Multiple sequence alignment - TraesCS2A01G430000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G430000 chr2A 100.000 1917 0 0 1 1917 683230408 683232324 0.000000e+00 3541.0
1 TraesCS2A01G430000 chr2A 100.000 667 0 0 2039 2705 683232446 683233112 0.000000e+00 1232.0
2 TraesCS2A01G430000 chr2A 95.540 426 10 7 2281 2705 680073276 680072859 0.000000e+00 673.0
3 TraesCS2A01G430000 chr2A 95.487 421 14 1 2285 2705 577325838 577325423 0.000000e+00 667.0
4 TraesCS2A01G430000 chr2A 95.261 422 15 2 2283 2704 214521209 214521625 0.000000e+00 664.0
5 TraesCS2A01G430000 chr2A 90.196 153 12 3 602 753 584149487 584149637 2.120000e-46 196.0
6 TraesCS2A01G430000 chr2A 88.889 108 11 1 751 857 683232280 683232173 6.080000e-27 132.0
7 TraesCS2A01G430000 chr2A 84.810 79 12 0 748 826 776390998 776391076 2.230000e-11 80.5
8 TraesCS2A01G430000 chr2D 88.550 1345 96 15 602 1917 539518538 539519853 0.000000e+00 1578.0
9 TraesCS2A01G430000 chr2D 89.474 152 15 1 602 753 620298143 620298293 9.890000e-45 191.0
10 TraesCS2A01G430000 chr2D 87.333 150 19 0 1694 1843 60776321 60776172 3.580000e-39 172.0
11 TraesCS2A01G430000 chr3D 90.841 535 41 1 2 536 505321776 505322302 0.000000e+00 710.0
12 TraesCS2A01G430000 chr3D 88.411 535 54 1 2 536 513937145 513937671 2.940000e-179 638.0
13 TraesCS2A01G430000 chr3D 90.728 151 14 0 1729 1879 100112639 100112489 4.570000e-48 202.0
14 TraesCS2A01G430000 chr3D 83.243 185 31 0 1696 1880 517752050 517752234 1.290000e-38 171.0
15 TraesCS2A01G430000 chr3D 83.152 184 30 1 1696 1879 61678485 61678667 1.670000e-37 167.0
16 TraesCS2A01G430000 chr3D 87.037 108 13 1 751 857 100112495 100112602 1.320000e-23 121.0
17 TraesCS2A01G430000 chr3D 80.620 129 20 5 748 875 499593590 499593714 7.970000e-16 95.3
18 TraesCS2A01G430000 chr3D 100.000 40 0 0 2245 2284 79598204 79598165 1.040000e-09 75.0
19 TraesCS2A01G430000 chr6A 90.467 535 43 1 2 536 3681661 3681135 0.000000e+00 699.0
20 TraesCS2A01G430000 chr6A 95.272 423 13 3 2282 2704 88547239 88547654 0.000000e+00 664.0
21 TraesCS2A01G430000 chr7A 95.952 420 11 2 2285 2704 108330591 108331004 0.000000e+00 676.0
22 TraesCS2A01G430000 chr7A 95.487 421 13 2 2285 2705 198222437 198222851 0.000000e+00 667.0
23 TraesCS2A01G430000 chr7A 88.667 150 13 3 602 750 610942903 610942757 2.140000e-41 180.0
24 TraesCS2A01G430000 chr7A 87.500 152 18 1 602 753 288053379 288053529 9.960000e-40 174.0
25 TraesCS2A01G430000 chr4A 95.283 424 11 6 2284 2705 28967146 28966730 0.000000e+00 664.0
26 TraesCS2A01G430000 chr4A 93.377 151 10 0 1729 1879 725374337 725374187 9.750000e-55 224.0
27 TraesCS2A01G430000 chr1A 95.249 421 14 3 2285 2705 146221575 146221161 0.000000e+00 662.0
28 TraesCS2A01G430000 chr1A 95.249 421 14 3 2285 2705 483825499 483825085 0.000000e+00 662.0
29 TraesCS2A01G430000 chr1A 86.550 171 20 3 602 771 586291311 586291479 4.600000e-43 185.0
30 TraesCS2A01G430000 chr4B 85.607 535 68 2 2 536 70728159 70728684 1.090000e-153 553.0
31 TraesCS2A01G430000 chr3B 76.364 495 107 4 2 494 505046797 505047283 9.610000e-65 257.0
32 TraesCS2A01G430000 chr3B 81.132 106 19 1 751 855 168115766 168115661 1.730000e-12 84.2
33 TraesCS2A01G430000 chr4D 83.871 248 21 14 751 992 18478595 18478361 4.530000e-53 219.0
34 TraesCS2A01G430000 chr4D 83.152 184 31 0 1696 1879 18477739 18477556 4.630000e-38 169.0
35 TraesCS2A01G430000 chr5D 89.474 152 13 2 602 752 494223322 494223471 3.560000e-44 189.0
36 TraesCS2A01G430000 chr2B 88.158 152 17 1 602 753 796458579 796458729 2.140000e-41 180.0
37 TraesCS2A01G430000 chr2B 82.390 159 24 4 1717 1874 703665421 703665266 4.700000e-28 135.0
38 TraesCS2A01G430000 chr2B 82.692 104 18 0 751 854 637927971 637928074 2.870000e-15 93.5
39 TraesCS2A01G430000 chr5A 87.500 152 18 1 602 753 75022545 75022695 9.960000e-40 174.0
40 TraesCS2A01G430000 chr7D 84.444 135 19 2 1746 1879 469523482 469523615 6.080000e-27 132.0
41 TraesCS2A01G430000 chr3A 80.916 131 18 7 748 875 375744312 375744186 2.220000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G430000 chr2A 683230408 683233112 2704 False 2386.5 3541 100.000 1 2705 2 chr2A.!!$F4 2704
1 TraesCS2A01G430000 chr2D 539518538 539519853 1315 False 1578.0 1578 88.550 602 1917 1 chr2D.!!$F1 1315
2 TraesCS2A01G430000 chr3D 505321776 505322302 526 False 710.0 710 90.841 2 536 1 chr3D.!!$F4 534
3 TraesCS2A01G430000 chr3D 513937145 513937671 526 False 638.0 638 88.411 2 536 1 chr3D.!!$F5 534
4 TraesCS2A01G430000 chr6A 3681135 3681661 526 True 699.0 699 90.467 2 536 1 chr6A.!!$R1 534
5 TraesCS2A01G430000 chr4B 70728159 70728684 525 False 553.0 553 85.607 2 536 1 chr4B.!!$F1 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
901 905 0.252012 CCAAAATACCCCTGCCCACA 60.252 55.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2214 2244 0.03601 CCAAGACATGTCGGGCTTCT 60.036 55.0 21.54 1.64 34.09 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 3.566322 ACATTCCAAAAATCACCGAACGA 59.434 39.130 0.00 0.00 0.00 3.85
73 74 6.260271 CGAGAAATACCTTCCTTTCAATACCC 59.740 42.308 0.00 0.00 34.52 3.69
84 85 2.032634 CAATACCCGCGCACACAGT 61.033 57.895 8.75 0.00 0.00 3.55
91 92 2.669569 GCGCACACAGTGACCCAT 60.670 61.111 7.81 0.00 35.23 4.00
107 108 4.080413 TGACCCATGATCAGTAAGCAATCA 60.080 41.667 0.09 0.00 34.17 2.57
141 142 2.026641 CCCAACATCGCCTGATTGAAT 58.973 47.619 0.00 0.00 30.49 2.57
190 191 2.093447 CCAAGGCATTTAGGAGTCGAGT 60.093 50.000 0.00 0.00 0.00 4.18
205 206 1.281867 TCGAGTGCCAATCCCAAGAAT 59.718 47.619 0.00 0.00 0.00 2.40
208 209 0.896923 GTGCCAATCCCAAGAATGCA 59.103 50.000 0.00 0.00 0.00 3.96
246 247 2.971598 ATCTTCACGCCCCCACCAG 61.972 63.158 0.00 0.00 0.00 4.00
247 248 4.722700 CTTCACGCCCCCACCAGG 62.723 72.222 0.00 0.00 0.00 4.45
292 293 3.318275 TGTCAAGACTTCTCGCAAGTAGT 59.682 43.478 1.53 0.00 39.48 2.73
315 316 1.403679 CCGGCAAACAGAAACAACTCA 59.596 47.619 0.00 0.00 0.00 3.41
348 349 4.207891 GGAATAGCCTGAGTCTTGAACA 57.792 45.455 0.00 0.00 0.00 3.18
375 376 3.845781 AAGTTTCAGTTCCTGCTCTCA 57.154 42.857 0.00 0.00 0.00 3.27
422 423 1.717032 TATTCTGCCACGCCCTATCT 58.283 50.000 0.00 0.00 0.00 1.98
441 442 8.443953 CCTATCTGGGAGAAATTTGAAAGTAG 57.556 38.462 0.00 0.00 0.00 2.57
448 449 6.040504 GGGAGAAATTTGAAAGTAGTTGTGGT 59.959 38.462 0.00 0.00 0.00 4.16
496 497 5.075493 ACCCAGATATGAATCATGAAAGGC 58.925 41.667 5.91 0.00 34.28 4.35
498 499 4.379186 CCAGATATGAATCATGAAAGGCGC 60.379 45.833 5.91 0.00 34.28 6.53
500 501 1.766494 ATGAATCATGAAAGGCGCCA 58.234 45.000 31.54 8.23 0.00 5.69
502 503 1.677576 TGAATCATGAAAGGCGCCATC 59.322 47.619 31.54 25.75 0.00 3.51
550 551 1.896694 TTTTTGCCCATCCATCCGC 59.103 52.632 0.00 0.00 0.00 5.54
551 552 1.612395 TTTTTGCCCATCCATCCGCC 61.612 55.000 0.00 0.00 0.00 6.13
552 553 2.512986 TTTTGCCCATCCATCCGCCT 62.513 55.000 0.00 0.00 0.00 5.52
553 554 2.909457 TTTGCCCATCCATCCGCCTC 62.909 60.000 0.00 0.00 0.00 4.70
554 555 4.650377 GCCCATCCATCCGCCTCC 62.650 72.222 0.00 0.00 0.00 4.30
555 556 3.170672 CCCATCCATCCGCCTCCA 61.171 66.667 0.00 0.00 0.00 3.86
556 557 2.429058 CCATCCATCCGCCTCCAG 59.571 66.667 0.00 0.00 0.00 3.86
557 558 2.142761 CCATCCATCCGCCTCCAGA 61.143 63.158 0.00 0.00 0.00 3.86
558 559 1.370437 CATCCATCCGCCTCCAGAG 59.630 63.158 0.00 0.00 0.00 3.35
559 560 2.515071 ATCCATCCGCCTCCAGAGC 61.515 63.158 0.00 0.00 0.00 4.09
560 561 3.473647 CCATCCGCCTCCAGAGCA 61.474 66.667 0.00 0.00 0.00 4.26
561 562 2.108566 CATCCGCCTCCAGAGCAG 59.891 66.667 0.00 0.00 0.00 4.24
562 563 3.859414 ATCCGCCTCCAGAGCAGC 61.859 66.667 0.00 0.00 0.00 5.25
593 594 3.231298 GGGGGATCCTCAGGTTCG 58.769 66.667 15.23 0.00 0.00 3.95
594 595 2.506472 GGGGATCCTCAGGTTCGC 59.494 66.667 12.58 9.89 34.80 4.70
595 596 2.506472 GGGATCCTCAGGTTCGCC 59.494 66.667 12.58 1.37 31.05 5.54
596 597 2.107141 GGATCCTCAGGTTCGCCG 59.893 66.667 3.84 0.00 43.66 6.46
597 598 2.107141 GATCCTCAGGTTCGCCGG 59.893 66.667 0.00 0.00 43.66 6.13
598 599 4.162690 ATCCTCAGGTTCGCCGGC 62.163 66.667 19.07 19.07 43.66 6.13
631 632 8.385858 CACATCTAAGTGACACAATCAAGTATG 58.614 37.037 8.59 3.41 42.05 2.39
632 633 7.550551 ACATCTAAGTGACACAATCAAGTATGG 59.449 37.037 8.59 0.00 39.72 2.74
634 635 7.851228 TCTAAGTGACACAATCAAGTATGGAT 58.149 34.615 8.59 0.00 39.72 3.41
650 651 9.358872 CAAGTATGGATAGAAAAAGAAAAAGGC 57.641 33.333 0.00 0.00 0.00 4.35
653 654 9.705290 GTATGGATAGAAAAAGAAAAAGGCAAA 57.295 29.630 0.00 0.00 0.00 3.68
678 681 2.024176 AATTCCCACGTGAATCTCCG 57.976 50.000 19.30 0.00 33.91 4.63
679 682 0.902531 ATTCCCACGTGAATCTCCGT 59.097 50.000 19.30 0.00 37.90 4.69
685 688 3.211803 CACGTGAATCTCCGTGTAAGA 57.788 47.619 10.90 0.00 46.87 2.10
687 690 3.791887 CACGTGAATCTCCGTGTAAGATC 59.208 47.826 10.90 0.00 46.87 2.75
689 692 4.082408 ACGTGAATCTCCGTGTAAGATCAA 60.082 41.667 0.00 0.00 35.69 2.57
690 693 5.043903 CGTGAATCTCCGTGTAAGATCAAT 58.956 41.667 0.00 0.00 32.29 2.57
691 694 5.051441 CGTGAATCTCCGTGTAAGATCAATG 60.051 44.000 0.00 0.00 32.29 2.82
