Multiple sequence alignment - TraesCS2A01G430800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G430800 chr2A 100.000 2488 0 0 1 2488 684198222 684200709 0.000000e+00 4595.0
1 TraesCS2A01G430800 chr2A 78.537 205 39 4 2134 2336 568453510 568453309 2.010000e-26 130.0
2 TraesCS2A01G430800 chr2D 87.704 2025 130 52 353 2336 540669868 540671814 0.000000e+00 2250.0
3 TraesCS2A01G430800 chr2D 82.383 193 31 2 2140 2332 308700250 308700061 5.510000e-37 165.0
4 TraesCS2A01G430800 chr2D 78.534 191 33 6 2134 2319 422097682 422097495 4.350000e-23 119.0
5 TraesCS2A01G430800 chr2D 92.453 53 3 1 2212 2264 480958794 480958743 9.540000e-10 75.0
6 TraesCS2A01G430800 chr2B 82.744 962 107 38 775 1700 646066103 646067041 0.000000e+00 802.0
7 TraesCS2A01G430800 chr2B 90.244 82 7 1 148 229 646063064 646063144 3.380000e-19 106.0
8 TraesCS2A01G430800 chr2B 75.490 204 38 9 2134 2332 494741026 494740830 3.410000e-14 89.8
9 TraesCS2A01G430800 chr5A 97.260 73 1 1 1397 1468 686110363 686110291 3.360000e-24 122.0
10 TraesCS2A01G430800 chr5A 95.890 73 2 1 1397 1468 413032766 413032838 1.560000e-22 117.0
11 TraesCS2A01G430800 chr5A 95.349 43 1 1 1397 1438 669120554 669120512 1.600000e-07 67.6
12 TraesCS2A01G430800 chr5D 79.365 126 23 3 2178 2302 230021614 230021491 4.410000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G430800 chr2A 684198222 684200709 2487 False 4595 4595 100.000 1 2488 1 chr2A.!!$F1 2487
1 TraesCS2A01G430800 chr2D 540669868 540671814 1946 False 2250 2250 87.704 353 2336 1 chr2D.!!$F1 1983
2 TraesCS2A01G430800 chr2B 646063064 646067041 3977 False 454 802 86.494 148 1700 2 chr2B.!!$F1 1552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
115 116 0.107017 AATCGCTTCCATCACCCCAG 60.107 55.0 0.0 0.0 0.0 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2067 4636 0.105142 TATCCTCCCTTCCTTCCCGG 60.105 60.0 0.0 0.0 0.0 5.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.406156 CAATCTTAATGAAACAACACGCG 57.594 39.130 3.53 3.53 0.00 6.01
23 24 5.143660 CAATCTTAATGAAACAACACGCGA 58.856 37.500 15.93 0.00 0.00 5.87
24 25 4.797693 TCTTAATGAAACAACACGCGAA 57.202 36.364 15.93 0.00 0.00 4.70
25 26 4.768145 TCTTAATGAAACAACACGCGAAG 58.232 39.130 15.93 7.57 0.00 3.79
39 40 2.074124 CGAAGCTCTTGCGAGTTCC 58.926 57.895 0.00 0.00 45.42 3.62
40 41 0.389166 CGAAGCTCTTGCGAGTTCCT 60.389 55.000 0.00 0.00 45.42 3.36
41 42 1.074752 GAAGCTCTTGCGAGTTCCTG 58.925 55.000 0.00 0.00 45.42 3.86
42 43 0.681733 AAGCTCTTGCGAGTTCCTGA 59.318 50.000 0.00 0.00 45.42 3.86
43 44 0.681733 AGCTCTTGCGAGTTCCTGAA 59.318 50.000 0.00 0.00 45.42 3.02
44 45 1.070758 AGCTCTTGCGAGTTCCTGAAA 59.929 47.619 0.00 0.00 45.42 2.69
45 46 1.873591 GCTCTTGCGAGTTCCTGAAAA 59.126 47.619 0.00 0.00 39.53 2.29
46 47 2.290641 GCTCTTGCGAGTTCCTGAAAAA 59.709 45.455 0.00 0.00 39.53 1.94
62 63 3.356814 AAAAATCCACCACCCTCCG 57.643 52.632 0.00 0.00 0.00 4.63
63 64 0.898326 AAAAATCCACCACCCTCCGC 60.898 55.000 0.00 0.00 0.00 5.54
64 65 2.781431 AAAATCCACCACCCTCCGCC 62.781 60.000 0.00 0.00 0.00 6.13
67 68 4.489771 CCACCACCCTCCGCCATC 62.490 72.222 0.00 0.00 0.00 3.51
68 69 3.716195 CACCACCCTCCGCCATCA 61.716 66.667 0.00 0.00 0.00 3.07
69 70 2.933287 ACCACCCTCCGCCATCAA 60.933 61.111 0.00 0.00 0.00 2.57
70 71 2.354729 CCACCCTCCGCCATCAAA 59.645 61.111 0.00 0.00 0.00 2.69
71 72 1.304052 CCACCCTCCGCCATCAAAA 60.304 57.895 0.00 0.00 0.00 2.44
72 73 0.897863 CCACCCTCCGCCATCAAAAA 60.898 55.000 0.00 0.00 0.00 1.94
73 74 0.243636 CACCCTCCGCCATCAAAAAC 59.756 55.000 0.00 0.00 0.00 2.43
74 75 0.898326 ACCCTCCGCCATCAAAAACC 60.898 55.000 0.00 0.00 0.00 3.27
75 76 0.897863 CCCTCCGCCATCAAAAACCA 60.898 55.000 0.00 0.00 0.00 3.67
76 77 0.965439 CCTCCGCCATCAAAAACCAA 59.035 50.000 0.00 0.00 0.00 3.67
77 78 1.067635 CCTCCGCCATCAAAAACCAAG 60.068 52.381 0.00 0.00 0.00 3.61
78 79 1.885887 CTCCGCCATCAAAAACCAAGA 59.114 47.619 0.00 0.00 0.00 3.02
79 80 2.295909 CTCCGCCATCAAAAACCAAGAA 59.704 45.455 0.00 0.00 0.00 2.52
80 81 2.295909 TCCGCCATCAAAAACCAAGAAG 59.704 45.455 0.00 0.00 0.00 2.85
81 82 2.610232 CCGCCATCAAAAACCAAGAAGG 60.610 50.000 0.00 0.00 45.67 3.46
82 83 2.295909 CGCCATCAAAAACCAAGAAGGA 59.704 45.455 0.00 0.00 41.22 3.36
83 84 3.243704 CGCCATCAAAAACCAAGAAGGAA 60.244 43.478 0.00 0.00 41.22 3.36
84 85 4.309933 GCCATCAAAAACCAAGAAGGAAG 58.690 43.478 0.00 0.00 41.22 3.46
85 86 4.800582 GCCATCAAAAACCAAGAAGGAAGG 60.801 45.833 0.00 0.00 41.22 3.46
86 87 4.344968 CCATCAAAAACCAAGAAGGAAGGT 59.655 41.667 0.00 0.00 41.22 3.50
87 88 5.538433 CCATCAAAAACCAAGAAGGAAGGTA 59.462 40.000 0.00 0.00 41.22 3.08
88 89 6.294731 CCATCAAAAACCAAGAAGGAAGGTAG 60.295 42.308 0.00 0.00 41.22 3.18
89 90 6.008696 TCAAAAACCAAGAAGGAAGGTAGA 57.991 37.500 0.00 0.00 41.22 2.59
90 91 6.428295 TCAAAAACCAAGAAGGAAGGTAGAA 58.572 36.000 0.00 0.00 41.22 2.10
91 92 6.320418 TCAAAAACCAAGAAGGAAGGTAGAAC 59.680 38.462 0.00 0.00 41.22 3.01
92 93 5.382664 AAACCAAGAAGGAAGGTAGAACA 57.617 39.130 0.00 0.00 41.22 3.18
93 94 5.584551 AACCAAGAAGGAAGGTAGAACAT 57.415 39.130 0.00 0.00 41.22 2.71
94 95 5.584551 ACCAAGAAGGAAGGTAGAACATT 57.415 39.130 0.00 0.00 41.22 2.71
95 96 5.316987 ACCAAGAAGGAAGGTAGAACATTG 58.683 41.667 0.00 0.00 41.22 2.82
96 97 5.073144 ACCAAGAAGGAAGGTAGAACATTGA 59.927 40.000 0.00 0.00 41.22 2.57
97 98 6.003950 CCAAGAAGGAAGGTAGAACATTGAA 58.996 40.000 0.00 0.00 41.22 2.69
98 99 6.660949 CCAAGAAGGAAGGTAGAACATTGAAT 59.339 38.462 0.00 0.00 41.22 2.57
99 100 7.148171 CCAAGAAGGAAGGTAGAACATTGAATC 60.148 40.741 0.00 0.00 41.22 2.52
100 101 6.109359 AGAAGGAAGGTAGAACATTGAATCG 58.891 40.000 0.00 0.00 0.00 3.34
101 102 4.192317 AGGAAGGTAGAACATTGAATCGC 58.808 43.478 0.00 0.00 0.00 4.58
102 103 4.080863 AGGAAGGTAGAACATTGAATCGCT 60.081 41.667 0.00 0.00 0.00 4.93
103 104 4.636206 GGAAGGTAGAACATTGAATCGCTT 59.364 41.667 0.00 0.00 0.00 4.68
104 105 5.220681 GGAAGGTAGAACATTGAATCGCTTC 60.221 44.000 0.00 0.00 0.00 3.86
105 106 4.192317 AGGTAGAACATTGAATCGCTTCC 58.808 43.478 0.00 0.00 0.00 3.46
106 107 3.938963 GGTAGAACATTGAATCGCTTCCA 59.061 43.478 0.00 0.00 0.00 3.53
107 108 4.576463 GGTAGAACATTGAATCGCTTCCAT 59.424 41.667 0.00 0.00 0.00 3.41
108 109 4.889832 AGAACATTGAATCGCTTCCATC 57.110 40.909 0.00 0.00 0.00 3.51
109 110 4.264253 AGAACATTGAATCGCTTCCATCA 58.736 39.130 0.00 0.00 0.00 3.07
110 111 4.095483 AGAACATTGAATCGCTTCCATCAC 59.905 41.667 0.00 0.00 0.00 3.06
111 112 2.684881 ACATTGAATCGCTTCCATCACC 59.315 45.455 0.00 0.00 0.00 4.02
112 113 1.750193 TTGAATCGCTTCCATCACCC 58.250 50.000 0.00 0.00 0.00 4.61
113 114 0.107214 TGAATCGCTTCCATCACCCC 60.107 55.000 0.00 0.00 0.00 4.95
114 115 0.107214 GAATCGCTTCCATCACCCCA 60.107 55.000 0.00 0.00 0.00 4.96
