.367 61.111 0.00 0.00 0.00 2.83
18 19 1.852626 AGGGAGGGAGGGGTTGTTG 60.853 63.158 0.00 0.00 0.00 3.33
19 20 2.035783 GGAGGGAGGGGTTGTTGC 59.964 66.667 0.00 0.00 0.00 4.17
20 21 2.840753 GGAGGGAGGGGTTGTTGCA 61.841 63.158 0.00 0.00 0.00 4.08
21 22 1.384191 GAGGGAGGGGTTGTTGCAT 59.616 57.895 0.00 0.00 0.00 3.96
22 23 0.251787 GAGGGAGGGGTTGTTGCATT 60.252 55.000 0.00 0.00 0.00 3.56
23 24 0.190815 AGGGAGGGGTTGTTGCATTT 59.809 50.000 0.00 0.00 0.00 2.32
24 25 1.431243 AGGGAGGGGTTGTTGCATTTA 59.569 47.619 0.00 0.00 0.00 1.40
25 26 1.548719 GGGAGGGGTTGTTGCATTTAC 59.451 52.381 0.00 0.00 0.00 2.01
26 27 2.243810 GGAGGGGTTGTTGCATTTACA 58.756 47.619 0.00 0.00 0.00 2.41
27 28 2.029380 GGAGGGGTTGTTGCATTTACAC 60.029 50.000 0.00 0.00 0.00 2.90
28 29 2.625790 GAGGGGTTGTTGCATTTACACA 59.374 45.455 0.00 0.00 0.00 3.72
29 30 3.238597 AGGGGTTGTTGCATTTACACAT 58.761 40.909 0.00 0.00 0.00 3.21
30 31 4.411927 AGGGGTTGTTGCATTTACACATA 58.588 39.130 0.00 0.00 0.00 2.29
31 32 4.462483 AGGGGTTGTTGCATTTACACATAG 59.538 41.667 0.00 0.00 0.00 2.23
32 33 4.219725 GGGGTTGTTGCATTTACACATAGT 59.780 41.667 0.00 0.00 0.00 2.12
33 34 5.416326 GGGGTTGTTGCATTTACACATAGTA 59.584 40.000 0.00 0.00 0.00 1.82
34 35 6.404293 GGGGTTGTTGCATTTACACATAGTAG 60.404 42.308 0.00 0.00 33.43 2.57
35 36 6.150474 GGGTTGTTGCATTTACACATAGTAGT 59.850 38.462 0.00 0.00 33.43 2.73
36 37 7.334921 GGGTTGTTGCATTTACACATAGTAGTA 59.665 37.037 0.00 0.00 33.43 1.82
37 38 8.388103 GGTTGTTGCATTTACACATAGTAGTAG 58.612 37.037 0.00 0.00 33.43 2.57
38 39 9.146984 GTTGTTGCATTTACACATAGTAGTAGA 57.853 33.333 0.00 0.00 33.43 2.59
39 40 8.926715 TGTTGCATTTACACATAGTAGTAGAG 57.073 34.615 0.00 0.00 33.43 2.43
40 41 8.745590 TGTTGCATTTACACATAGTAGTAGAGA 58.254 33.333 0.00 0.00 33.43 3.10
41 42 9.751542 GTTGCATTTACACATAGTAGTAGAGAT 57.248 33.333 0.00 0.00 33.43 2.75
42 43 9.750125 TTGCATTTACACATAGTAGTAGAGATG 57.250 33.333 0.00 0.00 33.43 2.90
43 44 9.131791 TGCATTTACACATAGTAGTAGAGATGA 57.868 33.333 0.00 0.00 33.43 2.92
44 45 9.619316 GCATTTACACATAGTAGTAGAGATGAG 57.381 37.037 0.00 0.00 33.43 2.90
45 46 9.619316 CATTTACACATAGTAGTAGAGATGAGC 57.381 37.037 0.00 0.00 33.43 4.26
46 47 8.747538 TTTACACATAGTAGTAGAGATGAGCA 57.252 34.615 0.00 0.00 33.43 4.26
47 48 8.747538 TTACACATAGTAGTAGAGATGAGCAA 57.252 34.615 0.00 0.00 33.43 3.91
48 49 7.646548 ACACATAGTAGTAGAGATGAGCAAA 57.353 36.000 0.00 0.00 0.00 3.68
49 50 8.067751 ACACATAGTAGTAGAGATGAGCAAAA 57.932 34.615 0.00 0.00 0.00 2.44
50 51 8.531982 ACACATAGTAGTAGAGATGAGCAAAAA 58.468 33.333 0.00 0.00 0.00 1.94
101 102 9.444600 AGTAATTCTTTTGTAATCGGTACATGT 57.555 29.630 2.69 2.69 42.37 3.21
105 106 8.836268 TTCTTTTGTAATCGGTACATGTAACT 57.164 30.769 18.49 2.97 42.37 2.24
106 107 8.246908 TCTTTTGTAATCGGTACATGTAACTG 57.753 34.615 18.49 11.94 42.37 3.16
107 108 8.089597 TCTTTTGTAATCGGTACATGTAACTGA 58.910 33.333 18.49 16.38 42.37 3.41
108 109 8.604640 TTTTGTAATCGGTACATGTAACTGAA 57.395 30.769 18.49 4.83 42.37 3.02
109 110 8.604640 TTTGTAATCGGTACATGTAACTGAAA 57.395 30.769 18.49 7.83 42.37 2.69
110 111 7.821595 TGTAATCGGTACATGTAACTGAAAG 57.178 36.000 18.49 3.06 37.81 2.62
111 112 5.796350 AATCGGTACATGTAACTGAAAGC 57.204 39.130 18.49 0.63 37.60 3.51
123 124 4.595762 AACTGAAAGCATGCACAATTCT 57.404 36.364 21.98 0.00 37.60 2.40
136 137 9.467258 GCATGCACAATTCTACAATAAATACAT 57.533 29.630 14.21 0.00 0.00 2.29
155 157 0.843984 TTTGGATTCCGAGGATCCCC 59.156 55.000 8.55 0.50 33.65 4.81
166 168 3.008704 CCGAGGATCCCCGGTTATAAAAT 59.991 47.826 25.65 0.00 40.78 1.82
172 174 5.778241 GGATCCCCGGTTATAAAATGGAAAT 59.222 40.000 0.00 0.00 0.00 2.17
179 181 5.695816 CGGTTATAAAATGGAAATGCATGGG 59.304 40.000 0.00 0.00 0.00 4.00
216 219 2.734175 CGATCTGAAACCGTCCGATCAA 60.734 50.000 8.03 0.00 43.59 2.57
217 220 2.823924 TCTGAAACCGTCCGATCAAA 57.176 45.000 0.00 0.00 0.00 2.69
218 221 3.328382 TCTGAAACCGTCCGATCAAAT 57.672 42.857 0.00 0.00 0.00 2.32
219 222 3.259064 TCTGAAACCGTCCGATCAAATC 58.741 45.455 0.00 0.00 0.00 2.17
232 235 0.679640 TCAAATCAATCCGGCGGCTT 60.680 50.000 23.83 16.57 0.00 4.35
254 257 3.764049 GAAGCGTGCGTCGTCACC 61.764 66.667 12.18 7.01 42.13 4.02
263 266 4.612412 GTCGTCACCCCGTGCCAA 62.612 66.667 0.00 0.00 32.98 4.52
264 267 4.308458 TCGTCACCCCGTGCCAAG 62.308 66.667 0.00 0.00 32.98 3.61
266 269 4.947147 GTCACCCCGTGCCAAGCA 62.947 66.667 0.00 0.00 35.60 3.91
324 366 2.201914 GACGCGTCGGTTACCAAACG 62.202 60.000 25.19 18.20 36.39 3.60
352 394 4.068280 CGCCCCCGTTGTTTTACT 57.932 55.556 0.00 0.00 0.00 2.24
353 395 1.871077 CGCCCCCGTTGTTTTACTC 59.129 57.895 0.00 0.00 0.00 2.59
354 396 1.579964 CGCCCCCGTTGTTTTACTCC 61.580 60.000 0.00 0.00 0.00 3.85
355 397 0.251033 GCCCCCGTTGTTTTACTCCT 60.251 55.000 0.00 0.00 0.00 3.69
356 398 1.003464 GCCCCCGTTGTTTTACTCCTA 59.997 52.381 0.00 0.00 0.00 2.94
357 399 2.703416 CCCCCGTTGTTTTACTCCTAC 58.297 52.381 0.00 0.00 0.00 3.18
358 400 2.303890 CCCCCGTTGTTTTACTCCTACT 59.696 50.000 0.00 0.00 0.00 2.57
359 401 3.515104 CCCCCGTTGTTTTACTCCTACTA 59.485 47.826 0.00 0.00 0.00 1.82
360 402 4.498241 CCCCGTTGTTTTACTCCTACTAC 58.502 47.826 0.00 0.00 0.00 2.73
361 403 4.221482 CCCCGTTGTTTTACTCCTACTACT 59.779 45.833 0.00 0.00 0.00 2.57
362 404 5.166398 CCCGTTGTTTTACTCCTACTACTG 58.834 45.833 0.00 0.00 0.00 2.74
363 405 4.624452 CCGTTGTTTTACTCCTACTACTGC 59.376 45.833 0.00 0.00 0.00 4.40
364 406 5.467705 CGTTGTTTTACTCCTACTACTGCT 58.532 41.667 0.00 0.00 0.00 4.24
365 407 5.572126 CGTTGTTTTACTCCTACTACTGCTC 59.428 44.000 0.00 0.00 0.00 4.26
366 408 5.656213 TGTTTTACTCCTACTACTGCTCC 57.344 43.478 0.00 0.00 0.00 4.70
367 409 5.331069 TGTTTTACTCCTACTACTGCTCCT 58.669 41.667 0.00 0.00 0.00 3.69
368 410 5.185249 TGTTTTACTCCTACTACTGCTCCTG 59.815 44.000 0.00 0.00 0.00 3.86
369 411 1.770294 ACTCCTACTACTGCTCCTGC 58.230 55.000 0.00 0.00 40.20 4.85
370 412 1.286553 ACTCCTACTACTGCTCCTGCT 59.713 52.381 0.00 0.00 40.48 4.24
371 413 2.510382 ACTCCTACTACTGCTCCTGCTA 59.490 50.000 0.00 0.00 40.48 3.49
372 414 2.882137 CTCCTACTACTGCTCCTGCTAC 59.118 54.545 0.00 0.00 40.48 3.58
386 428 5.300792 GCTCCTGCTACTACTAGTCTTTGAT 59.699 44.000 0.00 0.00 36.03 2.57