692 695 5.812642 GTGAATCTCCGTGTAAGATCAATGT 59.187 40.000 0.00 0.00 32.29 2.71
699 702 6.873997 TCCGTGTAAGATCAATGTCATAAGT 58.126 36.000 0.00 0.00 0.00 2.24
722 725 6.708054 AGTCTTAGATGTGCAATACTTATGGC 59.292 38.462 0.00 0.00 33.16 4.40
755 758 7.981225 AGATGTGTTTTAGCAAAAGTGTTTGAT 59.019 29.630 3.44 0.00 45.99 2.57
812 815 9.691362 AATTTGCCACTAGTTACTTTGTAATTG 57.309 29.630 0.00 0.00 0.00 2.32
855 859 6.043127 AGTTTGGACTTTGATATTTTGCCCTT 59.957 34.615 0.00 0.00 29.87 3.95
864 868 4.279671 TGATATTTTGCCCTTTGTCACGTT 59.720 37.500 0.00 0.00 0.00 3.99
872 876 0.661020 CTTTGTCACGTTGGGTCCAC 59.339 55.000 0.00 0.00 0.00 4.02
885 889 4.659529 TGGGTCCACATACAATTACCAA 57.340 40.909 0.00 0.00 0.00 3.67
900 904 0.252057 ACCAAAATACCCCTGCCCAC 60.252 55.000 0.00 0.00 0.00 4.61
901 905 0.252012 CCAAAATACCCCTGCCCACA 60.252 55.000 0.00 0.00 0.00 4.17
910 914 1.535204 CCCTGCCCACATTTGACCAC 61.535 60.000 0.00 0.00 0.00 4.16
913 917 0.466372 TGCCCACATTTGACCACGAA 60.466 50.000 0.00 0.00 0.00 3.85
931 935 4.567385 CAGGAGAGCGCGAGAGGC 62.567 72.222 12.10 0.00 38.69 4.70
942 946 1.977293 GCGAGAGGCTCATCCCCTTT 61.977 60.000 18.26 0.00 39.11 3.11
948 952 0.462759 GGCTCATCCCCTTTGTCTCG 60.463 60.000 0.00 0.00 0.00 4.04
952 956 1.079127 ATCCCCTTTGTCTCGCACG 60.079 57.895 0.00 0.00 0.00 5.34
970 974 1.227002 GGGTCGCTCGTTCTCATCC 60.227 63.158 0.00 0.00 0.00 3.51
1001 1005 0.250513 GGGCTCAACGAACAGGAGAT 59.749 55.000 0.00 0.00 0.00 2.75
1008 1012 2.892425 GAACAGGAGATGCGGCGG 60.892 66.667 9.78 0.00 0.00 6.13
1070 1074 2.089349 GGCTCGAGCAACGTCACTC 61.089 63.158 36.27 13.82 44.36 3.51
1073 1077 2.142357 CTCGAGCAACGTCACTCCCA 62.142 60.000 0.00 0.00 43.13 4.37
1085 1089 0.111253 CACTCCCAAGCCTTGAAGGT 59.889 55.000 13.58 0.00 37.80 3.50
1093 1097 0.832135 AGCCTTGAAGGTCGTCCTCA 60.832 55.000 13.58 0.00 44.35 3.86
1094 1098 0.670854 GCCTTGAAGGTCGTCCTCAC 60.671 60.000 13.58 0.51 44.35 3.51
1106 1110 1.305297 TCCTCACTGTCGGGAGCAT 60.305 57.895 0.00 0.00 0.00 3.79
1160 1164 3.785859 GCTGAGGCGTGGATGGGA 61.786 66.667 0.00 0.00 0.00 4.37
1166 1170 3.211963 GCGTGGATGGGATGGTGC 61.212 66.667 0.00 0.00 0.00 5.01
1193 1197 1.336056 GCCGTGGTATAGCACTCTAGC 60.336 57.143 27.39 20.90 0.00 3.42
1225 1229 3.807538 GTCGTGCTCGAGCGGGTA 61.808 66.667 30.75 12.13 46.96 3.69
1227 1231 2.579787 CGTGCTCGAGCGGGTAAG 60.580 66.667 30.75 13.00 45.83 2.34
1232 1236 1.382692 GCTCGAGCGGGTAAGGTAGT 61.383 60.000 23.61 0.00 0.00 2.73
1254 1258 3.869272 GAAGCACCATGGCGCTCG 61.869 66.667 26.87 4.60 37.54 5.03
1274 1278 3.227276 CATCCGCTACTCCCCGCT 61.227 66.667 0.00 0.00 0.00 5.52
1275 1279 3.227276 ATCCGCTACTCCCCGCTG 61.227 66.667 0.00 0.00 0.00 5.18
1330 1334 1.355971 GTTAGAAGCAATCGCGGACA 58.644 50.000 6.13 0.00 45.49 4.02
1355 1359 2.562298 GGATCTCGAGCTCATCCTTGAT 59.438 50.000 19.57 10.62 34.31 2.57
1363 1367 0.841961 CTCATCCTTGATGGGAGGCA 59.158 55.000 0.00 0.00 42.67 4.75
1369 1373 1.133699 CCTTGATGGGAGGCATAGCAA 60.134 52.381 0.00 0.00 0.00 3.91
1385 1389 2.093106 AGCAAAGGAGATCGTACTCGT 58.907 47.619 0.00 0.00 37.74 4.18
1391 1395 0.733729 GAGATCGTACTCGTGCAGGT 59.266 55.000 6.26 0.00 38.33 4.00
1405 1409 1.827399 GCAGGTGGGAGAAAGGACGA 61.827 60.000 0.00 0.00 0.00 4.20
1409 1413 0.680061 GTGGGAGAAAGGACGACACT 59.320 55.000 0.00 0.00 0.00 3.55
1410 1414 1.891150 GTGGGAGAAAGGACGACACTA 59.109 52.381 0.00 0.00 0.00 2.74
1413 1417 1.544691 GGAGAAAGGACGACACTAGCA 59.455 52.381 0.00 0.00 0.00 3.49
1414 1418 2.029290 GGAGAAAGGACGACACTAGCAA 60.029 50.000 0.00 0.00 0.00 3.91
1415 1419 3.246619 GAGAAAGGACGACACTAGCAAG 58.753 50.000 0.00 0.00 0.00 4.01
1416 1420 2.028930 AGAAAGGACGACACTAGCAAGG 60.029 50.000 0.00 0.00 0.00 3.61
1417 1421 1.629043 AAGGACGACACTAGCAAGGA 58.371 50.000 0.00 0.00 0.00 3.36
1418 1422 0.889306 AGGACGACACTAGCAAGGAC 59.111 55.000 0.00 0.00 0.00 3.85
1419 1423 0.108756 GGACGACACTAGCAAGGACC 60.109 60.000 0.00 0.00 0.00 4.46
1420 1424 0.456312 GACGACACTAGCAAGGACCG 60.456 60.000 0.00 0.00 0.00 4.79
1421 1425 0.892358 ACGACACTAGCAAGGACCGA 60.892 55.000 0.00 0.00 0.00 4.69
1422 1426 0.179161 CGACACTAGCAAGGACCGAG 60.179 60.000 0.00 0.00 0.00 4.63
1423 1427 1.174783 GACACTAGCAAGGACCGAGA 58.825 55.000 0.00 0.00 0.00 4.04
1424 1428 0.889306 ACACTAGCAAGGACCGAGAC 59.111 55.000 0.00 0.00 0.00 3.36
1425 1429 0.179161 CACTAGCAAGGACCGAGACG 60.179 60.000 0.00 0.00 0.00 4.18
1499 1503 2.496817 GCTCGAAGCGGAGGATGT 59.503 61.111 4.95 0.00 34.56 3.06
1501 1505 0.318275 GCTCGAAGCGGAGGATGTAG 60.318 60.000 4.95 0.00 34.56 2.74
1509 1513 1.664873 CGGAGGATGTAGAGTCGTCA 58.335 55.000 0.00 0.00 33.39 4.35
1510 1514 1.331138 CGGAGGATGTAGAGTCGTCAC 59.669 57.143 0.00 0.00 33.39 3.67
1511 1515 1.331138 GGAGGATGTAGAGTCGTCACG 59.669 57.143 0.00 0.00 33.39 4.35
1512 1516 1.331138 GAGGATGTAGAGTCGTCACGG 59.669 57.143 0.00 0.00 32.35 4.94
1513 1517 1.065636 AGGATGTAGAGTCGTCACGGA 60.066 52.381 0.00 0.00 0.00 4.69
1514 1518 1.331138 GGATGTAGAGTCGTCACGGAG 59.669 57.143 0.00 0.00 0.00 4.63
1515 1519 1.331138 GATGTAGAGTCGTCACGGAGG 59.669 57.143 0.00 0.00 0.00 4.30
1516 1520 1.303799 TGTAGAGTCGTCACGGAGGC 61.304 60.000 0.00 0.00 0.00 4.70
1517 1521 2.104859 TAGAGTCGTCACGGAGGCG 61.105 63.158 0.00 0.00 0.00 5.52
1541 1545 2.260434 GGAGTCGCGGCTACACAA 59.740 61.111 20.29 0.00 0.00 3.33
1602 1632 0.567968 GAGATGACGACATTCACGCG 59.432 55.000 3.53 3.53 36.82 6.01
1603 1633 0.802222 AGATGACGACATTCACGCGG 60.802 55.000 12.47 0.00 36.82 6.46
1633 1663 3.737172 GCGCTGCCGTGGTTCAAT 61.737 61.111 0.00 0.00 36.67 2.57
1649 1679 1.852157 AATGGTGGAGGAGGGCACA 60.852 57.895 0.00 0.00 0.00 4.57
1651 1681 1.856539 ATGGTGGAGGAGGGCACAAG 61.857 60.000 0.00 0.00 0.00 3.16
1652 1682 2.352805 GTGGAGGAGGGCACAAGG 59.647 66.667 0.00 0.00 0.00 3.61
1653 1683 2.935481 TGGAGGAGGGCACAAGGG 60.935 66.667 0.00 0.00 0.00 3.95
1684 1714 3.996363 CTGGTTTATTTTCCAGCCAAAGC 59.004 43.478 0.00 0.00 43.45 3.51
1740 1770 9.661187 GATTTGTGCATACATTTCATCTAGAAG 57.339 33.333 0.00 0.00 36.53 2.85
1744 1774 7.066163 TGTGCATACATTTCATCTAGAAGTTGG 59.934 37.037 0.00 0.00 37.57 3.77
1753 1783 9.745018 ATTTCATCTAGAAGTTGGAAAGATTGA 57.255 29.630 0.00 0.00 37.57 2.57
1779 1809 9.777297 ATTTTGTGTTATAAAGTGGCAAAAGAT 57.223 25.926 0.00 0.00 37.62 2.40
1807 1837 5.046950 AGTCCAAACTAAGTTGTGGCAAAAA 60.047 36.000 0.00 0.00 32.59 1.94
1889 1919 1.136110 CAAATTCCCCGGGGATTTTCG 59.864 52.381 40.89 33.14 42.46 3.46
2061 2091 3.726004 CCCCCATTCCCTTTTGCC 58.274 61.111 0.00 0.00 0.00 4.52
2062 2092 1.995066 CCCCCATTCCCTTTTGCCC 60.995 63.158 0.00 0.00 0.00 5.36
2063 2093 1.080907 CCCCATTCCCTTTTGCCCT 59.919 57.895 0.00 0.00 0.00 5.19
2064 2094 1.266867 CCCCATTCCCTTTTGCCCTG 61.267 60.000 0.00 0.00 0.00 4.45
2065 2095 1.598517 CCATTCCCTTTTGCCCTGC 59.401 57.895 0.00 0.00 0.00 4.85
2066 2096 0.906282 CCATTCCCTTTTGCCCTGCT 60.906 55.000 0.00 0.00 0.00 4.24
2067 2097 1.619432 CCATTCCCTTTTGCCCTGCTA 60.619 52.381 0.00 0.00 0.00 3.49
2068 2098 1.478105 CATTCCCTTTTGCCCTGCTAC 59.522 52.381 0.00 0.00 0.00 3.58
2069 2099 0.480690 TTCCCTTTTGCCCTGCTACA 59.519 50.000 0.00 0.00 0.00 2.74
2070 2100 0.038166 TCCCTTTTGCCCTGCTACAG 59.962 55.000 0.00 0.00 0.00 2.74
2081 2111 2.580867 GCTACAGGAGCGCGTGAG 60.581 66.667 17.13 10.38 42.62 3.51
2082 2112 2.103143 CTACAGGAGCGCGTGAGG 59.897 66.667 17.13 5.14 34.18 3.86
2083 2113 2.360726 TACAGGAGCGCGTGAGGA 60.361 61.111 17.13 0.00 34.18 3.71
2084 2114 2.329678 CTACAGGAGCGCGTGAGGAG 62.330 65.000 17.13 7.03 34.18 3.69
2085 2115 2.814913 TACAGGAGCGCGTGAGGAGA 62.815 60.000 17.13 0.00 34.18 3.71
2086 2116 3.444805 AGGAGCGCGTGAGGAGAC 61.445 66.667 8.43 0.00 0.00 3.36
2087 2117 4.500116 GGAGCGCGTGAGGAGACC 62.500 72.222 8.43 0.00 0.00 3.85
2088 2118 4.500116 GAGCGCGTGAGGAGACCC 62.500 72.222 8.43 0.00 0.00 4.46
2091 2121 3.680786 CGCGTGAGGAGACCCACA 61.681 66.667 0.00 0.00 33.13 4.17
2092 2122 2.262915 GCGTGAGGAGACCCACAG 59.737 66.667 0.00 0.00 33.66 3.66
2093 2123 2.973899 CGTGAGGAGACCCACAGG 59.026 66.667 0.00 0.00 33.66 4.00
2112 2142 2.959707 AGGTCTACCTGGCTATCTTTCG 59.040 50.000 0.00 0.00 46.55 3.46
2113 2143 2.036089 GGTCTACCTGGCTATCTTTCGG 59.964 54.545 0.00 0.00 0.00 4.30
2114 2144 2.036089 GTCTACCTGGCTATCTTTCGGG 59.964 54.545 0.00 0.00 0.00 5.14
2115 2145 2.040178 CTACCTGGCTATCTTTCGGGT 58.960 52.381 0.00 0.00 42.30 5.28
2116 2146 0.831307 ACCTGGCTATCTTTCGGGTC 59.169 55.000 0.00 0.00 35.40 4.46
2117 2147 0.249489 CCTGGCTATCTTTCGGGTCG 60.249 60.000 0.00 0.00 0.00 4.79
2118 2148 0.249489 CTGGCTATCTTTCGGGTCGG 60.249 60.000 0.00 0.00 0.00 4.79
2119 2149 1.069258 GGCTATCTTTCGGGTCGGG 59.931 63.158 0.00 0.00 0.00 5.14
2120 2150 1.594564 GCTATCTTTCGGGTCGGGC 60.595 63.158 0.00 0.00 0.00 6.13
2121 2151 1.820581 CTATCTTTCGGGTCGGGCA 59.179 57.895 0.00 0.00 0.00 5.36
2122 2152 0.393077 CTATCTTTCGGGTCGGGCAT 59.607 55.000 0.00 0.00 0.00 4.40
2123 2153 0.105964 TATCTTTCGGGTCGGGCATG 59.894 55.000 0.00 0.00 0.00 4.06
2124 2154 3.508840 CTTTCGGGTCGGGCATGC 61.509 66.667 9.90 9.90 0.00 4.06