115 116 0.107017 AATCGCTTCCATCACCCCAG 60.107 55.000 0.00 0.00 0.00 4.45
116 117 2.615227 ATCGCTTCCATCACCCCAGC 62.615 60.000 0.00 0.00 0.00 4.85
117 118 2.356278 GCTTCCATCACCCCAGCA 59.644 61.111 0.00 0.00 0.00 4.41
118 119 1.751927 GCTTCCATCACCCCAGCAG 60.752 63.158 0.00 0.00 0.00 4.24
119 120 1.751927 CTTCCATCACCCCAGCAGC 60.752 63.158 0.00 0.00 0.00 5.25
120 121 3.286694 TTCCATCACCCCAGCAGCC 62.287 63.158 0.00 0.00 0.00 4.85
121 122 4.051167 CCATCACCCCAGCAGCCA 62.051 66.667 0.00 0.00 0.00 4.75
122 123 2.753043 CATCACCCCAGCAGCCAC 60.753 66.667 0.00 0.00 0.00 5.01
123 124 4.052518 ATCACCCCAGCAGCCACC 62.053 66.667 0.00 0.00 0.00 4.61
125 126 4.371417 CACCCCAGCAGCCACCAT 62.371 66.667 0.00 0.00 0.00 3.55
126 127 4.052518 ACCCCAGCAGCCACCATC 62.053 66.667 0.00 0.00 0.00 3.51
127 128 4.828296 CCCCAGCAGCCACCATCC 62.828 72.222 0.00 0.00 0.00 3.51
128 129 3.736224 CCCAGCAGCCACCATCCT 61.736 66.667 0.00 0.00 0.00 3.24
129 130 2.124403 CCAGCAGCCACCATCCTC 60.124 66.667 0.00 0.00 0.00 3.71
130 131 2.677289 CCAGCAGCCACCATCCTCT 61.677 63.158 0.00 0.00 0.00 3.69
131 132 1.153208 CAGCAGCCACCATCCTCTC 60.153 63.158 0.00 0.00 0.00 3.20
132 133 2.191641 GCAGCCACCATCCTCTCC 59.808 66.667 0.00 0.00 0.00 3.71
133 134 2.673200 GCAGCCACCATCCTCTCCA 61.673 63.158 0.00 0.00 0.00 3.86
134 135 1.222936 CAGCCACCATCCTCTCCAC 59.777 63.158 0.00 0.00 0.00 4.02
135 136 1.229625 AGCCACCATCCTCTCCACA 60.230 57.895 0.00 0.00 0.00 4.17
136 137 0.842030 AGCCACCATCCTCTCCACAA 60.842 55.000 0.00 0.00 0.00 3.33
137 138 0.678048 GCCACCATCCTCTCCACAAC 60.678 60.000 0.00 0.00 0.00 3.32
138 139 0.391661 CCACCATCCTCTCCACAACG 60.392 60.000 0.00 0.00 0.00 4.10
139 140 0.608130 CACCATCCTCTCCACAACGA 59.392 55.000 0.00 0.00 0.00 3.85
140 141 0.608640 ACCATCCTCTCCACAACGAC 59.391 55.000 0.00 0.00 0.00 4.34
141 142 0.458543 CCATCCTCTCCACAACGACG 60.459 60.000 0.00 0.00 0.00 5.12
142 143 1.078759 CATCCTCTCCACAACGACGC 61.079 60.000 0.00 0.00 0.00 5.19
143 144 1.532604 ATCCTCTCCACAACGACGCA 61.533 55.000 0.00 0.00 0.00 5.24
144 145 1.300620 CCTCTCCACAACGACGCAA 60.301 57.895 0.00 0.00 0.00 4.85
145 146 0.670546 CCTCTCCACAACGACGCAAT 60.671 55.000 0.00 0.00 0.00 3.56
146 147 1.148310 CTCTCCACAACGACGCAATT 58.852 50.000 0.00 0.00 0.00 2.32
170 171 3.775654 CTGGAGGCGAGGTGGACC 61.776 72.222 0.00 0.00 0.00 4.46
171 172 4.631740 TGGAGGCGAGGTGGACCA 62.632 66.667 0.00 0.00 38.89 4.02
227 228 1.202417 CGCCTTCTGATCGCCTTTAGA 60.202 52.381 0.00 0.00 0.00 2.10
228 229 2.738643 CGCCTTCTGATCGCCTTTAGAA 60.739 50.000 0.00 0.00 0.00 2.10
229 230 3.270877 GCCTTCTGATCGCCTTTAGAAA 58.729 45.455 0.00 0.00 0.00 2.52
230 231 3.064134 GCCTTCTGATCGCCTTTAGAAAC 59.936 47.826 0.00 0.00 0.00 2.78
231 232 3.623510 CCTTCTGATCGCCTTTAGAAACC 59.376 47.826 0.00 0.00 0.00 3.27
232 233 3.261981 TCTGATCGCCTTTAGAAACCC 57.738 47.619 0.00 0.00 0.00 4.11
233 234 2.838202 TCTGATCGCCTTTAGAAACCCT 59.162 45.455 0.00 0.00 0.00 4.34
234 235 4.028131 TCTGATCGCCTTTAGAAACCCTA 58.972 43.478 0.00 0.00 0.00 3.53
235 236 4.468510 TCTGATCGCCTTTAGAAACCCTAA 59.531 41.667 0.00 0.00 35.66 2.69
236 237 5.046159 TCTGATCGCCTTTAGAAACCCTAAA 60.046 40.000 0.00 0.00 43.12 1.85
237 238 5.562635 TGATCGCCTTTAGAAACCCTAAAA 58.437 37.500 0.00 0.00 44.25 1.52
238 239 6.005198 TGATCGCCTTTAGAAACCCTAAAAA 58.995 36.000 0.00 0.00 44.25 1.94
264 265 5.013568 TCCGATCGCCTTTAGAATTGTAA 57.986 39.130 10.32 0.00 0.00 2.41
279 280 3.926058 TTGTAAAGGAGGGGTCTATGC 57.074 47.619 0.00 0.00 0.00 3.14
285 286 1.132267 AGGAGGGGTCTATGCATCCAT 60.132 52.381 0.19 0.00 35.44 3.41
289 290 4.202567 GGAGGGGTCTATGCATCCATTTAA 60.203 45.833 0.19 0.00 32.85 1.52
290 291 4.729868 AGGGGTCTATGCATCCATTTAAC 58.270 43.478 0.19 0.00 32.85 2.01
291 292 4.416848 AGGGGTCTATGCATCCATTTAACT 59.583 41.667 0.19 0.00 32.85 2.24
292 293 5.103515 AGGGGTCTATGCATCCATTTAACTT 60.104 40.000 0.19 0.00 32.85 2.66
296 297 5.300286 GTCTATGCATCCATTTAACTTGCCT 59.700 40.000 0.19 0.00 32.85 4.75
310 311 4.813296 ACTTGCCTAGTTTTCAAACTCG 57.187 40.909 8.22 2.88 45.65 4.18
317 318 5.671329 GCCTAGTTTTCAAACTCGCATACAG 60.671 44.000 8.22 0.00 45.65 2.74
320 321 5.990408 AGTTTTCAAACTCGCATACAGAAG 58.010 37.500 0.00 0.00 45.65 2.85
346 347 6.899393 TGAATAGCAAATTTGTCAGACCTT 57.101 33.333 19.03 4.48 0.00 3.50
347 348 6.680810 TGAATAGCAAATTTGTCAGACCTTG 58.319 36.000 19.03 0.00 0.00 3.61
349 350 6.655078 ATAGCAAATTTGTCAGACCTTGTT 57.345 33.333 19.03 0.00 0.00 2.83
350 351 7.759489 ATAGCAAATTTGTCAGACCTTGTTA 57.241 32.000 19.03 0.43 0.00 2.41
408 574 6.575244 ACTCCCATACACATTTATTCCAGA 57.425 37.500 0.00 0.00 0.00 3.86
420 586 6.379133 ACATTTATTCCAGATGAGTGCACATT 59.621 34.615 21.04 2.34 0.00 2.71
447 615 2.091885 AGTTTCTCCCCTGCAAAGTTCA 60.092 45.455 0.00 0.00 0.00 3.18
455 623 4.021192 TCCCCTGCAAAGTTCATCAAAATC 60.021 41.667 0.00 0.00 0.00 2.17
494 663 1.890876 CACGGATGAGAACAAACCCA 58.109 50.000 0.00 0.00 0.00 4.51
519 688 2.822255 GGCAAGCCGCGTCCAATA 60.822 61.111 4.92 0.00 43.84 1.90
538 707 2.420628 AACAATGTGTCCAATGCGTG 57.579 45.000 0.00 0.00 0.00 5.34
553 722 1.328374 TGCGTGCAGATCATCAAATCG 59.672 47.619 0.00 0.00 0.00 3.34
576 745 3.080300 TGTGGGTTCGGCAAAGATTAT 57.920 42.857 0.00 0.00 0.00 1.28
584 753 5.800438 GGTTCGGCAAAGATTATGAAAGAAC 59.200 40.000 0.00 0.00 35.06 3.01
620 789 4.605064 CCAATGGGGATTGCCGAT 57.395 55.556 0.00 0.00 40.01 4.18
621 790 2.824961 CCAATGGGGATTGCCGATT 58.175 52.632 0.00 0.00 40.01 3.34
622 791 1.993956 CCAATGGGGATTGCCGATTA 58.006 50.000 4.19 0.00 40.01 1.75
623 792 1.613437 CCAATGGGGATTGCCGATTAC 59.387 52.381 4.19 0.00 40.01 1.89
624 793 2.305928 CAATGGGGATTGCCGATTACA 58.694 47.619 4.19 0.00 33.83 2.41
625 794 2.892852 CAATGGGGATTGCCGATTACAT 59.107 45.455 4.19 0.00 33.83 2.29
626 795 2.746279 TGGGGATTGCCGATTACATT 57.254 45.000 0.00 0.00 33.83 2.71
627 796 2.305928 TGGGGATTGCCGATTACATTG 58.694 47.619 0.00 0.00 33.83 2.82
694 982 3.616956 ATGAGGAGACGATGCTTTCAA 57.383 42.857 0.00 0.00 0.00 2.69
697 985 3.055891 TGAGGAGACGATGCTTTCAATCA 60.056 43.478 0.00 0.00 0.00 2.57
705 993 6.750501 AGACGATGCTTTCAATCAATCATTTG 59.249 34.615 0.00 0.00 0.00 2.32
710 998 6.160684 TGCTTTCAATCAATCATTTGACAGG 58.839 36.000 0.00 0.00 44.36 4.00
713 1001 7.977853 GCTTTCAATCAATCATTTGACAGGTAT 59.022 33.333 0.00 0.00 44.36 2.73
752 3247 7.096394 CCGAAATAATAACTTGCAAACGTGTTT 60.096 33.333 7.06 0.00 0.00 2.83
753 3248 8.263269 CGAAATAATAACTTGCAAACGTGTTTT 58.737 29.630 7.06 5.14 0.00 2.43
754 3249 9.352163 GAAATAATAACTTGCAAACGTGTTTTG 57.648 29.630 7.06 0.00 46.57 2.44
761 3256 0.649993 CAAACGTGTTTTGCCTTGCC 59.350 50.000 0.00 0.00 38.37 4.52
762 3257 0.534873 AAACGTGTTTTGCCTTGCCT 59.465 45.000 0.00 0.00 0.00 4.75
