Multiple sequence alignment - TraesCS2A01G429100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G429100 chr2A 100.000 4542 0 0 1 4542 682487148 682491689 0.000000e+00 8388.0
1 TraesCS2A01G429100 chr2A 83.410 217 34 2 4247 4462 682480663 682480878 2.770000e-47 200.0
2 TraesCS2A01G429100 chr2A 94.595 111 6 0 2922 3032 674046959 674047069 6.040000e-39 172.0
3 TraesCS2A01G429100 chr2A 91.870 123 8 2 2910 3031 763687448 763687569 2.170000e-38 171.0
4 TraesCS2A01G429100 chr2D 93.880 1536 66 12 3028 4542 539223973 539225501 0.000000e+00 2290.0
5 TraesCS2A01G429100 chr2D 86.399 1294 87 28 1 1245 539215613 539216866 0.000000e+00 1332.0
6 TraesCS2A01G429100 chr2D 91.375 858 38 14 1467 2290 539222643 539223498 0.000000e+00 1142.0
7 TraesCS2A01G429100 chr2D 94.752 343 15 3 2590 2929 539223638 539223980 8.650000e-147 531.0
8 TraesCS2A01G429100 chr2D 94.170 223 9 2 1241 1461 539217108 539217328 2.020000e-88 337.0
9 TraesCS2A01G429100 chr2D 86.175 217 28 2 4247 4462 539167364 539167579 2.730000e-57 233.0
10 TraesCS2A01G429100 chr2D 94.958 119 6 0 2473 2591 377306009 377306127 2.160000e-43 187.0
11 TraesCS2A01G429100 chr2D 92.857 126 8 1 2468 2593 441750506 441750630 1.000000e-41 182.0
12 TraesCS2A01G429100 chr2D 83.962 106 14 3 209 312 473272639 473272743 1.040000e-16 99.0
13 TraesCS2A01G429100 chr2B 91.786 1534 83 16 3028 4542 643089799 643091308 0.000000e+00 2095.0
14 TraesCS2A01G429100 chr2B 90.036 1104 65 7 1405 2473 643088369 643089462 0.000000e+00 1387.0
15 TraesCS2A01G429100 chr2B 89.957 697 35 14 587 1260 643081040 643081724 0.000000e+00 867.0
16 TraesCS2A01G429100 chr2B 92.635 353 22 4 2590 2939 643089464 643089815 5.240000e-139 505.0
17 TraesCS2A01G429100 chr2B 84.725 491 62 7 1 480 643054615 643055103 3.180000e-131 479.0
18 TraesCS2A01G429100 chr2B 85.714 217 29 2 4247 4462 642977645 642977860 1.270000e-55 228.0
19 TraesCS2A01G429100 chr2B 88.199 161 8 3 1262 1411 643081768 643081928 1.000000e-41 182.0
20 TraesCS2A01G429100 chr2B 92.188 128 9 1 2466 2592 587232339 587232212 3.610000e-41 180.0
21 TraesCS2A01G429100 chr2B 89.855 138 12 2 2473 2609 157990816 157990680 4.670000e-40 176.0
22 TraesCS2A01G429100 chr2B 92.941 85 4 2 491 575 643080920 643081002 6.170000e-24 122.0
23 TraesCS2A01G429100 chr2B 97.297 37 1 0 49 85 797436062 797436026 3.790000e-06 63.9
24 TraesCS2A01G429100 chr1A 82.342 521 66 14 3074 3585 12142989 12142486 3.250000e-116 429.0
25 TraesCS2A01G429100 chr1A 83.280 311 46 3 2590 2894 12143379 12143069 9.620000e-72 281.0
26 TraesCS2A01G429100 chr1A 94.262 122 7 0 2469 2590 23098987 23099108 2.160000e-43 187.0
27 TraesCS2A01G429100 chr1A 86.620 142 17 2 2892 3031 496258443 496258302 6.080000e-34 156.0
28 TraesCS2A01G429100 chr1A 86.420 81 11 0 2746 2826 12168594 12168674 6.260000e-14 89.8
29 TraesCS2A01G429100 chr1D 83.478 460 58 10 3074 3525 10399113 10398664 3.270000e-111 412.0
30 TraesCS2A01G429100 chr1D 81.905 315 47 7 2590 2894 10399509 10399195 1.620000e-64 257.0
31 TraesCS2A01G429100 chr1D 83.575 207 29 2 2723 2924 10442750 10442956 6.000000e-44 189.0
32 TraesCS2A01G429100 chr1D 84.746 177 22 2 2723 2894 10538715 10538891 6.040000e-39 172.0
33 TraesCS2A01G429100 chr1D 94.444 36 2 0 49 84 37416466 37416501 6.350000e-04 56.5
34 TraesCS2A01G429100 chr1B 81.553 515 66 18 3074 3575 15439875 15439377 9.160000e-107 398.0
35 TraesCS2A01G429100 chr1B 88.258 264 31 0 3262 3525 15383476 15383213 2.640000e-82 316.0
36 TraesCS2A01G429100 chr1B 88.258 264 31 0 3262 3525 15389467 15389204 2.640000e-82 316.0
37 TraesCS2A01G429100 chr1B 82.060 301 43 6 2605 2896 15440249 15439951 3.510000e-61 246.0
38 TraesCS2A01G429100 chr1B 80.769 104 16 4 209 311 404901669 404901769 1.350000e-10 78.7