2129 2159 3.451894 GGGTCGGGCATGCCAAAG 61.452 66.667 36.56 25.93 37.98 2.77
2130 2160 4.133796 GGTCGGGCATGCCAAAGC 62.134 66.667 36.56 27.39 37.98 3.51
2135 2165 4.133796 GGCATGCCAAAGCCCGAC 62.134 66.667 32.08 0.00 45.18 4.79
2136 2166 3.372730 GCATGCCAAAGCCCGACA 61.373 61.111 6.36 0.00 38.69 4.35
2137 2167 2.568090 CATGCCAAAGCCCGACAC 59.432 61.111 0.00 0.00 38.69 3.67
2138 2168 2.115052 ATGCCAAAGCCCGACACA 59.885 55.556 0.00 0.00 38.69 3.72
2139 2169 1.973281 ATGCCAAAGCCCGACACAG 60.973 57.895 0.00 0.00 38.69 3.66
2140 2170 2.281484 GCCAAAGCCCGACACAGA 60.281 61.111 0.00 0.00 0.00 3.41
2141 2171 1.896660 GCCAAAGCCCGACACAGAA 60.897 57.895 0.00 0.00 0.00 3.02
2142 2172 1.452145 GCCAAAGCCCGACACAGAAA 61.452 55.000 0.00 0.00 0.00 2.52
2143 2173 1.028905 CCAAAGCCCGACACAGAAAA 58.971 50.000 0.00 0.00 0.00 2.29
2144 2174 1.269051 CCAAAGCCCGACACAGAAAAC 60.269 52.381 0.00 0.00 0.00 2.43
2145 2175 1.029681 AAAGCCCGACACAGAAAACC 58.970 50.000 0.00 0.00 0.00 3.27
2146 2176 0.182775 AAGCCCGACACAGAAAACCT 59.817 50.000 0.00 0.00 0.00 3.50
2156 2186 1.177401 CAGAAAACCTGGGCCTAAGC 58.823 55.000 4.53 0.00 39.23 3.09
2190 2220 1.039856 CCATCGGGCCTAAAATTGGG 58.960 55.000 0.84 0.00 0.00 4.12
2207 2237 2.514824 GCTCAAGCCCGACCCATC 60.515 66.667 0.00 0.00 34.31 3.51
2208 2238 2.989639 CTCAAGCCCGACCCATCA 59.010 61.111 0.00 0.00 0.00 3.07
2209 2239 1.450312 CTCAAGCCCGACCCATCAC 60.450 63.158 0.00 0.00 0.00 3.06
2210 2240 1.903877 CTCAAGCCCGACCCATCACT 61.904 60.000 0.00 0.00 0.00 3.41
2211 2241 1.450312 CAAGCCCGACCCATCACTC 60.450 63.158 0.00 0.00 0.00 3.51
2212 2242 1.918293 AAGCCCGACCCATCACTCA 60.918 57.895 0.00 0.00 0.00 3.41
2213 2243 1.488705 AAGCCCGACCCATCACTCAA 61.489 55.000 0.00 0.00 0.00 3.02
2214 2244 1.002624 GCCCGACCCATCACTCAAA 60.003 57.895 0.00 0.00 0.00 2.69
2215 2245 1.026718 GCCCGACCCATCACTCAAAG 61.027 60.000 0.00 0.00 0.00 2.77
2216 2246 0.613260 CCCGACCCATCACTCAAAGA 59.387 55.000 0.00 0.00 0.00 2.52
2217 2247 1.003118 CCCGACCCATCACTCAAAGAA 59.997 52.381 0.00 0.00 0.00 2.52
2218 2248 2.350522 CCGACCCATCACTCAAAGAAG 58.649 52.381 0.00 0.00 0.00 2.85
2219 2249 1.734465 CGACCCATCACTCAAAGAAGC 59.266 52.381 0.00 0.00 0.00 3.86
2220 2250 2.087646 GACCCATCACTCAAAGAAGCC 58.912 52.381 0.00 0.00 0.00 4.35
2221 2251 1.272147 ACCCATCACTCAAAGAAGCCC 60.272 52.381 0.00 0.00 0.00 5.19
2222 2252 1.089920 CCATCACTCAAAGAAGCCCG 58.910 55.000 0.00 0.00 0.00 6.13
2223 2253 1.339055 CCATCACTCAAAGAAGCCCGA 60.339 52.381 0.00 0.00 0.00 5.14
2224 2254 1.734465 CATCACTCAAAGAAGCCCGAC 59.266 52.381 0.00 0.00 0.00 4.79
2225 2255 0.756294 TCACTCAAAGAAGCCCGACA 59.244 50.000 0.00 0.00 0.00 4.35
2226 2256 1.347707 TCACTCAAAGAAGCCCGACAT 59.652 47.619 0.00 0.00 0.00 3.06
2227 2257 1.466167 CACTCAAAGAAGCCCGACATG 59.534 52.381 0.00 0.00 0.00 3.21
2228 2258 1.072331 ACTCAAAGAAGCCCGACATGT 59.928 47.619 0.00 0.00 0.00 3.21
2229 2259 1.734465 CTCAAAGAAGCCCGACATGTC 59.266 52.381 16.21 16.21 0.00 3.06
2230 2260 1.347707 TCAAAGAAGCCCGACATGTCT 59.652 47.619 22.95 4.18 0.00 3.41
2231 2261 2.154462 CAAAGAAGCCCGACATGTCTT 58.846 47.619 22.95 10.78 0.00 3.01
2232 2262 1.813513 AAGAAGCCCGACATGTCTTG 58.186 50.000 22.95 14.46 0.00 3.02
2233 2263 0.036010 AGAAGCCCGACATGTCTTGG 60.036 55.000 22.95 21.88 0.00 3.61
2234 2264 1.002134 AAGCCCGACATGTCTTGGG 60.002 57.895 26.41 26.41 44.88 4.12
2236 2266 2.438434 CCCGACATGTCTTGGGCC 60.438 66.667 21.57 0.00 34.25 5.80
2237 2267 2.819595 CCGACATGTCTTGGGCCG 60.820 66.667 22.95 8.92 0.00 6.13
2238 2268 2.047274 CGACATGTCTTGGGCCGT 60.047 61.111 22.95 0.00 0.00 5.68
2239 2269 1.216977 CGACATGTCTTGGGCCGTA 59.783 57.895 22.95 0.00 0.00 4.02
2240 2270 0.806102 CGACATGTCTTGGGCCGTAG 60.806 60.000 22.95 0.00 0.00 3.51
2241 2271 0.535335 GACATGTCTTGGGCCGTAGA 59.465 55.000 18.83 0.85 0.00 2.59
2242 2272 0.249398 ACATGTCTTGGGCCGTAGAC 59.751 55.000 24.12 24.12 40.89 2.59
2243 2273 0.537188 CATGTCTTGGGCCGTAGACT 59.463 55.000 28.15 16.82 41.05 3.24
2244 2274 0.537188 ATGTCTTGGGCCGTAGACTG 59.463 55.000 28.15 4.56 41.05 3.51
2245 2275 1.218316 GTCTTGGGCCGTAGACTGG 59.782 63.158 23.79 0.00 38.17 4.00
2246 2276 1.987855 TCTTGGGCCGTAGACTGGG 60.988 63.158 0.00 0.00 0.00 4.45
2251 2281 2.760385 GCCGTAGACTGGGCCTCT 60.760 66.667 4.53 2.23 43.64 3.69
2252 2282 2.359967 GCCGTAGACTGGGCCTCTT 61.360 63.158 4.53 0.00 43.64 2.85
2253 2283 1.817209 CCGTAGACTGGGCCTCTTC 59.183 63.158 4.53 0.00 0.00 2.87
2254 2284 1.677637 CCGTAGACTGGGCCTCTTCC 61.678 65.000 4.53 0.00 0.00 3.46
2255 2285 0.684805 CGTAGACTGGGCCTCTTCCT 60.685 60.000 4.53 0.00 0.00 3.36
2256 2286 1.574263 GTAGACTGGGCCTCTTCCTT 58.426 55.000 4.53 0.00 0.00 3.36
2257 2287 2.748388 GTAGACTGGGCCTCTTCCTTA 58.252 52.381 4.53 0.00 0.00 2.69
2258 2288 2.344093 AGACTGGGCCTCTTCCTTAA 57.656 50.000 4.53 0.00 0.00 1.85
2259 2289 2.632537 AGACTGGGCCTCTTCCTTAAA 58.367 47.619 4.53 0.00 0.00 1.52
2260 2290 2.306219 AGACTGGGCCTCTTCCTTAAAC 59.694 50.000 4.53 0.00 0.00 2.01
2261 2291 2.306219 GACTGGGCCTCTTCCTTAAACT 59.694 50.000 4.53 0.00 0.00 2.66
2262 2292 2.040412 ACTGGGCCTCTTCCTTAAACTG 59.960 50.000 4.53 0.00 0.00 3.16
2263 2293 1.271926 TGGGCCTCTTCCTTAAACTGC 60.272 52.381 4.53 0.00 0.00 4.40
2264 2294 1.271926 GGGCCTCTTCCTTAAACTGCA 60.272 52.381 0.84 0.00 0.00 4.41
2265 2295 2.514803 GGCCTCTTCCTTAAACTGCAA 58.485 47.619 0.00 0.00 0.00 4.08
2266 2296 2.890945 GGCCTCTTCCTTAAACTGCAAA 59.109 45.455 0.00 0.00 0.00 3.68
2267 2297 3.511540 GGCCTCTTCCTTAAACTGCAAAT 59.488 43.478 0.00 0.00 0.00 2.32
2268 2298 4.705023 GGCCTCTTCCTTAAACTGCAAATA 59.295 41.667 0.00 0.00 0.00 1.40
2269 2299 5.393135 GGCCTCTTCCTTAAACTGCAAATAC 60.393 44.000 0.00 0.00 0.00 1.89
2270 2300 5.673818 GCCTCTTCCTTAAACTGCAAATACG 60.674 44.000 0.00 0.00 0.00 3.06
2271 2301 5.642063 CCTCTTCCTTAAACTGCAAATACGA 59.358 40.000 0.00 0.00 0.00 3.43
2272 2302 6.402226 CCTCTTCCTTAAACTGCAAATACGAC 60.402 42.308 0.00 0.00 0.00 4.34
2273 2303 4.914312 TCCTTAAACTGCAAATACGACG 57.086 40.909 0.00 0.00 0.00 5.12
2274 2304 3.680937 TCCTTAAACTGCAAATACGACGG 59.319 43.478 0.00 0.00 0.00 4.79
2275 2305 3.181514 CCTTAAACTGCAAATACGACGGG 60.182 47.826 0.00 0.00 0.00 5.28
2276 2306 0.519961 AAACTGCAAATACGACGGGC 59.480 50.000 0.00 0.00 0.00 6.13
2277 2307 1.303091 AACTGCAAATACGACGGGCC 61.303 55.000 0.00 0.00 0.00 5.80
2278 2308 2.437002 TGCAAATACGACGGGCCC 60.437 61.111 13.57 13.57 0.00 5.80
2279 2309 3.569690 GCAAATACGACGGGCCCG 61.570 66.667 42.17 42.17 46.03 6.13
2292 2322 2.027751 GCCCGAGCCTGATACGTC 59.972 66.667 0.00 0.00 0.00 4.34
2293 2323 2.728817 CCCGAGCCTGATACGTCC 59.271 66.667 0.00 0.00 0.00 4.79
2294 2324 2.125326 CCCGAGCCTGATACGTCCA 61.125 63.158 0.00 0.00 0.00 4.02
2295 2325 1.464376 CCCGAGCCTGATACGTCCAT 61.464 60.000 0.00 0.00 0.00 3.41
2296 2326 0.389391 CCGAGCCTGATACGTCCATT 59.611 55.000 0.00 0.00 0.00 3.16
2297 2327 1.202533 CCGAGCCTGATACGTCCATTT 60.203 52.381 0.00 0.00 0.00 2.32
2298 2328 2.550978 CGAGCCTGATACGTCCATTTT 58.449 47.619 0.00 0.00 0.00 1.82
2299 2329 2.285220 CGAGCCTGATACGTCCATTTTG 59.715 50.000 0.00 0.00 0.00 2.44
2300 2330 2.017049 AGCCTGATACGTCCATTTTGC 58.983 47.619 0.00 0.00 0.00 3.68
2301 2331 1.742831 GCCTGATACGTCCATTTTGCA 59.257 47.619 0.00 0.00 0.00 4.08
2302 2332 2.358898 GCCTGATACGTCCATTTTGCAT 59.641 45.455 0.00 0.00 0.00 3.96
2303 2333 3.548818 GCCTGATACGTCCATTTTGCATC 60.549 47.826 0.00 0.00 0.00 3.91
2304 2334 3.627123 CCTGATACGTCCATTTTGCATCA 59.373 43.478 0.00 0.00 0.00 3.07
2305 2335 4.276678 CCTGATACGTCCATTTTGCATCAT 59.723 41.667 0.00 0.00 0.00 2.45
2306 2336 5.172460 TGATACGTCCATTTTGCATCATG 57.828 39.130 0.00 0.00 0.00 3.07
2307 2337 2.282701 ACGTCCATTTTGCATCATGC 57.717 45.000 1.35 1.35 45.29 4.06
2308 2338 1.820519 ACGTCCATTTTGCATCATGCT 59.179 42.857 11.84 0.00 45.31 3.79
2309 2339 2.231964 ACGTCCATTTTGCATCATGCTT 59.768 40.909 11.84 0.00 45.31 3.91
2310 2340 3.255725 CGTCCATTTTGCATCATGCTTT 58.744 40.909 11.84 0.00 45.31 3.51
2311 2341 3.680937 CGTCCATTTTGCATCATGCTTTT 59.319 39.130 11.84 0.00 45.31 2.27
2312 2342 4.863689 CGTCCATTTTGCATCATGCTTTTA 59.136 37.500 11.84 0.00 45.31 1.52
2313 2343 5.521010 CGTCCATTTTGCATCATGCTTTTAT 59.479 36.000 11.84 0.00 45.31 1.40
2314 2344 6.696583 CGTCCATTTTGCATCATGCTTTTATA 59.303 34.615 11.84 0.00 45.31 0.98
2315 2345 7.383029 CGTCCATTTTGCATCATGCTTTTATAT 59.617 33.333 11.84 0.00 45.31 0.86
2316 2346 8.706035 GTCCATTTTGCATCATGCTTTTATATC 58.294 33.333 11.84 0.00 45.31 1.63
2317 2347 8.422566 TCCATTTTGCATCATGCTTTTATATCA 58.577 29.630 11.84 0.00 45.31 2.15
2318 2348 9.047371 CCATTTTGCATCATGCTTTTATATCAA 57.953 29.630 11.84 0.00 45.31 2.57
2349 2379 7.622893 TTGCATTATGAGCTGTTATTACACA 57.377 32.000 0.00 0.00 0.00 3.72
2350 2380 7.806409 TGCATTATGAGCTGTTATTACACAT 57.194 32.000 0.00 0.00 0.00 3.21
2351 2381 8.224389 TGCATTATGAGCTGTTATTACACATT 57.776 30.769 0.00 0.00 0.00 2.71
2352 2382 9.336171 TGCATTATGAGCTGTTATTACACATTA 57.664 29.630 0.00 0.00 0.00 1.90