763 3258 0.534873 AACGTGTTTTGCCTTGCCTT 59.465 45.000 0.00 0.00 0.00 4.35
764 3259 0.534873 ACGTGTTTTGCCTTGCCTTT 59.465 45.000 0.00 0.00 0.00 3.11
765 3260 1.066502 ACGTGTTTTGCCTTGCCTTTT 60.067 42.857 0.00 0.00 0.00 2.27
766 3261 2.006169 CGTGTTTTGCCTTGCCTTTTT 58.994 42.857 0.00 0.00 0.00 1.94
786 3281 0.249120 TAGGACCCGTGTTCTGCATG 59.751 55.000 0.00 0.00 30.94 4.06
791 3286 2.334946 CCGTGTTCTGCATGGTGGG 61.335 63.158 0.00 0.00 46.66 4.61
809 3306 2.625790 TGGGAAAACGGAGAAACCATTG 59.374 45.455 0.00 0.00 38.90 2.82
812 3309 0.596082 AAACGGAGAAACCATTGGCG 59.404 50.000 1.54 0.00 38.90 5.69
814 3311 2.040544 CGGAGAAACCATTGGCGCT 61.041 57.895 7.64 0.00 38.90 5.92
833 3330 1.671328 CTGTCAGCATGCAATCAGAGG 59.329 52.381 21.98 0.53 34.76 3.69
906 3405 2.410785 CACCACACATGTGCAAAGAG 57.589 50.000 25.68 10.26 44.34 2.85
937 3436 4.941609 GCAGCTAGCTACAGCCAA 57.058 55.556 18.86 0.00 42.84 4.52
938 3437 2.388347 GCAGCTAGCTACAGCCAAC 58.612 57.895 18.86 0.00 42.84 3.77
939 3438 0.391661 GCAGCTAGCTACAGCCAACA 60.392 55.000 18.86 0.00 42.84 3.33
942 3441 1.625818 AGCTAGCTACAGCCAACAAGT 59.374 47.619 17.69 0.00 42.84 3.16
962 3469 1.749063 TGATCCGCACAGTAGTACAGG 59.251 52.381 2.52 0.00 0.00 4.00
963 3470 1.749634 GATCCGCACAGTAGTACAGGT 59.250 52.381 2.52 0.00 0.00 4.00
975 3486 5.184096 CAGTAGTACAGGTGAAGACAGTGAT 59.816 44.000 2.52 0.00 0.00 3.06
1037 3550 4.351054 CCTTCTTGCCCTGGCCGT 62.351 66.667 5.57 0.00 41.09 5.68
1193 3714 1.825622 TGGGTGTGCGCAACATCAA 60.826 52.632 18.58 3.62 42.18 2.57
1225 3746 2.964925 GTTGCGTGTGCTCCGTCA 60.965 61.111 0.00 0.00 43.34 4.35
1252 3776 1.566018 CGTCTTCAAACTGGCCGGAC 61.566 60.000 21.41 0.56 0.00 4.79
1318 3842 1.431036 GACTGCGGAGGTACGTACC 59.569 63.158 33.16 33.16 46.82 3.34
1415 3960 4.405548 AGCTTTTCTTTCTTGGAGCTGAT 58.594 39.130 0.00 0.00 38.88 2.90
1416 3961 4.217983 AGCTTTTCTTTCTTGGAGCTGATG 59.782 41.667 0.00 0.00 38.88 3.07
1417 3962 4.217118 GCTTTTCTTTCTTGGAGCTGATGA 59.783 41.667 0.00 0.00 0.00 2.92
1443 3988 3.798337 GTGTTCTGAAACTGTTGGCAATG 59.202 43.478 1.92 2.21 36.30 2.82
1444 3989 3.181477 TGTTCTGAAACTGTTGGCAATGG 60.181 43.478 1.92 1.84 36.30 3.16
1446 3991 2.886523 TCTGAAACTGTTGGCAATGGAG 59.113 45.455 1.92 2.73 0.00 3.86
1448 3993 3.820467 CTGAAACTGTTGGCAATGGAGTA 59.180 43.478 1.92 0.00 0.00 2.59
1449 3994 4.406456 TGAAACTGTTGGCAATGGAGTAT 58.594 39.130 1.92 0.00 0.00 2.12
1450 3995 5.565509 TGAAACTGTTGGCAATGGAGTATA 58.434 37.500 1.92 0.00 0.00 1.47
1451 3996 6.007076 TGAAACTGTTGGCAATGGAGTATAA 58.993 36.000 1.92 0.00 0.00 0.98
1452 3997 6.663093 TGAAACTGTTGGCAATGGAGTATAAT 59.337 34.615 1.92 0.00 0.00 1.28
1457 4007 5.067674 TGTTGGCAATGGAGTATAATGCTTC 59.932 40.000 1.92 0.00 37.20 3.86
1500 4050 5.129815 ACGTTTCCTTGATGGCCTACTTATA 59.870 40.000 3.32 0.00 35.26 0.98
1552 4106 4.988540 GCTTTGTGTGGGAATAAAAAGTCC 59.011 41.667 0.00 0.00 0.00 3.85
1584 4138 0.028902 GAATTGGCGGCGGATGTTAC 59.971 55.000 9.78 0.00 0.00 2.50
1641 4196 9.097257 CAAACTTGTAACAATGGATGTCTTTTT 57.903 29.630 0.00 0.00 42.99 1.94
1676 4238 6.836527 TCCTTTCCAATTTAGAAGGTTTCACA 59.163 34.615 9.24 0.00 39.67 3.58
1681 4243 8.106247 TCCAATTTAGAAGGTTTCACATGTAC 57.894 34.615 0.00 0.00 0.00 2.90
1705 4274 3.869832 TCACGTTGACGATTTAACCAACA 59.130 39.130 10.87 0.00 43.02 3.33
1709 4278 6.518395 CACGTTGACGATTTAACCAACATAAG 59.482 38.462 10.87 0.00 43.02 1.73
1770 4339 9.927668 AACTCCAAATGTTCTATTTTGTAATGG 57.072 29.630 0.00 0.00 32.23 3.16
1833 4402 6.830114 AATTAGCAGTTTAGAGATACACGC 57.170 37.500 0.00 0.00 0.00 5.34
1850 4419 0.804989 CGCAGGCCTTTAAACCAGAG 59.195 55.000 0.00 0.00 0.00 3.35
1864 4433 7.569599 TTAAACCAGAGAAGAGGGAGTAAAT 57.430 36.000 0.00 0.00 0.00 1.40
1865 4434 6.455690 AAACCAGAGAAGAGGGAGTAAATT 57.544 37.500 0.00 0.00 0.00 1.82
1937 4506 1.700955 TCTATAAGTGGACGGAGCCC 58.299 55.000 0.00 0.00 0.00 5.19
1963 4532 1.522668 ACATACGTGTTGCATGTGCT 58.477 45.000 0.00 0.00 42.66 4.40
2007 4576 2.048603 GTTCCTCCCCACATGCAGC 61.049 63.158 0.00 0.00 0.00 5.25
2039 4608 4.890378 CGATGATTATGGTCAATGATCGC 58.110 43.478 5.09 0.00 42.27 4.58
2067 4636 4.985409 CCGTTATTCCTCTATCAGTTGCTC 59.015 45.833 0.00 0.00 0.00 4.26
2095 4664 5.746990 AGGAAGGGAGGATATTATTGTCG 57.253 43.478 0.00 0.00 0.00 4.35
2098 4667 5.246429 GGAAGGGAGGATATTATTGTCGTCT 59.754 44.000 4.73 0.00 31.05 4.18
2106 4675 6.551601 AGGATATTATTGTCGTCTCTTCACCT 59.448 38.462 0.00 0.00 0.00 4.00
2126 4695 0.828022 CTGCATCCCACCATTGCAAT 59.172 50.000 5.99 5.99 44.99 3.56
2134 4703 5.122707 TCCCACCATTGCAATGATAGTTA 57.877 39.130 35.47 16.19 38.70 2.24
2155 4724 0.240945 GGGCAATTGTTGAGTGGTCG 59.759 55.000 7.40 0.00 0.00 4.79
2164 4733 2.628178 TGTTGAGTGGTCGACTTCATCT 59.372 45.455 16.46 6.84 37.90 2.90
2167 4736 4.703645 TGAGTGGTCGACTTCATCTAAG 57.296 45.455 16.46 0.00 41.33 2.18
2169 4738 4.950475 TGAGTGGTCGACTTCATCTAAGAT 59.050 41.667 16.46 0.00 38.67 2.40
2239 4808 2.737783 CGGCGTTCAACACCTAAACATA 59.262 45.455 0.00 0.00 0.00 2.29
2244 4813 5.063060 GCGTTCAACACCTAAACATACTAGG 59.937 44.000 0.00 0.00 41.61 3.02
2280 4849 3.387397 CCGAGGACAACGAGTTTTACTT 58.613 45.455 0.00 0.00 0.00 2.24
2295 4864 9.063739 CGAGTTTTACTTAGACATAGAGACAAC 57.936 37.037 0.00 0.00 0.00 3.32
2328 4897 6.152638 AGGGGTAATCATGGTAATAATGGG 57.847 41.667 0.00 0.00 0.00 4.00
2337 4906 7.257790 TCATGGTAATAATGGGTGATAGAGG 57.742 40.000 0.00 0.00 0.00 3.69
2338 4907 6.215431 TCATGGTAATAATGGGTGATAGAGGG 59.785 42.308 0.00 0.00 0.00 4.30
2339 4908 4.849810 TGGTAATAATGGGTGATAGAGGGG 59.150 45.833 0.00 0.00 0.00 4.79
2340 4909 5.098663 GGTAATAATGGGTGATAGAGGGGA 58.901 45.833 0.00 0.00 0.00 4.81
2341 4910 5.189934 GGTAATAATGGGTGATAGAGGGGAG 59.810 48.000 0.00 0.00 0.00 4.30
2342 4911 1.439543 AATGGGTGATAGAGGGGAGC 58.560 55.000 0.00 0.00 0.00 4.70
2343 4912 0.474660 ATGGGTGATAGAGGGGAGCC 60.475 60.000 0.00 0.00 0.00 4.70
2344 4913 1.074471 GGGTGATAGAGGGGAGCCA 60.074 63.158 0.00 0.00 0.00 4.75
2345 4914 0.694444 GGGTGATAGAGGGGAGCCAA 60.694 60.000 0.00 0.00 0.00 4.52
2346 4915 1.439543 GGTGATAGAGGGGAGCCAAT 58.560 55.000 0.00 0.00 0.00 3.16
2347 4916 1.072965 GGTGATAGAGGGGAGCCAATG 59.927 57.143 0.00 0.00 0.00 2.82
2348 4917 2.050144 GTGATAGAGGGGAGCCAATGA 58.950 52.381 0.00 0.00 0.00 2.57
2349 4918 2.641815 GTGATAGAGGGGAGCCAATGAT 59.358 50.000 0.00 0.00 0.00 2.45
2350 4919 2.641321 TGATAGAGGGGAGCCAATGATG 59.359 50.000 0.00 0.00 0.00 3.07
2351 4920 2.494888 TAGAGGGGAGCCAATGATGA 57.505 50.000 0.00 0.00 0.00 2.92
2352 4921 1.830486 AGAGGGGAGCCAATGATGAT 58.170 50.000 0.00 0.00 0.00 2.45
2353 4922 1.424302 AGAGGGGAGCCAATGATGATG 59.576 52.381 0.00 0.00 0.00 3.07
2354 4923 1.422781 GAGGGGAGCCAATGATGATGA 59.577 52.381 0.00 0.00 0.00 2.92