387 429 6.183360 GCTCCTGCTACTACTAGTCTTTGATT 60.183 42.308 0.00 0.00 36.03 2.57
388 430 7.101652 TCCTGCTACTACTAGTCTTTGATTG 57.898 40.000 0.00 0.00 0.00 2.67
389 431 6.890268 TCCTGCTACTACTAGTCTTTGATTGA 59.110 38.462 0.00 0.00 0.00 2.57
390 432 7.067615 TCCTGCTACTACTAGTCTTTGATTGAG 59.932 40.741 0.00 0.00 0.00 3.02
391 433 7.067615 CCTGCTACTACTAGTCTTTGATTGAGA 59.932 40.741 0.00 0.00 0.00 3.27
392 434 7.763356 TGCTACTACTAGTCTTTGATTGAGAC 58.237 38.462 0.00 0.00 42.99 3.36
393 435 6.908284 GCTACTACTAGTCTTTGATTGAGACG 59.092 42.308 0.00 0.00 46.29 4.18
394 436 7.201626 GCTACTACTAGTCTTTGATTGAGACGA 60.202 40.741 0.00 0.00 46.29 4.20
395 437 7.079182 ACTACTAGTCTTTGATTGAGACGAG 57.921 40.000 0.00 11.22 46.29 4.18
396 438 6.879993 ACTACTAGTCTTTGATTGAGACGAGA 59.120 38.462 17.30 4.75 44.58 4.04
420 462 3.595819 GCATGTTCCAGCCACCTC 58.404 61.111 0.00 0.00 0.00 3.85
439 481 1.340248 TCCGATCGGCTTCCATAACTC 59.660 52.381 29.62 0.00 34.68 3.01
440 482 1.605712 CCGATCGGCTTCCATAACTCC 60.606 57.143 23.37 0.00 0.00 3.85
441 483 1.605712 CGATCGGCTTCCATAACTCCC 60.606 57.143 7.38 0.00 0.00 4.30
442 484 0.393077 ATCGGCTTCCATAACTCCCG 59.607 55.000 0.00 0.00 37.21 5.14
443 485 0.974010 TCGGCTTCCATAACTCCCGT 60.974 55.000 0.00 0.00 37.17 5.28
484 538 6.532365 GTTCAGGAACAAACAAACAAACAA 57.468 33.333 7.27 0.00 40.84 2.83
485 539 6.949449 GTTCAGGAACAAACAAACAAACAAA 58.051 32.000 7.27 0.00 40.84 2.83
486 540 6.532365 TCAGGAACAAACAAACAAACAAAC 57.468 33.333 0.00 0.00 0.00 2.93
487 541 5.175856 TCAGGAACAAACAAACAAACAAACG 59.824 36.000 0.00 0.00 0.00 3.60
488 542 4.449405 AGGAACAAACAAACAAACAAACGG 59.551 37.500 0.00 0.00 0.00 4.44
489 543 4.448060 GGAACAAACAAACAAACAAACGGA 59.552 37.500 0.00 0.00 0.00 4.69
490 544 5.050295 GGAACAAACAAACAAACAAACGGAA 60.050 36.000 0.00 0.00 0.00 4.30
491 545 5.331657 ACAAACAAACAAACAAACGGAAC 57.668 34.783 0.00 0.00 0.00 3.62
550 606 2.419198 CCCGCCGATCCTCTGAAG 59.581 66.667 0.00 0.00 0.00 3.02
583 639 6.491714 TTTTTCTTTCCATCCATCCAACAA 57.508 33.333 0.00 0.00 0.00 2.83
584 640 6.684897 TTTTCTTTCCATCCATCCAACAAT 57.315 33.333 0.00 0.00 0.00 2.71
585 641 6.684897 TTTCTTTCCATCCATCCAACAATT 57.315 33.333 0.00 0.00 0.00 2.32
701 759 4.201122 GCTGCCATCCTCCCCCAG 62.201 72.222 0.00 0.00 0.00 4.45
714 772 3.204827 CCCAGCCGAAATCCGCTG 61.205 66.667 14.32 14.32 39.97 5.18
715 773 3.880846 CCAGCCGAAATCCGCTGC 61.881 66.667 15.42 0.00 39.41 5.25
716 774 3.126879 CAGCCGAAATCCGCTGCA 61.127 61.111 10.08 0.00 36.32 4.41
717 775 2.821366 AGCCGAAATCCGCTGCAG 60.821 61.111 10.11 10.11 36.84 4.41
718 776 4.543084 GCCGAAATCCGCTGCAGC 62.543 66.667 29.12 29.12 36.84 5.25
772 833 4.172512 CTCTGGCTGCGGGCTGAT 62.173 66.667 25.51 0.00 42.84 2.90
773 834 3.694058 CTCTGGCTGCGGGCTGATT 62.694 63.158 25.51 0.00 42.84 2.57
774 835 3.515286 CTGGCTGCGGGCTGATTG 61.515 66.667 21.03 1.80 41.46 2.67
775 836 3.982316 CTGGCTGCGGGCTGATTGA 62.982 63.158 21.03 0.00 41.46 2.57
776 837 2.517875 GGCTGCGGGCTGATTGAT 60.518 61.111 12.72 0.00 41.46 2.57
777 838 2.123428 GGCTGCGGGCTGATTGATT 61.123 57.895 12.72 0.00 41.46 2.57
778 839 1.065273 GCTGCGGGCTGATTGATTG 59.935 57.895 0.00 0.00 38.06 2.67
779 840 1.065273 CTGCGGGCTGATTGATTGC 59.935 57.895 0.00 0.00 0.00 3.56
780 841 2.345880 CTGCGGGCTGATTGATTGCC 62.346 60.000 0.00 0.00 45.42 4.52
781 842 2.123428 GCGGGCTGATTGATTGCCT 61.123 57.895 0.00 0.00 45.45 4.75
782 843 1.669999 GCGGGCTGATTGATTGCCTT 61.670 55.000 0.00 0.00 45.45 4.35
783 844 0.383231 CGGGCTGATTGATTGCCTTC 59.617 55.000 0.00 0.00 45.45 3.46
784 845 0.749049 GGGCTGATTGATTGCCTTCC 59.251 55.000 0.00 0.00 45.45 3.46
785 846 1.687368 GGGCTGATTGATTGCCTTCCT 60.687 52.381 0.00 0.00 45.45 3.36
806 867 0.464452 CCGGTAAGGAACCCTAGCTG 59.536 60.000 0.00 0.00 46.62 4.24
808 869 1.581223 GGTAAGGAACCCTAGCTGGT 58.419 55.000 0.00 0.00 43.16 4.00
828 891 1.079438 AGCTCTTCGTCTCCCCCTT 59.921 57.895 0.00 0.00 0.00 3.95
860 923 0.524414 TTCGAGCGATCAAGAACCGA 59.476 50.000 0.00 0.00 0.00 4.69
868 931 1.208293 GATCAAGAACCGAAGCCCTCT 59.792 52.381 0.00 0.00 0.00 3.69
871 934 1.554583 AAGAACCGAAGCCCTCTCCC 61.555 60.000 0.00 0.00 0.00 4.30
904 967 3.428282 GCGGCCGATTCGTTTGGT 61.428 61.111 33.48 0.00 0.00 3.67
956 1318 3.781770 GATCTGGGCTCTGACGGCG 62.782 68.421 4.80 4.80 0.00 6.46
1121 1483 3.534056 CTACCACTACCCGCCCCG 61.534 72.222 0.00 0.00 0.00 5.73
1230 1592 2.267006 CACATGCTCTCCACGCCT 59.733 61.111 0.00 0.00 0.00 5.52
1330 1692 2.121116 ATTCTTCGAGGTGCGTATCG 57.879 50.000 0.00 0.00 41.80 2.92
1331 1693 0.099968 TTCTTCGAGGTGCGTATCGG 59.900 55.000 0.00 0.00 41.80 4.18
1332 1694 0.745486 TCTTCGAGGTGCGTATCGGA 60.745 55.000 0.00 0.00 41.80 4.55
1333 1695 0.311165 CTTCGAGGTGCGTATCGGAT 59.689 55.000 0.00 0.00 41.80 4.18
1334 1696 0.030235 TTCGAGGTGCGTATCGGATG 59.970 55.000 0.00 0.00 41.80 3.51
1335 1697 2.016704 CGAGGTGCGTATCGGATGC 61.017 63.158 0.00 0.00 40.84 3.91
1339 1701 2.802106 TGCGTATCGGATGCACGA 59.198 55.556 15.43 1.59 45.41 4.35
1341 1703 0.869880 TGCGTATCGGATGCACGAAG 60.870 55.000 15.43 0.65 45.41 3.79
1344 1706 2.921069 GCGTATCGGATGCACGAAGTAT 60.921 50.000 15.43 0.00 46.92 2.12
1345 1707 3.305964 CGTATCGGATGCACGAAGTATT 58.694 45.455 7.37 0.00 46.92 1.89
1346 1708 3.119628 CGTATCGGATGCACGAAGTATTG 59.880 47.826 7.37 0.00 46.92 1.90
1347 1709 2.665649 TCGGATGCACGAAGTATTGT 57.334 45.000 0.00 0.00 41.61 2.71
1348 1710 2.967362 TCGGATGCACGAAGTATTGTT 58.033 42.857 0.00 0.00 41.61 2.83
1349 1711 2.927477 TCGGATGCACGAAGTATTGTTC 59.073 45.455 0.00 0.00 41.61 3.18
1350 1712 2.930040 CGGATGCACGAAGTATTGTTCT 59.070 45.455 0.00 0.00 41.61 3.01
1351 1713 3.370978 CGGATGCACGAAGTATTGTTCTT 59.629 43.478 0.00 0.00 41.61 2.52
1352 1714 4.142902 CGGATGCACGAAGTATTGTTCTTT 60.143 41.667 0.00 0.00 41.61 2.52
1353 1715 5.616866 CGGATGCACGAAGTATTGTTCTTTT 60.617 40.000 0.00 0.00 41.61 2.27
1354 1716 5.569059 GGATGCACGAAGTATTGTTCTTTTG 59.431 40.000 0.00 0.00 41.61 2.44
1355 1717 4.854399 TGCACGAAGTATTGTTCTTTTGG 58.146 39.130 0.00 0.00 41.61 3.28
1356 1718 4.336993 TGCACGAAGTATTGTTCTTTTGGT 59.663 37.500 0.00 0.00 41.61 3.67