39 TraesCS2A01G429100 chr1B 92.857 42 3 0 49 90 619632499 619632458 1.360000e-05 62.1
40 TraesCS2A01G429100 chr3D 95.726 117 5 0 2473 2589 337959625 337959509 6.000000e-44 189.0
41 TraesCS2A01G429100 chr3D 91.729 133 10 1 2458 2589 607000522 607000654 2.790000e-42 183.0
42 TraesCS2A01G429100 chr3D 84.337 83 9 2 10 90 415677753 415677833 1.350000e-10 78.7
43 TraesCS2A01G429100 chr6B 92.800 125 9 0 2473 2597 256326811 256326687 1.000000e-41 182.0
44 TraesCS2A01G429100 chr6B 79.612 103 17 3 210 310 64309828 64309728 2.270000e-08 71.3
45 TraesCS2A01G429100 chr7A 92.742 124 6 2 2910 3031 139051636 139051514 4.670000e-40 176.0
46 TraesCS2A01G429100 chr7A 93.913 115 6 1 2922 3036 4212917 4213030 6.040000e-39 172.0
47 TraesCS2A01G429100 chr7A 90.323 124 10 2 2921 3044 21195745 21195624 1.310000e-35 161.0
48 TraesCS2A01G429100 chr5D 93.277 119 8 0 2472 2590 97387198 97387316 4.670000e-40 176.0
49 TraesCS2A01G429100 chr5D 84.615 65 8 2 29 91 426031465 426031529 3.790000e-06 63.9
50 TraesCS2A01G429100 chrUn 94.595 111 6 0 2925 3035 218481706 218481596 6.040000e-39 172.0
51 TraesCS2A01G429100 chr5A 93.805 113 7 0 2919 3031 169309770 169309882 2.170000e-38 171.0
52 TraesCS2A01G429100 chr3A 93.694 111 7 0 2921 3031 638776674 638776784 2.810000e-37 167.0
53 TraesCS2A01G429100 chr4A 76.531 196 41 5 148 340 80161164 80161357 8.040000e-18 102.0
54 TraesCS2A01G429100 chr4A 83.871 62 5 4 2442 2500 617050928 617050987 2.000000e-03 54.7
55 TraesCS2A01G429100 chr3B 78.107 169 24 8 2473 2629 778360357 778360190 1.350000e-15 95.3
56 TraesCS2A01G429100 chr4B 80.488 123 19 5 220 339 126546164 126546284 6.260000e-14 89.8
57 TraesCS2A01G429100 chr7D 97.436 39 1 0 49 87 592673573 592673611 2.930000e-07 67.6
58 TraesCS2A01G429100 chr5B 97.368 38 1 0 49 86 322559995 322559958 1.050000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G429100 chr2A 682487148 682491689 4541 False 8388.000000 8388 100.000000 1 4542 1 chr2A.!!$F3 4541
1 TraesCS2A01G429100 chr2D 539222643 539225501 2858 False 1321.000000 2290 93.335667 1467 4542 3 chr2D.!!$F6 3075
2 TraesCS2A01G429100 chr2D 539215613 539217328 1715 False 834.500000 1332 90.284500 1 1461 2 chr2D.!!$F5 1460
3 TraesCS2A01G429100 chr2B 643088369 643091308 2939 False 1329.000000 2095 91.485667 1405 4542 3 chr2B.!!$F4 3137
4 TraesCS2A01G429100 chr2B 643080920 643081928 1008 False 390.333333 867 90.365667 491 1411 3 chr2B.!!$F3 920
5 TraesCS2A01G429100 chr1A 12142486 12143379 893 True 355.000000 429 82.811000 2590 3585 2 chr1A.!!$R2 995
6 TraesCS2A01G429100 chr1D 10398664 10399509 845 True 334.500000 412 82.691500 2590 3525 2 chr1D.!!$R1 935
7 TraesCS2A01G429100 chr1B 15439377 15440249 872 True 322.000000 398 81.806500 2605 3575 2 chr1B.!!$R4 970

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
323 335 0.032952 TACGTGGTGGCAGTCTTGAC 59.967 55.0 0.00 0.0 0.00 3.18 F
685 733 0.107214 CCAAAGCGGCCCATCTAGAA 60.107 55.0 0.00 0.0 0.00 2.10 F
2494 2898 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.0 5.23 0.0 44.66 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1361 1722 0.320334 CATAGTGACACACGGGCACA 60.320 55.0 8.59 0.0 39.64 4.57 R
2473 2877 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.0 13.64 0.0 46.06 3.85 R
3544 3991 0.400213 ATCCCGCAAACAGGAACTCA 59.600 50.0 0.00 0.0 34.60 3.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 7.116948 CCCGTCATCATGCTTTACTCTATAAAG 59.883 40.741 2.67 2.67 37.53 1.85
92 93 1.269413 CGAACACTTGTCGGGTGTACT 60.269 52.381 0.00 0.00 45.64 2.73
96 97 1.125633 ACTTGTCGGGTGTACTTGGT 58.874 50.000 0.00 0.00 0.00 3.67
99 100 3.325716 ACTTGTCGGGTGTACTTGGTTAT 59.674 43.478 0.00 0.00 0.00 1.89