2355 4924 2.041350 GAGGGGAGCCAATGATGATGAT 59.959 50.000 0.00 0.00 0.00 2.45
2356 4925 3.262842 AGGGGAGCCAATGATGATGATA 58.737 45.455 0.00 0.00 0.00 2.15
2357 4926 3.266254 AGGGGAGCCAATGATGATGATAG 59.734 47.826 0.00 0.00 0.00 2.08
2358 4927 3.015327 GGGAGCCAATGATGATGATAGC 58.985 50.000 0.00 0.00 0.00 2.97
2359 4928 2.676839 GGAGCCAATGATGATGATAGCG 59.323 50.000 0.00 0.00 0.00 4.26
2360 4929 2.676839 GAGCCAATGATGATGATAGCGG 59.323 50.000 0.00 0.00 0.00 5.52
2361 4930 2.039480 AGCCAATGATGATGATAGCGGT 59.961 45.455 0.00 0.00 0.00 5.68
2362 4931 2.816087 GCCAATGATGATGATAGCGGTT 59.184 45.455 0.00 0.00 0.00 4.44
2363 4932 3.365666 GCCAATGATGATGATAGCGGTTG 60.366 47.826 0.00 0.00 0.00 3.77
2364 4933 4.067192 CCAATGATGATGATAGCGGTTGA 58.933 43.478 0.00 0.00 0.00 3.18
2365 4934 4.698780 CCAATGATGATGATAGCGGTTGAT 59.301 41.667 0.00 0.00 0.00 2.57
2366 4935 5.391629 CCAATGATGATGATAGCGGTTGATG 60.392 44.000 0.00 0.00 0.00 3.07
2367 4936 4.341366 TGATGATGATAGCGGTTGATGT 57.659 40.909 0.00 0.00 0.00 3.06
2368 4937 4.707105 TGATGATGATAGCGGTTGATGTT 58.293 39.130 0.00 0.00 0.00 2.71
2369 4938 4.512571 TGATGATGATAGCGGTTGATGTTG 59.487 41.667 0.00 0.00 0.00 3.33
2370 4939 4.135747 TGATGATAGCGGTTGATGTTGA 57.864 40.909 0.00 0.00 0.00 3.18
2371 4940 4.512484 TGATGATAGCGGTTGATGTTGAA 58.488 39.130 0.00 0.00 0.00 2.69
2372 4941 4.571984 TGATGATAGCGGTTGATGTTGAAG 59.428 41.667 0.00 0.00 0.00 3.02
2373 4942 3.937814 TGATAGCGGTTGATGTTGAAGT 58.062 40.909 0.00 0.00 0.00 3.01
2374 4943 3.932710 TGATAGCGGTTGATGTTGAAGTC 59.067 43.478 0.00 0.00 0.00 3.01
2375 4944 2.550830 AGCGGTTGATGTTGAAGTCT 57.449 45.000 0.00 0.00 0.00 3.24
2376 4945 2.851195 AGCGGTTGATGTTGAAGTCTT 58.149 42.857 0.00 0.00 0.00 3.01
2377 4946 2.808543 AGCGGTTGATGTTGAAGTCTTC 59.191 45.455 5.58 5.58 0.00 2.87
2378 4947 2.808543 GCGGTTGATGTTGAAGTCTTCT 59.191 45.455 13.67 0.00 0.00 2.85
2379 4948 3.251004 GCGGTTGATGTTGAAGTCTTCTT 59.749 43.478 13.67 0.00 36.51 2.52
2380 4949 4.776743 CGGTTGATGTTGAAGTCTTCTTG 58.223 43.478 13.67 0.00 33.64 3.02
2381 4950 4.511454 CGGTTGATGTTGAAGTCTTCTTGA 59.489 41.667 13.67 0.00 33.64 3.02
2382 4951 5.559035 CGGTTGATGTTGAAGTCTTCTTGAC 60.559 44.000 13.67 9.87 45.67 3.18
2383 4952 5.278022 GGTTGATGTTGAAGTCTTCTTGACC 60.278 44.000 13.67 8.12 46.46 4.02
2384 4953 5.034852 TGATGTTGAAGTCTTCTTGACCA 57.965 39.130 13.67 4.30 46.46 4.02
2385 4954 5.059161 TGATGTTGAAGTCTTCTTGACCAG 58.941 41.667 13.67 0.00 46.46 4.00
2386 4955 3.808728 TGTTGAAGTCTTCTTGACCAGG 58.191 45.455 13.67 0.00 46.46 4.45
2387 4956 3.199946 TGTTGAAGTCTTCTTGACCAGGT 59.800 43.478 13.67 0.00 46.46 4.00
2388 4957 4.200092 GTTGAAGTCTTCTTGACCAGGTT 58.800 43.478 13.67 0.00 46.46 3.50
2389 4958 3.808728 TGAAGTCTTCTTGACCAGGTTG 58.191 45.455 13.67 0.00 46.46 3.77
2390 4959 3.454447 TGAAGTCTTCTTGACCAGGTTGA 59.546 43.478 13.67 0.00 46.46 3.18
2391 4960 4.103153 TGAAGTCTTCTTGACCAGGTTGAT 59.897 41.667 13.67 0.00 46.46 2.57
2392 4961 4.013267 AGTCTTCTTGACCAGGTTGATG 57.987 45.455 0.00 0.00 46.46 3.07
2393 4962 3.077359 GTCTTCTTGACCAGGTTGATGG 58.923 50.000 0.00 0.00 46.47 3.51
2394 4963 1.815003 CTTCTTGACCAGGTTGATGGC 59.185 52.381 0.00 0.00 44.80 4.40
2395 4964 0.321564 TCTTGACCAGGTTGATGGCG 60.322 55.000 0.00 0.00 44.80 5.69
2396 4965 0.606401 CTTGACCAGGTTGATGGCGT 60.606 55.000 0.00 0.00 44.80 5.68
2397 4966 0.687920 TTGACCAGGTTGATGGCGTA 59.312 50.000 0.00 0.00 44.80 4.42
2398 4967 0.249120 TGACCAGGTTGATGGCGTAG 59.751 55.000 0.00 0.00 44.80 3.51
2418 4987 3.503998 GGAGCCCTTCCATCCTTTC 57.496 57.895 0.00 0.00 46.01 2.62
2419 4988 0.106469 GGAGCCCTTCCATCCTTTCC 60.106 60.000 0.00 0.00 46.01 3.13
2420 4989 0.106469 GAGCCCTTCCATCCTTTCCC 60.106 60.000 0.00 0.00 0.00 3.97
2421 4990 1.075970 GCCCTTCCATCCTTTCCCC 60.076 63.158 0.00 0.00 0.00 4.81
2422 4991 1.620818 CCCTTCCATCCTTTCCCCC 59.379 63.158 0.00 0.00 0.00 5.40
2447 5016 2.592308 GCCCTTCCACAGGCTAGG 59.408 66.667 0.00 0.00 46.14 3.02
2448 5017 2.301738 GCCCTTCCACAGGCTAGGT 61.302 63.158 5.22 0.00 46.14 3.08
2449 5018 1.853250 GCCCTTCCACAGGCTAGGTT 61.853 60.000 5.22 0.00 46.14 3.50
2450 5019 0.698818 CCCTTCCACAGGCTAGGTTT 59.301 55.000 5.22 0.00 42.29 3.27
2451 5020 1.913419 CCCTTCCACAGGCTAGGTTTA 59.087 52.381 5.22 0.00 42.29 2.01
2452 5021 2.509964 CCCTTCCACAGGCTAGGTTTAT 59.490 50.000 5.22 0.00 42.29 1.40
2453 5022 3.053619 CCCTTCCACAGGCTAGGTTTATT 60.054 47.826 5.22 0.00 42.29 1.40
2454 5023 4.200092 CCTTCCACAGGCTAGGTTTATTC 58.800 47.826 5.22 0.00 35.13 1.75
2455 5024 3.536956 TCCACAGGCTAGGTTTATTCG 57.463 47.619 5.22 0.00 0.00 3.34
2456 5025 2.835764 TCCACAGGCTAGGTTTATTCGT 59.164 45.455 5.22 0.00 0.00 3.85
2457 5026 3.262405 TCCACAGGCTAGGTTTATTCGTT 59.738 43.478 5.22 0.00 0.00 3.85
2458 5027 4.007659 CCACAGGCTAGGTTTATTCGTTT 58.992 43.478 0.00 0.00 0.00 3.60
2459 5028 4.457949 CCACAGGCTAGGTTTATTCGTTTT 59.542 41.667 0.00 0.00 0.00 2.43
2460 5029 5.390613 CACAGGCTAGGTTTATTCGTTTTG 58.609 41.667 0.00 0.00 0.00 2.44
2461 5030 4.457949 ACAGGCTAGGTTTATTCGTTTTGG 59.542 41.667 0.00 0.00 0.00 3.28
2462 5031 4.457949 CAGGCTAGGTTTATTCGTTTTGGT 59.542 41.667 0.00 0.00 0.00 3.67
2463 5032 4.457949 AGGCTAGGTTTATTCGTTTTGGTG 59.542 41.667 0.00 0.00 0.00 4.17
2464 5033 4.380128 GGCTAGGTTTATTCGTTTTGGTGG 60.380 45.833 0.00 0.00 0.00 4.61
2465 5034 4.456566 GCTAGGTTTATTCGTTTTGGTGGA 59.543 41.667 0.00 0.00 0.00 4.02
2466 5035 5.391629 GCTAGGTTTATTCGTTTTGGTGGAG 60.392 44.000 0.00 0.00 0.00 3.86
2467 5036 4.466827 AGGTTTATTCGTTTTGGTGGAGT 58.533 39.130 0.00 0.00 0.00 3.85
2468 5037 4.891168 AGGTTTATTCGTTTTGGTGGAGTT 59.109 37.500 0.00 0.00 0.00 3.01
2469 5038 5.361571 AGGTTTATTCGTTTTGGTGGAGTTT 59.638 36.000 0.00 0.00 0.00 2.66
2470 5039 5.688621 GGTTTATTCGTTTTGGTGGAGTTTC 59.311 40.000 0.00 0.00 0.00 2.78
2471 5040 6.460537 GGTTTATTCGTTTTGGTGGAGTTTCT 60.461 38.462 0.00 0.00 0.00 2.52
2472 5041 4.568152 ATTCGTTTTGGTGGAGTTTCTG 57.432 40.909 0.00 0.00 0.00 3.02
2473 5042 3.269538 TCGTTTTGGTGGAGTTTCTGA 57.730 42.857 0.00 0.00 0.00 3.27
2474 5043 3.815809 TCGTTTTGGTGGAGTTTCTGAT 58.184 40.909 0.00 0.00 0.00 2.90
2475 5044 3.813166 TCGTTTTGGTGGAGTTTCTGATC 59.187 43.478 0.00 0.00 0.00 2.92
2476 5045 3.815401 CGTTTTGGTGGAGTTTCTGATCT 59.185 43.478 0.00 0.00 0.00 2.75
2477 5046 4.275936 CGTTTTGGTGGAGTTTCTGATCTT 59.724 41.667 0.00 0.00 0.00 2.40
2478 5047 5.523369 GTTTTGGTGGAGTTTCTGATCTTG 58.477 41.667 0.00 0.00 0.00 3.02
2479 5048 4.437682 TTGGTGGAGTTTCTGATCTTGT 57.562 40.909 0.00 0.00 0.00 3.16
2480 5049 3.743521 TGGTGGAGTTTCTGATCTTGTG 58.256 45.455 0.00 0.00 0.00 3.33
2481 5050 3.136443 TGGTGGAGTTTCTGATCTTGTGT 59.864 43.478 0.00 0.00 0.00 3.72
2482 5051 3.748568 GGTGGAGTTTCTGATCTTGTGTC 59.251 47.826 0.00 0.00 0.00 3.67