1357 1719 4.909880 GCACGAAGTATTGTTCTTTTGGTC 59.090 41.667 0.00 0.00 41.61 4.02
1358 1720 5.504994 GCACGAAGTATTGTTCTTTTGGTCA 60.505 40.000 0.00 0.00 41.61 4.02
1359 1721 6.136071 CACGAAGTATTGTTCTTTTGGTCAG 58.864 40.000 0.00 0.00 41.61 3.51
1360 1722 5.238650 ACGAAGTATTGTTCTTTTGGTCAGG 59.761 40.000 0.00 0.00 41.94 3.86
1361 1723 5.468746 CGAAGTATTGTTCTTTTGGTCAGGA 59.531 40.000 0.00 0.00 0.00 3.86
1362 1724 6.149474 CGAAGTATTGTTCTTTTGGTCAGGAT 59.851 38.462 0.00 0.00 0.00 3.24
1363 1725 7.308589 CGAAGTATTGTTCTTTTGGTCAGGATT 60.309 37.037 0.00 0.00 0.00 3.01
1364 1726 7.839680 AGTATTGTTCTTTTGGTCAGGATTT 57.160 32.000 0.00 0.00 0.00 2.17
1365 1727 8.250143 AGTATTGTTCTTTTGGTCAGGATTTT 57.750 30.769 0.00 0.00 0.00 1.82
1366 1728 8.143835 AGTATTGTTCTTTTGGTCAGGATTTTG 58.856 33.333 0.00 0.00 0.00 2.44
1367 1729 5.275067 TGTTCTTTTGGTCAGGATTTTGG 57.725 39.130 0.00 0.00 0.00 3.28
1368 1730 4.714308 TGTTCTTTTGGTCAGGATTTTGGT 59.286 37.500 0.00 0.00 0.00 3.67
1369 1731 4.935352 TCTTTTGGTCAGGATTTTGGTG 57.065 40.909 0.00 0.00 0.00 4.17
1370 1732 3.069443 TCTTTTGGTCAGGATTTTGGTGC 59.931 43.478 0.00 0.00 0.00 5.01
1371 1733 1.337118 TTGGTCAGGATTTTGGTGCC 58.663 50.000 0.00 0.00 0.00 5.01
1372 1734 0.187117 TGGTCAGGATTTTGGTGCCA 59.813 50.000 0.00 0.00 0.00 4.92
1373 1735 1.203162 TGGTCAGGATTTTGGTGCCAT 60.203 47.619 0.00 0.00 0.00 4.40
1374 1736 2.042297 TGGTCAGGATTTTGGTGCCATA 59.958 45.455 0.00 0.00 0.00 2.74
1375 1737 2.427095 GGTCAGGATTTTGGTGCCATAC 59.573 50.000 0.00 0.00 0.00 2.39
1376 1738 2.097466 GTCAGGATTTTGGTGCCATACG 59.903 50.000 0.00 0.00 0.00 3.06
1377 1739 2.026729 TCAGGATTTTGGTGCCATACGA 60.027 45.455 0.00 0.00 0.00 3.43
1378 1740 2.951642 CAGGATTTTGGTGCCATACGAT 59.048 45.455 0.00 0.00 0.00 3.73
1379 1741 3.003689 CAGGATTTTGGTGCCATACGATC 59.996 47.826 0.00 0.00 0.00 3.69
1380 1742 2.032030 GGATTTTGGTGCCATACGATCG 60.032 50.000 14.88 14.88 0.00 3.69
1381 1743 2.388310 TTTTGGTGCCATACGATCGA 57.612 45.000 24.34 5.87 0.00 3.59
1382 1744 2.613026 TTTGGTGCCATACGATCGAT 57.387 45.000 24.34 8.18 0.00 3.59
1383 1745 2.613026 TTGGTGCCATACGATCGATT 57.387 45.000 24.34 5.34 0.00 3.34
1384 1746 3.737032 TTGGTGCCATACGATCGATTA 57.263 42.857 24.34 4.82 0.00 1.75
1385 1747 3.021269 TGGTGCCATACGATCGATTAC 57.979 47.619 24.34 10.97 0.00 1.89
1386 1748 2.362717 TGGTGCCATACGATCGATTACA 59.637 45.455 24.34 10.12 0.00 2.41
1387 1749 2.729882 GGTGCCATACGATCGATTACAC 59.270 50.000 24.34 20.21 0.00 2.90
1388 1750 2.404029 GTGCCATACGATCGATTACACG 59.596 50.000 24.34 0.32 0.00 4.49
1389 1751 2.033675 TGCCATACGATCGATTACACGT 59.966 45.455 24.34 13.44 41.66 4.49
1390 1752 3.250521 TGCCATACGATCGATTACACGTA 59.749 43.478 24.34 16.37 43.37 3.57
1391 1753 3.601211 GCCATACGATCGATTACACGTAC 59.399 47.826 24.34 4.24 42.36 3.67
1404 1766 7.216130 TCGATTACACGTACGTATTTGTTACTG 59.784 37.037 22.34 7.12 34.70 2.74
1407 1769 3.061161 CACGTACGTATTTGTTACTGGCC 59.939 47.826 22.34 0.00 0.00 5.36
1412 1774 3.078837 CGTATTTGTTACTGGCCCTTGT 58.921 45.455 0.00 0.00 0.00 3.16
1418 1780 2.645297 TGTTACTGGCCCTTGTATCCAA 59.355 45.455 0.00 0.00 0.00 3.53
1422 1784 0.331278 TGGCCCTTGTATCCAAGTGG 59.669 55.000 0.00 0.05 45.49 4.00
1465 1828 7.793927 ACTACATCCAAGCTATAGAAAAAGC 57.206 36.000 3.21 0.00 39.08 3.51
1509 1875 9.056005 GGATTAATGACATATAGTTTGAGTGCA 57.944 33.333 0.00 0.00 0.00 4.57
1515 1881 7.334858 TGACATATAGTTTGAGTGCATAACCA 58.665 34.615 0.00 0.00 0.00 3.67
1517 1883 8.752005 ACATATAGTTTGAGTGCATAACCATT 57.248 30.769 0.00 0.00 0.00 3.16
1519 1885 9.454585 CATATAGTTTGAGTGCATAACCATTTG 57.545 33.333 0.00 0.00 0.00 2.32
1520 1886 4.559153 AGTTTGAGTGCATAACCATTTGC 58.441 39.130 0.00 0.00 39.33 3.68
1521 1887 2.917701 TGAGTGCATAACCATTTGCG 57.082 45.000 0.00 0.00 41.80 4.85
1522 1888 1.472082 TGAGTGCATAACCATTTGCGG 59.528 47.619 0.00 0.00 41.80 5.69
1523 1889 0.173255 AGTGCATAACCATTTGCGGC 59.827 50.000 0.00 0.00 41.80 6.53
1524 1890 0.173255 GTGCATAACCATTTGCGGCT 59.827 50.000 0.00 0.00 41.80 5.52
1525 1891 1.403679 GTGCATAACCATTTGCGGCTA 59.596 47.619 0.00 0.00 41.80 3.93
1526 1892 1.675483 TGCATAACCATTTGCGGCTAG 59.325 47.619 0.00 0.00 41.80 3.42
1554 1920 8.674263 AATAAGCAAGATCTAGAAGTGGATTG 57.326 34.615 0.00 0.00 0.00 2.67
1565 1931 2.957402 AGTGGATTGCTTGGTCTTGA 57.043 45.000 0.00 0.00 0.00 3.02
1579 1945 3.628942 TGGTCTTGATGCACATCTATTGC 59.371 43.478 11.66 0.00 38.60 3.56
1586 1952 5.623169 TGATGCACATCTATTGCTCCATTA 58.377 37.500 11.66 0.00 40.86 1.90
1588 1954 6.373495 TGATGCACATCTATTGCTCCATTATC 59.627 38.462 11.66 0.00 40.86 1.75
1589 1955 5.872963 TGCACATCTATTGCTCCATTATCT 58.127 37.500 0.00 0.00 40.86 1.98
1591 1957 5.353678 GCACATCTATTGCTCCATTATCTCC 59.646 44.000 0.00 0.00 37.00 3.71
1592 1958 6.470278 CACATCTATTGCTCCATTATCTCCA 58.530 40.000 0.00 0.00 0.00 3.86
1599 1969 3.578282 TGCTCCATTATCTCCATCGCTAA 59.422 43.478 0.00 0.00 0.00 3.09
1639 2012 6.806388 TGATATTAACATGCTATGCCAGTG 57.194 37.500 0.00 0.00 0.00 3.66
1644 2017 3.581024 ACATGCTATGCCAGTGTTTTG 57.419 42.857 0.00 0.00 0.00 2.44
1646 2019 4.078537 ACATGCTATGCCAGTGTTTTGTA 58.921 39.130 0.00 0.00 0.00 2.41
1647 2020 4.706476 ACATGCTATGCCAGTGTTTTGTAT 59.294 37.500 0.00 0.00 0.00 2.29
1660 2033 8.711457 CCAGTGTTTTGTATTCATTGGAATTTC 58.289 33.333 0.00 0.00 40.87 2.17
1665 2038 7.461182 TTTGTATTCATTGGAATTTCGGACT 57.539 32.000 0.00 0.00 40.87 3.85
1670 2043 5.880054 TCATTGGAATTTCGGACTTTCTC 57.120 39.130 0.00 0.00 0.00 2.87
1672 2045 5.412594 TCATTGGAATTTCGGACTTTCTCTG 59.587 40.000 0.00 0.00 0.00 3.35
1674 2047 4.968259 TGGAATTTCGGACTTTCTCTGAA 58.032 39.130 0.00 0.00 41.78 3.02
1685 2058 3.808174 ACTTTCTCTGAAAACTGCGTACC 59.192 43.478 0.00 0.00 0.00 3.34
1690 2063 3.715495 TCTGAAAACTGCGTACCGTTAA 58.285 40.909 0.00 0.00 0.00 2.01
1696 2070 5.768333 AAACTGCGTACCGTTAAAGATAC 57.232 39.130 0.00 0.00 0.00 2.24
1700 2074 5.870978 ACTGCGTACCGTTAAAGATACAATT 59.129 36.000 0.00 0.00 0.00 2.32
1702 2076 7.009540 ACTGCGTACCGTTAAAGATACAATTAC 59.990 37.037 0.00 0.00 0.00 1.89
1718 2094 9.691362 GATACAATTACACTTTGTGACCATTTT 57.309 29.630 4.61 0.00 37.81 1.82
1719 2095 7.769272 ACAATTACACTTTGTGACCATTTTG 57.231 32.000 4.61 3.06 36.02 2.44