104 105 2.419574 CGGGTGTACTTGGTTATGGAGG 60.420 54.545 0.00 0.00 0.00 4.30
106 107 2.574824 GGTGTACTTGGTTATGGAGGGT 59.425 50.000 0.00 0.00 0.00 4.34
121 122 3.145233 GGTACCCGGGTGGATAGC 58.855 66.667 36.97 21.85 37.49 2.97
122 123 2.732658 GTACCCGGGTGGATAGCG 59.267 66.667 36.97 0.88 37.49 4.26
147 157 2.912025 GCAGGTGTGTTGGTGGGG 60.912 66.667 0.00 0.00 0.00 4.96
163 173 4.509737 GGGCTGCGGACGTCCTAC 62.510 72.222 30.92 22.75 0.00 3.18
170 180 1.138036 CGGACGTCCTACGATGCAA 59.862 57.895 30.92 0.00 46.05 4.08
172 182 0.527817 GGACGTCCTACGATGCAAGG 60.528 60.000 27.64 0.00 46.05 3.61
173 183 0.172803 GACGTCCTACGATGCAAGGT 59.827 55.000 3.51 0.33 46.05 3.50
183 194 3.505790 ATGCAAGGTGGTGGCCGAA 62.506 57.895 0.00 0.00 0.00 4.30
203 214 1.585006 AGGTACTTCAGCGGTGTCG 59.415 57.895 15.22 9.23 27.25 4.35
211 222 1.300620 CAGCGGTGTCGAACAAGGA 60.301 57.895 6.41 0.00 39.00 3.36
214 225 1.374252 CGGTGTCGAACAAGGAGGG 60.374 63.158 0.00 0.00 39.00 4.30
228 239 2.439156 AGGGAGCGGATGCAAAGC 60.439 61.111 0.00 0.00 46.23 3.51
237 248 0.533951 GGATGCAAAGCAAGGGGAAG 59.466 55.000 0.00 0.00 43.62 3.46
238 249 1.549203 GATGCAAAGCAAGGGGAAGA 58.451 50.000 0.00 0.00 43.62 2.87
246 258 1.464722 CAAGGGGAAGAAGGGGCAA 59.535 57.895 0.00 0.00 0.00 4.52
259 271 2.319844 AGGGGCAAAGTGGAAGAAAAG 58.680 47.619 0.00 0.00 0.00 2.27
289 301 5.652324 GATAGGGGGATTTGACTAGGTCTA 58.348 45.833 0.00 0.00 33.15 2.59
290 302 3.930035 AGGGGGATTTGACTAGGTCTAG 58.070 50.000 3.65 3.65 39.04 2.43
296 308 4.141914 GGATTTGACTAGGTCTAGGGTGTG 60.142 50.000 9.51 0.00 37.49 3.82
306 318 1.287146 TCTAGGGTGTGGGAGTCCTAC 59.713 57.143 18.38 18.38 0.00 3.18
321 333 0.670546 CCTACGTGGTGGCAGTCTTG 60.671 60.000 0.00 0.00 0.00 3.02
323 335 0.032952 TACGTGGTGGCAGTCTTGAC 59.967 55.000 0.00 0.00 0.00 3.18
338 350 0.827507 TTGACTTCTGCAAAGCCCCC 60.828 55.000 8.09 0.00 0.00 5.40
353 365 0.740737 CCCCCTGCTTCTTATTTGCG 59.259 55.000 0.00 0.00 0.00 4.85
354 366 0.740737 CCCCTGCTTCTTATTTGCGG 59.259 55.000 0.00 0.00 0.00 5.69
359 377 4.555262 CCTGCTTCTTATTTGCGGAAAAA 58.445 39.130 6.08 1.86 35.28 1.94
363 381 5.167845 GCTTCTTATTTGCGGAAAAATGGA 58.832 37.500 6.08 0.22 32.16 3.41
365 383 5.713792 TCTTATTTGCGGAAAAATGGACA 57.286 34.783 6.08 0.00 32.16 4.02
377 395 2.555732 AATGGACATCTGGCCCATTT 57.444 45.000 0.00 0.00 45.47 2.32
380 398 0.685458 GGACATCTGGCCCATTTGCT 60.685 55.000 0.00 0.00 37.19 3.91
381 399 1.188863 GACATCTGGCCCATTTGCTT 58.811 50.000 0.00 0.00 0.00 3.91
383 401 2.961062 GACATCTGGCCCATTTGCTTAT 59.039 45.455 0.00 0.00 0.00 1.73
387 405 2.158623 TCTGGCCCATTTGCTTATCGAT 60.159 45.455 2.16 2.16 0.00 3.59
395 413 5.003160 CCATTTGCTTATCGATGGGTATCA 58.997 41.667 8.54 0.00 36.29 2.15
405 423 6.813293 ATCGATGGGTATCATATTGGATGA 57.187 37.500 0.00 0.00 35.97 2.92
422 440 3.694072 GGATGACAAAATGAATCCGGACA 59.306 43.478 6.12 0.27 29.52 4.02
437 455 1.214062 GACAGCTCAGTCCGGACAG 59.786 63.158 35.00 27.83 32.36 3.51
440 458 1.341089 ACAGCTCAGTCCGGACAGATA 60.341 52.381 35.00 16.33 0.00 1.98
442 460 1.103803 GCTCAGTCCGGACAGATACA 58.896 55.000 35.00 11.40 0.00 2.29
451 469 2.424601 CCGGACAGATACAGACGGTTTA 59.575 50.000 0.00 0.00 36.78 2.01
459 477 7.536855 ACAGATACAGACGGTTTAAGACTTAG 58.463 38.462 0.00 0.00 0.00 2.18
462 480 8.460428 AGATACAGACGGTTTAAGACTTAGAAG 58.540 37.037 0.00 0.00 0.00 2.85
465 485 6.264970 ACAGACGGTTTAAGACTTAGAAGAGT 59.735 38.462 0.00 0.00 0.00 3.24
483 503 4.829064 GAGTATCTCTAGCAGACACCAG 57.171 50.000 0.00 0.00 27.15 4.00
485 505 4.204012 AGTATCTCTAGCAGACACCAGAC 58.796 47.826 0.00 0.00 27.15 3.51
486 506 2.586648 TCTCTAGCAGACACCAGACA 57.413 50.000 0.00 0.00 0.00 3.41
487 507 2.163509 TCTCTAGCAGACACCAGACAC 58.836 52.381 0.00 0.00 0.00 3.67