2483 5052 4.503991 GGTGGAGTTTCTGATCTTGTGTCT 60.504 45.833 0.00 0.00 0.00 3.41
2484 5053 4.688413 GTGGAGTTTCTGATCTTGTGTCTC 59.312 45.833 0.00 0.00 0.00 3.36
2485 5054 4.590647 TGGAGTTTCTGATCTTGTGTCTCT 59.409 41.667 0.00 0.00 0.00 3.10
2486 5055 4.928615 GGAGTTTCTGATCTTGTGTCTCTG 59.071 45.833 0.00 0.00 0.00 3.35
2487 5056 5.510520 GGAGTTTCTGATCTTGTGTCTCTGT 60.511 44.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.143660 TCGCGTGTTGTTTCATTAAGATTG 58.856 37.500 5.77 0.00 0.00 2.67
1 2 5.351233 TCGCGTGTTGTTTCATTAAGATT 57.649 34.783 5.77 0.00 0.00 2.40
2 3 5.351233 TTCGCGTGTTGTTTCATTAAGAT 57.649 34.783 5.77 0.00 0.00 2.40
3 4 4.768145 CTTCGCGTGTTGTTTCATTAAGA 58.232 39.130 5.77 0.00 0.00 2.10
4 5 3.357823 GCTTCGCGTGTTGTTTCATTAAG 59.642 43.478 5.77 0.00 0.00 1.85
5 6 3.002862 AGCTTCGCGTGTTGTTTCATTAA 59.997 39.130 5.77 0.00 0.00 1.40
6 7 2.546368 AGCTTCGCGTGTTGTTTCATTA 59.454 40.909 5.77 0.00 0.00 1.90
7 8 1.333619 AGCTTCGCGTGTTGTTTCATT 59.666 42.857 5.77 0.00 0.00 2.57
8 9 0.944386 AGCTTCGCGTGTTGTTTCAT 59.056 45.000 5.77 0.00 0.00 2.57
9 10 0.303493 GAGCTTCGCGTGTTGTTTCA 59.697 50.000 5.77 0.00 0.00 2.69
10 11 0.582005 AGAGCTTCGCGTGTTGTTTC 59.418 50.000 5.77 0.00 0.00 2.78
11 12 1.014352 AAGAGCTTCGCGTGTTGTTT 58.986 45.000 5.77 0.00 0.00 2.83
12 13 0.304705 CAAGAGCTTCGCGTGTTGTT 59.695 50.000 5.77 0.52 0.00 2.83
13 14 1.934463 CAAGAGCTTCGCGTGTTGT 59.066 52.632 5.77 0.00 0.00 3.32
14 15 1.439365 GCAAGAGCTTCGCGTGTTG 60.439 57.895 5.77 2.67 37.91 3.33
15 16 2.939022 GCAAGAGCTTCGCGTGTT 59.061 55.556 5.77 0.00 37.91 3.32
16 17 3.406361 CGCAAGAGCTTCGCGTGT 61.406 61.111 5.77 0.00 43.86 4.49
44 45 0.898326 GCGGAGGGTGGTGGATTTTT 60.898 55.000 0.00 0.00 0.00 1.94
45 46 1.304134 GCGGAGGGTGGTGGATTTT 60.304 57.895 0.00 0.00 0.00 1.82
46 47 2.355115 GCGGAGGGTGGTGGATTT 59.645 61.111 0.00 0.00 0.00 2.17
47 48 3.728373 GGCGGAGGGTGGTGGATT 61.728 66.667 0.00 0.00 0.00 3.01
50 51 4.489771 GATGGCGGAGGGTGGTGG 62.490 72.222 0.00 0.00 0.00 4.61
51 52 2.762969 TTTGATGGCGGAGGGTGGTG 62.763 60.000 0.00 0.00 0.00 4.17
52 53 2.075355 TTTTGATGGCGGAGGGTGGT 62.075 55.000 0.00 0.00 0.00 4.16
53 54 0.897863 TTTTTGATGGCGGAGGGTGG 60.898 55.000 0.00 0.00 0.00 4.61
54 55 0.243636 GTTTTTGATGGCGGAGGGTG 59.756 55.000 0.00 0.00 0.00 4.61
55 56 0.898326 GGTTTTTGATGGCGGAGGGT 60.898 55.000 0.00 0.00 0.00 4.34
56 57 0.897863 TGGTTTTTGATGGCGGAGGG 60.898 55.000 0.00 0.00 0.00 4.30
57 58 0.965439 TTGGTTTTTGATGGCGGAGG 59.035 50.000 0.00 0.00 0.00 4.30
58 59 1.885887 TCTTGGTTTTTGATGGCGGAG 59.114 47.619 0.00 0.00 0.00 4.63
59 60 1.988293 TCTTGGTTTTTGATGGCGGA 58.012 45.000 0.00 0.00 0.00 5.54
60 61 2.610232 CCTTCTTGGTTTTTGATGGCGG 60.610 50.000 0.00 0.00 0.00 6.13
61 62 2.295909 TCCTTCTTGGTTTTTGATGGCG 59.704 45.455 0.00 0.00 37.07 5.69
62 63 4.309933 CTTCCTTCTTGGTTTTTGATGGC 58.690 43.478 0.00 0.00 37.07 4.40
63 64 4.344968 ACCTTCCTTCTTGGTTTTTGATGG 59.655 41.667 0.00 0.00 37.07 3.51
64 65 5.535753 ACCTTCCTTCTTGGTTTTTGATG 57.464 39.130 0.00 0.00 37.07 3.07
65 66 6.610830 TCTACCTTCCTTCTTGGTTTTTGAT 58.389 36.000 0.00 0.00 35.48 2.57
66 67 6.008696 TCTACCTTCCTTCTTGGTTTTTGA 57.991 37.500 0.00 0.00 35.48 2.69
67 68 6.096282 TGTTCTACCTTCCTTCTTGGTTTTTG 59.904 38.462 0.00 0.00 35.48 2.44
68 69 6.192044 TGTTCTACCTTCCTTCTTGGTTTTT 58.808 36.000 0.00 0.00 35.48 1.94
69 70 5.762279 TGTTCTACCTTCCTTCTTGGTTTT 58.238 37.500 0.00 0.00 35.48 2.43
70 71 5.382664 TGTTCTACCTTCCTTCTTGGTTT 57.617 39.130 0.00 0.00 35.48 3.27
71 72 5.584551 ATGTTCTACCTTCCTTCTTGGTT 57.415 39.130 0.00 0.00 35.48 3.67
72 73 5.073144 TCAATGTTCTACCTTCCTTCTTGGT 59.927 40.000 0.00 0.00 37.83 3.67
73 74 5.560724 TCAATGTTCTACCTTCCTTCTTGG 58.439 41.667 0.00 0.00 37.10 3.61
74 75 7.413438 CGATTCAATGTTCTACCTTCCTTCTTG 60.413 40.741 0.00 0.00 0.00 3.02
75 76 6.595716 CGATTCAATGTTCTACCTTCCTTCTT 59.404 38.462 0.00 0.00 0.00 2.52
76 77 6.109359 CGATTCAATGTTCTACCTTCCTTCT 58.891 40.000 0.00 0.00 0.00 2.85
77 78 5.220681 GCGATTCAATGTTCTACCTTCCTTC 60.221 44.000 0.00 0.00 0.00 3.46
78 79 4.636206 GCGATTCAATGTTCTACCTTCCTT 59.364 41.667 0.00 0.00 0.00 3.36
79 80 4.080863 AGCGATTCAATGTTCTACCTTCCT 60.081 41.667 0.00 0.00 0.00 3.36
80 81 4.192317 AGCGATTCAATGTTCTACCTTCC 58.808 43.478 0.00 0.00 0.00 3.46
81 82 5.220681 GGAAGCGATTCAATGTTCTACCTTC 60.221 44.000 16.24 0.00 0.00 3.46
82 83 4.636206 GGAAGCGATTCAATGTTCTACCTT 59.364 41.667 16.24 0.00 0.00 3.50
83 84 4.192317 GGAAGCGATTCAATGTTCTACCT 58.808 43.478 16.24 0.00 0.00 3.08
84 85 3.938963 TGGAAGCGATTCAATGTTCTACC 59.061 43.478 16.24 0.00 0.00 3.18
85 86 5.294306 TGATGGAAGCGATTCAATGTTCTAC 59.706 40.000 16.24 0.00 0.00 2.59
86 87 5.294306 GTGATGGAAGCGATTCAATGTTCTA 59.706 40.000 16.24 0.00 0.00 2.10
87 88 4.095483 GTGATGGAAGCGATTCAATGTTCT 59.905 41.667 16.24 0.00 0.00 3.01
88 89 4.346129 GTGATGGAAGCGATTCAATGTTC 58.654 43.478 16.24 0.00 0.00 3.18
89 90 3.129287 GGTGATGGAAGCGATTCAATGTT 59.871 43.478 16.24 0.00 0.00 2.71
90 91 2.684881 GGTGATGGAAGCGATTCAATGT 59.315 45.455 16.24 0.00 0.00 2.71
91 92 2.033801 GGGTGATGGAAGCGATTCAATG 59.966 50.000 16.24 0.00 0.00 2.82
92 93 2.301346 GGGTGATGGAAGCGATTCAAT 58.699 47.619 16.24 9.74 0.00 2.57
93 94 1.681780 GGGGTGATGGAAGCGATTCAA 60.682 52.381 16.24 3.84 0.00 2.69
94 95 0.107214 GGGGTGATGGAAGCGATTCA 60.107 55.000 16.24 1.82 0.00 2.57
95 96 0.107214 TGGGGTGATGGAAGCGATTC 60.107 55.000 4.45 4.45 0.00 2.52
96 97 0.107017 CTGGGGTGATGGAAGCGATT 60.107 55.000 0.00 0.00 0.00 3.34
97 98 1.528824 CTGGGGTGATGGAAGCGAT 59.471 57.895 0.00 0.00 0.00 4.58
98 99 2.989639 CTGGGGTGATGGAAGCGA 59.010 61.111 0.00 0.00 0.00 4.93
99 100 2.825836 GCTGGGGTGATGGAAGCG 60.826 66.667 0.00 0.00 0.00 4.68
100 101 1.751927 CTGCTGGGGTGATGGAAGC 60.752 63.158 0.00 0.00 0.00 3.86
101 102 1.751927 GCTGCTGGGGTGATGGAAG 60.752 63.158 0.00 0.00 0.00 3.46
102 103 2.356278 GCTGCTGGGGTGATGGAA 59.644 61.111 0.00 0.00 0.00 3.53
103 104 3.731728 GGCTGCTGGGGTGATGGA 61.732 66.667 0.00 0.00 0.00 3.41
104 105 4.051167 TGGCTGCTGGGGTGATGG 62.051 66.667 0.00 0.00 0.00 3.51
105 106 2.753043 GTGGCTGCTGGGGTGATG 60.753 66.667 0.00 0.00 0.00 3.07
106 107 4.052518 GGTGGCTGCTGGGGTGAT 62.053 66.667 0.00 0.00 0.00 3.06
108 109 4.371417 ATGGTGGCTGCTGGGGTG 62.371 66.667 0.00 0.00 0.00 4.61
109 110 4.052518 GATGGTGGCTGCTGGGGT 62.053 66.667 0.00 0.00 0.00 4.95
110 111 4.828296 GGATGGTGGCTGCTGGGG 62.828 72.222 0.00 0.00 0.00 4.96
111 112 3.711059 GAGGATGGTGGCTGCTGGG 62.711 68.421 0.00 0.00 0.00 4.45
112 113 2.124403 GAGGATGGTGGCTGCTGG 60.124 66.667 0.00 0.00 0.00 4.85
113 114 1.153208 GAGAGGATGGTGGCTGCTG 60.153 63.158 0.00 0.00 0.00 4.41
114 115 2.373707 GGAGAGGATGGTGGCTGCT 61.374 63.158 0.00 0.00 0.00 4.24