1727 2103 8.037758 ACACTTTGTGACCATTTTGTTGATTTA 58.962 29.630 4.61 0.00 36.96 1.40
1729 2105 9.097257 ACTTTGTGACCATTTTGTTGATTTAAG 57.903 29.630 0.00 0.00 0.00 1.85
1731 2107 5.988561 TGTGACCATTTTGTTGATTTAAGGC 59.011 36.000 0.00 0.00 0.00 4.35
1732 2108 5.988561 GTGACCATTTTGTTGATTTAAGGCA 59.011 36.000 0.00 0.00 0.00 4.75
1733 2109 6.650390 GTGACCATTTTGTTGATTTAAGGCAT 59.350 34.615 0.00 0.00 0.00 4.40
1736 2112 6.650390 ACCATTTTGTTGATTTAAGGCATCAC 59.350 34.615 0.00 0.00 30.09 3.06
1738 2114 4.433186 TTGTTGATTTAAGGCATCACGG 57.567 40.909 0.00 0.00 30.09 4.94
1739 2115 3.680490 TGTTGATTTAAGGCATCACGGA 58.320 40.909 0.00 0.00 30.09 4.69
1740 2116 3.689161 TGTTGATTTAAGGCATCACGGAG 59.311 43.478 0.00 0.00 30.09 4.63
1745 2121 2.961526 TAAGGCATCACGGAGAGAAC 57.038 50.000 0.00 0.00 0.00 3.01
1746 2122 0.250513 AAGGCATCACGGAGAGAACC 59.749 55.000 0.00 0.00 0.00 3.62
1758 2134 3.553511 CGGAGAGAACCATCGATCTTTTG 59.446 47.826 0.00 0.00 0.00 2.44
1760 2136 5.178797 GGAGAGAACCATCGATCTTTTGAA 58.821 41.667 0.00 0.00 0.00 2.69
1762 2138 4.627467 AGAGAACCATCGATCTTTTGAACG 59.373 41.667 0.00 0.00 44.48 3.95
1798 2174 4.579753 TCAGTGTCATCACATTTTGCTCAA 59.420 37.500 1.36 0.00 46.01 3.02
1803 2179 5.749588 TGTCATCACATTTTGCTCAAAGTTG 59.250 36.000 0.00 1.69 0.00 3.16
1807 2183 5.581605 TCACATTTTGCTCAAAGTTGTCTC 58.418 37.500 8.89 0.00 30.91 3.36
1810 2186 6.532657 CACATTTTGCTCAAAGTTGTCTCTTT 59.467 34.615 8.89 0.00 38.04 2.52
1831 2208 0.319728 TGTCTTCTGCTGCTGTCTCC 59.680 55.000 0.00 0.00 0.00 3.71
1833 2210 2.047844 TTCTGCTGCTGTCTCCGC 60.048 61.111 0.00 0.00 0.00 5.54
1967 2344 9.539825 ACATTGTAAATAATGCACAGTTTGAAA 57.460 25.926 0.00 0.00 40.80 2.69
1982 2359 7.915397 CACAGTTTGAAAGCTGTTATAACAAGT 59.085 33.333 18.55 6.65 46.33 3.16
2014 2391 9.632638 ACTGTTCATATTAATTTATCAGCTGGT 57.367 29.630 15.13 9.93 0.00 4.00
2015 2392 9.888878 CTGTTCATATTAATTTATCAGCTGGTG 57.111 33.333 15.13 0.00 0.00 4.17
2474 2860 8.691661 TTTTTCTCAAGAACTAGCCTTAACAT 57.308 30.769 0.00 0.00 33.13 2.71
2619 3007 3.655777 TCAGGAAGGGTTCACAGGTAATT 59.344 43.478 0.00 0.00 0.00 1.40
2625 3013 5.836024 AGGGTTCACAGGTAATTTACTGA 57.164 39.130 13.92 0.55 38.09 3.41
2840 3231 2.881266 GACACACACACACGCGCAT 61.881 57.895 5.73 0.00 0.00 4.73
4147 4566 3.912907 CGACGCGGGGGCTATCTT 61.913 66.667 12.47 0.00 0.00 2.40
4148 4567 2.029221 GACGCGGGGGCTATCTTC 59.971 66.667 12.47 0.00 0.00 2.87
4149 4568 3.516866 GACGCGGGGGCTATCTTCC 62.517 68.421 12.47 0.00 0.00 3.46
4150 4569 3.546543 CGCGGGGGCTATCTTCCA 61.547 66.667 0.00 0.00 0.00 3.53
4151 4570 2.915869 GCGGGGGCTATCTTCCAA 59.084 61.111 0.00 0.00 0.00 3.53
4152 4571 1.456287 GCGGGGGCTATCTTCCAAT 59.544 57.895 0.00 0.00 0.00 3.16
4153 4572 0.690762 GCGGGGGCTATCTTCCAATA 59.309 55.000 0.00 0.00 0.00 1.90
4154 4573 1.282157 GCGGGGGCTATCTTCCAATAT 59.718 52.381 0.00 0.00 0.00 1.28
4155 4574 2.504175 GCGGGGGCTATCTTCCAATATA 59.496 50.000 0.00 0.00 0.00 0.86
4156 4575 3.136626 GCGGGGGCTATCTTCCAATATAT 59.863 47.826 0.00 0.00 0.00 0.86
4157 4576 4.385310 GCGGGGGCTATCTTCCAATATATT 60.385 45.833 0.00 0.00 0.00 1.28
4158 4577 5.163237 GCGGGGGCTATCTTCCAATATATTA 60.163 44.000 0.00 0.00 0.00 0.98
4159 4578 6.289064 CGGGGGCTATCTTCCAATATATTAC 58.711 44.000 0.00 0.00 0.00 1.89
4160 4579 6.099845 CGGGGGCTATCTTCCAATATATTACT 59.900 42.308 0.00 0.00 0.00 2.24
4161 4580 7.289317 CGGGGGCTATCTTCCAATATATTACTA 59.711 40.741 0.00 0.00 0.00 1.82
4162 4581 8.999895 GGGGGCTATCTTCCAATATATTACTAA 58.000 37.037 0.00 0.00 0.00 2.24
4625 5044 6.490492 CCCTTTTACTCTTTCCTTTCCCATA 58.510 40.000 0.00 0.00 0.00 2.74
4754 5173 3.058708 GGATCATGTGGCACAATATCACG 60.059 47.826 30.43 14.87 44.16 4.35
4758 5177 1.277842 TGTGGCACAATATCACGTCCT 59.722 47.619 19.74 0.00 44.16 3.85
4875 5295 4.214332 GGAAACCTGTTCTGTCTCATTCAC 59.786 45.833 0.00 0.00 0.00 3.18
4930 5350 9.832445 AGTAAAATGTCCGTGATCTTTGTATAT 57.168 29.630 0.00 0.00 0.00 0.86
4969 5389 9.868389 CTTTACACTGTATATGTGCATGTATTG 57.132 33.333 0.00 0.00 38.86 1.90
5167 5589 9.745880 AACACTATTCAATGTAAGTATACGAGG 57.254 33.333 0.00 0.00 34.60 4.63
5212 5634 8.621532 TTATCTCCATCAGTAATAACCATTGC 57.378 34.615 0.00 0.00 0.00 3.56
5220 5642 5.121611 TCAGTAATAACCATTGCGTCACTTG 59.878 40.000 0.00 0.00 32.51 3.16
5352 5774 2.456119 CGGGCGCAAGATGTCACTC 61.456 63.158 10.83 0.00 43.02 3.51
5363 5785 0.835941 ATGTCACTCATGGGCTCCTC 59.164 55.000 0.00 0.00 35.19 3.71
5496 5919 1.931906 TGATCTCGCTGCAGTCAATC 58.068 50.000 16.64 13.29 0.00 2.67
5508 5931 3.050703 GTCAATCGACGTGAGCCAT 57.949 52.632 0.00 0.00 31.07 4.40
5543 5966 2.603075 AGCAAGGTCTCTGTCTCTCT 57.397 50.000 0.00 0.00 0.00 3.10
5572 6060 5.662657 TCTCTCTCTCTCTCTCTCTCAATGA 59.337 44.000 0.00 0.00 0.00 2.57
5631 6119 9.658799 TGATGAAGAAAAGGAACTAATACAGAG 57.341 33.333 0.00 0.00 38.49 3.35
5654 6142 8.571336 AGAGATACTTGATTTGTTTCCTTGTTG 58.429 33.333 0.00 0.00 0.00 3.33
5753 6241 2.568623 ACCCTGAGTCCATGAACAAC 57.431 50.000 0.00 0.00 0.00 3.32
5832 6320 6.986817 CACATACTACAGGAATTTACAGGAGG 59.013 42.308 0.00 0.00 0.00 4.30
5906 6394 7.252612 TGACAAGTTGGTGGATATAGAAGAA 57.747 36.000 7.96 0.00 0.00 2.52
6046 6539 9.614792 ACTAGTTTCTTTACAGATTTTGTCACT 57.385 29.630 0.00 0.00 41.29 3.41
6052 6545 8.675705 TCTTTACAGATTTTGTCACTGATTCA 57.324 30.769 0.00 0.00 41.29 2.57
6150 6643 1.080501 CTGCTCAAAGCTCCGTCGA 60.081 57.895 0.00 0.00 42.97 4.20
6184 6677 3.446873 TGTTCAAGTGGCTGTCATGTTTT 59.553 39.130 0.00 0.00 0.00 2.43
6203 6696 7.114882 TGTTTTTGCATTTCATATTTCCACG 57.885 32.000 0.00 0.00 0.00 4.94
6226 6719 7.271223 CACGGTACTTGCTTGATTTTGAAATAG 59.729 37.037 0.00 0.00 0.00 1.73
6233 6726 6.158598 TGCTTGATTTTGAAATAGAAGGTGC 58.841 36.000 8.58 0.00 0.00 5.01
6310 6809 5.703978 TCATGGTGTACTTTTGTTCATGG 57.296 39.130 0.00 0.00 32.52 3.66
6546 7056 6.404074 GCACCTCAGGAATATTTGAACTTGAG 60.404 42.308 0.00 6.90 36.63 3.02
6560 7070 8.842358 TTTGAACTTGAGAAATATTACCTCGT 57.158 30.769 11.08 4.14 0.00 4.18
6562 7072 8.475331 TGAACTTGAGAAATATTACCTCGTTC 57.525 34.615 18.65 18.65 32.72 3.95
6580 7097 5.981174 TCGTTCGGAAATAACTTTGAACTG 58.019 37.500 0.00 0.00 33.67 3.16