488 508 1.203523 CTCTAGCAGACACCAGACACC 59.796 57.143 0.00 0.00 0.00 4.16
489 509 0.969149 CTAGCAGACACCAGACACCA 59.031 55.000 0.00 0.00 0.00 4.17
575 595 1.921869 TTTCGGGGAATGGGAGGCTC 61.922 60.000 5.78 5.78 0.00 4.70
576 596 3.089874 CGGGGAATGGGAGGCTCA 61.090 66.667 17.69 0.00 0.00 4.26
577 597 2.922234 GGGGAATGGGAGGCTCAG 59.078 66.667 17.69 0.00 0.00 3.35
579 599 1.704007 GGGGAATGGGAGGCTCAGAG 61.704 65.000 17.69 0.00 0.00 3.35
580 600 1.704007 GGGAATGGGAGGCTCAGAGG 61.704 65.000 17.69 0.00 0.00 3.69
623 669 3.461831 TGAATAACTCCGGGGAATGGAAT 59.538 43.478 9.33 0.00 34.44 3.01
659 705 2.594303 TTGTGGCCACAAGCGAGG 60.594 61.111 40.89 0.00 45.42 4.63
685 733 0.107214 CCAAAGCGGCCCATCTAGAA 60.107 55.000 0.00 0.00 0.00 2.10
689 737 2.812619 GCGGCCCATCTAGAAGCCT 61.813 63.158 22.37 0.00 43.48 4.58
701 749 5.045012 TCTAGAAGCCTAGTCCGTGATAA 57.955 43.478 0.00 0.00 42.33 1.75
702 750 5.443283 TCTAGAAGCCTAGTCCGTGATAAA 58.557 41.667 0.00 0.00 42.33 1.40
863 933 1.672145 GGTTCTTGTGGTACGAGCCTC 60.672 57.143 0.00 0.00 29.55 4.70
878 948 2.106166 GAGCCTCTGGTCATCCATTGAT 59.894 50.000 0.00 0.00 43.43 2.57
879 949 2.512896 AGCCTCTGGTCATCCATTGATT 59.487 45.455 0.00 0.00 43.43 2.57
884 954 5.393787 CCTCTGGTCATCCATTGATTGTTTG 60.394 44.000 0.00 0.00 43.43 2.93
887 957 6.095860 TCTGGTCATCCATTGATTGTTTGATC 59.904 38.462 0.00 0.00 43.43 2.92
894 964 7.018487 TCCATTGATTGTTTGATCCCAAATT 57.982 32.000 0.00 0.00 43.37 1.82
941 1011 5.572680 CGATACTCACCATCTAGATCCTCCT 60.573 48.000 1.03 0.00 0.00 3.69
944 1014 3.826157 CTCACCATCTAGATCCTCCTGTC 59.174 52.174 1.03 0.00 0.00 3.51
997 1067 1.268743 GCAATCTCGCAGGTTATTGGC 60.269 52.381 0.00 0.00 31.46 4.52
1178 1248 3.179443 TGTCCATAGTCTCCATTTCGC 57.821 47.619 0.00 0.00 0.00 4.70
1218 1288 0.392706 TGCCCGCGTATCATGATCTT 59.607 50.000 12.53 0.00 0.00 2.40
1260 1576 2.265904 TACAGACGAGCAGCCGTGT 61.266 57.895 12.85 6.91 43.49 4.49
1271 1629 1.967762 CAGCCGTGTAATTGCTTGTG 58.032 50.000 0.00 0.00 31.77 3.33
1272 1630 1.266718 CAGCCGTGTAATTGCTTGTGT 59.733 47.619 0.00 0.00 31.77 3.72
1274 1632 2.360801 AGCCGTGTAATTGCTTGTGTTT 59.639 40.909 0.00 0.00 29.17 2.83
1361 1722 7.333528 AGTTAAATTCAGAACACACACACAT 57.666 32.000 0.00 0.00 0.00 3.21
1487 1856 2.486982 TCAGGAGAGTTCGTAACTTCCG 59.513 50.000 14.90 12.33 43.03 4.30
1488 1857 2.228343 CAGGAGAGTTCGTAACTTCCGT 59.772 50.000 14.90 6.56 43.03 4.69
1523 1892 0.461870 AGCGCAGTGAGTGTGTTCAA 60.462 50.000 11.47 0.00 39.06 2.69
1634 2007 2.791655 GGGGAATTCCAACGAACTTCT 58.208 47.619 25.67 0.00 37.91 2.85
1662 2035 2.749076 TGCTCCACAATGCTGTAATGAC 59.251 45.455 0.00 0.00 33.22 3.06
1771 2145 0.109086 AACTGACTGACATCGAGCGG 60.109 55.000 0.00 0.00 0.00 5.52
1774 2148 3.069980 GACTGACATCGAGCGGGCT 62.070 63.158 0.00 0.00 0.00 5.19
1775 2149 2.279120 CTGACATCGAGCGGGCTC 60.279 66.667 10.60 10.60 39.55 4.70
1777 2151 2.290122 CTGACATCGAGCGGGCTCTT 62.290 60.000 17.69 3.47 40.69 2.85
1795 2169 6.071896 GGGCTCTTAAAAGCAGTTTCATAAGT 60.072 38.462 2.68 0.00 44.35 2.24
1796 2170 7.024171 GGCTCTTAAAAGCAGTTTCATAAGTC 58.976 38.462 2.68 0.00 44.35 3.01
1797 2171 7.308589 GGCTCTTAAAAGCAGTTTCATAAGTCA 60.309 37.037 2.68 0.00 44.35 3.41
1798 2172 7.748241 GCTCTTAAAAGCAGTTTCATAAGTCAG 59.252 37.037 0.00 0.00 42.05 3.51
1841 2244 6.140303 ACACCATTCTCATCACATTTATGC 57.860 37.500 0.00 0.00 0.00 3.14
1918 2321 4.899457 TCATTGTAGGGAATATCGACCACT 59.101 41.667 0.00 0.00 0.00 4.00
2011 2414 3.954258 CAGAAGAGACCAACAAAAAGGGT 59.046 43.478 0.00 0.00 37.70 4.34
2026 2429 0.249398 AGGGTGCAGTAGTTAAGCGG 59.751 55.000 0.00 0.00 0.00 5.52
2041 2444 1.968540 GCGGCTGAAAGTCCAAGCT 60.969 57.895 0.00 0.00 32.39 3.74
2083 2486 5.541133 AGGTAAGCCGTAAGCAAGAGCTC 62.541 52.174 5.27 5.27 45.56 4.09
