Multiple sequence alignment - TraesCS2A01G429600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G429600 chr2A 100.000 4125 0 0 1 4125 682623588 682627712 0.000000e+00 7618.0
1 TraesCS2A01G429600 chr2B 94.357 1772 76 12 1673 3440 643265698 643267449 0.000000e+00 2697.0
2 TraesCS2A01G429600 chr2B 90.023 1313 70 29 2175 3481 643360521 643361778 0.000000e+00 1642.0
3 TraesCS2A01G429600 chr2B 86.880 1311 118 25 135 1433 643264439 643265707 0.000000e+00 1419.0
4 TraesCS2A01G429600 chr2B 90.754 703 45 8 3437 4125 643267571 643268267 0.000000e+00 920.0
5 TraesCS2A01G429600 chr2B 88.041 485 33 11 953 1433 643359628 643360091 6.030000e-153 551.0
6 TraesCS2A01G429600 chr2B 89.873 395 37 3 1676 2068 643360085 643360478 4.760000e-139 505.0
7 TraesCS2A01G429600 chr2B 91.351 370 29 3 3750 4119 643383708 643384074 1.710000e-138 503.0
8 TraesCS2A01G429600 chr2B 78.378 481 88 11 2199 2670 638529222 638529695 8.670000e-77 298.0
9 TraesCS2A01G429600 chr2B 75.501 449 76 20 992 1430 638528322 638528746 5.440000e-44 189.0
10 TraesCS2A01G429600 chr2B 86.466 133 10 4 1 129 643264335 643264463 5.560000e-29 139.0
11 TraesCS2A01G429600 chr2B 88.235 119 8 5 1 114 643358282 643358399 2.000000e-28 137.0
12 TraesCS2A01G429600 chr2D 91.061 1980 115 24 136 2104 539414745 539416673 0.000000e+00 2619.0
13 TraesCS2A01G429600 chr2D 95.612 547 24 0 2796 3342 539417261 539417807 0.000000e+00 878.0
14 TraesCS2A01G429600 chr2D 92.813 487 21 5 2185 2670 539416693 539417166 0.000000e+00 693.0
15 TraesCS2A01G429600 chr2D 94.717 265 11 3 3327 3589 539417822 539418085 3.840000e-110 409.0
16 TraesCS2A01G429600 chr2D 95.349 129 5 1 1 129 539414641 539414768 1.940000e-48 204.0
17 TraesCS2A01G429600 chr2D 89.157 83 8 1 2076 2158 569193716 569193635 7.300000e-18 102.0
18 TraesCS2A01G429600 chr2D 87.654 81 8 1 2078 2158 335125761 335125683 4.390000e-15 93.5
19 TraesCS2A01G429600 chr7B 86.538 312 36 5 2815 3126 488369968 488369663 5.110000e-89 339.0
20 TraesCS2A01G429600 chr7B 78.289 456 80 15 2222 2670 488370508 488370065 4.060000e-70 276.0
21 TraesCS2A01G429600 chr7A 86.538 312 36 3 2826 3137 536725926 536725621 5.110000e-89 339.0
22 TraesCS2A01G429600 chr7A 79.787 470 70 17 2212 2677 536772129 536771681 6.650000e-83 318.0
23 TraesCS2A01G429600 chr7A 78.601 486 69 20 2213 2670 536726505 536726027 5.220000e-74 289.0
24 TraesCS2A01G429600 chr7D 84.337 332 46 2 2800 3131 463703758 463704083 1.850000e-83 320.0
25 TraesCS2A01G429600 chr3D 91.860 86 6 1 2072 2157 126949045 126949129 7.240000e-23 119.0
26 TraesCS2A01G429600 chr3B 91.860 86 6 1 2072 2157 181288810 181288894 7.240000e-23 119.0
27 TraesCS2A01G429600 chr3A 90.698 86 7 1 2072 2157 137579559 137579643 3.370000e-21 113.0
28 TraesCS2A01G429600 chr4B 85.057 87 9 3 2069 2155 212497996 212497914 7.350000e-13 86.1
29 TraesCS2A01G429600 chr4D 95.238 42 2 0 2116 2157 119227445 119227404 2.660000e-07 67.6
30 TraesCS2A01G429600 chr4A 81.081 74 12 2 2088 2161 513813230 513813159 1.600000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G429600 chr2A 682623588 682627712 4124 False 7618.00 7618 100.00000 1 4125 1 chr2A.!!$F1 4124
1 TraesCS2A01G429600 chr2B 643264335 643268267 3932 False 1293.75 2697 89.61425 1 4125 4 chr2B.!!$F3 4124
2 TraesCS2A01G429600 chr2B 643358282 643361778 3496 False 708.75 1642 89.04300 1 3481 4 chr2B.!!$F4 3480
3 TraesCS2A01G429600 chr2B 638528322 638529695 1373 False 243.50 298 76.93950 992 2670 2 chr2B.!!$F2 1678
4 TraesCS2A01G429600 chr2D 539414641 539418085 3444 False 960.60 2619 93.91040 1 3589 5 chr2D.!!$F1 3588
5 TraesCS2A01G429600 chr7B 488369663 488370508 845 True 307.50 339 82.41350 2222 3126 2 chr7B.!!$R1 904
6 TraesCS2A01G429600 chr7A 536725621 536726505 884 True 314.00 339 82.56950 2213 3137 2 chr7A.!!$R2 924

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
724 789 0.461693 GCTGCCTCCTGCTTCACTAG 60.462 60.0 0.0 0.0 42.00 2.57 F
1380 1896 0.038526 TGCTCCTCGGAACTTTCGAC 60.039 55.0 0.0 0.0 32.86 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2409 3253 0.036306 CCCGAGGGCAACAAGTACTT 59.964 55.0 1.12 1.12 39.74 2.24 R
3240 4152 0.463654 AAGCTCCGGCGCAATAATCA 60.464 50.0 20.31 0.00 44.37 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 82 6.286240 AGCCAAGGAGGTAATTGAAATTTC 57.714 37.500 11.41 11.41 40.61 2.17
149 156 9.892130 TTTTTGCGGGGAAATTAATAATGTATT 57.108 25.926 0.00 0.00 0.00 1.89
150 157 9.535878 TTTTGCGGGGAAATTAATAATGTATTC 57.464 29.630 0.00 0.00 0.00 1.75
151 158 8.472007 TTGCGGGGAAATTAATAATGTATTCT 57.528 30.769 0.00 0.00 0.00 2.40
152 159 8.472007 TGCGGGGAAATTAATAATGTATTCTT 57.528 30.769 0.00 0.00 0.00 2.52
153 160 9.575868 TGCGGGGAAATTAATAATGTATTCTTA 57.424 29.630 0.00 0.00 0.00 2.10
278 296 9.664332 GTCCATGATTATCTTAGCATATCTTGT 57.336 33.333 0.00 0.00 0.00 3.16
293 311 6.019801 GCATATCTTGTACTTCGACGACAATT 60.020 38.462 0.00 0.00 32.89 2.32
295 313 6.780706 ATCTTGTACTTCGACGACAATTTT 57.219 33.333 0.00 0.00 32.89 1.82
296 314 6.592798 TCTTGTACTTCGACGACAATTTTT 57.407 33.333 0.00 0.00 32.89 1.94
393 418 6.169094 TCTCTCATTTTGTCATTCTGGAGAC 58.831 40.000 0.00 0.00 35.37 3.36
437 462 6.715344 ATTGTCACATGAAAATGATGCAAC 57.285 33.333 0.00 0.00 31.10 4.17
603 647 2.672381 GAGAGATGCACACAGCTTTCTC 59.328 50.000 0.00 0.00 44.20 2.87
706 771 6.310224 ACAACCGCAAGAAAAATATTACATGC 59.690 34.615 0.00 0.00 43.02 4.06
724 789 0.461693 GCTGCCTCCTGCTTCACTAG 60.462 60.000 0.00 0.00 42.00 2.57