6590 7107 7.556733 AATAACTTTGAACTGAAACCACGTA 57.443 32.000 0.00 0.00 0.00 3.57
6683 7226 8.607441 AAGAAAAAGAAATACAAAATGGGAGC 57.393 30.769 0.00 0.00 0.00 4.70
6724 7267 2.954753 GCCTCGCCACACAAACTCG 61.955 63.158 0.00 0.00 0.00 4.18
6730 7273 0.868406 GCCACACAAACTCGAGAAGG 59.132 55.000 21.68 9.83 0.00 3.46
6743 7286 0.735471 GAGAAGGAAATGGCGGCTTC 59.265 55.000 11.43 6.47 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.763902 CAACAACCCCTCCCTCCC 59.236 66.667 0.00 0.00 0.00 4.30
2 3 2.035783 GCAACAACCCCTCCCTCC 59.964 66.667 0.00 0.00 0.00 4.30
3 4 0.251787 AATGCAACAACCCCTCCCTC 60.252 55.000 0.00 0.00 0.00 4.30
5 6 1.548719 GTAAATGCAACAACCCCTCCC 59.451 52.381 0.00 0.00 0.00 4.30
6 7 2.029380 GTGTAAATGCAACAACCCCTCC 60.029 50.000 0.00 0.00 0.00 4.30
7 8 2.625790 TGTGTAAATGCAACAACCCCTC 59.374 45.455 0.00 0.00 0.00 4.30
8 9 2.672098 TGTGTAAATGCAACAACCCCT 58.328 42.857 0.00 0.00 0.00 4.79
9 10 3.676291 ATGTGTAAATGCAACAACCCC 57.324 42.857 0.00 0.00 0.00 4.95
11 12 7.141100 ACTACTATGTGTAAATGCAACAACC 57.859 36.000 0.00 0.00 0.00 3.77
13 14 9.366216 CTCTACTACTATGTGTAAATGCAACAA 57.634 33.333 0.00 0.00 0.00 2.83
15 16 9.751542 ATCTCTACTACTATGTGTAAATGCAAC 57.248 33.333 0.00 0.00 0.00 4.17
16 17 9.750125 CATCTCTACTACTATGTGTAAATGCAA 57.250 33.333 0.00 0.00 0.00 4.08
17 18 9.131791 TCATCTCTACTACTATGTGTAAATGCA 57.868 33.333 0.00 0.00 0.00 3.96
18 19 9.619316 CTCATCTCTACTACTATGTGTAAATGC 57.381 37.037 0.00 0.00 0.00 3.56
19 20 9.619316 GCTCATCTCTACTACTATGTGTAAATG 57.381 37.037 0.00 0.00 0.00 2.32
20 21 9.355916 TGCTCATCTCTACTACTATGTGTAAAT 57.644 33.333 0.00 0.00 0.00 1.40
21 22 8.747538 TGCTCATCTCTACTACTATGTGTAAA 57.252 34.615 0.00 0.00 0.00 2.01
22 23 8.747538 TTGCTCATCTCTACTACTATGTGTAA 57.252 34.615 0.00 0.00 0.00 2.41
23 24 8.747538 TTTGCTCATCTCTACTACTATGTGTA 57.252 34.615 0.00 0.00 0.00 2.90
24 25 7.646548 TTTGCTCATCTCTACTACTATGTGT 57.353 36.000 0.00 0.00 0.00 3.72
25 26 8.932945 TTTTTGCTCATCTCTACTACTATGTG 57.067 34.615 0.00 0.00 0.00 3.21
71 72 9.807649 GTACCGATTACAAAAGAATTACTAGGA 57.192 33.333 0.00 0.00 0.00 2.94
72 73 9.590451 TGTACCGATTACAAAAGAATTACTAGG 57.410 33.333 0.00 0.00 37.78 3.02
88 89 6.399743 TGCTTTCAGTTACATGTACCGATTA 58.600 36.000 4.68 0.00 0.00 1.75
94 95 5.088739 GTGCATGCTTTCAGTTACATGTAC 58.911 41.667 20.33 7.18 44.69 2.90
101 102 5.710513 AGAATTGTGCATGCTTTCAGTTA 57.289 34.783 20.33 1.86 0.00 2.24
105 106 5.450592 TTGTAGAATTGTGCATGCTTTCA 57.549 34.783 20.33 12.45 0.00 2.69
106 107 8.464770 TTTATTGTAGAATTGTGCATGCTTTC 57.535 30.769 20.33 15.40 0.00 2.62
108 109 9.520204 GTATTTATTGTAGAATTGTGCATGCTT 57.480 29.630 20.33 4.16 0.00 3.91
109 110 8.685427 TGTATTTATTGTAGAATTGTGCATGCT 58.315 29.630 20.33 0.00 0.00 3.79
110 111 8.854979 TGTATTTATTGTAGAATTGTGCATGC 57.145 30.769 11.82 11.82 0.00 4.06
123 124 9.062524 CCTCGGAATCCAAATGTATTTATTGTA 57.937 33.333 0.00 0.00 0.00 2.41
136 137 0.843984 GGGGATCCTCGGAATCCAAA 59.156 55.000 12.58 0.00 36.22 3.28
146 147 4.042435 TCCATTTTATAACCGGGGATCCTC 59.958 45.833 12.58 6.64 0.00 3.71
155 157 5.695816 CCCATGCATTTCCATTTTATAACCG 59.304 40.000 0.00 0.00 0.00 4.44
216 219 1.823899 GGAAGCCGCCGGATTGATT 60.824 57.895 13.14 0.00 28.48 2.57
217 220 2.203209 GGAAGCCGCCGGATTGAT 60.203 61.111 13.14 0.00 28.48 2.57
254 257 2.053865 ATTGGATGCTTGGCACGGG 61.054 57.895 0.00 0.00 43.04 5.28
258 261 2.360767 GCCCATTGGATGCTTGGCA 61.361 57.895 3.62 0.00 44.86 4.92
259 262 2.306255 CTGCCCATTGGATGCTTGGC 62.306 60.000 3.62 0.00 36.18 4.52
262 265 1.033746 CGACTGCCCATTGGATGCTT 61.034 55.000 3.62 0.00 0.00 3.91
263 266 1.452651 CGACTGCCCATTGGATGCT 60.453 57.895 3.62 0.00 0.00 3.79
264 267 3.113745 CGACTGCCCATTGGATGC 58.886 61.111 3.62 0.11 0.00 3.91
303 345 3.895102 TTGGTAACCGACGCGTCCG 62.895 63.158 31.84 27.24 41.14 4.79
343 385 5.778750 AGGAGCAGTAGTAGGAGTAAAACAA 59.221 40.000 0.00 0.00 0.00 2.83
344 386 5.185249 CAGGAGCAGTAGTAGGAGTAAAACA 59.815 44.000 0.00 0.00 0.00 2.83
349 391 2.510382 AGCAGGAGCAGTAGTAGGAGTA 59.490 50.000 0.00 0.00 45.49 2.59
350 392 1.286553 AGCAGGAGCAGTAGTAGGAGT 59.713 52.381 0.00 0.00 45.49 3.85
351 393 2.065899 AGCAGGAGCAGTAGTAGGAG 57.934 55.000 0.00 0.00 45.49 3.69
352 394 2.510382 AGTAGCAGGAGCAGTAGTAGGA 59.490 50.000 0.00 0.00 45.49 2.94
353 395 2.938838 AGTAGCAGGAGCAGTAGTAGG 58.061 52.381 0.00 0.00 45.49 3.18
354 396 4.710324 AGTAGTAGCAGGAGCAGTAGTAG 58.290 47.826 0.00 0.00 45.49 2.57
355 397 4.774660 AGTAGTAGCAGGAGCAGTAGTA 57.225 45.455 0.00 0.00 45.49 1.82
356 398 3.655615 AGTAGTAGCAGGAGCAGTAGT 57.344 47.619 0.00 0.00 45.49 2.73
357 399 4.710324 ACTAGTAGTAGCAGGAGCAGTAG 58.290 47.826 0.00 0.00 45.49 2.57
358 400 4.409574 AGACTAGTAGTAGCAGGAGCAGTA 59.590 45.833 1.88 0.00 45.49 2.74
359 401 3.201266 AGACTAGTAGTAGCAGGAGCAGT 59.799 47.826 1.88 0.00 45.49 4.40
360 402 3.815809 AGACTAGTAGTAGCAGGAGCAG 58.184 50.000 1.88 0.00 45.49 4.24
361 403 3.935818 AGACTAGTAGTAGCAGGAGCA 57.064 47.619 1.88 0.00 45.49 4.26
362 404 4.641094 TCAAAGACTAGTAGTAGCAGGAGC 59.359 45.833 1.88 0.00 42.56 4.70
363 405 6.952773 ATCAAAGACTAGTAGTAGCAGGAG 57.047 41.667 1.88 0.00 0.00 3.69
364 406 6.890268 TCAATCAAAGACTAGTAGTAGCAGGA 59.110 38.462 1.88 0.00 0.00 3.86
365 407 7.067615 TCTCAATCAAAGACTAGTAGTAGCAGG 59.932 40.741 1.88 0.00 0.00 4.85
366 408 7.913297 GTCTCAATCAAAGACTAGTAGTAGCAG 59.087 40.741 1.88 0.00 40.03 4.24
367 409 7.414208 CGTCTCAATCAAAGACTAGTAGTAGCA 60.414 40.741 1.88 0.00 40.82 3.49
368 410 6.908284 CGTCTCAATCAAAGACTAGTAGTAGC 59.092 42.308 1.88 0.00 40.82 3.58
369 411 8.199176 TCGTCTCAATCAAAGACTAGTAGTAG 57.801 38.462 1.88 2.87 40.82 2.57
370 412 8.039538 TCTCGTCTCAATCAAAGACTAGTAGTA 58.960 37.037 1.88 0.00 40.82 1.82
371 413 6.879993 TCTCGTCTCAATCAAAGACTAGTAGT 59.120 38.462 1.37 1.37 40.82 2.73
372 414 7.310072 TCTCGTCTCAATCAAAGACTAGTAG 57.690 40.000 0.00 0.00 40.82 2.57
386 428 3.820467 ACATGCCATTTTTCTCGTCTCAA 59.180 39.130 0.00 0.00 0.00 3.02
387 429 3.411446 ACATGCCATTTTTCTCGTCTCA 58.589 40.909 0.00 0.00 0.00 3.27
388 430 4.406943 GAACATGCCATTTTTCTCGTCTC 58.593 43.478 0.00 0.00 0.00 3.36
389 431 3.191371 GGAACATGCCATTTTTCTCGTCT 59.809 43.478 0.00 0.00 0.00 4.18