2099 2502 6.814146 GCAAGAGCTCAGTAGTAGTTGTATTT 59.186 38.462 17.77 0.00 37.91 1.40
2113 2516 3.634397 TGTATTTCTCCAAGGCTCCAG 57.366 47.619 0.00 0.00 0.00 3.86
2219 2623 6.702972 TCACTGTGTTGTTTTGTCAAAATG 57.297 33.333 13.65 5.97 32.22 2.32
2254 2658 1.156736 AGCGTTCACATGCTTGGTAC 58.843 50.000 4.44 0.00 43.26 3.34
2284 2688 7.620600 GCAAACAACAAATCAGTATGCAGAATG 60.621 37.037 1.62 1.62 40.87 2.67
2305 2709 1.743394 TCATGCATTCAGCTGCTTGAG 59.257 47.619 9.47 3.38 45.73 3.02
2307 2711 0.037160 TGCATTCAGCTGCTTGAGGA 59.963 50.000 9.47 0.00 45.94 3.71
2327 2731 6.261603 TGAGGATCATCATCTGCAATTGTTAC 59.738 38.462 5.84 0.00 42.56 2.50
2358 2762 3.689161 TCCTGAGATTTGCAATGGTTACG 59.311 43.478 0.00 0.00 0.00 3.18
2361 2765 3.818210 TGAGATTTGCAATGGTTACGTGT 59.182 39.130 0.00 0.00 0.00 4.49
2366 2770 3.341857 TGCAATGGTTACGTGTCAAAC 57.658 42.857 0.00 0.00 0.00 2.93
2368 2772 3.316588 TGCAATGGTTACGTGTCAAACAT 59.683 39.130 0.00 0.00 34.80 2.71
2385 2789 6.704493 GTCAAACATACTGTTAGTGACAAGGA 59.296 38.462 15.08 0.00 42.86 3.36
2413 2817 7.669722 AGTGGAAACCTTTCAATGTATACATGT 59.330 33.333 18.94 8.57 38.92 3.21
2473 2877 9.979578 ATCAATTTGAAAATGTGTTTGTAGCTA 57.020 25.926 2.68 0.00 0.00 3.32
2474 2878 9.243637 TCAATTTGAAAATGTGTTTGTAGCTAC 57.756 29.630 17.30 17.30 0.00 3.58
2475 2879 9.248291 CAATTTGAAAATGTGTTTGTAGCTACT 57.752 29.630 23.84 0.00 0.00 2.57
2476 2880 9.463443 AATTTGAAAATGTGTTTGTAGCTACTC 57.537 29.630 23.84 14.43 0.00 2.59
2477 2881 6.554334 TGAAAATGTGTTTGTAGCTACTCC 57.446 37.500 23.84 12.16 0.00 3.85
2478 2882 5.472137 TGAAAATGTGTTTGTAGCTACTCCC 59.528 40.000 23.84 11.84 0.00 4.30
2479 2883 4.910458 AATGTGTTTGTAGCTACTCCCT 57.090 40.909 23.84 0.93 0.00 4.20
2480 2884 3.955650 TGTGTTTGTAGCTACTCCCTC 57.044 47.619 23.84 12.25 0.00 4.30
2481 2885 2.565834 TGTGTTTGTAGCTACTCCCTCC 59.434 50.000 23.84 8.80 0.00 4.30
2482 2886 1.822990 TGTTTGTAGCTACTCCCTCCG 59.177 52.381 23.84 0.00 0.00 4.63
2483 2887 1.823610 GTTTGTAGCTACTCCCTCCGT 59.176 52.381 23.84 0.00 0.00 4.69
2484 2888 1.760192 TTGTAGCTACTCCCTCCGTC 58.240 55.000 23.84 0.00 0.00 4.79
2485 2889 0.106819 TGTAGCTACTCCCTCCGTCC 60.107 60.000 23.84 0.00 0.00 4.79
2486 2890 1.147824 TAGCTACTCCCTCCGTCCG 59.852 63.158 0.00 0.00 0.00 4.79
2487 2891 2.335092 TAGCTACTCCCTCCGTCCGG 62.335 65.000 0.00 0.00 0.00 5.14
2488 2892 2.593978 CTACTCCCTCCGTCCGGA 59.406 66.667 0.00 0.00 42.90 5.14
2489 2893 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
2490 2894 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
2491 2895 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2492 2896 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2493 2897 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2494 2898 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2495 2899 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2496 2900 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2497 2901 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2498 2902 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2499 2903 1.135315 TCCGTCCGGAAATACTTGTCG 60.135 52.381 5.23 1.25 42.05 4.35
2500 2904 1.403249 CCGTCCGGAAATACTTGTCGT 60.403 52.381 5.23 0.00 37.50 4.34
2501 2905 2.159393 CCGTCCGGAAATACTTGTCGTA 60.159 50.000 5.23 0.00 37.50 3.43
2502 2906 3.103738 CGTCCGGAAATACTTGTCGTAG 58.896 50.000 5.23 0.00 0.00 3.51
2503 2907 3.181507 CGTCCGGAAATACTTGTCGTAGA 60.182 47.826 5.23 0.00 0.00 2.59
2504 2908 4.672542 CGTCCGGAAATACTTGTCGTAGAA 60.673 45.833 5.23 0.00 39.69 2.10
2505 2909 5.163513 GTCCGGAAATACTTGTCGTAGAAA 58.836 41.667 5.23 0.00 39.69 2.52
2506 2910 5.809051 GTCCGGAAATACTTGTCGTAGAAAT 59.191 40.000 5.23 0.00 39.69 2.17
2507 2911 6.312180 GTCCGGAAATACTTGTCGTAGAAATT 59.688 38.462 5.23 0.00 39.69 1.82