781 849 2.243810 CACCCTAGCTACCATCTCTCC 58.756 57.143 0.00 0.00 0.00 3.71
803 875 6.150332 TCCTAGATTTGACCCAGAATCCATA 58.850 40.000 0.00 0.00 33.72 2.74
806 878 6.776887 AGATTTGACCCAGAATCCATAGAT 57.223 37.500 0.00 0.00 33.72 1.98
821 893 1.974265 TAGATGCTCAGTCCTCCTCG 58.026 55.000 0.00 0.00 0.00 4.63
825 897 3.137459 CTCAGTCCTCCTCGCGCT 61.137 66.667 5.56 0.00 0.00 5.92
838 910 3.195698 GCGCTGACGGATCCAACC 61.196 66.667 13.41 0.04 40.57 3.77
939 1431 6.346838 GCCAAAACTAAGCAATGCAAAAGTAG 60.347 38.462 8.35 3.46 0.00 2.57
944 1436 8.579682 AACTAAGCAATGCAAAAGTAGAAAAG 57.420 30.769 8.35 0.00 0.00 2.27
945 1437 7.940850 ACTAAGCAATGCAAAAGTAGAAAAGA 58.059 30.769 8.35 0.00 0.00 2.52
946 1438 8.413229 ACTAAGCAATGCAAAAGTAGAAAAGAA 58.587 29.630 8.35 0.00 0.00 2.52
947 1439 9.248291 CTAAGCAATGCAAAAGTAGAAAAGAAA 57.752 29.630 8.35 0.00 0.00 2.52
948 1440 8.491331 AAGCAATGCAAAAGTAGAAAAGAAAA 57.509 26.923 8.35 0.00 0.00 2.29
949 1441 8.491331 AGCAATGCAAAAGTAGAAAAGAAAAA 57.509 26.923 8.35 0.00 0.00 1.94
1053 1546 5.690409 TCGAAAGCTACCTAAAGCATTATCG 59.310 40.000 0.00 3.20 45.30 2.92
1236 1737 5.123227 ACACTTGCAAGTTCAGTTAGCTAA 58.877 37.500 29.23 0.86 37.08 3.09
1237 1738 5.237344 ACACTTGCAAGTTCAGTTAGCTAAG 59.763 40.000 29.23 15.10 37.08 2.18
1238 1739 5.466728 CACTTGCAAGTTCAGTTAGCTAAGA 59.533 40.000 29.23 0.00 37.08 2.10
1239 1740 6.148480 CACTTGCAAGTTCAGTTAGCTAAGAT 59.852 38.462 29.23 0.00 37.08 2.40
1240 1741 6.712547 ACTTGCAAGTTCAGTTAGCTAAGATT 59.287 34.615 26.36 0.00 35.21 2.40
1241 1742 7.229506 ACTTGCAAGTTCAGTTAGCTAAGATTT 59.770 33.333 26.36 0.00 35.21 2.17
1242 1743 8.615878 TTGCAAGTTCAGTTAGCTAAGATTTA 57.384 30.769 6.38 0.00 0.00 1.40
1243 1744 8.615878 TGCAAGTTCAGTTAGCTAAGATTTAA 57.384 30.769 6.38 0.00 0.00 1.52
1244 1745 8.504005 TGCAAGTTCAGTTAGCTAAGATTTAAC 58.496 33.333 6.38 7.55 0.00 2.01
1245 1746 8.504005 GCAAGTTCAGTTAGCTAAGATTTAACA 58.496 33.333 6.38 0.00 31.38 2.41
1249 1750 9.278734 GTTCAGTTAGCTAAGATTTAACAATGC 57.721 33.333 6.38 0.00 31.38 3.56
1250 1751 7.684670 TCAGTTAGCTAAGATTTAACAATGCG 58.315 34.615 6.38 0.00 31.38 4.73
1251 1752 6.907212 CAGTTAGCTAAGATTTAACAATGCGG 59.093 38.462 6.38 0.00 31.38 5.69
1252 1753 4.900635 AGCTAAGATTTAACAATGCGGG 57.099 40.909 0.00 0.00 0.00 6.13
1253 1754 3.632145 AGCTAAGATTTAACAATGCGGGG 59.368 43.478 0.00 0.00 0.00 5.73
1254 1755 3.380320 GCTAAGATTTAACAATGCGGGGT 59.620 43.478 0.00 0.00 0.00 4.95
1255 1756 3.866883 AAGATTTAACAATGCGGGGTG 57.133 42.857 0.00 0.00 0.00 4.61
1256 1757 2.802719 AGATTTAACAATGCGGGGTGT 58.197 42.857 0.00 0.00 0.00 4.16
1257 1758 2.491693 AGATTTAACAATGCGGGGTGTG 59.508 45.455 0.00 0.00 0.00 3.82
1258 1759 0.315568 TTTAACAATGCGGGGTGTGC 59.684 50.000 0.00 0.00 0.00 4.57
1261 1762 1.805428 AACAATGCGGGGTGTGCTTC 61.805 55.000 0.00 0.00 0.00 3.86
1316 1829 4.437239 AGACGAGAAACATGATGATGGAC 58.563 43.478 0.00 0.00 33.39 4.02
1380 1896 0.038526 TGCTCCTCGGAACTTTCGAC 60.039 55.000 0.00 0.00 32.86 4.20
1431 1947 3.698289 TCGTTGATCCAGGTTAGTCTCT 58.302 45.455 0.00 0.00 0.00 3.10
1432 1948 3.695060 TCGTTGATCCAGGTTAGTCTCTC 59.305 47.826 0.00 0.00 0.00 3.20
1434 1950 4.439426 CGTTGATCCAGGTTAGTCTCTCAG 60.439 50.000 0.00 0.00 0.00 3.35
1436 1952 4.531854 TGATCCAGGTTAGTCTCTCAGAG 58.468 47.826 0.00 0.00 0.00 3.35
1437 1953 4.228438 TGATCCAGGTTAGTCTCTCAGAGA 59.772 45.833 0.00 0.00 36.22 3.10
1438 1954 4.659529 TCCAGGTTAGTCTCTCAGAGAA 57.340 45.455 5.76 0.00 40.59 2.87
1439 1955 5.199982 TCCAGGTTAGTCTCTCAGAGAAT 57.800 43.478 10.04 10.04 40.59 2.40
1443 1959 6.071108 CCAGGTTAGTCTCTCAGAGAATTGAA 60.071 42.308 10.48 0.00 40.59 2.69
1444 1960 6.811170 CAGGTTAGTCTCTCAGAGAATTGAAC 59.189 42.308 10.48 9.38 40.59 3.18
1445 1961 6.723977 AGGTTAGTCTCTCAGAGAATTGAACT 59.276 38.462 10.48 5.01 40.59 3.01
1446 1962 7.234577 AGGTTAGTCTCTCAGAGAATTGAACTT 59.765 37.037 10.48 3.38 40.59 2.66
1447 1963 7.330700 GGTTAGTCTCTCAGAGAATTGAACTTG 59.669 40.741 10.48 0.00 40.59 3.16
1448 1964 5.237048 AGTCTCTCAGAGAATTGAACTTGC 58.763 41.667 5.76 0.00 40.59 4.01
1450 1966 4.021981 TCTCTCAGAGAATTGAACTTGCGA 60.022 41.667 0.32 0.00 35.59 5.10
1451 1967 3.990469 TCTCAGAGAATTGAACTTGCGAC 59.010 43.478 0.00 0.00 0.00 5.19
1454 1970 3.499918 CAGAGAATTGAACTTGCGACCTT 59.500 43.478 0.00 0.00 0.00 3.50
1455 1971 4.023707 CAGAGAATTGAACTTGCGACCTTT 60.024 41.667 0.00 0.00 0.00 3.11
1456 1972 4.214332 AGAGAATTGAACTTGCGACCTTTC 59.786 41.667 0.00 0.00 0.00 2.62
1458 1974 2.045561 TTGAACTTGCGACCTTTCCA 57.954 45.000 0.00 0.00 0.00 3.53
1459 1975 1.305201 TGAACTTGCGACCTTTCCAC 58.695 50.000 0.00 0.00 0.00 4.02
1460 1976 0.591659 GAACTTGCGACCTTTCCACC 59.408 55.000 0.00 0.00 0.00 4.61
1461 1977 1.164041 AACTTGCGACCTTTCCACCG 61.164 55.000 0.00 0.00 0.00 4.94
1469 1985 4.778143 CTTTCCACCGGCGGGGAG 62.778 72.222 33.45 20.31 39.97 4.30
1479 1995 3.787001 GCGGGGAGGTTGAGGGAG 61.787 72.222 0.00 0.00 0.00 4.30
1480 1996 2.284699 CGGGGAGGTTGAGGGAGT 60.285 66.667 0.00 0.00 0.00 3.85
1481 1997 2.660064 CGGGGAGGTTGAGGGAGTG 61.660 68.421 0.00 0.00 0.00 3.51
1482 1998 1.539124 GGGGAGGTTGAGGGAGTGT 60.539 63.158 0.00 0.00 0.00 3.55
1483 1999 1.134438 GGGGAGGTTGAGGGAGTGTT 61.134 60.000 0.00 0.00 0.00 3.32
1484 2000 1.652947 GGGAGGTTGAGGGAGTGTTA 58.347 55.000 0.00 0.00 0.00 2.41
1485 2001 2.197465 GGGAGGTTGAGGGAGTGTTAT 58.803 52.381 0.00 0.00 0.00 1.89
1486 2002 3.381335 GGGAGGTTGAGGGAGTGTTATA 58.619 50.000 0.00 0.00 0.00 0.98
1487 2003 3.134262 GGGAGGTTGAGGGAGTGTTATAC 59.866 52.174 0.00 0.00 0.00 1.47