115 116 2.191641 GGAGAGGATGGTGGCTGC 59.808 66.667 0.00 0.00 0.00 5.25
116 117 1.222936 GTGGAGAGGATGGTGGCTG 59.777 63.158 0.00 0.00 0.00 4.85
117 118 0.842030 TTGTGGAGAGGATGGTGGCT 60.842 55.000 0.00 0.00 0.00 4.75
118 119 0.678048 GTTGTGGAGAGGATGGTGGC 60.678 60.000 0.00 0.00 0.00 5.01
119 120 0.391661 CGTTGTGGAGAGGATGGTGG 60.392 60.000 0.00 0.00 0.00 4.61
120 121 0.608130 TCGTTGTGGAGAGGATGGTG 59.392 55.000 0.00 0.00 0.00 4.17
121 122 0.608640 GTCGTTGTGGAGAGGATGGT 59.391 55.000 0.00 0.00 0.00 3.55
122 123 0.458543 CGTCGTTGTGGAGAGGATGG 60.459 60.000 0.00 0.00 0.00 3.51
123 124 1.078759 GCGTCGTTGTGGAGAGGATG 61.079 60.000 0.00 0.00 0.00 3.51
124 125 1.215647 GCGTCGTTGTGGAGAGGAT 59.784 57.895 0.00 0.00 0.00 3.24
125 126 1.740332 TTGCGTCGTTGTGGAGAGGA 61.740 55.000 0.00 0.00 0.00 3.71
126 127 0.670546 ATTGCGTCGTTGTGGAGAGG 60.671 55.000 0.00 0.00 0.00 3.69
127 128 1.136252 CAATTGCGTCGTTGTGGAGAG 60.136 52.381 0.00 0.00 0.00 3.20
128 129 0.865111 CAATTGCGTCGTTGTGGAGA 59.135 50.000 0.00 0.00 0.00 3.71
129 130 0.110238 CCAATTGCGTCGTTGTGGAG 60.110 55.000 0.00 0.00 0.00 3.86
130 131 1.511318 CCCAATTGCGTCGTTGTGGA 61.511 55.000 0.00 0.00 0.00 4.02
131 132 1.081509 CCCAATTGCGTCGTTGTGG 60.082 57.895 0.00 0.00 0.00 4.17
132 133 1.729131 GCCCAATTGCGTCGTTGTG 60.729 57.895 0.00 0.00 0.00 3.33
133 134 2.642700 GCCCAATTGCGTCGTTGT 59.357 55.556 0.00 0.00 0.00 3.32
134 135 2.126502 GGCCCAATTGCGTCGTTG 60.127 61.111 0.00 0.00 0.00 4.10
135 136 2.596046 TGGCCCAATTGCGTCGTT 60.596 55.556 0.00 0.00 0.00 3.85
136 137 3.361977 GTGGCCCAATTGCGTCGT 61.362 61.111 0.00 0.00 0.00 4.34
137 138 3.055719 AGTGGCCCAATTGCGTCG 61.056 61.111 0.00 0.00 0.00 5.12
138 139 2.568090 CAGTGGCCCAATTGCGTC 59.432 61.111 0.00 0.00 0.00 5.19
139 140 2.990967 CCAGTGGCCCAATTGCGT 60.991 61.111 0.00 0.00 0.00 5.24
140 141 2.676121 TCCAGTGGCCCAATTGCG 60.676 61.111 3.51 0.00 0.00 4.85
141 142 2.353610 CCTCCAGTGGCCCAATTGC 61.354 63.158 3.51 0.00 0.00 3.56
142 143 2.353610 GCCTCCAGTGGCCCAATTG 61.354 63.158 3.51 0.00 46.82 2.32
143 144 2.037847 GCCTCCAGTGGCCCAATT 59.962 61.111 3.51 0.00 46.82 2.32
175 176 3.699955 TTCCTCTCGCATGCGTCGG 62.700 63.158 36.50 30.97 40.74 4.79
178 179 2.507102 CGTTCCTCTCGCATGCGT 60.507 61.111 36.50 0.00 40.74 5.24
180 181 2.852495 TTCCCGTTCCTCTCGCATGC 62.852 60.000 7.91 7.91 0.00 4.06
182 183 1.218316 GTTCCCGTTCCTCTCGCAT 59.782 57.895 0.00 0.00 0.00 4.73
183 184 2.654877 GTTCCCGTTCCTCTCGCA 59.345 61.111 0.00 0.00 0.00 5.10
186 187 0.902531 TCATGGTTCCCGTTCCTCTC 59.097 55.000 0.00 0.00 0.00 3.20
236 237 3.934068 TCTAAAGGCGATCGGAGTTTTT 58.066 40.909 18.30 0.00 0.00 1.94
237 238 3.604875 TCTAAAGGCGATCGGAGTTTT 57.395 42.857 18.30 2.87 0.00 2.43
238 239 3.604875 TTCTAAAGGCGATCGGAGTTT 57.395 42.857 18.30 4.07 0.00 2.66
239 240 3.821421 ATTCTAAAGGCGATCGGAGTT 57.179 42.857 18.30 0.00 0.00 3.01
240 241 3.118738 ACAATTCTAAAGGCGATCGGAGT 60.119 43.478 18.30 0.00 0.00 3.85
241 242 3.458189 ACAATTCTAAAGGCGATCGGAG 58.542 45.455 18.30 0.00 0.00 4.63
242 243 3.536956 ACAATTCTAAAGGCGATCGGA 57.463 42.857 18.30 0.87 0.00 4.55
243 244 5.277345 CCTTTACAATTCTAAAGGCGATCGG 60.277 44.000 18.30 0.00 43.66 4.18
244 245 5.522460 TCCTTTACAATTCTAAAGGCGATCG 59.478 40.000 21.34 11.69 46.98 3.69
245 246 6.017852 CCTCCTTTACAATTCTAAAGGCGATC 60.018 42.308 21.34 0.00 46.98 3.69
246 247 5.823045 CCTCCTTTACAATTCTAAAGGCGAT 59.177 40.000 21.34 0.00 46.98 4.58
247 248 5.183228 CCTCCTTTACAATTCTAAAGGCGA 58.817 41.667 21.34 9.35 46.98 5.54
248 249 4.335594 CCCTCCTTTACAATTCTAAAGGCG 59.664 45.833 21.34 17.03 46.98 5.52
249 250 4.645136 CCCCTCCTTTACAATTCTAAAGGC 59.355 45.833 21.34 0.00 46.98 4.35
251 252 6.722328 AGACCCCTCCTTTACAATTCTAAAG 58.278 40.000 6.31 6.31 34.64 1.85
252 253 6.713731 AGACCCCTCCTTTACAATTCTAAA 57.286 37.500 0.00 0.00 0.00 1.85
253 254 7.637301 GCATAGACCCCTCCTTTACAATTCTAA 60.637 40.741 0.00 0.00 0.00 2.10
254 255 6.183361 GCATAGACCCCTCCTTTACAATTCTA 60.183 42.308 0.00 0.00 0.00 2.10
255 256 5.398012 GCATAGACCCCTCCTTTACAATTCT 60.398 44.000 0.00 0.00 0.00 2.40
256 257 4.822350 GCATAGACCCCTCCTTTACAATTC 59.178 45.833 0.00 0.00 0.00 2.17
264 265 1.345422 TGGATGCATAGACCCCTCCTT 60.345 52.381 0.00 0.00 0.00 3.36
274 275 5.779529 AGGCAAGTTAAATGGATGCATAG 57.220 39.130 0.00 0.00 38.73 2.23
339 340 2.808543 GCTTCTGGTGTAACAAGGTCTG 59.191 50.000 0.00 0.00 38.85 3.51
346 347 3.494398 GGACTCTTGCTTCTGGTGTAACA 60.494 47.826 0.00 0.00 39.98 2.41
347 348 3.067833 GGACTCTTGCTTCTGGTGTAAC 58.932 50.000 0.00 0.00 0.00 2.50
349 350 2.300152 CAGGACTCTTGCTTCTGGTGTA 59.700 50.000 0.00 0.00 0.00 2.90
350 351 1.071385 CAGGACTCTTGCTTCTGGTGT 59.929 52.381 0.00 0.00 0.00 4.16
408 574 2.511659 ACTGCTGAAATGTGCACTCAT 58.488 42.857 19.41 0.41 35.20 2.90
447 615 2.391678 GGGACATGGCAGGATTTTGAT 58.608 47.619 5.99 0.00 0.00 2.57
482 651 1.815003 CTGCTCCATGGGTTTGTTCTC 59.185 52.381 13.02 0.00 0.00 2.87
519 688 1.602668 GCACGCATTGGACACATTGTT 60.603 47.619 0.00 0.00 32.11 2.83
538 707 4.534168 CCACATTCGATTTGATGATCTGC 58.466 43.478 1.91 0.00 0.00 4.26
553 722 1.243902 TCTTTGCCGAACCCACATTC 58.756 50.000 0.00 0.00 0.00 2.67
576 745 6.379703 TCTGACCCTTTGATTTTGTTCTTTCA 59.620 34.615 0.00 0.00 0.00 2.69
615 784 5.611796 TCATGCTTATCAATGTAATCGGC 57.388 39.130 0.00 0.00 0.00 5.54
617 786 9.836076 AATCAATCATGCTTATCAATGTAATCG 57.164 29.630 0.00 0.00 0.00 3.34
621 790 9.797642 AGGTAATCAATCATGCTTATCAATGTA 57.202 29.630 0.00 0.00 0.00 2.29
622 791 8.701908 AGGTAATCAATCATGCTTATCAATGT 57.298 30.769 0.00 0.00 0.00 2.71
626 795 9.625747 TGTTTAGGTAATCAATCATGCTTATCA 57.374 29.630 0.00 0.00 0.00 2.15
644 813 6.439675 TCGCTTTGTTTAGTTTGTTTAGGT 57.560 33.333 0.00 0.00 0.00 3.08
645 814 7.743520 TTTCGCTTTGTTTAGTTTGTTTAGG 57.256 32.000 0.00 0.00 0.00 2.69
646 815 9.829637 GATTTTCGCTTTGTTTAGTTTGTTTAG 57.170 29.630 0.00 0.00 0.00 1.85
694 982 9.745018 CCCTTATATACCTGTCAAATGATTGAT 57.255 33.333 0.00 0.00 46.67 2.57
697 985 7.470192 CCCCCTTATATACCTGTCAAATGATT 58.530 38.462 0.00 0.00 0.00 2.57
763 3258 2.223745 GCAGAACACGGGTCCTAAAAA 58.776 47.619 0.00 0.00 0.00 1.94
764 3259 1.141254 TGCAGAACACGGGTCCTAAAA 59.859 47.619 0.00 0.00 0.00 1.52
765 3260 0.759959 TGCAGAACACGGGTCCTAAA 59.240 50.000 0.00 0.00 0.00 1.85
766 3261 0.981183 ATGCAGAACACGGGTCCTAA 59.019 50.000 0.00 0.00 0.00 2.69
767 3262 0.249120 CATGCAGAACACGGGTCCTA 59.751 55.000 0.00 0.00 0.00 2.94
768 3263 1.003355 CATGCAGAACACGGGTCCT 60.003 57.895 0.00 0.00 0.00 3.85
769 3264 2.040544 CCATGCAGAACACGGGTCC 61.041 63.158 0.00 0.00 0.00 4.46
770 3265 1.302511 ACCATGCAGAACACGGGTC 60.303 57.895 0.00 0.00 35.31 4.46