2357 2387 8.962884 ATGAGCTGTTATTACACATTATGTCA 57.037 30.769 0.00 0.00 42.09 3.58
2358 2388 8.196802 TGAGCTGTTATTACACATTATGTCAC 57.803 34.615 0.00 0.00 42.09 3.67
2359 2389 7.821846 TGAGCTGTTATTACACATTATGTCACA 59.178 33.333 0.00 0.00 42.09 3.58
2360 2390 8.560355 AGCTGTTATTACACATTATGTCACAA 57.440 30.769 0.00 0.00 42.09 3.33
2361 2391 9.177608 AGCTGTTATTACACATTATGTCACAAT 57.822 29.630 0.00 0.00 42.09 2.71
2370 2400 7.930217 ACACATTATGTCACAATACTTATGCC 58.070 34.615 0.00 0.00 36.54 4.40
2371 2401 7.775093 ACACATTATGTCACAATACTTATGCCT 59.225 33.333 0.00 0.00 36.54 4.75
2372 2402 9.271828 CACATTATGTCACAATACTTATGCCTA 57.728 33.333 0.00 0.00 0.00 3.93
2377 2407 8.839310 ATGTCACAATACTTATGCCTATTCTC 57.161 34.615 0.00 0.00 0.00 2.87
2378 2408 8.023021 TGTCACAATACTTATGCCTATTCTCT 57.977 34.615 0.00 0.00 0.00 3.10
2379 2409 8.144478 TGTCACAATACTTATGCCTATTCTCTC 58.856 37.037 0.00 0.00 0.00 3.20
2380 2410 8.364142 GTCACAATACTTATGCCTATTCTCTCT 58.636 37.037 0.00 0.00 0.00 3.10
2381 2411 8.928448 TCACAATACTTATGCCTATTCTCTCTT 58.072 33.333 0.00 0.00 0.00 2.85
2393 2423 9.959721 TGCCTATTCTCTCTTATTTTACAAGTT 57.040 29.630 0.00 0.00 0.00 2.66
2413 2443 9.014297 ACAAGTTTTACATAAAGAGGGAGAATG 57.986 33.333 0.00 0.00 0.00 2.67
2414 2444 7.631717 AGTTTTACATAAAGAGGGAGAATGC 57.368 36.000 0.00 0.00 0.00 3.56
2422 2452 4.496336 GGGAGAATGCCGGCAGCT 62.496 66.667 35.36 31.54 44.23 4.24
2423 2453 3.207669 GGAGAATGCCGGCAGCTG 61.208 66.667 35.36 10.11 44.23 4.24
2424 2454 3.207669 GAGAATGCCGGCAGCTGG 61.208 66.667 35.36 17.00 44.23 4.85
2425 2455 4.809496 AGAATGCCGGCAGCTGGG 62.809 66.667 35.36 10.40 44.23 4.45
2426 2456 4.802051 GAATGCCGGCAGCTGGGA 62.802 66.667 35.36 20.51 44.23 4.37
2427 2457 4.133373 AATGCCGGCAGCTGGGAT 62.133 61.111 35.36 21.38 42.80 3.85
2428 2458 3.667217 AATGCCGGCAGCTGGGATT 62.667 57.895 35.36 29.63 44.27 3.01
2429 2459 4.802051 TGCCGGCAGCTGGGATTC 62.802 66.667 29.03 5.51 44.23 2.52
2430 2460 4.496336 GCCGGCAGCTGGGATTCT 62.496 66.667 24.80 0.00 38.99 2.40
2431 2461 2.515523 CCGGCAGCTGGGATTCTG 60.516 66.667 17.12 2.83 0.00 3.02
2432 2462 2.515523 CGGCAGCTGGGATTCTGG 60.516 66.667 17.12 0.00 0.00 3.86
2433 2463 2.832201 GGCAGCTGGGATTCTGGC 60.832 66.667 17.12 0.00 46.11 4.85
2434 2464 2.274760 GCAGCTGGGATTCTGGCT 59.725 61.111 17.12 0.00 35.23 4.75
2435 2465 4.237445 CAGCTGGGATTCTGGCTG 57.763 61.111 5.57 0.00 44.45 4.85
2436 2466 1.453379 CAGCTGGGATTCTGGCTGG 60.453 63.158 5.57 0.00 45.59 4.85
2437 2467 1.617536 AGCTGGGATTCTGGCTGGA 60.618 57.895 0.00 0.00 33.50 3.86
2438 2468 1.210204 AGCTGGGATTCTGGCTGGAA 61.210 55.000 0.00 0.00 33.50 3.53
2439 2469 0.323725 GCTGGGATTCTGGCTGGAAA 60.324 55.000 0.00 0.00 0.00 3.13
2440 2470 1.892329 GCTGGGATTCTGGCTGGAAAA 60.892 52.381 0.00 0.00 0.00 2.29
2441 2471 2.097825 CTGGGATTCTGGCTGGAAAAG 58.902 52.381 0.00 0.00 0.00 2.27
2442 2472 1.272648 TGGGATTCTGGCTGGAAAAGG 60.273 52.381 0.00 0.00 0.00 3.11
2443 2473 1.005924 GGGATTCTGGCTGGAAAAGGA 59.994 52.381 0.00 0.00 0.00 3.36
2444 2474 2.373224 GGATTCTGGCTGGAAAAGGAG 58.627 52.381 0.00 0.00 0.00 3.69
2445 2475 1.747924 GATTCTGGCTGGAAAAGGAGC 59.252 52.381 0.00 0.00 34.23 4.70
2446 2476 0.478072 TTCTGGCTGGAAAAGGAGCA 59.522 50.000 0.00 0.00 36.90 4.26
2447 2477 0.478072 TCTGGCTGGAAAAGGAGCAA 59.522 50.000 0.00 0.00 36.90 3.91
2448 2478 1.133513 TCTGGCTGGAAAAGGAGCAAA 60.134 47.619 0.00 0.00 36.90 3.68
2449 2479 1.897802 CTGGCTGGAAAAGGAGCAAAT 59.102 47.619 0.00 0.00 36.90 2.32
2450 2480 3.091545 CTGGCTGGAAAAGGAGCAAATA 58.908 45.455 0.00 0.00 36.90 1.40
2451 2481 3.703052 CTGGCTGGAAAAGGAGCAAATAT 59.297 43.478 0.00 0.00 36.90 1.28
2452 2482 4.095946 TGGCTGGAAAAGGAGCAAATATT 58.904 39.130 0.00 0.00 36.90 1.28
2453 2483 5.268387 TGGCTGGAAAAGGAGCAAATATTA 58.732 37.500 0.00 0.00 36.90 0.98
2454 2484 5.360714 TGGCTGGAAAAGGAGCAAATATTAG 59.639 40.000 0.00 0.00 36.90 1.73
2455 2485 5.594317 GGCTGGAAAAGGAGCAAATATTAGA 59.406 40.000 0.00 0.00 36.90 2.10
2456 2486 6.238869 GGCTGGAAAAGGAGCAAATATTAGAG 60.239 42.308 0.00 0.00 36.90 2.43
2457 2487 6.543831 GCTGGAAAAGGAGCAAATATTAGAGA 59.456 38.462 0.00 0.00 35.15 3.10
2458 2488 7.467947 GCTGGAAAAGGAGCAAATATTAGAGAC 60.468 40.741 0.00 0.00 35.15 3.36
2459 2489 6.828785 TGGAAAAGGAGCAAATATTAGAGACC 59.171 38.462 0.00 0.00 0.00 3.85
2460 2490 7.057264 GGAAAAGGAGCAAATATTAGAGACCT 58.943 38.462 0.00 0.00 0.00 3.85
2461 2491 8.211629 GGAAAAGGAGCAAATATTAGAGACCTA 58.788 37.037 0.00 0.00 0.00 3.08
2462 2492 9.785982 GAAAAGGAGCAAATATTAGAGACCTAT 57.214 33.333 0.00 0.00 0.00 2.57
2464 2494 9.785982 AAAGGAGCAAATATTAGAGACCTATTC 57.214 33.333 0.00 0.00 0.00 1.75
2465 2495 8.497910 AGGAGCAAATATTAGAGACCTATTCA 57.502 34.615 0.00 0.00 0.00 2.57
2466 2496 8.592809 AGGAGCAAATATTAGAGACCTATTCAG 58.407 37.037 0.00 0.00 0.00 3.02
2467 2497 7.333174 GGAGCAAATATTAGAGACCTATTCAGC 59.667 40.741 0.00 0.00 0.00 4.26
2468 2498 7.739825 AGCAAATATTAGAGACCTATTCAGCA 58.260 34.615 0.00 0.00 0.00 4.41
2469 2499 7.659390 AGCAAATATTAGAGACCTATTCAGCAC 59.341 37.037 0.00 0.00 0.00 4.40
2470 2500 7.442364 GCAAATATTAGAGACCTATTCAGCACA 59.558 37.037 0.00 0.00 0.00 4.57
2471 2501 8.986847 CAAATATTAGAGACCTATTCAGCACAG 58.013 37.037 0.00 0.00 0.00 3.66
2472 2502 2.977772 AGAGACCTATTCAGCACAGC 57.022 50.000 0.00 0.00 0.00 4.40
2473 2503 2.465813 AGAGACCTATTCAGCACAGCT 58.534 47.619 0.00 0.00 40.77 4.24
2474 2504 2.430332 AGAGACCTATTCAGCACAGCTC 59.570 50.000 0.00 0.00 36.40 4.09
2475 2505 1.484240 AGACCTATTCAGCACAGCTCC 59.516 52.381 0.00 0.00 36.40 4.70
2476 2506 1.208052 GACCTATTCAGCACAGCTCCA 59.792 52.381 0.00 0.00 36.40 3.86
2477 2507 1.630369 ACCTATTCAGCACAGCTCCAA 59.370 47.619 0.00 0.00 36.40 3.53
2478 2508 2.040278 ACCTATTCAGCACAGCTCCAAA 59.960 45.455 0.00 0.00 36.40 3.28
2479 2509 3.084039 CCTATTCAGCACAGCTCCAAAA 58.916 45.455 0.00 0.00 36.40 2.44
2480 2510 3.128242 CCTATTCAGCACAGCTCCAAAAG 59.872 47.826 0.00 0.00 36.40 2.27
2481 2511 2.057137 TTCAGCACAGCTCCAAAAGT 57.943 45.000 0.00 0.00 36.40 2.66
2482 2512 1.597742 TCAGCACAGCTCCAAAAGTC 58.402 50.000 0.00 0.00 36.40 3.01
2483 2513 0.595095 CAGCACAGCTCCAAAAGTCC 59.405 55.000 0.00 0.00 36.40 3.85
2484 2514 0.538287 AGCACAGCTCCAAAAGTCCC 60.538 55.000 0.00 0.00 30.62 4.46
2485 2515 1.856265 GCACAGCTCCAAAAGTCCCG 61.856 60.000 0.00 0.00 0.00 5.14
2486 2516 0.250295 CACAGCTCCAAAAGTCCCGA 60.250 55.000 0.00 0.00 0.00 5.14
2487 2517 0.472471 ACAGCTCCAAAAGTCCCGAA 59.528 50.000 0.00 0.00 0.00 4.30
2488 2518 1.133915 ACAGCTCCAAAAGTCCCGAAA 60.134 47.619 0.00 0.00 0.00 3.46
2489 2519 1.266989 CAGCTCCAAAAGTCCCGAAAC 59.733 52.381 0.00 0.00 0.00 2.78
2490 2520 1.143073 AGCTCCAAAAGTCCCGAAACT 59.857 47.619 0.00 0.00 0.00 2.66
2491 2521 1.954382 GCTCCAAAAGTCCCGAAACTT 59.046 47.619 0.00 0.00 41.20 2.66
2492 2522 2.031069 GCTCCAAAAGTCCCGAAACTTC 60.031 50.000 3.34 0.00 38.52 3.01
2493 2523 3.211045 CTCCAAAAGTCCCGAAACTTCA 58.789 45.455 3.34 0.00 38.52 3.02
2494 2524 2.946990 TCCAAAAGTCCCGAAACTTCAC 59.053 45.455 3.34 0.00 38.52 3.18
2495 2525 2.286772 CCAAAAGTCCCGAAACTTCACG 60.287 50.000 3.34 0.00 38.52 4.35
2508 2538 4.766404 AACTTCACGGATGATGTTTTCC 57.234 40.909 3.47 0.00 45.94 3.13
2509 2539 3.750371 ACTTCACGGATGATGTTTTCCA 58.250 40.909 0.00 0.00 39.54 3.53
2510 2540 4.141287 ACTTCACGGATGATGTTTTCCAA 58.859 39.130 0.00 0.00 39.54 3.53
2511 2541 4.582656 ACTTCACGGATGATGTTTTCCAAA 59.417 37.500 0.00 0.00 39.54 3.28
2512 2542 5.243730 ACTTCACGGATGATGTTTTCCAAAT 59.756 36.000 0.00 0.00 39.54 2.32
2513 2543 6.432783 ACTTCACGGATGATGTTTTCCAAATA 59.567 34.615 0.00 0.00 39.54 1.40
2514 2544 7.122650 ACTTCACGGATGATGTTTTCCAAATAT 59.877 33.333 0.00 0.00 39.54 1.28
2515 2545 8.512966 TTCACGGATGATGTTTTCCAAATATA 57.487 30.769 0.00 0.00 33.85 0.86
2516 2546 8.690203 TCACGGATGATGTTTTCCAAATATAT 57.310 30.769 0.00 0.00 31.99 0.86
2517 2547 9.785982 TCACGGATGATGTTTTCCAAATATATA 57.214 29.630 0.00 0.00 31.99 0.86
2547 2577 2.949106 CGCAAGCACTTCACCAGG 59.051 61.111 0.00 0.00 0.00 4.45
2548 2578 2.620112 CGCAAGCACTTCACCAGGG 61.620 63.158 0.00 0.00 0.00 4.45
2549 2579 2.270986 GCAAGCACTTCACCAGGGG 61.271 63.158 0.00 0.00 0.00 4.79
2550 2580 1.604593 CAAGCACTTCACCAGGGGG 60.605 63.158 0.00 0.00 41.29 5.40
2568 2598 4.927782 GCCACACCCTGCACACGA 62.928 66.667 0.00 0.00 0.00 4.35
2569 2599 2.666190 CCACACCCTGCACACGAG 60.666 66.667 0.00 0.00 0.00 4.18
2570 2600 2.666190 CACACCCTGCACACGAGG 60.666 66.667 0.00 0.00 0.00 4.63
2574 2604 2.579201 CCCTGCACACGAGGGTAG 59.421 66.667 0.00 0.00 44.85 3.18
2575 2605 2.579201 CCTGCACACGAGGGTAGG 59.421 66.667 4.65 4.65 0.00 3.18
2576 2606 2.579201 CTGCACACGAGGGTAGGG 59.421 66.667 0.00 0.00 0.00 3.53
2577 2607 3.000819 TGCACACGAGGGTAGGGG 61.001 66.667 0.00 0.00 0.00 4.79
2578 2608 4.468689 GCACACGAGGGTAGGGGC 62.469 72.222 0.00 0.00 0.00 5.80
2579 2609 4.143333 CACACGAGGGTAGGGGCG 62.143 72.222 0.00 0.00 0.00 6.13
2628 2658 4.798682 CTACCTCGTGGGCCCCCT 62.799 72.222 22.27 0.00 39.10 4.79