1488 2004 3.134262 GGAGGTTGAGGGAGTGTTATACC 59.866 52.174 0.00 0.00 0.00 2.73
1489 2005 3.773119 GAGGTTGAGGGAGTGTTATACCA 59.227 47.826 0.00 0.00 0.00 3.25
1490 2006 3.518303 AGGTTGAGGGAGTGTTATACCAC 59.482 47.826 0.00 0.00 35.53 4.16
1492 2008 4.713321 GGTTGAGGGAGTGTTATACCACTA 59.287 45.833 2.51 0.00 45.46 2.74
1493 2009 5.163437 GGTTGAGGGAGTGTTATACCACTAG 60.163 48.000 2.51 0.00 45.46 2.57
1494 2010 4.543689 TGAGGGAGTGTTATACCACTAGG 58.456 47.826 2.51 0.00 45.46 3.02
1495 2011 3.306613 AGGGAGTGTTATACCACTAGGC 58.693 50.000 2.51 0.00 45.46 3.93
1496 2012 3.052033 AGGGAGTGTTATACCACTAGGCT 60.052 47.826 2.51 0.00 45.46 4.58
1497 2013 4.169461 AGGGAGTGTTATACCACTAGGCTA 59.831 45.833 2.51 0.00 45.46 3.93
1498 2014 4.523558 GGGAGTGTTATACCACTAGGCTAG 59.476 50.000 19.83 19.83 45.46 3.42
1499 2015 4.523558 GGAGTGTTATACCACTAGGCTAGG 59.476 50.000 24.57 12.01 45.46 3.02
1500 2016 5.383476 GAGTGTTATACCACTAGGCTAGGA 58.617 45.833 24.57 8.13 45.46 2.94
1501 2017 5.386924 AGTGTTATACCACTAGGCTAGGAG 58.613 45.833 24.57 17.07 43.71 3.69
1502 2018 4.523558 GTGTTATACCACTAGGCTAGGAGG 59.476 50.000 24.57 24.82 39.06 4.30
1503 2019 4.169461 TGTTATACCACTAGGCTAGGAGGT 59.831 45.833 30.78 30.78 40.14 3.85
1504 2020 3.529216 ATACCACTAGGCTAGGAGGTC 57.471 52.381 31.50 0.00 38.62 3.85
1505 2021 1.008403 ACCACTAGGCTAGGAGGTCA 58.992 55.000 26.04 0.00 39.06 4.02
1506 2022 1.576272 ACCACTAGGCTAGGAGGTCAT 59.424 52.381 26.04 11.29 39.06 3.06
1507 2023 2.022918 ACCACTAGGCTAGGAGGTCATT 60.023 50.000 26.04 11.01 39.06 2.57
1508 2024 3.041946 CCACTAGGCTAGGAGGTCATTT 58.958 50.000 24.57 0.00 0.00 2.32
1509 2025 3.456277 CCACTAGGCTAGGAGGTCATTTT 59.544 47.826 24.57 0.00 0.00 1.82
1510 2026 4.446371 CACTAGGCTAGGAGGTCATTTTG 58.554 47.826 24.57 6.76 0.00 2.44
1511 2027 3.456277 ACTAGGCTAGGAGGTCATTTTGG 59.544 47.826 24.57 0.00 0.00 3.28
1512 2028 2.279173 AGGCTAGGAGGTCATTTTGGT 58.721 47.619 0.00 0.00 0.00 3.67
1513 2029 2.649816 AGGCTAGGAGGTCATTTTGGTT 59.350 45.455 0.00 0.00 0.00 3.67
1514 2030 3.850173 AGGCTAGGAGGTCATTTTGGTTA 59.150 43.478 0.00 0.00 0.00 2.85
1515 2031 4.291249 AGGCTAGGAGGTCATTTTGGTTAA 59.709 41.667 0.00 0.00 0.00 2.01
1516 2032 5.014202 GGCTAGGAGGTCATTTTGGTTAAA 58.986 41.667 0.00 0.00 0.00 1.52
1517 2033 5.105877 GGCTAGGAGGTCATTTTGGTTAAAC 60.106 44.000 0.00 0.00 0.00 2.01
1518 2034 5.710567 GCTAGGAGGTCATTTTGGTTAAACT 59.289 40.000 0.00 0.00 0.00 2.66
1519 2035 6.349363 GCTAGGAGGTCATTTTGGTTAAACTG 60.349 42.308 0.00 0.00 0.00 3.16
1520 2036 5.454966 AGGAGGTCATTTTGGTTAAACTGT 58.545 37.500 0.00 0.00 30.87 3.55
1521 2037 5.301805 AGGAGGTCATTTTGGTTAAACTGTG 59.698 40.000 0.00 0.00 30.87 3.66
1522 2038 5.508994 GGAGGTCATTTTGGTTAAACTGTGG 60.509 44.000 0.00 0.00 30.87 4.17
1523 2039 4.959839 AGGTCATTTTGGTTAAACTGTGGT 59.040 37.500 0.00 0.00 30.87 4.16
1524 2040 5.423931 AGGTCATTTTGGTTAAACTGTGGTT 59.576 36.000 0.00 0.00 37.24 3.67
1525 2041 5.751509 GGTCATTTTGGTTAAACTGTGGTTC 59.248 40.000 0.00 0.00 34.14 3.62
1526 2042 6.334202 GTCATTTTGGTTAAACTGTGGTTCA 58.666 36.000 0.00 0.00 34.14 3.18
1527 2043 6.814146 GTCATTTTGGTTAAACTGTGGTTCAA 59.186 34.615 0.00 0.00 34.14 2.69
1528 2044 6.814146 TCATTTTGGTTAAACTGTGGTTCAAC 59.186 34.615 0.00 0.00 33.90 3.18
1529 2045 5.723672 TTTGGTTAAACTGTGGTTCAACA 57.276 34.783 0.00 0.00 35.78 3.33
1530 2046 5.923733 TTGGTTAAACTGTGGTTCAACAT 57.076 34.783 0.00 0.00 35.78 2.71
1531 2047 5.255710 TGGTTAAACTGTGGTTCAACATG 57.744 39.130 0.00 0.00 35.78 3.21
1532 2048 4.707448 TGGTTAAACTGTGGTTCAACATGT 59.293 37.500 0.00 0.00 35.78 3.21
1533 2049 5.886474 TGGTTAAACTGTGGTTCAACATGTA 59.114 36.000 0.00 0.00 35.78 2.29
1534 2050 6.547880 TGGTTAAACTGTGGTTCAACATGTAT 59.452 34.615 0.00 0.00 35.78 2.29
1535 2051 7.720074 TGGTTAAACTGTGGTTCAACATGTATA 59.280 33.333 0.00 0.00 35.78 1.47
1536 2052 8.569641 GGTTAAACTGTGGTTCAACATGTATAA 58.430 33.333 0.00 0.00 35.78 0.98
1537 2053 9.953697 GTTAAACTGTGGTTCAACATGTATAAA 57.046 29.630 0.00 0.00 34.59 1.40
1542 2058 9.905713 ACTGTGGTTCAACATGTATAAATATCT 57.094 29.630 0.00 0.00 0.00 1.98
1594 2110 8.934507 TGATTTAAATTTCGTCCAAAAGTTGT 57.065 26.923 1.43 0.00 30.07 3.32
1595 2111 9.372369 TGATTTAAATTTCGTCCAAAAGTTGTT 57.628 25.926 1.43 0.00 30.07 2.83
1596 2112 9.843874 GATTTAAATTTCGTCCAAAAGTTGTTC 57.156 29.630 1.43 0.00 30.07 3.18
1597 2113 8.989653 TTTAAATTTCGTCCAAAAGTTGTTCT 57.010 26.923 0.00 0.00 30.07 3.01
1598 2114 6.885735 AAATTTCGTCCAAAAGTTGTTCTG 57.114 33.333 0.00 0.00 0.00 3.02
1599 2115 5.576447 ATTTCGTCCAAAAGTTGTTCTGT 57.424 34.783 0.00 0.00 0.00 3.41
1600 2116 6.687081 ATTTCGTCCAAAAGTTGTTCTGTA 57.313 33.333 0.00 0.00 0.00 2.74
1601 2117 6.687081 TTTCGTCCAAAAGTTGTTCTGTAT 57.313 33.333 0.00 0.00 0.00 2.29
1602 2118 6.687081 TTCGTCCAAAAGTTGTTCTGTATT 57.313 33.333 0.00 0.00 0.00 1.89
1603 2119 6.687081 TCGTCCAAAAGTTGTTCTGTATTT 57.313 33.333 0.00 0.00 0.00 1.40
1604 2120 7.090953 TCGTCCAAAAGTTGTTCTGTATTTT 57.909 32.000 0.00 0.00 0.00 1.82
1605 2121 7.540299 TCGTCCAAAAGTTGTTCTGTATTTTT 58.460 30.769 0.00 0.00 0.00 1.94
1606 2122 7.486551 TCGTCCAAAAGTTGTTCTGTATTTTTG 59.513 33.333 0.00 0.00 36.06 2.44
1608 2124 7.841915 CCAAAAGTTGTTCTGTATTTTTGGT 57.158 32.000 14.99 0.00 44.57 3.67
1609 2125 8.262715 CCAAAAGTTGTTCTGTATTTTTGGTT 57.737 30.769 14.99 0.00 44.57 3.67
1610 2126 8.387354 CCAAAAGTTGTTCTGTATTTTTGGTTC 58.613 33.333 14.99 0.00 44.57 3.62
1611 2127 8.387354 CAAAAGTTGTTCTGTATTTTTGGTTCC 58.613 33.333 0.00 0.00 33.92 3.62
1612 2128 7.418337 AAGTTGTTCTGTATTTTTGGTTCCT 57.582 32.000 0.00 0.00 0.00 3.36