771 3266 1.600636 CACCATGCAGAACACGGGT 60.601 57.895 0.00 0.00 35.31 5.28
772 3267 2.334946 CCACCATGCAGAACACGGG 61.335 63.158 0.00 0.00 35.31 5.28
773 3268 2.334946 CCCACCATGCAGAACACGG 61.335 63.158 0.00 0.00 37.74 4.94
774 3269 0.888736 TTCCCACCATGCAGAACACG 60.889 55.000 0.00 0.00 0.00 4.49
775 3270 1.327303 TTTCCCACCATGCAGAACAC 58.673 50.000 0.00 0.00 0.00 3.32
776 3271 1.686052 GTTTTCCCACCATGCAGAACA 59.314 47.619 0.00 0.00 0.00 3.18
777 3272 1.335872 CGTTTTCCCACCATGCAGAAC 60.336 52.381 0.00 0.00 0.00 3.01
778 3273 0.958091 CGTTTTCCCACCATGCAGAA 59.042 50.000 0.00 0.00 0.00 3.02
779 3274 0.893270 CCGTTTTCCCACCATGCAGA 60.893 55.000 0.00 0.00 0.00 4.26
786 3281 0.956633 GGTTTCTCCGTTTTCCCACC 59.043 55.000 0.00 0.00 0.00 4.61
791 3286 2.672714 GCCAATGGTTTCTCCGTTTTC 58.327 47.619 0.00 0.00 42.93 2.29
809 3306 2.931713 GATTGCATGCTGACAGCGCC 62.932 60.000 22.00 12.88 46.26 6.53
812 3309 1.064208 CTCTGATTGCATGCTGACAGC 59.936 52.381 20.86 20.86 42.82 4.40
814 3311 1.680860 CCCTCTGATTGCATGCTGACA 60.681 52.381 20.33 14.03 0.00 3.58
833 3330 2.749441 GAGGAAGCACTGCAGGCC 60.749 66.667 19.93 10.82 0.00 5.19
873 3372 5.614324 TGTGTGGTGCTTCTTATATAGCT 57.386 39.130 0.00 0.00 38.22 3.32
900 3399 0.250295 TTGCCGTGGGTCTCTCTTTG 60.250 55.000 0.00 0.00 0.00 2.77
902 3401 1.674057 CTTGCCGTGGGTCTCTCTT 59.326 57.895 0.00 0.00 0.00 2.85
904 3403 2.435059 GCTTGCCGTGGGTCTCTC 60.435 66.667 0.00 0.00 0.00 3.20
905 3404 3.241530 TGCTTGCCGTGGGTCTCT 61.242 61.111 0.00 0.00 0.00 3.10
906 3405 2.743928 CTGCTTGCCGTGGGTCTC 60.744 66.667 0.00 0.00 0.00 3.36
933 3432 1.210155 GTGCGGATCACTTGTTGGC 59.790 57.895 0.00 0.00 42.38 4.52
934 3433 0.518636 CTGTGCGGATCACTTGTTGG 59.481 55.000 0.00 0.00 45.81 3.77
935 3434 1.229428 ACTGTGCGGATCACTTGTTG 58.771 50.000 0.00 0.00 45.81 3.33
936 3435 2.037251 ACTACTGTGCGGATCACTTGTT 59.963 45.455 0.00 0.00 45.81 2.83
937 3436 1.618837 ACTACTGTGCGGATCACTTGT 59.381 47.619 0.00 0.00 45.81 3.16
938 3437 2.370281 ACTACTGTGCGGATCACTTG 57.630 50.000 0.00 0.00 45.81 3.16
939 3438 2.823747 TGTACTACTGTGCGGATCACTT 59.176 45.455 0.00 0.00 45.81 3.16
942 3441 1.749063 CCTGTACTACTGTGCGGATCA 59.251 52.381 0.00 0.00 37.35 2.92
952 3451 4.726583 TCACTGTCTTCACCTGTACTACT 58.273 43.478 0.00 0.00 0.00 2.57
953 3452 5.183331 TGATCACTGTCTTCACCTGTACTAC 59.817 44.000 0.00 0.00 0.00 2.73
962 3469 3.864583 GCTCTGATGATCACTGTCTTCAC 59.135 47.826 0.00 0.00 31.45 3.18
963 3470 3.512724 TGCTCTGATGATCACTGTCTTCA 59.487 43.478 0.00 0.00 33.09 3.02
975 3486 1.203287 CTCTCCGTGTTGCTCTGATGA 59.797 52.381 0.00 0.00 0.00 2.92
1179 3700 0.950116 TCATGTTGATGTTGCGCACA 59.050 45.000 11.12 12.74 40.71 4.57
1193 3714 2.610859 AACCGGGGCTCCTCATGT 60.611 61.111 6.32 0.00 0.00 3.21
1225 3746 2.404215 CAGTTTGAAGACGTCGGACAT 58.596 47.619 10.46 0.00 0.00 3.06
1252 3776 1.396301 GATTGCGACTTGAGGCTTCAG 59.604 52.381 0.00 0.00 34.15 3.02
1360 3895 9.947669 ACACATATTACTCGTTGAGAAGTATAC 57.052 33.333 0.00 0.00 33.32 1.47
1361 3896 9.946165 CACACATATTACTCGTTGAGAAGTATA 57.054 33.333 0.00 0.00 33.32 1.47
1362 3897 7.435488 GCACACATATTACTCGTTGAGAAGTAT 59.565 37.037 0.00 0.00 33.32 2.12
1415 3960 5.008613 GCCAACAGTTTCAGAACACTATTCA 59.991 40.000 0.00 0.00 38.26 2.57
1416 3961 5.008613 TGCCAACAGTTTCAGAACACTATTC 59.991 40.000 0.00 0.00 38.26 1.75
1417 3962 4.887071 TGCCAACAGTTTCAGAACACTATT 59.113 37.500 0.00 0.00 38.26 1.73
1443 3988 6.853362 GCGAAATCAAAGAAGCATTATACTCC 59.147 38.462 0.00 0.00 0.00 3.85
1444 3989 7.409697 TGCGAAATCAAAGAAGCATTATACTC 58.590 34.615 0.00 0.00 0.00 2.59
1446 3991 6.634436 CCTGCGAAATCAAAGAAGCATTATAC 59.366 38.462 0.00 0.00 33.96 1.47
1448 3993 5.126061 ACCTGCGAAATCAAAGAAGCATTAT 59.874 36.000 0.00 0.00 33.96 1.28
1449 3994 4.458989 ACCTGCGAAATCAAAGAAGCATTA 59.541 37.500 0.00 0.00 33.96 1.90
1450 3995 3.256631 ACCTGCGAAATCAAAGAAGCATT 59.743 39.130 0.00 0.00 33.96 3.56
1451 3996 2.821969 ACCTGCGAAATCAAAGAAGCAT 59.178 40.909 0.00 0.00 33.96 3.79
1452 3997 2.229792 ACCTGCGAAATCAAAGAAGCA 58.770 42.857 0.00 0.00 0.00 3.91
1457 4007 3.059188 ACGTGTTACCTGCGAAATCAAAG 60.059 43.478 0.00 0.00 0.00 2.77
1552 4106 1.269413 GCCAATTCCATTCATCCGCAG 60.269 52.381 0.00 0.00 0.00 5.18
1588 4142 2.097825 GATGAAACAGAGCAGGCCAAT 58.902 47.619 5.01 0.00 0.00 3.16
1660 4215 7.390718 GTGAGGTACATGTGAAACCTTCTAAAT 59.609 37.037 17.87 0.00 43.69 1.40
1676 4238 3.587797 AATCGTCAACGTGAGGTACAT 57.412 42.857 2.09 0.00 40.80 2.29
1681 4243 3.061322 TGGTTAAATCGTCAACGTGAGG 58.939 45.455 2.09 0.00 40.80 3.86
1811 4380 5.902681 TGCGTGTATCTCTAAACTGCTAAT 58.097 37.500 0.00 0.00 0.00 1.73
1818 4387 2.159085 AGGCCTGCGTGTATCTCTAAAC 60.159 50.000 3.11 0.00 0.00 2.01
1833 4402 4.006319 CTCTTCTCTGGTTTAAAGGCCTG 58.994 47.826 5.69 0.00 0.00 4.85
1905 4474 5.991606 TCCACTTATAGAAGCATACATGTGC 59.008 40.000 9.11 4.14 45.38 4.57
1963 4532 0.389817 GGCGTGTGTCATACTGAGCA 60.390 55.000 0.00 0.00 0.00 4.26
2039 4608 7.466050 GCAACTGATAGAGGAATAACGGAAAAG 60.466 40.741 0.00 0.00 0.00 2.27
2067 4636 0.105142 TATCCTCCCTTCCTTCCCGG 60.105 60.000 0.00 0.00 0.00 5.73
2095 4664 1.134551 GGGATGCAGAGGTGAAGAGAC 60.135 57.143 0.00 0.00 0.00 3.36
2098 4667 0.615331 GTGGGATGCAGAGGTGAAGA 59.385 55.000 0.00 0.00 0.00 2.87
2106 4675 1.383409 TGCAATGGTGGGATGCAGA 59.617 52.632 0.00 0.00 44.52 4.26
2126 4695 6.150976 CACTCAACAATTGCCCTTAACTATCA 59.849 38.462 5.05 0.00 0.00 2.15
2134 4703 1.963515 GACCACTCAACAATTGCCCTT 59.036 47.619 5.05 0.00 0.00 3.95
2239 4808 2.157989 GGGGATAATGAGGGACCCTAGT 60.158 54.545 14.87 1.50 40.31 2.57
2244 4813 0.977395 CTCGGGGATAATGAGGGACC 59.023 60.000 0.00 0.00 0.00 4.46
2267 4836 8.790718 TGTCTCTATGTCTAAGTAAAACTCGTT 58.209 33.333 0.00 0.00 0.00 3.85
2270 4839 9.909644 TGTTGTCTCTATGTCTAAGTAAAACTC 57.090 33.333 0.00 0.00 0.00 3.01
2280 4849 7.881775 TCTATGCTTGTTGTCTCTATGTCTA 57.118 36.000 0.00 0.00 0.00 2.59
2295 4864 4.763793 CCATGATTACCCCTTCTATGCTTG 59.236 45.833 0.00 0.00 0.00 4.01
2328 4897 2.050144 TCATTGGCTCCCCTCTATCAC 58.950 52.381 0.00 0.00 0.00 3.06
2336 4905 2.599408 ATCATCATCATTGGCTCCCC 57.401 50.000 0.00 0.00 0.00 4.81
2337 4906 3.015327 GCTATCATCATCATTGGCTCCC 58.985 50.000 0.00 0.00 0.00 4.30
2338 4907 2.676839 CGCTATCATCATCATTGGCTCC 59.323 50.000 0.00 0.00 0.00 4.70
2339 4908 2.676839 CCGCTATCATCATCATTGGCTC 59.323 50.000 0.00 0.00 0.00 4.70
2340 4909 2.039480 ACCGCTATCATCATCATTGGCT 59.961 45.455 0.00 0.00 0.00 4.75
2341 4910 2.430465 ACCGCTATCATCATCATTGGC 58.570 47.619 0.00 0.00 0.00 4.52
2342 4911 4.067192 TCAACCGCTATCATCATCATTGG 58.933 43.478 0.00 0.00 0.00 3.16
2343 4912 5.180680 ACATCAACCGCTATCATCATCATTG 59.819 40.000 0.00 0.00 0.00 2.82
2344 4913 5.311265 ACATCAACCGCTATCATCATCATT 58.689 37.500 0.00 0.00 0.00 2.57