2662 2692 3.733337 GTGACCACCTTCTGCTATATGG 58.267 50.000 0.00 0.00 0.00 2.74
2663 2693 3.388024 GTGACCACCTTCTGCTATATGGA 59.612 47.826 0.00 0.00 0.00 3.41
2664 2694 3.388024 TGACCACCTTCTGCTATATGGAC 59.612 47.826 0.00 0.00 0.00 4.02
2665 2695 3.643792 GACCACCTTCTGCTATATGGACT 59.356 47.826 0.00 0.00 0.00 3.85
2666 2696 3.643792 ACCACCTTCTGCTATATGGACTC 59.356 47.826 0.00 0.00 0.00 3.36
2667 2697 3.900601 CCACCTTCTGCTATATGGACTCT 59.099 47.826 0.00 0.00 0.00 3.24
2668 2698 4.346418 CCACCTTCTGCTATATGGACTCTT 59.654 45.833 0.00 0.00 0.00 2.85
2669 2699 5.163258 CCACCTTCTGCTATATGGACTCTTT 60.163 44.000 0.00 0.00 0.00 2.52
2670 2700 5.988561 CACCTTCTGCTATATGGACTCTTTC 59.011 44.000 0.00 0.00 0.00 2.62
2671 2701 5.221342 ACCTTCTGCTATATGGACTCTTTCG 60.221 44.000 0.00 0.00 0.00 3.46
2672 2702 5.010112 CCTTCTGCTATATGGACTCTTTCGA 59.990 44.000 0.00 0.00 0.00 3.71
2673 2703 6.295011 CCTTCTGCTATATGGACTCTTTCGAT 60.295 42.308 0.00 0.00 0.00 3.59
2674 2704 6.018589 TCTGCTATATGGACTCTTTCGATG 57.981 41.667 0.00 0.00 0.00 3.84
2675 2705 5.047731 TCTGCTATATGGACTCTTTCGATGG 60.048 44.000 0.00 0.00 0.00 3.51
2676 2706 4.021104 TGCTATATGGACTCTTTCGATGGG 60.021 45.833 0.00 0.00 0.00 4.00
2677 2707 4.220821 GCTATATGGACTCTTTCGATGGGA 59.779 45.833 0.00 0.00 0.00 4.37
2678 2708 5.279506 GCTATATGGACTCTTTCGATGGGAA 60.280 44.000 0.00 0.00 0.00 3.97
2679 2709 5.630415 ATATGGACTCTTTCGATGGGAAA 57.370 39.130 0.00 0.00 42.23 3.13
2680 2710 3.780804 TGGACTCTTTCGATGGGAAAA 57.219 42.857 0.00 0.00 43.73 2.29
2681 2711 4.093472 TGGACTCTTTCGATGGGAAAAA 57.907 40.909 0.00 0.00 43.73 1.94
2702 2732 6.382869 AAAAATCATAAGCCATCTTCTCGG 57.617 37.500 0.00 0.00 33.85 4.63
2703 2733 4.963318 AATCATAAGCCATCTTCTCGGA 57.037 40.909 0.00 0.00 33.85 4.55
2704 2734 3.735237 TCATAAGCCATCTTCTCGGAC 57.265 47.619 0.00 0.00 33.85 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 6.120220 CGGGTATTGAAAGGAAGGTATTTCT 58.880 40.000 0.00 0.00 36.57 2.52
84 85 3.998913 TTGCTTACTGATCATGGGTCA 57.001 42.857 0.00 0.00 0.00 4.02
91 92 4.009675 GGTTGGTGATTGCTTACTGATCA 58.990 43.478 0.00 0.00 0.00 2.92
107 108 1.273324 TGTTGGGGAAACAAGGTTGGT 60.273 47.619 0.00 0.00 45.85 3.67
141 142 7.177744 GGAATGGGTTTTAAGGATTTGACACTA 59.822 37.037 0.00 0.00 0.00 2.74
190 191 1.642112 TTGCATTCTTGGGATTGGCA 58.358 45.000 0.00 0.00 0.00 4.92
208 209 9.558396 TGAAGATGGTAAAAAGAAAATGCATTT 57.442 25.926 18.99 18.99 0.00 2.32
246 247 0.674895 GTGTCTGATCAGTGGTGGCC 60.675 60.000 21.92 0.00 0.00 5.36
247 248 0.035317 TGTGTCTGATCAGTGGTGGC 59.965 55.000 21.92 8.59 0.00 5.01
248 249 2.549064 TTGTGTCTGATCAGTGGTGG 57.451 50.000 21.92 0.00 0.00 4.61
249 250 3.935315 AGATTGTGTCTGATCAGTGGTG 58.065 45.455 21.92 0.00 35.31 4.17
274 275 4.615452 CGGTTACTACTTGCGAGAAGTCTT 60.615 45.833 8.31 0.00 0.00 3.01
276 277 3.169733 CGGTTACTACTTGCGAGAAGTC 58.830 50.000 8.31 0.00 0.00 3.01
292 293 3.018149 AGTTGTTTCTGTTTGCCGGTTA 58.982 40.909 1.90 0.00 0.00 2.85
315 316 7.406104 ACTCAGGCTATTCCTACTTTCATTTT 58.594 34.615 0.00 0.00 45.52 1.82
393 394 2.289631 CGTGGCAGAATATCCATGGCTA 60.290 50.000 6.96 1.23 39.98 3.93
422 423 6.040391 CCACAACTACTTTCAAATTTCTCCCA 59.960 38.462 0.00 0.00 0.00 4.37
465 466 6.950860 TGATTCATATCTGGGTATGCCTAA 57.049 37.500 0.00 0.00 33.15 2.69
496 497 3.303990 CCAACTGGATATTTTCGATGGCG 60.304 47.826 0.00 0.00 37.39 5.69
498 499 3.004734 GCCCAACTGGATATTTTCGATGG 59.995 47.826 0.00 0.00 37.39 3.51
500 501 3.117512 AGGCCCAACTGGATATTTTCGAT 60.118 43.478 0.00 0.00 37.39 3.59
502 503 2.654863 AGGCCCAACTGGATATTTTCG 58.345 47.619 0.00 0.00 37.39 3.46
536 537 3.877450 GAGGCGGATGGATGGGCA 61.877 66.667 0.00 0.00 0.00 5.36
537 538 4.650377 GGAGGCGGATGGATGGGC 62.650 72.222 0.00 0.00 0.00 5.36
538 539 3.170672 TGGAGGCGGATGGATGGG 61.171 66.667 0.00 0.00 0.00 4.00
539 540 2.109517 CTCTGGAGGCGGATGGATGG 62.110 65.000 0.00 0.00 0.00 3.51
540 541 1.370437 CTCTGGAGGCGGATGGATG 59.630 63.158 0.00 0.00 0.00 3.51
541 542 2.515071 GCTCTGGAGGCGGATGGAT 61.515 63.158 0.00 0.00 0.00 3.41
542 543 3.157252 GCTCTGGAGGCGGATGGA 61.157 66.667 0.00 0.00 0.00 3.41
543 544 3.457625 CTGCTCTGGAGGCGGATGG 62.458 68.421 0.00 0.00 38.23 3.51
544 545 2.108566 CTGCTCTGGAGGCGGATG 59.891 66.667 0.00 0.00 38.23 3.51
545 546 3.859414 GCTGCTCTGGAGGCGGAT 61.859 66.667 0.00 0.00 38.23 4.18
550 551 4.869440 CGCTCGCTGCTCTGGAGG 62.869 72.222 0.00 0.00 40.11 4.30
551 552 3.348055 TTCGCTCGCTGCTCTGGAG 62.348 63.158 0.00 0.00 40.11 3.86
552 553 3.348055 CTTCGCTCGCTGCTCTGGA 62.348 63.158 0.00 0.00 40.11 3.86
553 554 2.884685 CTTCGCTCGCTGCTCTGG 60.885 66.667 0.00 0.00 40.11 3.86
554 555 2.884685 CCTTCGCTCGCTGCTCTG 60.885 66.667 0.00 0.00 40.11 3.35
555 556 4.810661 GCCTTCGCTCGCTGCTCT 62.811 66.667 0.00 0.00 40.11 4.09
576 577 3.108288 GCGAACCTGAGGATCCCCC 62.108 68.421 4.99 0.90 0.00 5.40
577 578 2.506472 GCGAACCTGAGGATCCCC 59.494 66.667 4.99 0.00 0.00 4.81
578 579 2.506472 GGCGAACCTGAGGATCCC 59.494 66.667 4.99 2.86 0.00 3.85
579 580 2.107141 CGGCGAACCTGAGGATCC 59.893 66.667 4.99 2.48 0.00 3.36
580 581 2.107141 CCGGCGAACCTGAGGATC 59.893 66.667 9.30 0.83 0.00 3.36
581 582 4.162690 GCCGGCGAACCTGAGGAT 62.163 66.667 12.58 0.00 0.00 3.24
584 585 2.859273 AATCTGCCGGCGAACCTGAG 62.859 60.000 23.90 11.94 0.00 3.35
585 586 2.954684 AATCTGCCGGCGAACCTGA 61.955 57.895 23.90 12.75 0.00 3.86
586 587 2.436646 AATCTGCCGGCGAACCTG 60.437 61.111 23.90 7.47 0.00 4.00
587 588 2.436646 CAATCTGCCGGCGAACCT 60.437 61.111 23.90 8.29 0.00 3.50
588 589 4.179579 GCAATCTGCCGGCGAACC 62.180 66.667 23.90 10.45 37.42 3.62
589 590 3.430862 TGCAATCTGCCGGCGAAC 61.431 61.111 23.90 15.15 44.23 3.95
590 591 3.430862 GTGCAATCTGCCGGCGAA 61.431 61.111 23.90 13.09 44.23 4.70
591 592 3.974835 ATGTGCAATCTGCCGGCGA 62.975 57.895 23.90 21.83 44.23 5.54
592 593 3.459378 GATGTGCAATCTGCCGGCG 62.459 63.158 23.90 16.91 44.23 6.46
593 594 0.815213 TAGATGTGCAATCTGCCGGC 60.815 55.000 22.73 22.73 44.23 6.13
594 595 1.600957 CTTAGATGTGCAATCTGCCGG 59.399 52.381 16.76 0.00 44.23 6.13
595 596 2.031314 CACTTAGATGTGCAATCTGCCG 59.969 50.000 16.76 9.91 44.23 5.69
596 597 3.064545 GTCACTTAGATGTGCAATCTGCC 59.935 47.826 16.76 0.00 44.23 4.85
597 598 3.686241 TGTCACTTAGATGTGCAATCTGC 59.314 43.478 16.76 0.00 45.29 4.26
598 599 4.692155 TGTGTCACTTAGATGTGCAATCTG 59.308 41.667 16.76 7.65 37.81 2.90
599 600 4.898320 TGTGTCACTTAGATGTGCAATCT 58.102 39.130 13.51 13.51 37.81 2.40
600 601 5.611796 TTGTGTCACTTAGATGTGCAATC 57.388 39.130 4.27 0.00 37.81 2.67
653 654 6.404293 CGGAGATTCACGTGGGAATTATTTTT 60.404 38.462 17.00 0.00 37.61 1.94
658 661 2.498481 ACGGAGATTCACGTGGGAATTA 59.502 45.455 17.00 0.00 42.39 1.40
667 670 4.028852 TGATCTTACACGGAGATTCACG 57.971 45.455 0.00 0.11 34.13 4.35
669 672 5.977635 ACATTGATCTTACACGGAGATTCA 58.022 37.500 0.00 0.00 34.13 2.57
676 679 6.980978 AGACTTATGACATTGATCTTACACGG 59.019 38.462 0.00 0.00 0.00 4.94
684 687 8.494347 GCACATCTAAGACTTATGACATTGATC 58.506 37.037 5.19 0.00 0.00 2.92
685 688 7.989170 TGCACATCTAAGACTTATGACATTGAT 59.011 33.333 5.19 0.00 0.00 2.57
687 690 7.543947 TGCACATCTAAGACTTATGACATTG 57.456 36.000 5.19 0.00 0.00 2.82
689 692 9.265901 GTATTGCACATCTAAGACTTATGACAT 57.734 33.333 5.19 0.00 0.00 3.06
690 693 8.478066 AGTATTGCACATCTAAGACTTATGACA 58.522 33.333 5.19 1.33 0.00 3.58
691 694 8.879342 AGTATTGCACATCTAAGACTTATGAC 57.121 34.615 5.19 0.00 0.00 3.06
699 702 6.591001 TGCCATAAGTATTGCACATCTAAGA 58.409 36.000 0.00 0.00 30.49 2.10
771 774 3.379688 GGCAAATTGTCAAAGCCCAAAAA 59.620 39.130 13.31 0.00 39.42 1.94
778 781 4.243007 ACTAGTGGCAAATTGTCAAAGC 57.757 40.909 0.31 0.00 31.67 3.51
779 782 6.970484 AGTAACTAGTGGCAAATTGTCAAAG 58.030 36.000 0.31 5.77 31.67 2.77
828 832 6.811665 GGGCAAAATATCAAAGTCCAAACTAC 59.188 38.462 0.00 0.00 33.48 2.73
855 859 0.181587 ATGTGGACCCAACGTGACAA 59.818 50.000 0.00 0.00 0.00 3.18
864 868 4.659529 TTGGTAATTGTATGTGGACCCA 57.340 40.909 0.00 0.00 0.00 4.51
872 876 6.462347 GGCAGGGGTATTTTGGTAATTGTATG 60.462 42.308 0.00 0.00 0.00 2.39
885 889 2.187100 CAAATGTGGGCAGGGGTATTT 58.813 47.619 0.00 0.00 0.00 1.40
900 904 2.738846 CTCTCCTGTTCGTGGTCAAATG 59.261 50.000 0.00 0.00 0.00 2.32
901 905 2.872038 GCTCTCCTGTTCGTGGTCAAAT 60.872 50.000 0.00 0.00 0.00 2.32
910 914 2.578178 CTCGCGCTCTCCTGTTCG 60.578 66.667 5.56 0.00 0.00 3.95
913 917 3.137459 CCTCTCGCGCTCTCCTGT 61.137 66.667 5.56 0.00 0.00 4.00
931 935 0.250234 TGCGAGACAAAGGGGATGAG 59.750 55.000 0.00 0.00 0.00 2.90
948 952 4.719369 AGAACGAGCGACCCGTGC 62.719 66.667 0.00 0.00 40.44 5.34
952 956 1.227002 GGATGAGAACGAGCGACCC 60.227 63.158 0.00 0.00 0.00 4.46
964 968 2.136878 CAGGGACGAGGGGGATGAG 61.137 68.421 0.00 0.00 0.00 2.90
1008 1012 1.511768 GTCGAGGTGGACCAGTAGC 59.488 63.158 0.00 0.00 38.89 3.58
1034 1038 1.124477 CCCAGGAGATAGACCAGGGC 61.124 65.000 0.00 0.00 44.90 5.19
1039 1043 0.178987 TCGAGCCCAGGAGATAGACC 60.179 60.000 0.00 0.00 0.00 3.85
1044 1048 1.687146 TTGCTCGAGCCCAGGAGAT 60.687 57.895 33.23 0.00 41.18 2.75