1613 2129 6.805713 AGTTGTTCTGTATTTTTGGTTCCTG 58.194 36.000 0.00 0.00 0.00 3.86
1614 2130 6.379988 AGTTGTTCTGTATTTTTGGTTCCTGT 59.620 34.615 0.00 0.00 0.00 4.00
1615 2131 6.142818 TGTTCTGTATTTTTGGTTCCTGTG 57.857 37.500 0.00 0.00 0.00 3.66
1616 2132 4.846779 TCTGTATTTTTGGTTCCTGTGC 57.153 40.909 0.00 0.00 0.00 4.57
1617 2133 4.469657 TCTGTATTTTTGGTTCCTGTGCT 58.530 39.130 0.00 0.00 0.00 4.40
1618 2134 5.626142 TCTGTATTTTTGGTTCCTGTGCTA 58.374 37.500 0.00 0.00 0.00 3.49
1619 2135 6.065374 TCTGTATTTTTGGTTCCTGTGCTAA 58.935 36.000 0.00 0.00 0.00 3.09
1620 2136 6.016610 TCTGTATTTTTGGTTCCTGTGCTAAC 60.017 38.462 0.00 0.00 0.00 2.34
1621 2137 4.600692 ATTTTTGGTTCCTGTGCTAACC 57.399 40.909 0.00 0.00 44.51 2.85
1622 2138 1.600023 TTTGGTTCCTGTGCTAACCG 58.400 50.000 0.00 0.00 46.74 4.44
1623 2139 0.759959 TTGGTTCCTGTGCTAACCGA 59.240 50.000 0.00 0.00 46.74 4.69
1624 2140 0.320374 TGGTTCCTGTGCTAACCGAG 59.680 55.000 0.00 0.00 46.74 4.63
1625 2141 0.320697 GGTTCCTGTGCTAACCGAGT 59.679 55.000 0.00 0.00 36.12 4.18
1626 2142 1.547372 GGTTCCTGTGCTAACCGAGTA 59.453 52.381 0.00 0.00 36.12 2.59
1627 2143 2.167900 GGTTCCTGTGCTAACCGAGTAT 59.832 50.000 0.00 0.00 36.12 2.12
1628 2144 3.369157 GGTTCCTGTGCTAACCGAGTATT 60.369 47.826 0.00 0.00 36.12 1.89
1629 2145 4.251268 GTTCCTGTGCTAACCGAGTATTT 58.749 43.478 0.00 0.00 0.00 1.40
1630 2146 4.546829 TCCTGTGCTAACCGAGTATTTT 57.453 40.909 0.00 0.00 0.00 1.82
1631 2147 4.250464 TCCTGTGCTAACCGAGTATTTTG 58.750 43.478 0.00 0.00 0.00 2.44
1632 2148 3.374058 CCTGTGCTAACCGAGTATTTTGG 59.626 47.826 0.00 0.00 36.29 3.28
1633 2149 4.000988 CTGTGCTAACCGAGTATTTTGGT 58.999 43.478 0.00 0.00 46.19 3.67
1634 2150 3.749088 TGTGCTAACCGAGTATTTTGGTG 59.251 43.478 0.00 0.00 43.21 4.17
1635 2151 2.745281 TGCTAACCGAGTATTTTGGTGC 59.255 45.455 0.00 0.00 43.21 5.01
1636 2152 2.096980 GCTAACCGAGTATTTTGGTGCC 59.903 50.000 0.00 0.00 43.21 5.01
1637 2153 1.541379 AACCGAGTATTTTGGTGCCC 58.459 50.000 0.00 0.00 43.21 5.36
1638 2154 0.323087 ACCGAGTATTTTGGTGCCCC 60.323 55.000 0.00 0.00 42.35 5.80
1639 2155 0.322997 CCGAGTATTTTGGTGCCCCA 60.323 55.000 0.00 0.00 39.65 4.96
1640 2156 0.808755 CGAGTATTTTGGTGCCCCAC 59.191 55.000 0.00 0.00 41.67 4.61
1641 2157 0.808755 GAGTATTTTGGTGCCCCACG 59.191 55.000 0.00 0.00 41.67 4.94
1642 2158 0.402504 AGTATTTTGGTGCCCCACGA 59.597 50.000 0.00 0.00 41.67 4.35
1643 2159 0.808755 GTATTTTGGTGCCCCACGAG 59.191 55.000 0.00 0.00 41.67 4.18
1644 2160 0.693622 TATTTTGGTGCCCCACGAGA 59.306 50.000 0.00 0.00 41.67 4.04
1645 2161 0.178975 ATTTTGGTGCCCCACGAGAA 60.179 50.000 0.00 0.00 41.67 2.87
1646 2162 0.395862 TTTTGGTGCCCCACGAGAAA 60.396 50.000 0.00 0.00 41.67 2.52
1647 2163 0.395862 TTTGGTGCCCCACGAGAAAA 60.396 50.000 0.00 0.00 41.67 2.29
1648 2164 0.395862 TTGGTGCCCCACGAGAAAAA 60.396 50.000 0.00 0.00 41.67 1.94
1668 2184 6.603940 AAAAATCATCCTTCGGAATCCAAA 57.396 33.333 0.00 0.00 34.34 3.28
1669 2185 6.603940 AAAATCATCCTTCGGAATCCAAAA 57.396 33.333 0.00 0.00 34.34 2.44
1670 2186 5.582689 AATCATCCTTCGGAATCCAAAAC 57.417 39.130 0.00 0.00 34.34 2.43
1671 2187 3.352648 TCATCCTTCGGAATCCAAAACC 58.647 45.455 0.00 0.00 34.34 3.27
1672 2188 3.010138 TCATCCTTCGGAATCCAAAACCT 59.990 43.478 0.00 0.00 34.34 3.50
1673 2189 3.518992 TCCTTCGGAATCCAAAACCTT 57.481 42.857 0.00 0.00 0.00 3.50
1674 2190 3.153919 TCCTTCGGAATCCAAAACCTTG 58.846 45.455 0.00 0.00 0.00 3.61
1675 2191 5.354989 ATCCTTCGGAATCCAAAACCTTGG 61.355 45.833 0.00 0.00 43.83 3.61
1676 2192 7.756083 ATCCTTCGGAATCCAAAACCTTGGT 62.756 44.000 0.00 0.00 43.36 3.67
1762 2575 4.163458 TGAACAGTAAGGATGGTATGGGTC 59.837 45.833 0.00 0.00 0.00 4.46
1764 2577 2.698797 CAGTAAGGATGGTATGGGTCGT 59.301 50.000 0.00 0.00 0.00 4.34
1833 2648 5.935945 TCAGTTTATGTGAAGGAGTTTGGA 58.064 37.500 0.00 0.00 0.00 3.53
1895 2710 2.001872 TGACATGATGATGTGCGTCAC 58.998 47.619 1.30 3.44 44.84 3.67
2302 3145 1.768684 AACGATGCTGGTGTGGGAGT 61.769 55.000 0.00 0.00 0.00 3.85
2409 3253 5.954757 AGCTGAGCTACCCTTCTAGTAATA 58.045 41.667 4.49 0.00 36.99 0.98
2410 3254 6.374588 AGCTGAGCTACCCTTCTAGTAATAA 58.625 40.000 4.49 0.00 36.99 1.40
2411 3255 6.492087 AGCTGAGCTACCCTTCTAGTAATAAG 59.508 42.308 4.49 0.00 36.99 1.73
2422 3266 7.494952 CCCTTCTAGTAATAAGTACTTGTTGCC 59.505 40.741 23.36 15.06 40.33 4.52
2519 3394 4.758251 TGCGGCGAGGACATGGTG 62.758 66.667 12.98 0.00 0.00 4.17
2721 3596 3.217599 TCTCACGTGACTGAATGCTAC 57.782 47.619 15.76 0.00 0.00 3.58
2722 3597 2.820197 TCTCACGTGACTGAATGCTACT 59.180 45.455 15.76 0.00 0.00 2.57
2767 3654 3.667960 GCTGTCTGTTCACTAAAATGGCG 60.668 47.826 0.00 0.00 0.00 5.69
2769 3656 4.633175 TGTCTGTTCACTAAAATGGCGTA 58.367 39.130 0.00 0.00 0.00 4.42
2770 3657 5.242434 TGTCTGTTCACTAAAATGGCGTAT 58.758 37.500 0.00 0.00 0.00 3.06
2786 3673 5.463286 TGGCGTATATATATATTTCGGCCG 58.537 41.667 29.88 22.12 40.18 6.13
2821 3733 1.323534 GTGATCGTCAATGTGTACGCC 59.676 52.381 3.51 0.00 38.94 5.68
2890 3802 0.826672 AGAGGTTCCTGAACGACGGT 60.827 55.000 0.00 0.00 42.02 4.83
3015 3927 1.300697 GGTTCGTGCAGGAGTTCGT 60.301 57.895 9.34 0.00 0.00 3.85
3016 3928 0.878961 GGTTCGTGCAGGAGTTCGTT 60.879 55.000 9.34 0.00 0.00 3.85
3162 4074 2.423538 GCTTGTTTGACAGTGGAGTTGT 59.576 45.455 0.00 0.00 0.00 3.32
3207 4119 9.369904 GTGCATGTTTTAATGATTTACCTCAAT 57.630 29.630 0.00 0.00 0.00 2.57
3238 4150 4.339814 TCGGATTTTTACACTGTTTGCCTT 59.660 37.500 0.00 0.00 0.00 4.35
3240 4152 5.356426 GGATTTTTACACTGTTTGCCTTGT 58.644 37.500 0.00 0.00 0.00 3.16