2508 2912 6.311935 TCCGGAAATACTTGTCGTAGAAATTG 59.688 38.462 0.00 0.00 39.69 2.32
2509 2913 6.311935 CCGGAAATACTTGTCGTAGAAATTGA 59.688 38.462 0.00 0.00 39.69 2.57
2510 2914 7.011109 CCGGAAATACTTGTCGTAGAAATTGAT 59.989 37.037 0.00 0.00 39.69 2.57
2511 2915 9.027129 CGGAAATACTTGTCGTAGAAATTGATA 57.973 33.333 0.00 0.00 39.69 2.15
2518 2922 9.825972 ACTTGTCGTAGAAATTGATACAAATTG 57.174 29.630 0.00 0.00 39.69 2.32
2521 2925 9.986833 TGTCGTAGAAATTGATACAAATTGATG 57.013 29.630 0.00 0.00 39.69 3.07
2522 2926 9.988350 GTCGTAGAAATTGATACAAATTGATGT 57.012 29.630 0.00 0.00 39.69 3.06
2554 2958 9.817809 GAACTAAAATACATCTAGACACATCCA 57.182 33.333 0.00 0.00 0.00 3.41
2559 2963 8.682936 AAATACATCTAGACACATCCATTTCC 57.317 34.615 0.00 0.00 0.00 3.13
2560 2964 5.041191 ACATCTAGACACATCCATTTCCC 57.959 43.478 0.00 0.00 0.00 3.97
2561 2965 3.819564 TCTAGACACATCCATTTCCCG 57.180 47.619 0.00 0.00 0.00 5.14
2562 2966 2.434336 TCTAGACACATCCATTTCCCGG 59.566 50.000 0.00 0.00 0.00 5.73
2563 2967 1.285280 AGACACATCCATTTCCCGGA 58.715 50.000 0.73 0.00 36.84 5.14
2564 2968 1.065418 AGACACATCCATTTCCCGGAC 60.065 52.381 0.73 0.00 34.69 4.79
2565 2969 0.695924 ACACATCCATTTCCCGGACA 59.304 50.000 0.73 0.00 34.69 4.02
2566 2970 1.074727 ACACATCCATTTCCCGGACAA 59.925 47.619 0.73 0.00 34.69 3.18
2567 2971 1.745087 CACATCCATTTCCCGGACAAG 59.255 52.381 0.73 0.00 34.69 3.16
2568 2972 1.354368 ACATCCATTTCCCGGACAAGT 59.646 47.619 0.73 0.00 34.69 3.16
2569 2973 2.574369 ACATCCATTTCCCGGACAAGTA 59.426 45.455 0.73 0.00 34.69 2.24
2570 2974 3.202151 ACATCCATTTCCCGGACAAGTAT 59.798 43.478 0.73 0.00 34.69 2.12
2571 2975 4.207165 CATCCATTTCCCGGACAAGTATT 58.793 43.478 0.73 0.00 34.69 1.89
2572 2976 4.310022 TCCATTTCCCGGACAAGTATTT 57.690 40.909 0.73 0.00 0.00 1.40
2573 2977 4.266714 TCCATTTCCCGGACAAGTATTTC 58.733 43.478 0.73 0.00 0.00 2.17
2574 2978 3.380320 CCATTTCCCGGACAAGTATTTCC 59.620 47.826 0.73 0.00 0.00 3.13
2580 2984 1.648504 GGACAAGTATTTCCGGACGG 58.351 55.000 1.83 3.96 0.00 4.79
2581 2985 1.205417 GGACAAGTATTTCCGGACGGA 59.795 52.381 1.83 9.76 43.52 4.69
2582 2986 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2583 2987 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2584 2988 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2585 2989 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2586 2990 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2587 2991 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2588 2992 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
2647 3051 4.350368 TTTGCTTATCTCACACCACTGA 57.650 40.909 0.00 0.00 0.00 3.41
2649 3058 3.930336 TGCTTATCTCACACCACTGAAG 58.070 45.455 0.00 0.00 0.00 3.02
2658 3072 2.413112 CACACCACTGAAGTAATGAGCG 59.587 50.000 1.30 0.00 0.00 5.03
2670 3086 5.682943 AGTAATGAGCGTGTAGAGAGATC 57.317 43.478 0.00 0.00 0.00 2.75
2692 3108 0.741221 GGCAGCCTAACAGACTTCCG 60.741 60.000 3.29 0.00 0.00 4.30
2699 3115 2.299297 CCTAACAGACTTCCGGAACTGT 59.701 50.000 26.60 26.60 43.92 3.55
2926 3355 6.094603 TCGGTCAATCTTACCTACTCAAGTAC 59.905 42.308 0.00 0.00 34.66 2.73
2927 3356 6.095160 CGGTCAATCTTACCTACTCAAGTACT 59.905 42.308 0.00 0.00 34.66 2.73
2928 3357 7.482474 GGTCAATCTTACCTACTCAAGTACTC 58.518 42.308 0.00 0.00 33.97 2.59
2929 3358 7.416551 GGTCAATCTTACCTACTCAAGTACTCC 60.417 44.444 0.00 0.00 33.97 3.85
2930 3359 6.606395 TCAATCTTACCTACTCAAGTACTCCC 59.394 42.308 0.00 0.00 0.00 4.30
2931 3360 5.793034 TCTTACCTACTCAAGTACTCCCT 57.207 43.478 0.00 0.00 0.00 4.20
2932 3361 5.753716 TCTTACCTACTCAAGTACTCCCTC 58.246 45.833 0.00 0.00 0.00 4.30
2933 3362 5.491800 TCTTACCTACTCAAGTACTCCCTCT 59.508 44.000 0.00 0.00 0.00 3.69
2934 3363 3.970842 ACCTACTCAAGTACTCCCTCTG 58.029 50.000 0.00 0.00 0.00 3.35