1070 1074 0.955919 GACGACCTTCAAGGCTTGGG 60.956 60.000 25.92 21.45 39.63 4.12
1073 1077 2.453242 AGGACGACCTTCAAGGCTT 58.547 52.632 2.20 0.00 45.36 4.35
1085 1089 1.674651 CTCCCGACAGTGAGGACGA 60.675 63.158 10.26 1.17 0.00 4.20
1093 1097 2.680352 ACCGATGCTCCCGACAGT 60.680 61.111 0.00 0.00 0.00 3.55
1094 1098 2.202797 CACCGATGCTCCCGACAG 60.203 66.667 0.00 0.00 0.00 3.51
1106 1110 1.587043 CGTCCTCTCTGCTTCACCGA 61.587 60.000 0.00 0.00 0.00 4.69
1176 1180 2.959707 ACCAGCTAGAGTGCTATACCAC 59.040 50.000 0.00 0.00 41.98 4.16
1225 1229 1.551019 GGTGCTTCCCCGACTACCTT 61.551 60.000 0.00 0.00 0.00 3.50
1227 1231 1.623542 ATGGTGCTTCCCCGACTACC 61.624 60.000 0.00 0.00 34.77 3.18
1232 1236 4.424711 GCCATGGTGCTTCCCCGA 62.425 66.667 14.67 0.00 34.77 5.14
1254 1258 2.857744 CGGGGAGTAGCGGATGGAC 61.858 68.421 0.00 0.00 0.00 4.02
1274 1278 2.671070 GAGCTACTTGGGCTGGCA 59.329 61.111 2.88 0.00 40.40 4.92
1275 1279 2.124529 GGAGCTACTTGGGCTGGC 60.125 66.667 0.00 0.00 40.40 4.85
1313 1317 0.245266 TGTGTCCGCGATTGCTTCTA 59.755 50.000 8.23 0.00 39.65 2.10
1330 1334 1.617850 GGATGAGCTCGAGATCCATGT 59.382 52.381 26.63 10.97 36.43 3.21
1355 1359 0.548031 CTCCTTTGCTATGCCTCCCA 59.452 55.000 0.00 0.00 0.00 4.37
1363 1367 3.884091 ACGAGTACGATCTCCTTTGCTAT 59.116 43.478 0.00 0.00 42.66 2.97
1369 1373 1.402259 CTGCACGAGTACGATCTCCTT 59.598 52.381 0.00 0.00 42.66 3.36
1385 1389 1.761174 GTCCTTTCTCCCACCTGCA 59.239 57.895 0.00 0.00 0.00 4.41
1391 1395 2.168496 CTAGTGTCGTCCTTTCTCCCA 58.832 52.381 0.00 0.00 0.00 4.37
1405 1409 0.889306 GTCTCGGTCCTTGCTAGTGT 59.111 55.000 0.00 0.00 0.00 3.55
1409 1413 3.599584 CCGTCTCGGTCCTTGCTA 58.400 61.111 0.00 0.00 42.73 3.49
1424 1428 3.049674 ACTGCATGGACGTTGCCG 61.050 61.111 8.16 4.59 39.39 5.69
1425 1429 2.562912 CACTGCATGGACGTTGCC 59.437 61.111 8.16 0.00 39.39 4.52
1499 1503 2.104859 CGCCTCCGTGACGACTCTA 61.105 63.158 6.54 0.00 0.00 2.43
1577 1581 0.100682 AATGTCGTCATCTCGGTCCG 59.899 55.000 4.39 4.39 32.56 4.79
1622 1652 0.960364 CCTCCACCATTGAACCACGG 60.960 60.000 0.00 0.00 0.00 4.94
1633 1663 2.449518 TTGTGCCCTCCTCCACCA 60.450 61.111 0.00 0.00 0.00 4.17
1649 1679 3.523681 AACCAGCCTCCTCCCCCTT 62.524 63.158 0.00 0.00 0.00 3.95
1651 1681 0.994050 ATAAACCAGCCTCCTCCCCC 60.994 60.000 0.00 0.00 0.00 5.40
1652 1682 0.927029 AATAAACCAGCCTCCTCCCC 59.073 55.000 0.00 0.00 0.00 4.81
1653 1683 2.828661 AAATAAACCAGCCTCCTCCC 57.171 50.000 0.00 0.00 0.00 4.30
1707 1737 5.847111 AATGTATGCACAAATCAGCAGAT 57.153 34.783 0.00 0.00 44.94 2.90
1753 1783 9.777297 ATCTTTTGCCACTTTATAACACAAAAT 57.223 25.926 0.00 0.00 35.65 1.82
1765 1795 6.478512 TGGACTTTAATCTTTTGCCACTTT 57.521 33.333 0.00 0.00 0.00 2.66
1779 1809 5.652891 TGCCACAACTTAGTTTGGACTTTAA 59.347 36.000 21.61 5.22 37.33 1.52
1782 1812 3.626930 TGCCACAACTTAGTTTGGACTT 58.373 40.909 21.61 0.00 37.33 3.01
1807 1837 8.630054 TGCCACTACTTACTTTGTAATTGATT 57.370 30.769 0.00 0.00 0.00 2.57
1837 1867 7.676947 TGCCACTACTTACTTTAGACTTTGAT 58.323 34.615 0.00 0.00 0.00 2.57
1881 1911 1.606668 TCACACTTGTGCCGAAAATCC 59.393 47.619 4.38 0.00 45.25 3.01
1889 1919 1.264288 GCTACTTGTCACACTTGTGCC 59.736 52.381 4.38 0.00 45.25 5.01
2044 2074 1.995066 GGGCAAAAGGGAATGGGGG 60.995 63.158 0.00 0.00 0.00 5.40
2045 2075 1.080907 AGGGCAAAAGGGAATGGGG 59.919 57.895 0.00 0.00 0.00 4.96
2046 2076 1.902765 GCAGGGCAAAAGGGAATGGG 61.903 60.000 0.00 0.00 0.00 4.00
2047 2077 0.906282 AGCAGGGCAAAAGGGAATGG 60.906 55.000 0.00 0.00 0.00 3.16
2048 2078 1.478105 GTAGCAGGGCAAAAGGGAATG 59.522 52.381 0.00 0.00 0.00 2.67
2049 2079 1.077005 TGTAGCAGGGCAAAAGGGAAT 59.923 47.619 0.00 0.00 0.00 3.01
2050 2080 0.480690 TGTAGCAGGGCAAAAGGGAA 59.519 50.000 0.00 0.00 0.00 3.97
2051 2081 0.038166 CTGTAGCAGGGCAAAAGGGA 59.962 55.000 0.00 0.00 0.00 4.20
2052 2082 2.571548 CTGTAGCAGGGCAAAAGGG 58.428 57.895 0.00 0.00 0.00 3.95
2065 2095 2.103143 CCTCACGCGCTCCTGTAG 59.897 66.667 5.73 0.00 0.00 2.74
2066 2096 2.360726 TCCTCACGCGCTCCTGTA 60.361 61.111 5.73 0.00 0.00 2.74
2067 2097 3.753434 CTCCTCACGCGCTCCTGT 61.753 66.667 5.73 0.00 0.00 4.00
2068 2098 3.443925 TCTCCTCACGCGCTCCTG 61.444 66.667 5.73 0.00 0.00 3.86
2069 2099 3.444805 GTCTCCTCACGCGCTCCT 61.445 66.667 5.73 0.00 0.00 3.69
2070 2100 4.500116 GGTCTCCTCACGCGCTCC 62.500 72.222 5.73 0.00 0.00 4.70
2071 2101 4.500116 GGGTCTCCTCACGCGCTC 62.500 72.222 5.73 0.00 0.00 5.03
2074 2104 3.633094 CTGTGGGTCTCCTCACGCG 62.633 68.421 3.53 3.53 36.74 6.01
2075 2105 2.262915 CTGTGGGTCTCCTCACGC 59.737 66.667 0.00 0.00 36.74 5.34
2076 2106 1.908793 ACCTGTGGGTCTCCTCACG 60.909 63.158 0.00 0.00 43.38 4.35
2077 2107 4.217112 ACCTGTGGGTCTCCTCAC 57.783 61.111 0.00 0.00 43.38 3.51
2092 2122 2.036089 CCGAAAGATAGCCAGGTAGACC 59.964 54.545 0.00 0.00 0.00 3.85
2093 2123 2.036089 CCCGAAAGATAGCCAGGTAGAC 59.964 54.545 0.00 0.00 0.00 2.59
2094 2124 2.317040 CCCGAAAGATAGCCAGGTAGA 58.683 52.381 0.00 0.00 0.00 2.59
2095 2125 2.036089 GACCCGAAAGATAGCCAGGTAG 59.964 54.545 0.00 0.00 0.00 3.18
2096 2126 2.037144 GACCCGAAAGATAGCCAGGTA 58.963 52.381 0.00 0.00 0.00 3.08
2097 2127 0.831307 GACCCGAAAGATAGCCAGGT 59.169 55.000 0.00 0.00 0.00 4.00
2098 2128 0.249489 CGACCCGAAAGATAGCCAGG 60.249 60.000 0.00 0.00 0.00 4.45
2099 2129 0.249489 CCGACCCGAAAGATAGCCAG 60.249 60.000 0.00 0.00 0.00 4.85
2100 2130 1.682451 CCCGACCCGAAAGATAGCCA 61.682 60.000 0.00 0.00 0.00 4.75
2101 2131 1.069258 CCCGACCCGAAAGATAGCC 59.931 63.158 0.00 0.00 0.00 3.93
2102 2132 1.594564 GCCCGACCCGAAAGATAGC 60.595 63.158 0.00 0.00 0.00 2.97
2103 2133 0.393077 ATGCCCGACCCGAAAGATAG 59.607 55.000 0.00 0.00 0.00 2.08
2104 2134 0.105964 CATGCCCGACCCGAAAGATA 59.894 55.000 0.00 0.00 0.00 1.98
2105 2135 1.153168 CATGCCCGACCCGAAAGAT 60.153 57.895 0.00 0.00 0.00 2.40
2106 2136 2.267642 CATGCCCGACCCGAAAGA 59.732 61.111 0.00 0.00 0.00 2.52
2107 2137 3.508840 GCATGCCCGACCCGAAAG 61.509 66.667 6.36 0.00 0.00 2.62
2112 2142 3.451894 CTTTGGCATGCCCGACCC 61.452 66.667 33.44 8.41 35.87 4.46
2113 2143 4.133796 GCTTTGGCATGCCCGACC 62.134 66.667 33.44 15.73 38.54 4.79
2114 2144 4.133796 GGCTTTGGCATGCCCGAC 62.134 66.667 33.44 20.08 43.11 4.79
2119 2149 3.372730 TGTCGGGCTTTGGCATGC 61.373 61.111 9.90 9.90 40.87 4.06
2120 2150 2.203972 CTGTGTCGGGCTTTGGCATG 62.204 60.000 0.00 0.00 40.87 4.06
2121 2151 1.973281 CTGTGTCGGGCTTTGGCAT 60.973 57.895 0.00 0.00 40.87 4.40
2122 2152 2.594303 CTGTGTCGGGCTTTGGCA 60.594 61.111 0.00 0.00 40.87 4.92
2123 2153 1.452145 TTTCTGTGTCGGGCTTTGGC 61.452 55.000 0.00 0.00 37.82 4.52
2124 2154 1.028905 TTTTCTGTGTCGGGCTTTGG 58.971 50.000 0.00 0.00 0.00 3.28
2125 2155 1.269051 GGTTTTCTGTGTCGGGCTTTG 60.269 52.381 0.00 0.00 0.00 2.77
2126 2156 1.029681 GGTTTTCTGTGTCGGGCTTT 58.970 50.000 0.00 0.00 0.00 3.51
2127 2157 0.182775 AGGTTTTCTGTGTCGGGCTT 59.817 50.000 0.00 0.00 0.00 4.35
2128 2158 0.535102 CAGGTTTTCTGTGTCGGGCT 60.535 55.000 0.00 0.00 38.64 5.19
2129 2159 1.515521 CCAGGTTTTCTGTGTCGGGC 61.516 60.000 0.00 0.00 41.83 6.13
2130 2160 0.889186 CCCAGGTTTTCTGTGTCGGG 60.889 60.000 0.00 0.00 41.83 5.14
2131 2161 1.515521 GCCCAGGTTTTCTGTGTCGG 61.516 60.000 0.00 0.00 41.83 4.79
2132 2162 1.515521 GGCCCAGGTTTTCTGTGTCG 61.516 60.000 0.00 0.00 41.83 4.35
2133 2163 0.178990 AGGCCCAGGTTTTCTGTGTC 60.179 55.000 0.00 0.00 41.83 3.67
2134 2164 1.145571 TAGGCCCAGGTTTTCTGTGT 58.854 50.000 0.00 0.00 41.83 3.72
2135 2165 2.162681 CTTAGGCCCAGGTTTTCTGTG 58.837 52.381 0.00 0.00 41.83 3.66
2136 2166 1.547901 GCTTAGGCCCAGGTTTTCTGT 60.548 52.381 0.00 0.00 41.83 3.41
2137 2167 1.177401 GCTTAGGCCCAGGTTTTCTG 58.823 55.000 0.00 0.00 43.00 3.02
2138 2168 3.672066 GCTTAGGCCCAGGTTTTCT 57.328 52.632 0.00 0.00 0.00 2.52
2171 2201 1.039856 CCCAATTTTAGGCCCGATGG 58.960 55.000 0.00 0.00 0.00 3.51
2172 2202 0.389025 GCCCAATTTTAGGCCCGATG 59.611 55.000 0.00 0.00 43.76 3.84
2173 2203 2.820845 GCCCAATTTTAGGCCCGAT 58.179 52.632 0.00 0.00 43.76 4.18
2174 2204 4.347865 GCCCAATTTTAGGCCCGA 57.652 55.556 0.00 0.00 43.76 5.14
2190 2220 2.514824 GATGGGTCGGGCTTGAGC 60.515 66.667 0.00 0.00 41.14 4.26
2191 2221 1.450312 GTGATGGGTCGGGCTTGAG 60.450 63.158 0.00 0.00 0.00 3.02
2192 2222 1.899437 GAGTGATGGGTCGGGCTTGA 61.899 60.000 0.00 0.00 0.00 3.02
2193 2223 1.450312 GAGTGATGGGTCGGGCTTG 60.450 63.158 0.00 0.00 0.00 4.01
2194 2224 1.488705 TTGAGTGATGGGTCGGGCTT 61.489 55.000 0.00 0.00 0.00 4.35
2195 2225 1.488705 TTTGAGTGATGGGTCGGGCT 61.489 55.000 0.00 0.00 0.00 5.19
2196 2226 1.002624 TTTGAGTGATGGGTCGGGC 60.003 57.895 0.00 0.00 0.00 6.13
2197 2227 0.613260 TCTTTGAGTGATGGGTCGGG 59.387 55.000 0.00 0.00 0.00 5.14
2198 2228 2.350522 CTTCTTTGAGTGATGGGTCGG 58.649 52.381 0.00 0.00 0.00 4.79
2199 2229 1.734465 GCTTCTTTGAGTGATGGGTCG 59.266 52.381 0.00 0.00 0.00 4.79
2200 2230 2.087646 GGCTTCTTTGAGTGATGGGTC 58.912 52.381 0.00 0.00 0.00 4.46
2201 2231 1.272147 GGGCTTCTTTGAGTGATGGGT 60.272 52.381 0.00 0.00 0.00 4.51
2202 2232 1.467920 GGGCTTCTTTGAGTGATGGG 58.532 55.000 0.00 0.00 0.00 4.00
2203 2233 1.089920 CGGGCTTCTTTGAGTGATGG 58.910 55.000 0.00 0.00 0.00 3.51