3270 4182 0.825840 CCGGAGCTTTTGGGGTTCAA 60.826 55.000 0.00 0.00 0.00 2.69
3295 4207 4.573201 TCGGAACCAAAAACAAGACTGTAG 59.427 41.667 0.00 0.00 33.45 2.74
3445 4513 7.118535 TGCTAGCGACAATCACATACTTTTTAA 59.881 33.333 10.77 0.00 0.00 1.52
3472 4540 8.476064 ACATAGAGGTAGAGATGCATATATGG 57.524 38.462 14.51 0.00 0.00 2.74
3552 4621 1.072331 ACAGAGGCCAAGTAACCACAG 59.928 52.381 5.01 0.00 0.00 3.66
3565 4634 3.963383 AACCACAGCGTTAAAGTCTTG 57.037 42.857 0.00 0.00 0.00 3.02
3591 4660 7.923878 GCAAACCAGATAGTAAAAAGGAAACAA 59.076 33.333 0.00 0.00 0.00 2.83
3596 4665 8.727910 CCAGATAGTAAAAAGGAAACAAGGTAC 58.272 37.037 0.00 0.00 0.00 3.34
3604 4673 3.454375 AGGAAACAAGGTACATATCGCG 58.546 45.455 0.00 0.00 0.00 5.87
3605 4674 3.131577 AGGAAACAAGGTACATATCGCGA 59.868 43.478 13.09 13.09 0.00 5.87
3606 4675 3.244579 GGAAACAAGGTACATATCGCGAC 59.755 47.826 12.93 0.00 0.00 5.19
3607 4676 3.795623 AACAAGGTACATATCGCGACT 57.204 42.857 12.93 3.29 0.00 4.18
3608 4677 3.351020 ACAAGGTACATATCGCGACTC 57.649 47.619 12.93 0.00 0.00 3.36
3609 4678 2.286831 ACAAGGTACATATCGCGACTCG 60.287 50.000 12.93 4.71 40.15 4.18
3636 4706 2.609459 AGCGCAGGAACATTAAGAATCG 59.391 45.455 11.47 0.00 0.00 3.34
3642 4712 3.947834 AGGAACATTAAGAATCGCCTTGG 59.052 43.478 0.00 0.00 0.00 3.61
3665 4735 2.363018 CTCGGGAGCTCCTGTGGA 60.363 66.667 35.40 23.25 43.01 4.02
3670 4740 1.050988 GGGAGCTCCTGTGGATAGCA 61.051 60.000 31.36 0.00 35.95 3.49
3700 4770 6.627087 TGTTTGATCTTGAGAAGGATACCT 57.373 37.500 0.00 0.00 33.87 3.08
3733 4803 6.627087 TCACAATCATTCTTCTTCCCTAGT 57.373 37.500 0.00 0.00 0.00 2.57
3747 4829 0.392998 CCTAGTGGACGCCATTGCTT 60.393 55.000 1.90 0.00 35.28 3.91
3753 4835 2.729360 GTGGACGCCATTGCTTAAAAAC 59.271 45.455 1.90 0.00 35.28 2.43
3865 4947 2.165319 AGCACTAAACGGTCTCCAAC 57.835 50.000 0.00 0.00 0.00 3.77
3873 4955 1.153628 CGGTCTCCAACCTAAGCGG 60.154 63.158 0.00 0.00 46.87 5.52
3874 4956 1.449778 GGTCTCCAACCTAAGCGGC 60.450 63.158 0.00 0.00 45.45 6.53
3875 4957 1.295423 GTCTCCAACCTAAGCGGCA 59.705 57.895 1.45 0.00 35.61 5.69
3931 5013 7.530426 AGGATATCTAACATTGAATTTGGGC 57.470 36.000 2.05 0.00 0.00 5.36
3942 5024 2.234414 TGAATTTGGGCTCCAAGATTGC 59.766 45.455 6.73 0.00 44.84 3.56
3961 5043 1.202405 GCCCAAAACACAACTCCACAG 60.202 52.381 0.00 0.00 0.00 3.66
3969 5051 2.162681 CACAACTCCACAGGGATTTCC 58.837 52.381 0.00 0.00 43.91 3.13
3971 5053 2.447047 ACAACTCCACAGGGATTTCCTT 59.553 45.455 0.00 0.00 45.47 3.36
3980 5062 1.642762 AGGGATTTCCTTGGAGCACAT 59.357 47.619 0.00 0.00 45.47 3.21
4010 5093 4.357918 AATATGATTGGAGTTCTCCGGG 57.642 45.455 13.27 0.00 0.00 5.73
4017 5100 2.041265 AGTTCTCCGGGGAGCCAT 59.959 61.111 15.46 0.00 41.71 4.40
4019 5102 0.760945 AGTTCTCCGGGGAGCCATAG 60.761 60.000 15.46 0.00 41.71 2.23
4025 5108 1.834378 CGGGGAGCCATAGAGAGCA 60.834 63.158 0.00 0.00 0.00 4.26
4040 5123 1.279271 AGAGCACAACACCTATGGTCC 59.721 52.381 0.00 0.00 40.85 4.46
4045 5128 1.002773 ACAACACCTATGGTCCGAACC 59.997 52.381 0.00 0.00 46.66 3.62
4077 5160 3.719871 TGTGGGTTTAGAGCTGAGGATA 58.280 45.455 0.00 0.00 0.00 2.59
4080 5163 2.037902 GGGTTTAGAGCTGAGGATAGGC 59.962 54.545 0.00 0.00 0.00 3.93
4094 5177 3.460857 GATAGGCGATCCAAAGTCACT 57.539 47.619 0.00 0.00 33.74 3.41
4100 5183 1.879380 CGATCCAAAGTCACTTGCCAA 59.121 47.619 0.00 0.00 0.00 4.52
4110 5193 5.453567 AGTCACTTGCCAAAGGAAAATAC 57.546 39.130 0.00 0.00 37.76 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
126 133 8.472007 AGAATACATTATTAATTTCCCCGCAA 57.528 30.769 0.00 0.00 0.00 4.85
127 134 8.472007 AAGAATACATTATTAATTTCCCCGCA 57.528 30.769 0.00 0.00 0.00 5.69
317 342 4.461198 ACTTCAAGTACTGGGGTGAAAAG 58.539 43.478 8.63 1.93 30.03 2.27
429 454 2.226330 AGTAACAAAGCGGTTGCATCA 58.774 42.857 0.00 0.00 46.23 3.07
433 458 2.381589 GTCAAGTAACAAAGCGGTTGC 58.618 47.619 0.00 1.75 41.31 4.17
437 462 1.804748 GGAGGTCAAGTAACAAAGCGG 59.195 52.381 0.00 0.00 0.00 5.52
581 624 2.302445 AGAAAGCTGTGTGCATCTCTCT 59.698 45.455 0.00 0.00 45.94 3.10
585 628 2.855209 AGAGAAAGCTGTGTGCATCT 57.145 45.000 0.00 0.00 45.94 2.90
596 640 1.332065 GGCCTCGCAATAAGAGAAAGC 59.668 52.381 0.00 0.00 37.93 3.51
598 642 3.009723 CAAGGCCTCGCAATAAGAGAAA 58.990 45.455 5.23 0.00 37.93 2.52
603 647 1.737838 TGTCAAGGCCTCGCAATAAG 58.262 50.000 5.23 0.00 0.00 1.73
671 734 0.665835 TTGCGGTTGTTGTAGGCTTG 59.334 50.000 0.00 0.00 0.00 4.01
673 736 0.107831 TCTTGCGGTTGTTGTAGGCT 59.892 50.000 0.00 0.00 0.00 4.58
674 737 0.948678 TTCTTGCGGTTGTTGTAGGC 59.051 50.000 0.00 0.00 0.00 3.93
675 738 3.701532 TTTTCTTGCGGTTGTTGTAGG 57.298 42.857 0.00 0.00 0.00 3.18
676 739 7.867445 AATATTTTTCTTGCGGTTGTTGTAG 57.133 32.000 0.00 0.00 0.00 2.74
677 740 8.350722 TGTAATATTTTTCTTGCGGTTGTTGTA 58.649 29.630 0.00 0.00 0.00 2.41
678 741 7.203910 TGTAATATTTTTCTTGCGGTTGTTGT 58.796 30.769 0.00 0.00 0.00 3.32
679 742 7.630470 TGTAATATTTTTCTTGCGGTTGTTG 57.370 32.000 0.00 0.00 0.00 3.33
680 743 7.148656 GCATGTAATATTTTTCTTGCGGTTGTT 60.149 33.333 0.00 0.00 0.00 2.83
724 789 3.553105 GGATGACGGTCCGTTAACATAAC 59.447 47.826 19.95 10.02 41.37 1.89
781 849 7.308450 TCTATGGATTCTGGGTCAAATCTAG 57.692 40.000 0.00 0.00 33.36 2.43
803 875 1.391157 GCGAGGAGGACTGAGCATCT 61.391 60.000 0.00 0.00 34.92 2.90
806 878 3.443925 CGCGAGGAGGACTGAGCA 61.444 66.667 0.00 0.00 31.84 4.26
821 893 3.195698 GGTTGGATCCGTCAGCGC 61.196 66.667 7.39 0.00 36.67 5.92
838 910 7.608153 TGTACATGTTATATCCAAGGATACCG 58.392 38.462 10.85 0.00 39.56 4.02
939 1431 5.928264 ACCATGCTGCTATGTTTTTCTTTTC 59.072 36.000 0.00 0.00 0.00 2.29