390 432 3.057596 TGGAACATGCCATTTTTCTCGTC 60.058 43.478 0.00 0.00 31.66 4.20
391 433 2.890311 TGGAACATGCCATTTTTCTCGT 59.110 40.909 0.00 0.00 31.66 4.18
392 434 3.504863 CTGGAACATGCCATTTTTCTCG 58.495 45.455 0.00 0.00 38.20 4.04
393 435 3.256558 GCTGGAACATGCCATTTTTCTC 58.743 45.455 0.00 0.00 38.20 2.87
394 436 2.027837 GGCTGGAACATGCCATTTTTCT 60.028 45.455 0.00 0.00 46.65 2.52
395 437 2.349590 GGCTGGAACATGCCATTTTTC 58.650 47.619 0.00 0.00 46.65 2.29
396 438 2.477845 GGCTGGAACATGCCATTTTT 57.522 45.000 0.00 0.00 46.65 1.94
420 462 1.605712 GGAGTTATGGAAGCCGATCGG 60.606 57.143 30.03 30.03 38.57 4.18
439 481 1.152963 GAACATGGGATGGGACGGG 60.153 63.158 0.00 0.00 33.60 5.28
440 482 1.152963 GGAACATGGGATGGGACGG 60.153 63.158 0.00 0.00 33.60 4.79
441 483 1.607071 TGGAACATGGGATGGGACG 59.393 57.895 0.00 0.00 33.60 4.79
483 537 2.417978 GGGGGTTTTCGTTCCGTTT 58.582 52.632 0.00 0.00 0.00 3.60
484 538 4.162592 GGGGGTTTTCGTTCCGTT 57.837 55.556 0.00 0.00 0.00 4.44
565 621 4.467082 TGGAATTGTTGGATGGATGGAAAG 59.533 41.667 0.00 0.00 0.00 2.62
569 625 4.202284 GGATTGGAATTGTTGGATGGATGG 60.202 45.833 0.00 0.00 0.00 3.51
571 627 3.638160 CGGATTGGAATTGTTGGATGGAT 59.362 43.478 0.00 0.00 0.00 3.41
572 628 3.023119 CGGATTGGAATTGTTGGATGGA 58.977 45.455 0.00 0.00 0.00 3.41
573 629 2.481795 GCGGATTGGAATTGTTGGATGG 60.482 50.000 0.00 0.00 0.00 3.51
574 630 2.795681 CGCGGATTGGAATTGTTGGATG 60.796 50.000 0.00 0.00 0.00 3.51
575 631 1.405105 CGCGGATTGGAATTGTTGGAT 59.595 47.619 0.00 0.00 0.00 3.41
577 633 0.801836 GCGCGGATTGGAATTGTTGG 60.802 55.000 8.83 0.00 0.00 3.77
578 634 0.171007 AGCGCGGATTGGAATTGTTG 59.829 50.000 8.83 0.00 0.00 3.33
580 636 0.960364 ACAGCGCGGATTGGAATTGT 60.960 50.000 16.26 0.00 0.00 2.71
581 637 0.523968 CACAGCGCGGATTGGAATTG 60.524 55.000 16.26 0.00 0.00 2.32
583 639 0.464373 ATCACAGCGCGGATTGGAAT 60.464 50.000 16.26 0.00 0.00 3.01
584 640 0.676466 AATCACAGCGCGGATTGGAA 60.676 50.000 16.26 0.00 32.75 3.53
585 641 1.078497 AATCACAGCGCGGATTGGA 60.078 52.632 16.26 6.49 32.75 3.53
701 759 4.543084 GCTGCAGCGGATTTCGGC 62.543 66.667 25.23 0.00 41.75 5.54
760 821 1.065273 CAATCAATCAGCCCGCAGC 59.935 57.895 0.00 0.00 44.25 5.25
761 822 1.065273 GCAATCAATCAGCCCGCAG 59.935 57.895 0.00 0.00 0.00 5.18
762 823 2.417257 GGCAATCAATCAGCCCGCA 61.417 57.895 0.00 0.00 42.58 5.69
763 824 2.414594 GGCAATCAATCAGCCCGC 59.585 61.111 0.00 0.00 42.58 6.13
767 828 1.202382 GCAGGAAGGCAATCAATCAGC 60.202 52.381 0.00 0.00 0.00 4.26
768 829 1.407979 GGCAGGAAGGCAATCAATCAG 59.592 52.381 0.00 0.00 43.51 2.90
769 830 1.477553 GGCAGGAAGGCAATCAATCA 58.522 50.000 0.00 0.00 43.51 2.57
770 831 0.383231 CGGCAGGAAGGCAATCAATC 59.617 55.000 0.00 0.00 44.47 2.67
771 832 1.039233 CCGGCAGGAAGGCAATCAAT 61.039 55.000 0.00 0.00 44.47 2.57
772 833 1.678635 CCGGCAGGAAGGCAATCAA 60.679 57.895 0.00 0.00 44.47 2.57
773 834 1.558167 TACCGGCAGGAAGGCAATCA 61.558 55.000 10.86 0.00 44.47 2.57
774 835 0.393808 TTACCGGCAGGAAGGCAATC 60.394 55.000 10.86 0.00 44.47 2.67
775 836 0.394352 CTTACCGGCAGGAAGGCAAT 60.394 55.000 10.86 0.00 44.47 3.56
776 837 1.002624 CTTACCGGCAGGAAGGCAA 60.003 57.895 10.86 0.00 44.47 4.52
777 838 2.668632 CTTACCGGCAGGAAGGCA 59.331 61.111 10.86 0.00 44.47 4.75
778 839 2.124695 CCTTACCGGCAGGAAGGC 60.125 66.667 14.20 0.00 41.02 4.35
779 840 1.988015 TTCCTTACCGGCAGGAAGG 59.012 57.895 25.44 20.45 44.17 3.46
781 842 1.681076 GGTTCCTTACCGGCAGGAA 59.319 57.895 25.44 25.44 46.39 3.36
782 843 3.395630 GGTTCCTTACCGGCAGGA 58.604 61.111 17.43 17.43 41.02 3.86
806 867 1.513622 GGGAGACGAAGAGCTGACC 59.486 63.158 0.00 0.00 0.00 4.02
808 869 1.682684 GGGGGAGACGAAGAGCTGA 60.683 63.158 0.00 0.00 0.00 4.26
813 874 0.036306 GCAAAAGGGGGAGACGAAGA 59.964 55.000 0.00 0.00 0.00 2.87
814 875 0.036875 AGCAAAAGGGGGAGACGAAG 59.963 55.000 0.00 0.00 0.00 3.79
815 876 0.036306 GAGCAAAAGGGGGAGACGAA 59.964 55.000 0.00 0.00 0.00 3.85
848 911 1.208293 AGAGGGCTTCGGTTCTTGATC 59.792 52.381 0.00 0.00 0.00 2.92
860 923 2.370633 GGAGAGGGGAGAGGGCTT 59.629 66.667 0.00 0.00 0.00 4.35
917 991 2.481969 CGATCTTGATTGGCGGAGAAGA 60.482 50.000 0.00 0.00 0.00 2.87
1176 1538 4.477975 GCCCTCTCGTCGTCGGTG 62.478 72.222 1.55 0.00 37.69 4.94
1203 1565 2.434884 AGCATGTGGCCGAAGACG 60.435 61.111 0.00 0.00 46.50 4.18
1330 1692 4.946784 AAGAACAATACTTCGTGCATCC 57.053 40.909 0.00 0.00 0.00 3.51
1331 1693 5.569059 CCAAAAGAACAATACTTCGTGCATC 59.431 40.000 0.00 0.00 0.00 3.91
1332 1694 5.009610 ACCAAAAGAACAATACTTCGTGCAT 59.990 36.000 0.00 0.00 0.00 3.96
1333 1695 4.336993 ACCAAAAGAACAATACTTCGTGCA 59.663 37.500 0.00 0.00 0.00 4.57
1334 1696 4.855531 ACCAAAAGAACAATACTTCGTGC 58.144 39.130 0.00 0.00 0.00 5.34
1335 1697 6.055231 TGACCAAAAGAACAATACTTCGTG 57.945 37.500 0.00 0.00 0.00 4.35
1336 1698 5.238650 CCTGACCAAAAGAACAATACTTCGT 59.761 40.000 0.00 0.00 0.00 3.85
1337 1699 5.468746 TCCTGACCAAAAGAACAATACTTCG 59.531 40.000 0.00 0.00 0.00 3.79
1338 1700 6.877611 TCCTGACCAAAAGAACAATACTTC 57.122 37.500 0.00 0.00 0.00 3.01
1339 1701 7.839680 AATCCTGACCAAAAGAACAATACTT 57.160 32.000 0.00 0.00 0.00 2.24
1341 1703 7.384932 CCAAAATCCTGACCAAAAGAACAATAC 59.615 37.037 0.00 0.00 0.00 1.89
1344 1706 5.188751 ACCAAAATCCTGACCAAAAGAACAA 59.811 36.000 0.00 0.00 0.00 2.83
1345 1707 4.714308 ACCAAAATCCTGACCAAAAGAACA 59.286 37.500 0.00 0.00 0.00 3.18
1346 1708 5.049828 CACCAAAATCCTGACCAAAAGAAC 58.950 41.667 0.00 0.00 0.00 3.01
1347 1709 4.442753 GCACCAAAATCCTGACCAAAAGAA 60.443 41.667 0.00 0.00 0.00 2.52
1348 1710 3.069443 GCACCAAAATCCTGACCAAAAGA 59.931 43.478 0.00 0.00 0.00 2.52
1349 1711 3.392882 GCACCAAAATCCTGACCAAAAG 58.607 45.455 0.00 0.00 0.00 2.27
1350 1712 2.103941 GGCACCAAAATCCTGACCAAAA 59.896 45.455 0.00 0.00 0.00 2.44
1351 1713 1.691434 GGCACCAAAATCCTGACCAAA 59.309 47.619 0.00 0.00 0.00 3.28
1352 1714 1.337118 GGCACCAAAATCCTGACCAA 58.663 50.000 0.00 0.00 0.00 3.67
1353 1715 0.187117 TGGCACCAAAATCCTGACCA 59.813 50.000 0.00 0.00 0.00 4.02
1354 1716 1.560505 ATGGCACCAAAATCCTGACC 58.439 50.000 0.00 0.00 0.00 4.02
1355 1717 2.097466 CGTATGGCACCAAAATCCTGAC 59.903 50.000 0.00 0.00 0.00 3.51