2204 2234 1.734465 GTCGGGCTTCTTTGAGTGATG 59.266 52.381 0.00 0.00 0.00 3.07
2205 2235 1.347707 TGTCGGGCTTCTTTGAGTGAT 59.652 47.619 0.00 0.00 0.00 3.06
2206 2236 0.756294 TGTCGGGCTTCTTTGAGTGA 59.244 50.000 0.00 0.00 0.00 3.41
2207 2237 1.466167 CATGTCGGGCTTCTTTGAGTG 59.534 52.381 0.00 0.00 0.00 3.51
2208 2238 1.072331 ACATGTCGGGCTTCTTTGAGT 59.928 47.619 0.00 0.00 0.00 3.41
2209 2239 1.734465 GACATGTCGGGCTTCTTTGAG 59.266 52.381 10.69 0.00 0.00 3.02
2210 2240 1.347707 AGACATGTCGGGCTTCTTTGA 59.652 47.619 19.85 0.00 34.09 2.69
2211 2241 1.813513 AGACATGTCGGGCTTCTTTG 58.186 50.000 19.85 0.00 34.09 2.77
2212 2242 2.154462 CAAGACATGTCGGGCTTCTTT 58.846 47.619 19.85 3.65 34.09 2.52
2213 2243 1.611673 CCAAGACATGTCGGGCTTCTT 60.612 52.381 21.54 7.40 34.09 2.52
2214 2244 0.036010 CCAAGACATGTCGGGCTTCT 60.036 55.000 21.54 1.64 34.09 2.85
2215 2245 1.026718 CCCAAGACATGTCGGGCTTC 61.027 60.000 25.56 2.69 34.09 3.86
2216 2246 1.002134 CCCAAGACATGTCGGGCTT 60.002 57.895 25.56 11.91 34.09 4.35
2217 2247 2.671070 CCCAAGACATGTCGGGCT 59.329 61.111 25.56 6.77 34.09 5.19
2219 2249 2.438434 GGCCCAAGACATGTCGGG 60.438 66.667 26.41 26.41 42.03 5.14
2220 2250 2.233605 TACGGCCCAAGACATGTCGG 62.234 60.000 19.85 15.83 34.09 4.79
2221 2251 0.806102 CTACGGCCCAAGACATGTCG 60.806 60.000 19.85 9.58 34.09 4.35
2222 2252 0.535335 TCTACGGCCCAAGACATGTC 59.465 55.000 18.47 18.47 0.00 3.06
2223 2253 0.249398 GTCTACGGCCCAAGACATGT 59.751 55.000 21.67 0.00 41.46 3.21
2224 2254 0.537188 AGTCTACGGCCCAAGACATG 59.463 55.000 26.05 2.07 43.74 3.21
2225 2255 0.537188 CAGTCTACGGCCCAAGACAT 59.463 55.000 26.05 13.44 43.74 3.06
2226 2256 1.541310 CCAGTCTACGGCCCAAGACA 61.541 60.000 26.05 0.00 43.74 3.41
2227 2257 1.218316 CCAGTCTACGGCCCAAGAC 59.782 63.158 19.85 19.85 42.02 3.01
2228 2258 1.987855 CCCAGTCTACGGCCCAAGA 60.988 63.158 0.00 0.00 0.00 3.02
2229 2259 2.584608 CCCAGTCTACGGCCCAAG 59.415 66.667 0.00 0.00 0.00 3.61
2230 2260 3.712907 GCCCAGTCTACGGCCCAA 61.713 66.667 0.00 0.00 39.39 4.12
2234 2264 2.299503 GAAGAGGCCCAGTCTACGGC 62.300 65.000 0.00 2.07 44.92 5.68
2235 2265 1.677637 GGAAGAGGCCCAGTCTACGG 61.678 65.000 0.00 0.00 0.00 4.02
2236 2266 0.684805 AGGAAGAGGCCCAGTCTACG 60.685 60.000 0.00 0.00 0.00 3.51
2237 2267 1.574263 AAGGAAGAGGCCCAGTCTAC 58.426 55.000 0.00 0.00 0.00 2.59
2238 2268 3.484953 TTAAGGAAGAGGCCCAGTCTA 57.515 47.619 0.00 0.00 0.00 2.59
2239 2269 2.306219 GTTTAAGGAAGAGGCCCAGTCT 59.694 50.000 0.00 0.00 0.00 3.24
2240 2270 2.306219 AGTTTAAGGAAGAGGCCCAGTC 59.694 50.000 0.00 0.00 0.00 3.51
2241 2271 2.040412 CAGTTTAAGGAAGAGGCCCAGT 59.960 50.000 0.00 0.00 0.00 4.00
2242 2272 2.716217 CAGTTTAAGGAAGAGGCCCAG 58.284 52.381 0.00 0.00 0.00 4.45
2243 2273 1.271926 GCAGTTTAAGGAAGAGGCCCA 60.272 52.381 0.00 0.00 0.00 5.36
2244 2274 1.271926 TGCAGTTTAAGGAAGAGGCCC 60.272 52.381 0.00 0.00 0.00 5.80
2245 2275 2.200373 TGCAGTTTAAGGAAGAGGCC 57.800 50.000 0.00 0.00 0.00 5.19
2246 2276 4.790765 ATTTGCAGTTTAAGGAAGAGGC 57.209 40.909 0.00 0.00 0.00 4.70
2247 2277 5.642063 TCGTATTTGCAGTTTAAGGAAGAGG 59.358 40.000 0.00 0.00 0.00 3.69
2248 2278 6.534934 GTCGTATTTGCAGTTTAAGGAAGAG 58.465 40.000 0.00 0.00 0.00 2.85
2249 2279 5.119588 CGTCGTATTTGCAGTTTAAGGAAGA 59.880 40.000 0.00 0.00 0.00 2.87
2250 2280 5.313623 CGTCGTATTTGCAGTTTAAGGAAG 58.686 41.667 0.00 0.00 0.00 3.46
2251 2281 4.152759 CCGTCGTATTTGCAGTTTAAGGAA 59.847 41.667 0.00 0.00 0.00 3.36
2252 2282 3.680937 CCGTCGTATTTGCAGTTTAAGGA 59.319 43.478 0.00 0.00 0.00 3.36
2253 2283 3.181514 CCCGTCGTATTTGCAGTTTAAGG 60.182 47.826 0.00 0.00 0.00 2.69
2254 2284 3.726782 GCCCGTCGTATTTGCAGTTTAAG 60.727 47.826 0.00 0.00 0.00 1.85
2255 2285 2.160022 GCCCGTCGTATTTGCAGTTTAA 59.840 45.455 0.00 0.00 0.00 1.52
2256 2286 1.733360 GCCCGTCGTATTTGCAGTTTA 59.267 47.619 0.00 0.00 0.00 2.01
2257 2287 0.519961 GCCCGTCGTATTTGCAGTTT 59.480 50.000 0.00 0.00 0.00 2.66
2258 2288 1.303091 GGCCCGTCGTATTTGCAGTT 61.303 55.000 0.00 0.00 0.00 3.16
2259 2289 1.743995 GGCCCGTCGTATTTGCAGT 60.744 57.895 0.00 0.00 0.00 4.40
2260 2290 2.469516 GGGCCCGTCGTATTTGCAG 61.470 63.158 5.69 0.00 0.00 4.41
2261 2291 2.437002 GGGCCCGTCGTATTTGCA 60.437 61.111 5.69 0.00 0.00 4.08
2262 2292 3.569690 CGGGCCCGTCGTATTTGC 61.570 66.667 36.64 0.00 34.35 3.68
2263 2293 1.881252 CTCGGGCCCGTCGTATTTG 60.881 63.158 41.57 18.67 40.74 2.32
2264 2294 2.497770 CTCGGGCCCGTCGTATTT 59.502 61.111 41.57 0.00 40.74 1.40
2265 2295 4.217159 GCTCGGGCCCGTCGTATT 62.217 66.667 41.57 0.00 40.74 1.89
2275 2305 2.027751 GACGTATCAGGCTCGGGC 59.972 66.667 0.00 0.00 37.82 6.13
2276 2306 1.464376 ATGGACGTATCAGGCTCGGG 61.464 60.000 0.00 0.00 0.00 5.14
2277 2307 0.389391 AATGGACGTATCAGGCTCGG 59.611 55.000 0.00 0.00 0.00 4.63
2278 2308 2.225068 AAATGGACGTATCAGGCTCG 57.775 50.000 0.00 0.00 0.00 5.03
2279 2309 2.032178 GCAAAATGGACGTATCAGGCTC 59.968 50.000 0.00 0.00 0.00 4.70
2280 2310 2.017049 GCAAAATGGACGTATCAGGCT 58.983 47.619 0.00 0.00 0.00 4.58
2281 2311 1.742831 TGCAAAATGGACGTATCAGGC 59.257 47.619 0.00 0.00 0.00 4.85
2282 2312 3.627123 TGATGCAAAATGGACGTATCAGG 59.373 43.478 0.00 0.00 29.90 3.86
2283 2313 4.880886 TGATGCAAAATGGACGTATCAG 57.119 40.909 0.00 0.00 29.90 2.90
2284 2314 4.497842 GCATGATGCAAAATGGACGTATCA 60.498 41.667 13.36 0.00 44.26 2.15
2285 2315 3.976942 GCATGATGCAAAATGGACGTATC 59.023 43.478 13.36 0.00 44.26 2.24
2286 2316 3.968649 GCATGATGCAAAATGGACGTAT 58.031 40.909 13.36 0.00 44.26 3.06
2287 2317 3.419264 GCATGATGCAAAATGGACGTA 57.581 42.857 13.36 0.00 44.26 3.57
2288 2318 2.282701 GCATGATGCAAAATGGACGT 57.717 45.000 13.36 0.00 44.26 4.34
2323 2353 9.336171 TGTGTAATAACAGCTCATAATGCAATA 57.664 29.630 0.00 0.00 35.91 1.90
2324 2354 8.224389 TGTGTAATAACAGCTCATAATGCAAT 57.776 30.769 0.00 0.00 35.91 3.56
2325 2355 7.622893 TGTGTAATAACAGCTCATAATGCAA 57.377 32.000 0.00 0.00 35.91 4.08
2326 2356 7.806409 ATGTGTAATAACAGCTCATAATGCA 57.194 32.000 0.00 0.00 35.91 3.96
2332 2362 8.830580 GTGACATAATGTGTAATAACAGCTCAT 58.169 33.333 0.00 0.00 42.36 2.90
2333 2363 7.821846 TGTGACATAATGTGTAATAACAGCTCA 59.178 33.333 0.00 0.00 42.36 4.26
2334 2364 8.196802 TGTGACATAATGTGTAATAACAGCTC 57.803 34.615 0.00 0.00 42.36 4.09
2335 2365 8.560355 TTGTGACATAATGTGTAATAACAGCT 57.440 30.769 0.00 0.00 42.36 4.24
2344 2374 9.051679 GGCATAAGTATTGTGACATAATGTGTA 57.948 33.333 7.62 0.00 45.57 2.90
2345 2375 7.930217 GGCATAAGTATTGTGACATAATGTGT 58.070 34.615 7.62 0.00 45.57 3.72
2354 2384 8.364142 AGAGAGAATAGGCATAAGTATTGTGAC 58.636 37.037 0.00 0.00 46.78 3.67
2355 2385 8.484214 AGAGAGAATAGGCATAAGTATTGTGA 57.516 34.615 0.00 0.00 39.84 3.58
2367 2397 9.959721 AACTTGTAAAATAAGAGAGAATAGGCA 57.040 29.630 0.00 0.00 0.00 4.75
2387 2417 9.014297 CATTCTCCCTCTTTATGTAAAACTTGT 57.986 33.333 0.00 0.00 0.00 3.16
2388 2418 7.970614 GCATTCTCCCTCTTTATGTAAAACTTG 59.029 37.037 0.00 0.00 0.00 3.16
2389 2419 7.122799 GGCATTCTCCCTCTTTATGTAAAACTT 59.877 37.037 0.00 0.00 0.00 2.66
2390 2420 6.603599 GGCATTCTCCCTCTTTATGTAAAACT 59.396 38.462 0.00 0.00 0.00 2.66
2391 2421 6.458342 CGGCATTCTCCCTCTTTATGTAAAAC 60.458 42.308 0.00 0.00 0.00 2.43
2392 2422 5.588648 CGGCATTCTCCCTCTTTATGTAAAA 59.411 40.000 0.00 0.00 0.00 1.52
2393 2423 5.123227 CGGCATTCTCCCTCTTTATGTAAA 58.877 41.667 0.00 0.00 0.00 2.01
2394 2424 4.444306 CCGGCATTCTCCCTCTTTATGTAA 60.444 45.833 0.00 0.00 0.00 2.41
2395 2425 3.071023 CCGGCATTCTCCCTCTTTATGTA 59.929 47.826 0.00 0.00 0.00 2.29
2396 2426 2.158755 CCGGCATTCTCCCTCTTTATGT 60.159 50.000 0.00 0.00 0.00 2.29
2397 2427 2.498167 CCGGCATTCTCCCTCTTTATG 58.502 52.381 0.00 0.00 0.00 1.90
2398 2428 1.202818 GCCGGCATTCTCCCTCTTTAT 60.203 52.381 24.80 0.00 0.00 1.40
2399 2429 0.180406 GCCGGCATTCTCCCTCTTTA 59.820 55.000 24.80 0.00 0.00 1.85
2400 2430 1.077429 GCCGGCATTCTCCCTCTTT 60.077 57.895 24.80 0.00 0.00 2.52
2401 2431 2.262774 CTGCCGGCATTCTCCCTCTT 62.263 60.000 32.87 0.00 0.00 2.85
2402 2432 2.688666 TGCCGGCATTCTCCCTCT 60.689 61.111 29.03 0.00 0.00 3.69
2403 2433 2.203126 CTGCCGGCATTCTCCCTC 60.203 66.667 32.87 0.00 0.00 4.30
2404 2434 4.496336 GCTGCCGGCATTCTCCCT 62.496 66.667 32.87 0.00 41.35 4.20
2405 2435 4.496336 AGCTGCCGGCATTCTCCC 62.496 66.667 32.87 13.85 44.79 4.30
2406 2436 3.207669 CAGCTGCCGGCATTCTCC 61.208 66.667 32.87 15.69 44.79 3.71
2407 2437 3.207669 CCAGCTGCCGGCATTCTC 61.208 66.667 32.87 18.90 44.79 2.87
2408 2438 4.809496 CCCAGCTGCCGGCATTCT 62.809 66.667 32.87 26.10 44.79 2.40
2409 2439 4.802051 TCCCAGCTGCCGGCATTC 62.802 66.667 32.87 24.20 44.79 2.67
2410 2440 3.667217 AATCCCAGCTGCCGGCATT 62.667 57.895 32.87 19.15 44.79 3.56
2411 2441 4.133373 AATCCCAGCTGCCGGCAT 62.133 61.111 32.87 14.47 44.79 4.40
2412 2442 4.802051 GAATCCCAGCTGCCGGCA 62.802 66.667 30.59 30.59 44.79 5.69
2413 2443 4.496336 AGAATCCCAGCTGCCGGC 62.496 66.667 22.73 22.73 42.19 6.13
2414 2444 2.515523 CAGAATCCCAGCTGCCGG 60.516 66.667 8.66 5.30 0.00 6.13
2415 2445 2.515523 CCAGAATCCCAGCTGCCG 60.516 66.667 8.66 0.00 0.00 5.69