2345 4914 4.903054 ACATCAACCGCTATCATCATCAT 58.097 39.130 0.00 0.00 0.00 2.45
2346 4915 4.341366 ACATCAACCGCTATCATCATCA 57.659 40.909 0.00 0.00 0.00 3.07
2347 4916 4.751600 TCAACATCAACCGCTATCATCATC 59.248 41.667 0.00 0.00 0.00 2.92
2348 4917 4.707105 TCAACATCAACCGCTATCATCAT 58.293 39.130 0.00 0.00 0.00 2.45
2349 4918 4.135747 TCAACATCAACCGCTATCATCA 57.864 40.909 0.00 0.00 0.00 3.07
2350 4919 4.572389 ACTTCAACATCAACCGCTATCATC 59.428 41.667 0.00 0.00 0.00 2.92
2351 4920 4.517285 ACTTCAACATCAACCGCTATCAT 58.483 39.130 0.00 0.00 0.00 2.45
2352 4921 3.932710 GACTTCAACATCAACCGCTATCA 59.067 43.478 0.00 0.00 0.00 2.15
2353 4922 4.184629 AGACTTCAACATCAACCGCTATC 58.815 43.478 0.00 0.00 0.00 2.08
2354 4923 4.207891 AGACTTCAACATCAACCGCTAT 57.792 40.909 0.00 0.00 0.00 2.97
2355 4924 3.678056 AGACTTCAACATCAACCGCTA 57.322 42.857 0.00 0.00 0.00 4.26
2356 4925 2.550830 AGACTTCAACATCAACCGCT 57.449 45.000 0.00 0.00 0.00 5.52
2357 4926 2.808543 AGAAGACTTCAACATCAACCGC 59.191 45.455 17.34 0.00 0.00 5.68
2358 4927 4.511454 TCAAGAAGACTTCAACATCAACCG 59.489 41.667 17.34 0.00 33.70 4.44
2359 4928 5.278022 GGTCAAGAAGACTTCAACATCAACC 60.278 44.000 17.34 10.06 46.72 3.77
2360 4929 5.296780 TGGTCAAGAAGACTTCAACATCAAC 59.703 40.000 17.34 5.44 46.72 3.18
2361 4930 5.436175 TGGTCAAGAAGACTTCAACATCAA 58.564 37.500 17.34 0.00 46.72 2.57
2362 4931 5.034852 TGGTCAAGAAGACTTCAACATCA 57.965 39.130 17.34 7.12 46.72 3.07
2363 4932 4.453819 CCTGGTCAAGAAGACTTCAACATC 59.546 45.833 17.34 4.79 46.72 3.06
2364 4933 4.141390 ACCTGGTCAAGAAGACTTCAACAT 60.141 41.667 17.34 0.00 46.72 2.71
2365 4934 3.199946 ACCTGGTCAAGAAGACTTCAACA 59.800 43.478 17.34 4.92 46.72 3.33
2366 4935 3.809905 ACCTGGTCAAGAAGACTTCAAC 58.190 45.455 17.34 11.34 46.72 3.18
2367 4936 4.080582 TCAACCTGGTCAAGAAGACTTCAA 60.081 41.667 17.34 0.00 46.72 2.69
2368 4937 3.454447 TCAACCTGGTCAAGAAGACTTCA 59.546 43.478 17.34 0.00 46.72 3.02
2369 4938 4.073293 TCAACCTGGTCAAGAAGACTTC 57.927 45.455 7.14 7.14 46.72 3.01
2370 4939 4.392940 CATCAACCTGGTCAAGAAGACTT 58.607 43.478 0.00 0.00 46.72 3.01
2371 4940 3.244700 CCATCAACCTGGTCAAGAAGACT 60.245 47.826 0.00 0.00 46.72 3.24
2372 4941 3.077359 CCATCAACCTGGTCAAGAAGAC 58.923 50.000 0.00 0.00 46.83 3.01
2373 4942 2.553028 GCCATCAACCTGGTCAAGAAGA 60.553 50.000 0.00 0.00 38.63 2.87
2374 4943 1.815003 GCCATCAACCTGGTCAAGAAG 59.185 52.381 0.00 0.00 38.63 2.85
2375 4944 1.881925 CGCCATCAACCTGGTCAAGAA 60.882 52.381 0.00 0.00 38.63 2.52
2376 4945 0.321564 CGCCATCAACCTGGTCAAGA 60.322 55.000 0.00 0.00 38.63 3.02
2377 4946 0.606401 ACGCCATCAACCTGGTCAAG 60.606 55.000 0.00 0.00 38.63 3.02
2378 4947 0.687920 TACGCCATCAACCTGGTCAA 59.312 50.000 0.00 0.00 38.63 3.18
2379 4948 0.249120 CTACGCCATCAACCTGGTCA 59.751 55.000 0.00 0.00 38.63 4.02
2380 4949 1.090052 GCTACGCCATCAACCTGGTC 61.090 60.000 0.00 0.00 38.63 4.02
2381 4950 1.078426 GCTACGCCATCAACCTGGT 60.078 57.895 0.00 0.00 38.63 4.00
2382 4951 2.173669 CGCTACGCCATCAACCTGG 61.174 63.158 0.00 0.00 39.45 4.45
2383 4952 2.173669 CCGCTACGCCATCAACCTG 61.174 63.158 0.00 0.00 0.00 4.00
2384 4953 2.186903 CCGCTACGCCATCAACCT 59.813 61.111 0.00 0.00 0.00 3.50
2385 4954 1.883084 CTCCGCTACGCCATCAACC 60.883 63.158 0.00 0.00 0.00 3.77
2386 4955 2.526120 GCTCCGCTACGCCATCAAC 61.526 63.158 0.00 0.00 0.00 3.18
2387 4956 2.202878 GCTCCGCTACGCCATCAA 60.203 61.111 0.00 0.00 0.00 2.57
2388 4957 4.221422 GGCTCCGCTACGCCATCA 62.221 66.667 0.00 0.00 45.59 3.07
2392 4961 4.893601 GAAGGGCTCCGCTACGCC 62.894 72.222 0.00 0.00 45.55 5.68
2393 4962 4.893601 GGAAGGGCTCCGCTACGC 62.894 72.222 0.00 0.00 33.37 4.42
2400 4969 0.106469 GGAAAGGATGGAAGGGCTCC 60.106 60.000 0.00 0.00 45.64 4.70
2401 4970 0.106469 GGGAAAGGATGGAAGGGCTC 60.106 60.000 0.00 0.00 0.00 4.70
2402 4971 1.584717 GGGGAAAGGATGGAAGGGCT 61.585 60.000 0.00 0.00 0.00 5.19
2403 4972 1.075970 GGGGAAAGGATGGAAGGGC 60.076 63.158 0.00 0.00 0.00 5.19
2404 4973 1.620818 GGGGGAAAGGATGGAAGGG 59.379 63.158 0.00 0.00 0.00 3.95
2433 5002 3.871594 CGAATAAACCTAGCCTGTGGAAG 59.128 47.826 0.00 0.00 0.00 3.46
2434 5003 3.262405 ACGAATAAACCTAGCCTGTGGAA 59.738 43.478 0.00 0.00 0.00 3.53
2435 5004 2.835764 ACGAATAAACCTAGCCTGTGGA 59.164 45.455 0.00 0.00 0.00 4.02
2436 5005 3.261981 ACGAATAAACCTAGCCTGTGG 57.738 47.619 0.00 0.00 0.00 4.17
2437 5006 5.390613 CAAAACGAATAAACCTAGCCTGTG 58.609 41.667 0.00 0.00 0.00 3.66
2438 5007 4.457949 CCAAAACGAATAAACCTAGCCTGT 59.542 41.667 0.00 0.00 0.00 4.00
2439 5008 4.457949 ACCAAAACGAATAAACCTAGCCTG 59.542 41.667 0.00 0.00 0.00 4.85
2440 5009 4.457949 CACCAAAACGAATAAACCTAGCCT 59.542 41.667 0.00 0.00 0.00 4.58
2441 5010 4.380128 CCACCAAAACGAATAAACCTAGCC 60.380 45.833 0.00 0.00 0.00 3.93
2442 5011 4.456566 TCCACCAAAACGAATAAACCTAGC 59.543 41.667 0.00 0.00 0.00 3.42
2443 5012 5.704053 ACTCCACCAAAACGAATAAACCTAG 59.296 40.000 0.00 0.00 0.00 3.02
2444 5013 5.623169 ACTCCACCAAAACGAATAAACCTA 58.377 37.500 0.00 0.00 0.00 3.08
2445 5014 4.466827 ACTCCACCAAAACGAATAAACCT 58.533 39.130 0.00 0.00 0.00 3.50
2446 5015 4.841443 ACTCCACCAAAACGAATAAACC 57.159 40.909 0.00 0.00 0.00 3.27
2447 5016 6.416750 CAGAAACTCCACCAAAACGAATAAAC 59.583 38.462 0.00 0.00 0.00 2.01
2448 5017 6.319152 TCAGAAACTCCACCAAAACGAATAAA 59.681 34.615 0.00 0.00 0.00 1.40
2449 5018 5.823570 TCAGAAACTCCACCAAAACGAATAA 59.176 36.000 0.00 0.00 0.00 1.40
2450 5019 5.369833 TCAGAAACTCCACCAAAACGAATA 58.630 37.500 0.00 0.00 0.00 1.75
2451 5020 4.204012 TCAGAAACTCCACCAAAACGAAT 58.796 39.130 0.00 0.00 0.00 3.34
2452 5021 3.611970 TCAGAAACTCCACCAAAACGAA 58.388 40.909 0.00 0.00 0.00 3.85
2453 5022 3.269538 TCAGAAACTCCACCAAAACGA 57.730 42.857 0.00 0.00 0.00 3.85
2454 5023 3.815401 AGATCAGAAACTCCACCAAAACG 59.185 43.478 0.00 0.00 0.00 3.60
2455 5024 5.067805 ACAAGATCAGAAACTCCACCAAAAC 59.932 40.000 0.00 0.00 0.00 2.43
2456 5025 5.067674 CACAAGATCAGAAACTCCACCAAAA 59.932 40.000 0.00 0.00 0.00 2.44
2457 5026 4.580167 CACAAGATCAGAAACTCCACCAAA 59.420 41.667 0.00 0.00 0.00 3.28
2458 5027 4.136796 CACAAGATCAGAAACTCCACCAA 58.863 43.478 0.00 0.00 0.00 3.67
2459 5028 3.136443 ACACAAGATCAGAAACTCCACCA 59.864 43.478 0.00 0.00 0.00 4.17
2460 5029 3.744660 ACACAAGATCAGAAACTCCACC 58.255 45.455 0.00 0.00 0.00 4.61
2461 5030 4.636249 AGACACAAGATCAGAAACTCCAC 58.364 43.478 0.00 0.00 0.00 4.02
2462 5031 4.590647 AGAGACACAAGATCAGAAACTCCA 59.409 41.667 0.00 0.00 0.00 3.86
2463 5032 4.928615 CAGAGACACAAGATCAGAAACTCC 59.071 45.833 0.00 0.00 0.00 3.85
2464 5033 5.537188 ACAGAGACACAAGATCAGAAACTC 58.463 41.667 0.00 0.00 0.00 3.01
2465 5034 5.543507 ACAGAGACACAAGATCAGAAACT 57.456 39.130 0.00 0.00 0.00 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.