1356 1718 2.026729 TCGTATGGCACCAAAATCCTGA 60.027 45.455 0.00 0.00 0.00 3.86
1357 1719 2.364632 TCGTATGGCACCAAAATCCTG 58.635 47.619 0.00 0.00 0.00 3.86
1358 1720 2.799126 TCGTATGGCACCAAAATCCT 57.201 45.000 0.00 0.00 0.00 3.24
1359 1721 2.032030 CGATCGTATGGCACCAAAATCC 60.032 50.000 7.03 0.00 0.00 3.01
1360 1722 2.869801 TCGATCGTATGGCACCAAAATC 59.130 45.455 15.94 0.00 0.00 2.17
1361 1723 2.912771 TCGATCGTATGGCACCAAAAT 58.087 42.857 15.94 0.00 0.00 1.82
1362 1724 2.388310 TCGATCGTATGGCACCAAAA 57.612 45.000 15.94 0.00 0.00 2.44
1363 1725 2.613026 ATCGATCGTATGGCACCAAA 57.387 45.000 15.94 0.00 0.00 3.28
1364 1726 2.613026 AATCGATCGTATGGCACCAA 57.387 45.000 15.94 0.00 0.00 3.67
1365 1727 2.362717 TGTAATCGATCGTATGGCACCA 59.637 45.455 15.94 0.00 0.00 4.17
1366 1728 2.729882 GTGTAATCGATCGTATGGCACC 59.270 50.000 15.94 0.00 0.00 5.01
1367 1729 2.404029 CGTGTAATCGATCGTATGGCAC 59.596 50.000 15.94 16.12 0.00 5.01
1368 1730 2.033675 ACGTGTAATCGATCGTATGGCA 59.966 45.455 15.94 6.53 34.78 4.92
1369 1731 2.658285 ACGTGTAATCGATCGTATGGC 58.342 47.619 15.94 3.99 34.78 4.40
1370 1732 3.836897 CGTACGTGTAATCGATCGTATGG 59.163 47.826 20.51 12.76 40.08 2.74
1371 1733 4.448891 ACGTACGTGTAATCGATCGTATG 58.551 43.478 22.14 23.96 45.28 2.39
1372 1734 4.715520 ACGTACGTGTAATCGATCGTAT 57.284 40.909 22.14 7.79 40.06 3.06
1373 1735 5.822584 ATACGTACGTGTAATCGATCGTA 57.177 39.130 30.25 11.67 42.80 3.43
1374 1736 4.715520 ATACGTACGTGTAATCGATCGT 57.284 40.909 30.25 13.44 41.82 3.73
1375 1737 5.393452 ACAAATACGTACGTGTAATCGATCG 59.607 40.000 30.25 9.36 36.92 3.69
1376 1738 6.722972 ACAAATACGTACGTGTAATCGATC 57.277 37.500 30.25 0.00 34.70 3.69
1377 1739 7.910162 AGTAACAAATACGTACGTGTAATCGAT 59.090 33.333 30.25 11.35 39.62 3.59
1378 1740 7.216130 CAGTAACAAATACGTACGTGTAATCGA 59.784 37.037 30.25 9.30 39.62 3.59
1379 1741 7.315009 CAGTAACAAATACGTACGTGTAATCG 58.685 38.462 30.25 15.35 39.62 3.34
1380 1742 7.603515 CCAGTAACAAATACGTACGTGTAATC 58.396 38.462 30.25 12.58 39.62 1.75
1381 1743 6.034898 GCCAGTAACAAATACGTACGTGTAAT 59.965 38.462 30.25 13.65 39.62 1.89
1382 1744 5.344665 GCCAGTAACAAATACGTACGTGTAA 59.655 40.000 30.25 11.71 39.62 2.41
1383 1745 4.856487 GCCAGTAACAAATACGTACGTGTA 59.144 41.667 30.25 12.52 39.62 2.90
1384 1746 3.674753 GCCAGTAACAAATACGTACGTGT 59.325 43.478 30.25 21.74 39.62 4.49
1385 1747 3.061161 GGCCAGTAACAAATACGTACGTG 59.939 47.826 30.25 16.05 39.62 4.49
1386 1748 3.253230 GGCCAGTAACAAATACGTACGT 58.747 45.455 25.98 25.98 39.62 3.57
1387 1749 2.604462 GGGCCAGTAACAAATACGTACG 59.396 50.000 15.01 15.01 39.62 3.67
1388 1750 3.865446 AGGGCCAGTAACAAATACGTAC 58.135 45.455 6.18 0.00 39.62 3.67
1389 1751 4.255301 CAAGGGCCAGTAACAAATACGTA 58.745 43.478 6.18 0.00 39.62 3.57
1390 1752 3.078837 CAAGGGCCAGTAACAAATACGT 58.921 45.455 6.18 0.00 39.62 3.57
1391 1753 3.078837 ACAAGGGCCAGTAACAAATACG 58.921 45.455 6.18 0.00 39.62 3.06
1418 1780 8.007405 AGTTTAATTAAAAGCTGTTGTCCACT 57.993 30.769 12.14 0.00 0.00 4.00
1424 1786 9.906660 TGGATGTAGTTTAATTAAAAGCTGTTG 57.093 29.630 12.14 0.00 0.00 3.33
1490 1856 7.334858 TGGTTATGCACTCAAACTATATGTCA 58.665 34.615 0.00 0.00 0.00 3.58
1505 1871 0.173255 AGCCGCAAATGGTTATGCAC 59.827 50.000 0.00 0.00 42.68 4.57
1506 1872 1.675483 CTAGCCGCAAATGGTTATGCA 59.325 47.619 0.00 0.00 42.68 3.96
1507 1873 1.600413 GCTAGCCGCAAATGGTTATGC 60.600 52.381 2.29 0.00 38.92 3.14
1509 1875 2.348411 AGCTAGCCGCAAATGGTTAT 57.652 45.000 12.13 0.00 42.61 1.89
1510 1876 2.992124 TAGCTAGCCGCAAATGGTTA 57.008 45.000 12.13 0.00 42.61 2.85
1511 1877 2.122783 TTAGCTAGCCGCAAATGGTT 57.877 45.000 12.13 0.00 42.61 3.67
1512 1878 2.348411 ATTAGCTAGCCGCAAATGGT 57.652 45.000 12.13 0.00 42.61 3.55
1513 1879 3.365364 GCTTATTAGCTAGCCGCAAATGG 60.365 47.826 12.13 5.84 44.27 3.16
1515 1881 6.203499 TCTTGCTTATTAGCTAGCCGCAAAT 61.203 40.000 12.13 9.02 45.90 2.32
1517 1883 3.431626 TCTTGCTTATTAGCTAGCCGCAA 60.432 43.478 12.13 14.72 45.90 4.85
1519 1885 2.755650 TCTTGCTTATTAGCTAGCCGC 58.244 47.619 12.13 5.51 45.90 6.53
1520 1886 4.815269 AGATCTTGCTTATTAGCTAGCCG 58.185 43.478 12.13 0.00 45.90 5.52
1521 1887 7.164230 TCTAGATCTTGCTTATTAGCTAGCC 57.836 40.000 12.13 5.20 45.90 3.93
1522 1888 8.303876 ACTTCTAGATCTTGCTTATTAGCTAGC 58.696 37.037 6.62 6.62 45.90 3.42
1527 1893 9.995003 AATCCACTTCTAGATCTTGCTTATTAG 57.005 33.333 0.00 0.00 0.00 1.73
1528 1894 9.770097 CAATCCACTTCTAGATCTTGCTTATTA 57.230 33.333 0.00 0.00 0.00 0.98
1541 1907 4.213564 AGACCAAGCAATCCACTTCTAG 57.786 45.455 0.00 0.00 0.00 2.43
1554 1920 2.089980 AGATGTGCATCAAGACCAAGC 58.910 47.619 13.79 0.00 40.22 4.01
1565 1931 6.482524 AGATAATGGAGCAATAGATGTGCAT 58.517 36.000 0.00 0.00 44.74 3.96
1579 1945 5.651387 TCTTAGCGATGGAGATAATGGAG 57.349 43.478 0.00 0.00 0.00 3.86
1613 1983 8.301720 CACTGGCATAGCATGTTAATATCAATT 58.698 33.333 0.00 0.00 0.00 2.32
1618 1988 7.587037 AAACACTGGCATAGCATGTTAATAT 57.413 32.000 0.00 0.00 32.39 1.28
1623 1993 3.321682 ACAAAACACTGGCATAGCATGTT 59.678 39.130 0.00 0.00 34.04 2.71
1624 1994 2.892852 ACAAAACACTGGCATAGCATGT 59.107 40.909 0.00 0.00 0.00 3.21
1634 2004 8.606040 AAATTCCAATGAATACAAAACACTGG 57.394 30.769 0.00 0.00 40.34 4.00
1637 2010 7.596995 TCCGAAATTCCAATGAATACAAAACAC 59.403 33.333 0.00 0.00 40.34 3.32
1639 2012 7.812669 AGTCCGAAATTCCAATGAATACAAAAC 59.187 33.333 0.00 0.00 40.34 2.43
1644 2017 7.762382 AGAAAGTCCGAAATTCCAATGAATAC 58.238 34.615 0.00 0.00 40.34 1.89
1646 2019 6.660949 AGAGAAAGTCCGAAATTCCAATGAAT 59.339 34.615 0.00 0.00 43.08 2.57
1647 2020 6.003950 AGAGAAAGTCCGAAATTCCAATGAA 58.996 36.000 0.00 0.00 34.33 2.57
1660 2033 2.096713 CGCAGTTTTCAGAGAAAGTCCG 60.097 50.000 0.00 0.00 0.00 4.79
1690 2063 8.635765 ATGGTCACAAAGTGTAATTGTATCTT 57.364 30.769 0.00 0.00 38.90 2.40
1696 2070 7.769272 ACAAAATGGTCACAAAGTGTAATTG 57.231 32.000 0.00 0.00 34.79 2.32
1700 2074 6.516739 TCAACAAAATGGTCACAAAGTGTA 57.483 33.333 0.00 0.00 34.79 2.90
1702 2076 6.907206 AATCAACAAAATGGTCACAAAGTG 57.093 33.333 0.00 0.00 34.45 3.16
1718 2094 3.680490 TCCGTGATGCCTTAAATCAACA 58.320 40.909 0.00 0.00 35.87 3.33