944 1436 5.818136 TCTACCATGCTGCTATGTTTTTC 57.182 39.130 0.00 0.00 0.00 2.29
945 1437 6.588719 TTTCTACCATGCTGCTATGTTTTT 57.411 33.333 0.00 0.00 0.00 1.94
946 1438 6.780457 ATTTCTACCATGCTGCTATGTTTT 57.220 33.333 0.00 0.00 0.00 2.43
947 1439 7.941238 AGATATTTCTACCATGCTGCTATGTTT 59.059 33.333 0.00 0.00 0.00 2.83
948 1440 7.456725 AGATATTTCTACCATGCTGCTATGTT 58.543 34.615 0.00 0.00 0.00 2.71
949 1441 7.013823 AGATATTTCTACCATGCTGCTATGT 57.986 36.000 0.00 0.00 0.00 2.29
976 1468 4.022416 TGCCTGCAAAATACGAGTCAATTT 60.022 37.500 0.00 0.00 0.00 1.82
1053 1546 5.412526 TTGTTTTATCACGACTCAACACC 57.587 39.130 0.00 0.00 0.00 4.16
1196 1694 5.065218 GCAAGTGTATTTGAGAGGTGGTATG 59.935 44.000 0.00 0.00 0.00 2.39
1215 1713 5.611374 TCTTAGCTAACTGAACTTGCAAGT 58.389 37.500 26.36 26.36 42.04 3.16
1236 1737 2.491693 CACACCCCGCATTGTTAAATCT 59.508 45.455 0.00 0.00 0.00 2.40
1237 1738 2.874849 CACACCCCGCATTGTTAAATC 58.125 47.619 0.00 0.00 0.00 2.17
1238 1739 1.067213 GCACACCCCGCATTGTTAAAT 60.067 47.619 0.00 0.00 0.00 1.40
1239 1740 0.315568 GCACACCCCGCATTGTTAAA 59.684 50.000 0.00 0.00 0.00 1.52
1240 1741 0.538516 AGCACACCCCGCATTGTTAA 60.539 50.000 0.00 0.00 0.00 2.01
1241 1742 0.538516 AAGCACACCCCGCATTGTTA 60.539 50.000 0.00 0.00 0.00 2.41
1242 1743 1.805428 GAAGCACACCCCGCATTGTT 61.805 55.000 0.00 0.00 0.00 2.83
1243 1744 2.203480 AAGCACACCCCGCATTGT 60.203 55.556 0.00 0.00 0.00 2.71
1244 1745 1.804396 TTGAAGCACACCCCGCATTG 61.804 55.000 0.00 0.00 0.00 2.82
1245 1746 1.530419 TTGAAGCACACCCCGCATT 60.530 52.632 0.00 0.00 0.00 3.56
1246 1747 2.115052 TTGAAGCACACCCCGCAT 59.885 55.556 0.00 0.00 0.00 4.73
1247 1748 2.904866 GTTGAAGCACACCCCGCA 60.905 61.111 0.00 0.00 0.00 5.69
1248 1749 1.805428 ATTGTTGAAGCACACCCCGC 61.805 55.000 0.00 0.00 0.00 6.13
1249 1750 0.039256 CATTGTTGAAGCACACCCCG 60.039 55.000 0.00 0.00 0.00 5.73
1250 1751 1.270550 CTCATTGTTGAAGCACACCCC 59.729 52.381 0.00 0.00 0.00 4.95
1251 1752 2.229792 TCTCATTGTTGAAGCACACCC 58.770 47.619 0.00 0.00 0.00 4.61
1252 1753 3.829948 CATCTCATTGTTGAAGCACACC 58.170 45.455 0.00 0.00 0.00 4.16
1253 1754 3.057736 AGCATCTCATTGTTGAAGCACAC 60.058 43.478 10.35 0.00 30.71 3.82
1254 1755 3.151554 AGCATCTCATTGTTGAAGCACA 58.848 40.909 10.35 0.00 30.71 4.57
1255 1756 3.844577 AGCATCTCATTGTTGAAGCAC 57.155 42.857 10.35 0.00 30.71 4.40
1256 1757 3.613193 GCAAGCATCTCATTGTTGAAGCA 60.613 43.478 10.35 0.00 30.71 3.91
1257 1758 2.921754 GCAAGCATCTCATTGTTGAAGC 59.078 45.455 0.00 0.00 0.00 3.86
1258 1759 4.082949 TCTGCAAGCATCTCATTGTTGAAG 60.083 41.667 0.00 0.00 0.00 3.02
1261 1762 3.439129 TCTCTGCAAGCATCTCATTGTTG 59.561 43.478 0.00 0.00 0.00 3.33
1316 1829 6.976088 TGTATGAAAGGTGGTTAACATGTTG 58.024 36.000 21.42 0.00 0.00 3.33
1347 1860 1.099879 GGAGCATGTGGGTCATCAGC 61.100 60.000 0.00 0.00 45.90 4.26
1380 1896 5.124617 GGAATAGCTCCTCCTTGAAAACTTG 59.875 44.000 6.74 0.00 41.61 3.16
1431 1947 3.067106 GGTCGCAAGTTCAATTCTCTGA 58.933 45.455 0.00 0.00 39.48 3.27
1432 1948 3.070018 AGGTCGCAAGTTCAATTCTCTG 58.930 45.455 0.00 0.00 39.48 3.35
1434 1950 4.467735 GAAAGGTCGCAAGTTCAATTCTC 58.532 43.478 0.00 0.00 39.48 2.87
1436 1952 3.004315 TGGAAAGGTCGCAAGTTCAATTC 59.996 43.478 0.00 0.00 39.48 2.17
1437 1953 2.955660 TGGAAAGGTCGCAAGTTCAATT 59.044 40.909 0.00 0.00 39.48 2.32
1438 1954 2.293399 GTGGAAAGGTCGCAAGTTCAAT 59.707 45.455 0.00 0.00 39.48 2.57
1439 1955 1.673920 GTGGAAAGGTCGCAAGTTCAA 59.326 47.619 0.00 0.00 39.48 2.69
1443 1959 1.597027 CGGTGGAAAGGTCGCAAGT 60.597 57.895 0.00 0.00 39.48 3.16
1444 1960 2.325082 CCGGTGGAAAGGTCGCAAG 61.325 63.158 0.00 0.00 0.00 4.01
1445 1961 2.281208 CCGGTGGAAAGGTCGCAA 60.281 61.111 0.00 0.00 0.00 4.85
1463 1979 2.284699 ACTCCCTCAACCTCCCCG 60.285 66.667 0.00 0.00 0.00 5.73
1465 1981 1.652947 TAACACTCCCTCAACCTCCC 58.347 55.000 0.00 0.00 0.00 4.30
1466 1982 3.134262 GGTATAACACTCCCTCAACCTCC 59.866 52.174 0.00 0.00 0.00 4.30
1467 1983 3.773119 TGGTATAACACTCCCTCAACCTC 59.227 47.826 0.00 0.00 0.00 3.85
1468 1984 3.518303 GTGGTATAACACTCCCTCAACCT 59.482 47.826 13.87 0.00 38.32 3.50
1469 1985 3.870274 GTGGTATAACACTCCCTCAACC 58.130 50.000 13.87 0.00 38.32 3.77
1479 1995 4.523558 CCTCCTAGCCTAGTGGTATAACAC 59.476 50.000 13.28 13.28 41.63 3.32
1480 1996 4.169461 ACCTCCTAGCCTAGTGGTATAACA 59.831 45.833 10.71 0.00 31.79 2.41
1481 1997 4.738685 ACCTCCTAGCCTAGTGGTATAAC 58.261 47.826 10.71 0.00 31.79 1.89
1482 1998 4.417854 TGACCTCCTAGCCTAGTGGTATAA 59.582 45.833 11.95 1.99 33.07 0.98
1483 1999 3.985452 TGACCTCCTAGCCTAGTGGTATA 59.015 47.826 11.95 4.47 33.07 1.47
1484 2000 2.789992 TGACCTCCTAGCCTAGTGGTAT 59.210 50.000 11.95 0.00 33.07 2.73
1485 2001 2.211532 TGACCTCCTAGCCTAGTGGTA 58.788 52.381 11.95 2.00 33.07 3.25
1486 2002 1.008403 TGACCTCCTAGCCTAGTGGT 58.992 55.000 11.84 11.84 34.76 4.16
1487 2003 2.390225 ATGACCTCCTAGCCTAGTGG 57.610 55.000 0.00 2.57 0.00 4.00
1488 2004 4.446371 CAAAATGACCTCCTAGCCTAGTG 58.554 47.826 0.00 0.00 0.00 2.74
1489 2005 3.456277 CCAAAATGACCTCCTAGCCTAGT 59.544 47.826 0.00 0.00 0.00 2.57
1490 2006 3.456277 ACCAAAATGACCTCCTAGCCTAG 59.544 47.826 0.00 0.00 0.00 3.02
1491 2007 3.460825 ACCAAAATGACCTCCTAGCCTA 58.539 45.455 0.00 0.00 0.00 3.93
1492 2008 2.279173 ACCAAAATGACCTCCTAGCCT 58.721 47.619 0.00 0.00 0.00 4.58
1493 2009 2.808906 ACCAAAATGACCTCCTAGCC 57.191 50.000 0.00 0.00 0.00 3.93
1494 2010 5.710567 AGTTTAACCAAAATGACCTCCTAGC 59.289 40.000 0.00 0.00 0.00 3.42
1495 2011 6.715264 ACAGTTTAACCAAAATGACCTCCTAG 59.285 38.462 4.75 0.00 41.17 3.02