2416 2446 2.832201 GCCAGAATCCCAGCTGCC 60.832 66.667 8.66 0.00 0.00 4.85
2417 2447 2.119655 CAGCCAGAATCCCAGCTGC 61.120 63.158 8.66 0.00 45.44 5.25
2418 2448 4.237445 CAGCCAGAATCCCAGCTG 57.763 61.111 6.78 6.78 45.92 4.24
2419 2449 1.210204 TTCCAGCCAGAATCCCAGCT 61.210 55.000 0.00 0.00 35.52 4.24
2420 2450 0.323725 TTTCCAGCCAGAATCCCAGC 60.324 55.000 0.00 0.00 0.00 4.85
2421 2451 2.097825 CTTTTCCAGCCAGAATCCCAG 58.902 52.381 0.00 0.00 0.00 4.45
2422 2452 1.272648 CCTTTTCCAGCCAGAATCCCA 60.273 52.381 0.00 0.00 0.00 4.37
2423 2453 1.005924 TCCTTTTCCAGCCAGAATCCC 59.994 52.381 0.00 0.00 0.00 3.85
2424 2454 2.373224 CTCCTTTTCCAGCCAGAATCC 58.627 52.381 0.00 0.00 0.00 3.01
2425 2455 1.747924 GCTCCTTTTCCAGCCAGAATC 59.252 52.381 0.00 0.00 0.00 2.52
2426 2456 1.076024 TGCTCCTTTTCCAGCCAGAAT 59.924 47.619 0.00 0.00 34.47 2.40
2427 2457 0.478072 TGCTCCTTTTCCAGCCAGAA 59.522 50.000 0.00 0.00 34.47 3.02
2428 2458 0.478072 TTGCTCCTTTTCCAGCCAGA 59.522 50.000 0.00 0.00 34.47 3.86
2429 2459 1.331214 TTTGCTCCTTTTCCAGCCAG 58.669 50.000 0.00 0.00 34.47 4.85
2430 2460 2.014010 ATTTGCTCCTTTTCCAGCCA 57.986 45.000 0.00 0.00 34.47 4.75
2431 2461 4.743057 AATATTTGCTCCTTTTCCAGCC 57.257 40.909 0.00 0.00 34.47 4.85
2432 2462 6.543831 TCTCTAATATTTGCTCCTTTTCCAGC 59.456 38.462 0.00 0.00 36.08 4.85
2433 2463 7.012799 GGTCTCTAATATTTGCTCCTTTTCCAG 59.987 40.741 0.00 0.00 0.00 3.86
2434 2464 6.828785 GGTCTCTAATATTTGCTCCTTTTCCA 59.171 38.462 0.00 0.00 0.00 3.53
2435 2465 7.057264 AGGTCTCTAATATTTGCTCCTTTTCC 58.943 38.462 0.00 0.00 0.00 3.13
2436 2466 9.785982 ATAGGTCTCTAATATTTGCTCCTTTTC 57.214 33.333 0.00 0.00 0.00 2.29
2438 2468 9.785982 GAATAGGTCTCTAATATTTGCTCCTTT 57.214 33.333 0.00 0.00 0.00 3.11
2439 2469 8.938883 TGAATAGGTCTCTAATATTTGCTCCTT 58.061 33.333 0.00 0.00 0.00 3.36
2440 2470 8.497910 TGAATAGGTCTCTAATATTTGCTCCT 57.502 34.615 0.00 3.47 0.00 3.69
2441 2471 7.333174 GCTGAATAGGTCTCTAATATTTGCTCC 59.667 40.741 0.00 0.00 0.00 4.70
2442 2472 7.875041 TGCTGAATAGGTCTCTAATATTTGCTC 59.125 37.037 0.00 0.00 0.00 4.26
2443 2473 7.659390 GTGCTGAATAGGTCTCTAATATTTGCT 59.341 37.037 0.00 0.00 0.00 3.91
2444 2474 7.442364 TGTGCTGAATAGGTCTCTAATATTTGC 59.558 37.037 0.00 0.00 0.00 3.68
2445 2475 8.893219 TGTGCTGAATAGGTCTCTAATATTTG 57.107 34.615 0.00 0.00 0.00 2.32
2446 2476 7.659390 GCTGTGCTGAATAGGTCTCTAATATTT 59.341 37.037 0.00 0.00 0.00 1.40
2447 2477 7.016072 AGCTGTGCTGAATAGGTCTCTAATATT 59.984 37.037 0.00 0.00 37.57 1.28
2448 2478 6.496565 AGCTGTGCTGAATAGGTCTCTAATAT 59.503 38.462 0.00 0.00 37.57 1.28
2449 2479 5.835819 AGCTGTGCTGAATAGGTCTCTAATA 59.164 40.000 0.00 0.00 37.57 0.98
2450 2480 4.653341 AGCTGTGCTGAATAGGTCTCTAAT 59.347 41.667 0.00 0.00 37.57 1.73
2451 2481 4.026744 AGCTGTGCTGAATAGGTCTCTAA 58.973 43.478 0.00 0.00 37.57 2.10
2452 2482 3.634448 GAGCTGTGCTGAATAGGTCTCTA 59.366 47.826 4.51 0.00 39.88 2.43
2453 2483 2.430332 GAGCTGTGCTGAATAGGTCTCT 59.570 50.000 4.51 0.00 39.88 3.10
2454 2484 2.482839 GGAGCTGTGCTGAATAGGTCTC 60.483 54.545 10.83 0.00 42.41 3.36
2455 2485 1.484240 GGAGCTGTGCTGAATAGGTCT 59.516 52.381 10.83 0.00 42.41 3.85
2456 2486 1.208052 TGGAGCTGTGCTGAATAGGTC 59.792 52.381 3.20 3.20 42.14 3.85
2457 2487 1.279496 TGGAGCTGTGCTGAATAGGT 58.721 50.000 0.00 0.00 39.88 3.08
2458 2488 2.408271 TTGGAGCTGTGCTGAATAGG 57.592 50.000 0.00 0.00 39.88 2.57
2459 2489 3.755378 ACTTTTGGAGCTGTGCTGAATAG 59.245 43.478 0.00 0.00 39.88 1.73
2460 2490 3.753272 GACTTTTGGAGCTGTGCTGAATA 59.247 43.478 0.00 0.00 39.88 1.75
2461 2491 2.555757 GACTTTTGGAGCTGTGCTGAAT 59.444 45.455 0.00 0.00 39.88 2.57
2462 2492 1.949525 GACTTTTGGAGCTGTGCTGAA 59.050 47.619 0.00 0.00 39.88 3.02
2463 2493 1.597742 GACTTTTGGAGCTGTGCTGA 58.402 50.000 0.00 0.00 39.88 4.26
2464 2494 0.595095 GGACTTTTGGAGCTGTGCTG 59.405 55.000 0.00 0.00 39.88 4.41
2465 2495 0.538287 GGGACTTTTGGAGCTGTGCT 60.538 55.000 0.00 0.00 43.88 4.40
2466 2496 1.856265 CGGGACTTTTGGAGCTGTGC 61.856 60.000 0.00 0.00 0.00 4.57
2467 2497 0.250295 TCGGGACTTTTGGAGCTGTG 60.250 55.000 0.00 0.00 0.00 3.66
2468 2498 0.472471 TTCGGGACTTTTGGAGCTGT 59.528 50.000 0.00 0.00 0.00 4.40
2469 2499 1.266989 GTTTCGGGACTTTTGGAGCTG 59.733 52.381 0.00 0.00 0.00 4.24
2470 2500 1.143073 AGTTTCGGGACTTTTGGAGCT 59.857 47.619 0.00 0.00 0.00 4.09
2471 2501 1.605753 AGTTTCGGGACTTTTGGAGC 58.394 50.000 0.00 0.00 0.00 4.70
2472 2502 3.003378 GTGAAGTTTCGGGACTTTTGGAG 59.997 47.826 5.93 0.00 39.84 3.86
2473 2503 2.946990 GTGAAGTTTCGGGACTTTTGGA 59.053 45.455 5.93 0.00 39.84 3.53
2474 2504 2.286772 CGTGAAGTTTCGGGACTTTTGG 60.287 50.000 5.93 0.00 39.84 3.28
2475 2505 2.286772 CCGTGAAGTTTCGGGACTTTTG 60.287 50.000 11.09 1.06 39.84 2.44
2476 2506 1.944709 CCGTGAAGTTTCGGGACTTTT 59.055 47.619 11.09 0.00 39.84 2.27
2477 2507 1.139455 TCCGTGAAGTTTCGGGACTTT 59.861 47.619 16.49 0.00 45.79 2.66
2478 2508 0.754472 TCCGTGAAGTTTCGGGACTT 59.246 50.000 16.49 4.37 45.79 3.01
2479 2509 0.974383 ATCCGTGAAGTTTCGGGACT 59.026 50.000 16.49 4.07 45.79 3.85
2480 2510 1.076332 CATCCGTGAAGTTTCGGGAC 58.924 55.000 16.49 0.00 45.79 4.46
2481 2511 0.970640 TCATCCGTGAAGTTTCGGGA 59.029 50.000 16.49 6.85 45.79 5.14
2482 2512 1.665679 CATCATCCGTGAAGTTTCGGG 59.334 52.381 16.49 5.81 45.79 5.14
2483 2513 2.346803 ACATCATCCGTGAAGTTTCGG 58.653 47.619 12.28 12.28 46.93 4.30
2487 2517 4.141287 TGGAAAACATCATCCGTGAAGTT 58.859 39.130 0.00 0.00 45.29 2.66
2488 2518 3.750371 TGGAAAACATCATCCGTGAAGT 58.250 40.909 0.00 0.00 37.86 3.01
2489 2519 4.764679 TTGGAAAACATCATCCGTGAAG 57.235 40.909 0.00 0.00 38.63 3.02
2490 2520 5.720371 ATTTGGAAAACATCATCCGTGAA 57.280 34.783 0.00 0.00 38.63 3.18
2491 2521 8.690203 ATATATTTGGAAAACATCATCCGTGA 57.310 30.769 0.00 0.00 38.63 4.35
2518 2548 1.860326 GTGCTTGCGCTCAATGTTTTT 59.140 42.857 9.73 0.00 36.97 1.94
2519 2549 1.067516 AGTGCTTGCGCTCAATGTTTT 59.932 42.857 9.73 0.00 36.97 2.43
2520 2550 0.670162 AGTGCTTGCGCTCAATGTTT 59.330 45.000 9.73 0.00 36.97 2.83
2521 2551 0.670162 AAGTGCTTGCGCTCAATGTT 59.330 45.000 9.73 0.00 36.97 2.71
2522 2552 0.239347 GAAGTGCTTGCGCTCAATGT 59.761 50.000 9.73 0.00 36.97 2.71
2523 2553 0.239082 TGAAGTGCTTGCGCTCAATG 59.761 50.000 9.73 0.00 36.97 2.82
2524 2554 0.239347 GTGAAGTGCTTGCGCTCAAT 59.761 50.000 9.73 0.00 36.97 2.57
2525 2555 1.648720 GTGAAGTGCTTGCGCTCAA 59.351 52.632 9.73 0.00 36.97 3.02
2526 2556 2.253758 GGTGAAGTGCTTGCGCTCA 61.254 57.895 9.73 0.00 36.97 4.26
2527 2557 2.180131 CTGGTGAAGTGCTTGCGCTC 62.180 60.000 9.73 0.00 36.97 5.03
2528 2558 2.203195 TGGTGAAGTGCTTGCGCT 60.203 55.556 9.73 2.53 36.97 5.92
2529 2559 2.253452 CTGGTGAAGTGCTTGCGC 59.747 61.111 0.00 0.00 0.00 6.09
2530 2560 2.620112 CCCTGGTGAAGTGCTTGCG 61.620 63.158 0.00 0.00 0.00 4.85
2531 2561 2.270986 CCCCTGGTGAAGTGCTTGC 61.271 63.158 0.00 0.00 0.00 4.01
2532 2562 1.604593 CCCCCTGGTGAAGTGCTTG 60.605 63.158 0.00 0.00 0.00 4.01
2533 2563 2.846532 CCCCCTGGTGAAGTGCTT 59.153 61.111 0.00 0.00 0.00 3.91
2551 2581 4.927782 TCGTGTGCAGGGTGTGGC 62.928 66.667 0.00 0.00 0.00 5.01
2552 2582 2.666190 CTCGTGTGCAGGGTGTGG 60.666 66.667 0.00 0.00 0.00 4.17
2553 2583 2.666190 CCTCGTGTGCAGGGTGTG 60.666 66.667 0.00 0.00 0.00 3.82
2554 2584 3.941188 CCCTCGTGTGCAGGGTGT 61.941 66.667 0.00 0.00 45.35 4.16
2558 2588 2.579201 CCTACCCTCGTGTGCAGG 59.421 66.667 0.00 0.00 0.00 4.85
2559 2589 2.579201 CCCTACCCTCGTGTGCAG 59.421 66.667 0.00 0.00 0.00 4.41
2560 2590 3.000819 CCCCTACCCTCGTGTGCA 61.001 66.667 0.00 0.00 0.00 4.57
2561 2591 4.468689 GCCCCTACCCTCGTGTGC 62.469 72.222 0.00 0.00 0.00 4.57
2562 2592 4.143333 CGCCCCTACCCTCGTGTG 62.143 72.222 0.00 0.00 0.00 3.82
2611 2641 4.798682 AGGGGGCCCACGAGGTAG 62.799 72.222 26.86 0.00 38.92 3.18
2641 2671 3.388024 TCCATATAGCAGAAGGTGGTCAC 59.612 47.826 0.00 0.00 38.14 3.67
2642 2672 3.388024 GTCCATATAGCAGAAGGTGGTCA 59.612 47.826 0.00 0.00 38.14 4.02
2643 2673 3.643792 AGTCCATATAGCAGAAGGTGGTC 59.356 47.826 0.00 0.00 38.14 4.02
2644 2674 3.643792 GAGTCCATATAGCAGAAGGTGGT 59.356 47.826 0.00 0.00 40.92 4.16
2645 2675 3.900601 AGAGTCCATATAGCAGAAGGTGG 59.099 47.826 0.00 0.00 0.00 4.61
2646 2676 5.543507 AAGAGTCCATATAGCAGAAGGTG 57.456 43.478 0.00 0.00 0.00 4.00
2647 2677 5.221342 CGAAAGAGTCCATATAGCAGAAGGT 60.221 44.000 0.00 0.00 0.00 3.50
2648 2678 5.010112 TCGAAAGAGTCCATATAGCAGAAGG 59.990 44.000 0.00 0.00 34.84 3.46
2649 2679 6.078202 TCGAAAGAGTCCATATAGCAGAAG 57.922 41.667 0.00 0.00 34.84 2.85
2679 2709 6.038714 GTCCGAGAAGATGGCTTATGATTTTT 59.961 38.462 0.00 0.00 33.61 1.94
2680 2710 5.529060 GTCCGAGAAGATGGCTTATGATTTT 59.471 40.000 0.00 0.00 33.61 1.82
2681 2711 5.059833 GTCCGAGAAGATGGCTTATGATTT 58.940 41.667 0.00 0.00 33.61 2.17
2682 2712 4.636249 GTCCGAGAAGATGGCTTATGATT 58.364 43.478 0.00 0.00 33.61 2.57
2683 2713 4.264460 GTCCGAGAAGATGGCTTATGAT 57.736 45.455 0.00 0.00 33.61 2.45
2684 2714 3.735237 GTCCGAGAAGATGGCTTATGA 57.265 47.619 0.00 0.00 33.61 2.15


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.