1719 2095 3.938963 TCTCCGTGATGCCTTAAATCAAC 59.061 43.478 0.00 0.00 35.87 3.18
1727 2103 0.250513 GGTTCTCTCCGTGATGCCTT 59.749 55.000 0.00 0.00 0.00 4.35
1729 2105 0.179000 ATGGTTCTCTCCGTGATGCC 59.821 55.000 0.00 0.00 0.00 4.40
1731 2107 1.405463 TCGATGGTTCTCTCCGTGATG 59.595 52.381 0.00 0.00 0.00 3.07
1732 2108 1.763968 TCGATGGTTCTCTCCGTGAT 58.236 50.000 0.00 0.00 0.00 3.06
1733 2109 1.676529 GATCGATGGTTCTCTCCGTGA 59.323 52.381 0.54 0.00 0.00 4.35
1736 2112 3.444703 AAAGATCGATGGTTCTCTCCG 57.555 47.619 0.54 0.00 0.00 4.63
1738 2114 5.220303 CGTTCAAAAGATCGATGGTTCTCTC 60.220 44.000 0.54 0.00 0.00 3.20
1739 2115 4.627467 CGTTCAAAAGATCGATGGTTCTCT 59.373 41.667 0.54 0.00 0.00 3.10
1740 2116 4.625742 TCGTTCAAAAGATCGATGGTTCTC 59.374 41.667 0.54 0.00 0.00 2.87
1745 2121 4.375405 CGCTATCGTTCAAAAGATCGATGG 60.375 45.833 17.03 15.53 41.85 3.51
1746 2122 4.681988 CGCTATCGTTCAAAAGATCGATG 58.318 43.478 17.03 10.54 41.85 3.84
1762 2138 4.617808 TGACACTGAGAACTACGCTATC 57.382 45.455 0.00 0.00 0.00 2.08
1765 2141 2.820197 TGATGACACTGAGAACTACGCT 59.180 45.455 0.00 0.00 0.00 5.07
1766 2142 2.917971 GTGATGACACTGAGAACTACGC 59.082 50.000 0.00 0.00 42.99 4.42
1768 2144 7.293745 CAAAATGTGATGACACTGAGAACTAC 58.706 38.462 0.00 0.00 46.07 2.73
1771 2147 4.913924 GCAAAATGTGATGACACTGAGAAC 59.086 41.667 0.00 0.00 46.07 3.01
1776 2152 4.492791 TGAGCAAAATGTGATGACACTG 57.507 40.909 0.00 0.00 46.07 3.66
1777 2153 5.068198 ACTTTGAGCAAAATGTGATGACACT 59.932 36.000 0.00 0.00 46.07 3.55
1798 2174 6.426328 CAGCAGAAGACATAAAGAGACAACTT 59.574 38.462 0.00 0.00 0.00 2.66
1803 2179 4.329528 CAGCAGCAGAAGACATAAAGAGAC 59.670 45.833 0.00 0.00 0.00 3.36
1807 2183 4.252073 AGACAGCAGCAGAAGACATAAAG 58.748 43.478 0.00 0.00 0.00 1.85
1810 2186 2.167281 GGAGACAGCAGCAGAAGACATA 59.833 50.000 0.00 0.00 0.00 2.29
1831 2208 1.153289 CTTCCCTCATGACCCTGCG 60.153 63.158 0.00 0.00 0.00 5.18
1833 2210 4.223923 GGTATATCTTCCCTCATGACCCTG 59.776 50.000 0.00 0.00 0.00 4.45
1967 2344 5.122869 CAGTGCATGACTTGTTATAACAGCT 59.877 40.000 17.36 7.49 40.50 4.24
2006 2383 3.814625 TGTGTTTTGTATCACCAGCTGA 58.185 40.909 17.39 0.00 34.14 4.26
2260 2639 1.202687 TGTGGACCTGTCAGAAAGCAG 60.203 52.381 0.00 0.00 0.00 4.24
2321 2707 5.461526 CACAAGAGTTGACGTCAGATAGAA 58.538 41.667 19.11 0.00 0.00 2.10
2324 2710 3.255888 AGCACAAGAGTTGACGTCAGATA 59.744 43.478 19.11 0.54 0.00 1.98
2331 2717 2.863740 TGTAACAGCACAAGAGTTGACG 59.136 45.455 0.00 0.00 0.00 4.35
2460 2846 6.663734 AGCTCCAATAATGTTAAGGCTAGTT 58.336 36.000 0.00 0.00 0.00 2.24
2474 2860 9.614792 GGAAGTAAGAAATAGAAGCTCCAATAA 57.385 33.333 0.00 0.00 0.00 1.40
2625 3013 7.149202 TGGCCCATGAACTTAATAGATAGTT 57.851 36.000 0.00 0.00 37.31 2.24
2659 3048 5.213891 TGTCTTGAAGAATCTACTGTGCA 57.786 39.130 0.00 0.00 0.00 4.57
2840 3231 1.374758 TCGTGTGTGTGTGTGTGCA 60.375 52.632 0.00 0.00 0.00 4.57
3704 4106 0.389426 CGCTGGGTTAGTAAGCACGT 60.389 55.000 13.76 0.00 36.73 4.49
4478 4897 7.750229 ATTTAGAGACTTTGTTGAGATGCAA 57.250 32.000 0.00 0.00 0.00 4.08
4625 5044 6.511416 GCAGAGATATGTCTGACAACTGTAT 58.489 40.000 28.90 7.89 46.02 2.29
4754 5173 7.816640 TGACAAATATCAAACTAGCAAAGGAC 58.183 34.615 0.00 0.00 0.00 3.85
4758 5177 8.801299 TCCAATGACAAATATCAAACTAGCAAA 58.199 29.630 0.00 0.00 30.82 3.68
4849 5269 5.825593 ATGAGACAGAACAGGTTTCCTAA 57.174 39.130 0.00 0.00 29.64 2.69
4850 5270 5.306937 TGAATGAGACAGAACAGGTTTCCTA 59.693 40.000 0.00 0.00 29.64 2.94
4875 5295 4.829064 TGGAAAGTTTGTCATCTTTCGG 57.171 40.909 17.20 0.00 45.79 4.30
4905 5325 9.864034 CATATACAAAGATCACGGACATTTTAC 57.136 33.333 0.00 0.00 0.00 2.01
4930 5350 5.424757 ACAGTGTAAAGCAACTGTAGAACA 58.575 37.500 6.66 0.00 37.54 3.18
5022 5444 9.126151 TGGTAAACTAAAAGAAATGATGTGTGA 57.874 29.630 0.00 0.00 0.00 3.58
5166 5588 8.860088 AGATAAATGTCAACATATAAAAGGCCC 58.140 33.333 0.00 0.00 35.10 5.80
5167 5589 9.899226 GAGATAAATGTCAACATATAAAAGGCC 57.101 33.333 0.00 0.00 35.10 5.19
5212 5634 1.934589 TCCCATAATCGCAAGTGACG 58.065 50.000 0.00 0.00 39.48 4.35
5220 5642 4.976116 GCAAATACAAGTTCCCATAATCGC 59.024 41.667 0.00 0.00 0.00 4.58
5352 5774 5.704515 CAGTTATATTCTTGAGGAGCCCATG 59.295 44.000 0.00 0.00 0.00 3.66
5399 5822 8.561212 AGTAGACATGACACGAGATAAATCTAC 58.439 37.037 0.00 1.50 37.25 2.59
5407 5830 4.459337 TGACAAGTAGACATGACACGAGAT 59.541 41.667 0.00 0.00 0.00 2.75
5496 5919 1.588404 GTAACATGATGGCTCACGTCG 59.412 52.381 0.00 0.00 37.96 5.12
5500 5923 2.223112 CGCTTGTAACATGATGGCTCAC 60.223 50.000 0.00 0.00 33.22 3.51
5508 5931 3.871006 CCTTGCTATCGCTTGTAACATGA 59.129 43.478 0.00 0.00 36.97 3.07
5543 5966 5.523588 AGAGAGAGAGAGAGAGAGAGAGAA 58.476 45.833 0.00 0.00 0.00 2.87
5572 6060 3.188460 GTCAGGTAAATGTGCACGTGAAT 59.812 43.478 22.23 6.35 40.18 2.57
5631 6119 8.871686 AACAACAAGGAAACAAATCAAGTATC 57.128 30.769 0.00 0.00 0.00 2.24
5654 6142 6.238293 GGTTCTGTGTAACCACTTTCTGTAAC 60.238 42.308 0.94 0.00 46.85 2.50
5753 6241 8.969267 GTGTAATTCGAGAATAAGTACATGAGG 58.031 37.037 0.00 0.00 29.59 3.86
5906 6394 1.940613 GCGAATGCCTTCTCCGTATTT 59.059 47.619 0.13 0.00 33.98 1.40
6150 6643 4.549458 CCACTTGAACAAGCGAAATGATT 58.451 39.130 13.50 0.00 41.99 2.57
6184 6677 5.650266 AGTACCGTGGAAATATGAAATGCAA 59.350 36.000 0.00 0.00 0.00 4.08
6203 6696 9.346725 CTTCTATTTCAAAATCAAGCAAGTACC 57.653 33.333 0.00 0.00 0.00 3.34
6336 6835 4.679373 ATCAGCATCTCAGTACCGAAAT 57.321 40.909 0.00 0.00 0.00 2.17
6546 7056 9.038803 AGTTATTTCCGAACGAGGTAATATTTC 57.961 33.333 0.00 0.00 34.80 2.17
6558 7068 5.981174 TCAGTTCAAAGTTATTTCCGAACG 58.019 37.500 0.00 0.00 36.85 3.95
6560 7070 7.148052 TGGTTTCAGTTCAAAGTTATTTCCGAA 60.148 33.333 0.00 0.00 0.00 4.30
6562 7072 6.416750 GTGGTTTCAGTTCAAAGTTATTTCCG 59.583 38.462 0.00 0.00 0.00 4.30
6580 7097 5.844301 TCGGAAATAACTTACGTGGTTTC 57.156 39.130 12.56 7.13 42.44 2.78
6590 7107 2.568509 TCCCTCCGTTCGGAAATAACTT 59.431 45.455 14.79 0.00 33.41 2.66
6683 7226 1.542492 AGCTCAACTGAAGCCCATTG 58.458 50.000 0.00 0.00 0.00 2.82
6724 7267 0.735471 GAAGCCGCCATTTCCTTCTC 59.265 55.000 0.00 0.00 32.90 2.87
6730 7273 1.138247 CAGCAGAAGCCGCCATTTC 59.862 57.895 0.00 0.00 43.56 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.