1496 2012 6.488683 CACAGTTTAACCAAAATGACCTCCTA 59.511 38.462 4.75 0.00 41.17 2.94
1497 2013 5.301805 CACAGTTTAACCAAAATGACCTCCT 59.698 40.000 4.75 0.00 41.17 3.69
1498 2014 5.508994 CCACAGTTTAACCAAAATGACCTCC 60.509 44.000 4.75 0.00 41.17 4.30
1499 2015 5.068591 ACCACAGTTTAACCAAAATGACCTC 59.931 40.000 4.75 0.00 41.17 3.85
1500 2016 4.959839 ACCACAGTTTAACCAAAATGACCT 59.040 37.500 4.75 0.00 41.17 3.85
1501 2017 5.270893 ACCACAGTTTAACCAAAATGACC 57.729 39.130 4.75 0.00 41.17 4.02
1502 2018 6.334202 TGAACCACAGTTTAACCAAAATGAC 58.666 36.000 4.75 0.00 41.17 3.06
1503 2019 6.531503 TGAACCACAGTTTAACCAAAATGA 57.468 33.333 4.75 0.00 41.17 2.57
1504 2020 6.591834 TGTTGAACCACAGTTTAACCAAAATG 59.408 34.615 10.04 0.00 46.54 2.32
1505 2021 6.702329 TGTTGAACCACAGTTTAACCAAAAT 58.298 32.000 10.04 0.00 46.54 1.82
1506 2022 6.097915 TGTTGAACCACAGTTTAACCAAAA 57.902 33.333 10.04 0.00 46.54 2.44
1507 2023 5.723672 TGTTGAACCACAGTTTAACCAAA 57.276 34.783 10.04 0.00 46.54 3.28
1508 2024 5.186021 ACATGTTGAACCACAGTTTAACCAA 59.814 36.000 10.04 0.00 46.54 3.67
1509 2025 4.707448 ACATGTTGAACCACAGTTTAACCA 59.293 37.500 10.04 1.60 46.54 3.67
1510 2026 5.257082 ACATGTTGAACCACAGTTTAACC 57.743 39.130 10.04 0.00 46.54 2.85
1511 2027 9.953697 TTTATACATGTTGAACCACAGTTTAAC 57.046 29.630 2.30 6.64 46.99 2.01
1516 2032 9.905713 AGATATTTATACATGTTGAACCACAGT 57.094 29.630 2.30 0.00 0.00 3.55
1568 2084 9.372369 ACAACTTTTGGACGAAATTTAAATCAA 57.628 25.926 0.10 0.00 34.12 2.57
1569 2085 8.934507 ACAACTTTTGGACGAAATTTAAATCA 57.065 26.923 0.10 0.00 34.12 2.57
1570 2086 9.843874 GAACAACTTTTGGACGAAATTTAAATC 57.156 29.630 0.10 0.00 34.12 2.17
1571 2087 9.594478 AGAACAACTTTTGGACGAAATTTAAAT 57.406 25.926 0.00 0.00 34.12 1.40
1572 2088 8.865001 CAGAACAACTTTTGGACGAAATTTAAA 58.135 29.630 0.00 0.00 34.12 1.52
1573 2089 8.030106 ACAGAACAACTTTTGGACGAAATTTAA 58.970 29.630 0.00 0.00 34.12 1.52
1574 2090 7.540299 ACAGAACAACTTTTGGACGAAATTTA 58.460 30.769 0.00 0.00 34.12 1.40
1575 2091 6.394809 ACAGAACAACTTTTGGACGAAATTT 58.605 32.000 0.00 0.00 34.12 1.82
1576 2092 5.961272 ACAGAACAACTTTTGGACGAAATT 58.039 33.333 0.00 0.00 34.12 1.82
1577 2093 5.576447 ACAGAACAACTTTTGGACGAAAT 57.424 34.783 0.00 0.00 34.12 2.17
1578 2094 6.687081 ATACAGAACAACTTTTGGACGAAA 57.313 33.333 0.00 0.00 34.12 3.46
1579 2095 6.687081 AATACAGAACAACTTTTGGACGAA 57.313 33.333 0.00 0.00 34.12 3.85
1580 2096 6.687081 AAATACAGAACAACTTTTGGACGA 57.313 33.333 0.00 0.00 34.12 4.20
1581 2097 7.608755 CAAAAATACAGAACAACTTTTGGACG 58.391 34.615 0.00 0.00 32.65 4.79
1585 2101 8.387354 GGAACCAAAAATACAGAACAACTTTTG 58.613 33.333 0.00 0.00 34.87 2.44
1586 2102 8.318412 AGGAACCAAAAATACAGAACAACTTTT 58.682 29.630 0.00 0.00 0.00 2.27
1587 2103 7.763985 CAGGAACCAAAAATACAGAACAACTTT 59.236 33.333 0.00 0.00 0.00 2.66
1588 2104 7.093509 ACAGGAACCAAAAATACAGAACAACTT 60.094 33.333 0.00 0.00 0.00 2.66
1589 2105 6.379988 ACAGGAACCAAAAATACAGAACAACT 59.620 34.615 0.00 0.00 0.00 3.16
1590 2106 6.475402 CACAGGAACCAAAAATACAGAACAAC 59.525 38.462 0.00 0.00 0.00 3.32
1591 2107 6.568869 CACAGGAACCAAAAATACAGAACAA 58.431 36.000 0.00 0.00 0.00 2.83
1592 2108 5.451242 GCACAGGAACCAAAAATACAGAACA 60.451 40.000 0.00 0.00 0.00 3.18
1593 2109 4.982295 GCACAGGAACCAAAAATACAGAAC 59.018 41.667 0.00 0.00 0.00 3.01
1594 2110 4.892934 AGCACAGGAACCAAAAATACAGAA 59.107 37.500 0.00 0.00 0.00 3.02
1595 2111 4.469657 AGCACAGGAACCAAAAATACAGA 58.530 39.130 0.00 0.00 0.00 3.41
1596 2112 4.853924 AGCACAGGAACCAAAAATACAG 57.146 40.909 0.00 0.00 0.00 2.74
1597 2113 5.010213 GGTTAGCACAGGAACCAAAAATACA 59.990 40.000 0.00 0.00 43.91 2.29
1598 2114 5.466819 GGTTAGCACAGGAACCAAAAATAC 58.533 41.667 0.00 0.00 43.91 1.89
1599 2115 4.216687 CGGTTAGCACAGGAACCAAAAATA 59.783 41.667 4.79 0.00 44.58 1.40
1600 2116 3.005367 CGGTTAGCACAGGAACCAAAAAT 59.995 43.478 4.79 0.00 44.58 1.82
1601 2117 2.359531 CGGTTAGCACAGGAACCAAAAA 59.640 45.455 4.79 0.00 44.58 1.94
1602 2118 1.950909 CGGTTAGCACAGGAACCAAAA 59.049 47.619 4.79 0.00 44.58 2.44
1603 2119 1.141254 TCGGTTAGCACAGGAACCAAA 59.859 47.619 4.79 0.00 44.58 3.28
1604 2120 0.759959 TCGGTTAGCACAGGAACCAA 59.240 50.000 4.79 0.00 44.58 3.67
1605 2121 0.320374 CTCGGTTAGCACAGGAACCA 59.680 55.000 4.79 0.00 44.58 3.67
1606 2122 0.320697 ACTCGGTTAGCACAGGAACC 59.679 55.000 0.00 0.00 41.52 3.62
1607 2123 3.521947 ATACTCGGTTAGCACAGGAAC 57.478 47.619 0.00 0.00 0.00 3.62
1608 2124 4.546829 AAATACTCGGTTAGCACAGGAA 57.453 40.909 0.00 0.00 0.00 3.36
1609 2125 4.250464 CAAAATACTCGGTTAGCACAGGA 58.750 43.478 0.00 0.00 0.00 3.86
1610 2126 3.374058 CCAAAATACTCGGTTAGCACAGG 59.626 47.826 0.00 0.00 0.00 4.00
1611 2127 4.000988 ACCAAAATACTCGGTTAGCACAG 58.999 43.478 0.00 0.00 0.00 3.66
1612 2128 3.749088 CACCAAAATACTCGGTTAGCACA 59.251 43.478 0.00 0.00 0.00 4.57
1613 2129 3.425758 GCACCAAAATACTCGGTTAGCAC 60.426 47.826 0.00 0.00 0.00 4.40
1614 2130 2.745281 GCACCAAAATACTCGGTTAGCA 59.255 45.455 0.00 0.00 0.00 3.49
1615 2131 2.096980 GGCACCAAAATACTCGGTTAGC 59.903 50.000 0.00 0.00 0.00 3.09
1665 2181 6.530181 GTGTTTGTAGAGAAACCAAGGTTTTG 59.470 38.462 17.56 0.00 46.80 2.44
1666 2182 6.350696 GGTGTTTGTAGAGAAACCAAGGTTTT 60.351 38.462 17.56 8.48 46.80 2.43
1668 2184 4.643334 GGTGTTTGTAGAGAAACCAAGGTT 59.357 41.667 0.00 0.00 40.45 3.50
1669 2185 4.204799 GGTGTTTGTAGAGAAACCAAGGT 58.795 43.478 0.37 0.00 35.34 3.50
1670 2186 4.204012 TGGTGTTTGTAGAGAAACCAAGG 58.796 43.478 0.00 0.00 34.85 3.61
1671 2187 5.530915 TCATGGTGTTTGTAGAGAAACCAAG 59.469 40.000 0.00 0.00 40.82 3.61