2935 3364 3.334280 ACCTACTCAAGTACTCCCTCTGT 59.666 47.826 0.00 0.00 0.00 3.41
2936 3365 4.202695 ACCTACTCAAGTACTCCCTCTGTT 60.203 45.833 0.00 0.00 0.00 3.16
2937 3366 4.773149 CCTACTCAAGTACTCCCTCTGTTT 59.227 45.833 0.00 0.00 0.00 2.83
2938 3367 4.875561 ACTCAAGTACTCCCTCTGTTTC 57.124 45.455 0.00 0.00 0.00 2.78
2939 3368 4.223953 ACTCAAGTACTCCCTCTGTTTCA 58.776 43.478 0.00 0.00 0.00 2.69
2940 3369 4.654262 ACTCAAGTACTCCCTCTGTTTCAA 59.346 41.667 0.00 0.00 0.00 2.69
2941 3370 5.130477 ACTCAAGTACTCCCTCTGTTTCAAA 59.870 40.000 0.00 0.00 0.00 2.69
2942 3371 6.183361 ACTCAAGTACTCCCTCTGTTTCAAAT 60.183 38.462 0.00 0.00 0.00 2.32
2943 3372 6.601332 TCAAGTACTCCCTCTGTTTCAAATT 58.399 36.000 0.00 0.00 0.00 1.82
2944 3373 7.741785 TCAAGTACTCCCTCTGTTTCAAATTA 58.258 34.615 0.00 0.00 0.00 1.40
2945 3374 7.660208 TCAAGTACTCCCTCTGTTTCAAATTAC 59.340 37.037 0.00 0.00 0.00 1.89
2946 3375 7.317722 AGTACTCCCTCTGTTTCAAATTACT 57.682 36.000 0.00 0.00 0.00 2.24
2947 3376 7.387643 AGTACTCCCTCTGTTTCAAATTACTC 58.612 38.462 0.00 0.00 0.00 2.59
2948 3377 5.238583 ACTCCCTCTGTTTCAAATTACTCG 58.761 41.667 0.00 0.00 0.00 4.18
2949 3378 5.221661 ACTCCCTCTGTTTCAAATTACTCGT 60.222 40.000 0.00 0.00 0.00 4.18
2950 3379 5.235516 TCCCTCTGTTTCAAATTACTCGTC 58.764 41.667 0.00 0.00 0.00 4.20
2951 3380 4.091509 CCCTCTGTTTCAAATTACTCGTCG 59.908 45.833 0.00 0.00 0.00 5.12
2952 3381 4.684703 CCTCTGTTTCAAATTACTCGTCGT 59.315 41.667 0.00 0.00 0.00 4.34
2953 3382 5.860182 CCTCTGTTTCAAATTACTCGTCGTA 59.140 40.000 0.00 0.00 0.00 3.43
2954 3383 6.033619 CCTCTGTTTCAAATTACTCGTCGTAG 59.966 42.308 0.00 0.00 0.00 3.51
2955 3384 6.671190 TCTGTTTCAAATTACTCGTCGTAGA 58.329 36.000 0.00 0.00 0.00 2.59
2956 3385 7.140705 TCTGTTTCAAATTACTCGTCGTAGAA 58.859 34.615 0.00 0.00 39.69 2.10
2957 3386 7.648908 TCTGTTTCAAATTACTCGTCGTAGAAA 59.351 33.333 0.00 0.00 39.69 2.52
2958 3387 8.301730 TGTTTCAAATTACTCGTCGTAGAAAT 57.698 30.769 0.00 0.00 39.69 2.17
2959 3388 8.218441 TGTTTCAAATTACTCGTCGTAGAAATG 58.782 33.333 0.00 0.00 39.69 2.32
2960 3389 6.880822 TCAAATTACTCGTCGTAGAAATGG 57.119 37.500 0.00 0.00 39.69 3.16
2961 3390 6.623486 TCAAATTACTCGTCGTAGAAATGGA 58.377 36.000 0.00 0.00 39.69 3.41
2962 3391 7.262772 TCAAATTACTCGTCGTAGAAATGGAT 58.737 34.615 0.00 0.00 39.69 3.41
2963 3392 7.222031 TCAAATTACTCGTCGTAGAAATGGATG 59.778 37.037 0.00 0.00 39.69 3.51
2964 3393 5.571784 TTACTCGTCGTAGAAATGGATGT 57.428 39.130 0.00 0.00 39.69 3.06
2965 3394 6.682423 TTACTCGTCGTAGAAATGGATGTA 57.318 37.500 0.00 0.00 39.69 2.29
2966 3395 5.769484 ACTCGTCGTAGAAATGGATGTAT 57.231 39.130 0.00 0.00 39.69 2.29
2967 3396 5.759963 ACTCGTCGTAGAAATGGATGTATC 58.240 41.667 0.00 0.00 39.69 2.24
2968 3397 5.531659 ACTCGTCGTAGAAATGGATGTATCT 59.468 40.000 0.00 0.00 39.69 1.98
2969 3398 6.709397 ACTCGTCGTAGAAATGGATGTATCTA 59.291 38.462 0.00 0.00 39.69 1.98
2970 3399 6.895898 TCGTCGTAGAAATGGATGTATCTAC 58.104 40.000 0.00 0.00 39.69 2.59
2971 3400 6.484308 TCGTCGTAGAAATGGATGTATCTACA 59.516 38.462 11.13 0.00 42.70 2.74
2972 3401 7.012610 TCGTCGTAGAAATGGATGTATCTACAA 59.987 37.037 11.13 0.00 42.70 2.41
2973 3402 7.113124 CGTCGTAGAAATGGATGTATCTACAAC 59.887 40.741 11.13 3.50 42.70 3.32
2974 3403 8.136165 GTCGTAGAAATGGATGTATCTACAACT 58.864 37.037 11.13 0.00 42.70 3.16
2975 3404 9.346005 TCGTAGAAATGGATGTATCTACAACTA 57.654 33.333 11.13 0.00 42.70 2.24
2976 3405 9.961265 CGTAGAAATGGATGTATCTACAACTAA 57.039 33.333 11.13 0.00 42.70 2.24
3005 3434 8.255111 ACATCTAGATACATCCATTTCTGTGA 57.745 34.615 4.54 0.00 0.00 3.58
3006 3435 8.147058 ACATCTAGATACATCCATTTCTGTGAC 58.853 37.037 4.54 0.00 0.00 3.67
3007 3436 6.739112 TCTAGATACATCCATTTCTGTGACG 58.261 40.000 0.00 0.00 0.00 4.35