1672 2188 5.441500 TCATGGTGTTTGTAGAGAAACCAA 58.558 37.500 0.00 0.00 40.82 3.67
1673 2189 5.042463 TCATGGTGTTTGTAGAGAAACCA 57.958 39.130 0.00 0.00 41.63 3.67
1674 2190 6.575162 AATCATGGTGTTTGTAGAGAAACC 57.425 37.500 0.00 0.00 35.34 3.27
1762 2575 4.657077 CAGCATGCATGAACGACG 57.343 55.556 30.64 6.93 0.00 5.12
1833 2648 4.771114 TTCATCCTTTGATATGTCCCGT 57.229 40.909 0.00 0.00 33.34 5.28
1895 2710 5.692928 AGAAATCCCTCCAATCAATCTCAG 58.307 41.667 0.00 0.00 0.00 3.35
2004 2819 3.170791 TCCTTCTGCTGATCGATCAAC 57.829 47.619 27.09 23.25 36.18 3.18
2016 2831 1.622232 GCGCAATTCTTTCCTTCTGC 58.378 50.000 0.30 0.00 0.00 4.26
2130 2946 8.596781 ACTTCCTCTGTACACTAATGTAAGAT 57.403 34.615 0.00 0.00 42.99 2.40
2302 3145 5.150715 AGTATCTGCACCCTCTATGATTGA 58.849 41.667 0.00 0.00 0.00 2.57
2409 3253 0.036306 CCCGAGGGCAACAAGTACTT 59.964 55.000 1.12 1.12 39.74 2.24
2410 3254 1.677552 CCCGAGGGCAACAAGTACT 59.322 57.895 0.00 0.00 39.74 2.73
2411 3255 1.376812 CCCCGAGGGCAACAAGTAC 60.377 63.158 1.76 0.00 35.35 2.73
2422 3266 2.757868 TGTTAAAAATGCATCCCCGAGG 59.242 45.455 0.00 0.00 0.00 4.63
2721 3596 5.518128 CACTTCACTTCCGTTATGATGAGAG 59.482 44.000 0.00 0.00 0.00 3.20
2722 3597 5.410924 CACTTCACTTCCGTTATGATGAGA 58.589 41.667 0.00 0.00 0.00 3.27
2821 3733 3.567164 ACTCTTTCTTGTCCATGTTGCAG 59.433 43.478 0.00 0.00 0.00 4.41
2890 3802 2.741985 TCCGCGACGTCGAACCTA 60.742 61.111 39.74 17.23 43.02 3.08
3015 3927 1.374947 CCCTCCTTGAGCGTCCAAA 59.625 57.895 0.00 0.00 0.00 3.28
3016 3928 3.068881 CCCTCCTTGAGCGTCCAA 58.931 61.111 0.00 0.00 0.00 3.53
3162 4074 5.514169 TGCACCCATATTATCTTGTTTGGA 58.486 37.500 0.00 0.00 0.00 3.53
3207 4119 9.804758 AAACAGTGTAAAAATCCGAACAAATTA 57.195 25.926 0.00 0.00 0.00 1.40
3238 4150 1.436195 GCTCCGGCGCAATAATCACA 61.436 55.000 12.53 0.00 0.00 3.58
3240 4152 0.463654 AAGCTCCGGCGCAATAATCA 60.464 50.000 20.31 0.00 44.37 2.57
3270 4182 3.377172 CAGTCTTGTTTTTGGTTCCGACT 59.623 43.478 0.00 0.00 0.00 4.18
3285 4197 1.269569 TGTGACCGTGCTACAGTCTTG 60.270 52.381 0.00 0.00 0.00 3.02
3295 4207 2.974698 AAGCAGCTGTGACCGTGC 60.975 61.111 16.64 0.00 36.10 5.34
3387 4330 6.598064 ACATTGTTCCTTAGTAAAAGATCCCG 59.402 38.462 0.00 0.00 0.00 5.14
3540 4609 4.510340 AGACTTTAACGCTGTGGTTACTTG 59.490 41.667 0.00 0.00 32.42 3.16
3552 4621 3.042887 CTGGTTTGCAAGACTTTAACGC 58.957 45.455 0.00 0.00 0.00 4.84
3565 4634 7.430441 TGTTTCCTTTTTACTATCTGGTTTGC 58.570 34.615 0.00 0.00 0.00 3.68
3591 4660 1.875009 TCGAGTCGCGATATGTACCT 58.125 50.000 14.06 1.54 45.59 3.08
3601 4670 2.610308 CGCTCATTTCGAGTCGCG 59.390 61.111 7.92 0.00 44.33 5.87
3604 4673 0.458543 TCCTGCGCTCATTTCGAGTC 60.459 55.000 9.73 0.00 44.33 3.36
3605 4674 0.037326 TTCCTGCGCTCATTTCGAGT 60.037 50.000 9.73 0.00 44.33 4.18
3606 4675 0.371645 GTTCCTGCGCTCATTTCGAG 59.628 55.000 9.73 0.00 45.37 4.04
3607 4676 0.320334 TGTTCCTGCGCTCATTTCGA 60.320 50.000 9.73 0.00 0.00 3.71
3608 4677 0.729116 ATGTTCCTGCGCTCATTTCG 59.271 50.000 9.73 0.00 0.00 3.46
3609 4678 2.927553 AATGTTCCTGCGCTCATTTC 57.072 45.000 9.73 0.00 0.00 2.17
3610 4679 4.009675 TCTTAATGTTCCTGCGCTCATTT 58.990 39.130 9.73 0.00 33.48 2.32
3611 4680 3.609853 TCTTAATGTTCCTGCGCTCATT 58.390 40.909 9.73 13.34 35.24 2.57
3636 4706 2.232298 CTCCCGAGTCTCACCAAGGC 62.232 65.000 0.00 0.00 0.00 4.35
3642 4712 1.379309 AGGAGCTCCCGAGTCTCAC 60.379 63.158 29.54 0.00 40.87 3.51
3665 4735 7.991460 TCTCAAGATCAAACATCTTCATGCTAT 59.009 33.333 0.00 0.00 36.32 2.97
3670 4740 7.400439 TCCTTCTCAAGATCAAACATCTTCAT 58.600 34.615 0.00 0.00 36.32 2.57
3700 4770 4.014406 AGAATGATTGTGAAGCAGCATCA 58.986 39.130 0.00 0.00 31.29 3.07
3809 4891 4.890088 TGGAATACTCGCAACAAACTAGT 58.110 39.130 0.00 0.00 0.00 2.57
3865 4947 1.139520 GCCAACAATGCCGCTTAGG 59.860 57.895 0.00 0.00 44.97 2.69
3873 4955 0.390209 ATTCTTGCGGCCAACAATGC 60.390 50.000 2.24 0.00 0.00 3.56
3874 4956 1.727880 CAATTCTTGCGGCCAACAATG 59.272 47.619 2.24 0.00 0.00 2.82
3875 4957 1.344114 ACAATTCTTGCGGCCAACAAT 59.656 42.857 2.24 0.00 0.00 2.71
3884 4966 2.236690 CGCTTCTCAACAATTCTTGCG 58.763 47.619 0.00 0.00 35.22 4.85
3931 5013 2.364970 TGTGTTTTGGGCAATCTTGGAG 59.635 45.455 0.00 0.00 0.00 3.86
3942 5024 1.408702 CCTGTGGAGTTGTGTTTTGGG 59.591 52.381 0.00 0.00 0.00 4.12
3961 5043 2.149973 ATGTGCTCCAAGGAAATCCC 57.850 50.000 0.00 0.00 36.42 3.85
3969 5051 8.415553 TCATATTATTTTCCAATGTGCTCCAAG 58.584 33.333 0.00 0.00 0.00 3.61
3971 5053 7.894753 TCATATTATTTTCCAATGTGCTCCA 57.105 32.000 0.00 0.00 0.00 3.86
4010 5093 1.208052 TGTTGTGCTCTCTATGGCTCC 59.792 52.381 0.00 0.00 0.00 4.70
4017 5100 3.441101 ACCATAGGTGTTGTGCTCTCTA 58.559 45.455 0.00 0.00 32.98 2.43
4019 5102 2.622436 GACCATAGGTGTTGTGCTCTC 58.378 52.381 0.00 0.00 35.25 3.20
4025 5108 1.002773 GGTTCGGACCATAGGTGTTGT 59.997 52.381 8.43 0.00 45.77 3.32
4040 5123 4.877282 ACCCACAAAAATGTTATGGTTCG 58.123 39.130 0.00 0.00 0.00 3.95
4045 5128 7.329226 CAGCTCTAAACCCACAAAAATGTTATG 59.671 37.037 0.00 0.00 0.00 1.90
4077 5160 1.813513 CAAGTGACTTTGGATCGCCT 58.186 50.000 0.00 0.00 34.31 5.52
4080 5163 1.522668 TGGCAAGTGACTTTGGATCG 58.477 50.000 0.00 0.00 0.00 3.69
4090 5173 4.138290 TCGTATTTTCCTTTGGCAAGTGA 58.862 39.130 0.00 0.00 0.00 3.41
4092 5175 4.583073 AGTTCGTATTTTCCTTTGGCAAGT 59.417 37.500 0.00 0.00 0.00 3.16
4094 5177 5.523438 AAGTTCGTATTTTCCTTTGGCAA 57.477 34.783 0.00 0.00 0.00 4.52
4100 5183 4.765339 CCCCTCAAAGTTCGTATTTTCCTT 59.235 41.667 0.00 0.00 0.00 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.