3008 3437 5.598416 AGATACATCCATTTCTGTGACGA 57.402 39.130 0.00 0.00 0.00 4.20
3009 3438 5.595885 AGATACATCCATTTCTGTGACGAG 58.404 41.667 0.00 0.00 0.00 4.18
3010 3439 3.685139 ACATCCATTTCTGTGACGAGT 57.315 42.857 0.00 0.00 0.00 4.18
3011 3440 4.801330 ACATCCATTTCTGTGACGAGTA 57.199 40.909 0.00 0.00 0.00 2.59
3012 3441 5.147330 ACATCCATTTCTGTGACGAGTAA 57.853 39.130 0.00 0.00 0.00 2.24
3013 3442 5.734720 ACATCCATTTCTGTGACGAGTAAT 58.265 37.500 0.00 0.00 0.00 1.89
3014 3443 6.173339 ACATCCATTTCTGTGACGAGTAATT 58.827 36.000 0.00 0.00 0.00 1.40
3015 3444 6.313905 ACATCCATTTCTGTGACGAGTAATTC 59.686 38.462 0.00 0.00 0.00 2.17
3026 3455 2.810650 CGAGTAATTCGGAACAGAGGG 58.189 52.381 0.00 0.00 45.54 4.30
3027 3456 2.426024 CGAGTAATTCGGAACAGAGGGA 59.574 50.000 0.00 0.00 45.54 4.20
3028 3457 3.489398 CGAGTAATTCGGAACAGAGGGAG 60.489 52.174 0.00 0.00 45.54 4.30
3029 3458 3.442076 AGTAATTCGGAACAGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
3030 3459 4.607239 AGTAATTCGGAACAGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
3056 3485 1.689233 AGCTTCCGGTGATAGGCCA 60.689 57.895 5.01 0.00 0.00 5.36
3103 3533 6.042638 TGAGAACTTCTTCCTACCAATCTG 57.957 41.667 0.00 0.00 0.00 2.90
3105 3535 6.043854 AGAACTTCTTCCTACCAATCTGTC 57.956 41.667 0.00 0.00 0.00 3.51
3120 3550 5.303971 CAATCTGTCTAGGTGATCCATTCC 58.696 45.833 0.00 0.00 35.89 3.01
3153 3583 1.238439 CAGCTCACAACCACGGATTT 58.762 50.000 0.00 0.00 0.00 2.17
3178 3608 6.321181 TGGATTCTGATAAACTTATTGTGGGC 59.679 38.462 0.00 0.00 0.00 5.36
3214 3652 4.144297 AGCACACACATTTACACCTGAAT 58.856 39.130 0.00 0.00 0.00 2.57
3231 3669 7.599998 ACACCTGAATTCTGCAATAAATTCAAC 59.400 33.333 22.02 6.26 45.96 3.18
3253 3691 3.388308 CTCATAGCGTTCATCTCCCTTG 58.612 50.000 0.00 0.00 0.00 3.61
3403 3847 3.934391 AACGGCCGAGGAAGAAGCG 62.934 63.158 35.90 0.00 0.00 4.68
3490 3934 1.194781 ACCGGCTCATTGAGGTCAGT 61.195 55.000 15.28 0.00 29.76 3.41
3526 3973 0.178861 AAAGGAAGGAGGAGGAGGCA 60.179 55.000 0.00 0.00 0.00 4.75
3544 3991 0.532573 CAGACGCCACAGTGTAGGAT 59.467 55.000 13.85 3.29 36.67 3.24
3598 4048 3.036084 CGTGCACCGCGAGAGTTT 61.036 61.111 8.23 0.00 39.94 2.66
3713 4163 5.800438 GTCTGACCAGTTTTTGTTCTTTGTC 59.200 40.000 0.00 0.00 0.00 3.18
3916 4378 4.021280 TGTTTGATATTGGCACTTGCATGT 60.021 37.500 3.15 0.00 44.36 3.21
3917 4379 3.786516 TGATATTGGCACTTGCATGTG 57.213 42.857 24.37 24.37 44.36 3.21
3953 4415 5.705441 TGGTTTATTAGAGCAGACCAAACTG 59.295 40.000 0.00 0.00 40.43 3.16
3985 4447 8.357290 TCAGATTCTGATCAATTTGGTTCATT 57.643 30.769 12.38 0.00 35.39 2.57
3996 4458 7.733969 TCAATTTGGTTCATTCATTTTCTCCA 58.266 30.769 0.00 0.00 0.00 3.86
4055 4518 3.673902 CACATACACATCACCCTTGACA 58.326 45.455 0.00 0.00 33.38 3.58
4139 4607 5.099575 CACGTACTGTGCTGTACATAATGA 58.900 41.667 15.93 0.00 42.70 2.57
4149 4617 3.527533 TGTACATAATGACCAGCGGAAC 58.472 45.455 0.00 0.00 0.00 3.62
4185 4660 2.577059 GATCGCACACGGGGAAGA 59.423 61.111 0.00 0.00 42.27 2.87
4259 4734 2.047179 GGGGCTCTGAACACCGTC 60.047 66.667 0.00 0.00 0.00 4.79
4442 4917 3.382832 CCGAACGGGAGCCTCAGT 61.383 66.667 5.25 0.00 38.47 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
63 64 2.286833 CGACAAGTGTTCGGTCAAATGT 59.713 45.455 0.00 0.00 0.00 2.71
69 70 1.068585 ACCCGACAAGTGTTCGGTC 59.931 57.895 9.75 0.00 44.71 4.79
106 107 2.522436 CCGCTATCCACCCGGGTA 60.522 66.667 29.72 13.39 38.42 3.69
118 119 4.075793 ACCTGCCCTCCTCCGCTA 62.076 66.667 0.00 0.00 0.00 4.26
121 122 4.087892 CACACCTGCCCTCCTCCG 62.088 72.222 0.00 0.00 0.00 4.63
122 123 2.529744 AACACACCTGCCCTCCTCC 61.530 63.158 0.00 0.00 0.00 4.30
147 157 4.849329 CGTAGGACGTCCGCAGCC 62.849 72.222 28.26 14.14 42.08 4.85
163 173 3.443045 GGCCACCACCTTGCATCG 61.443 66.667 0.00 0.00 0.00 3.84
170 180 1.420532 TACCTTTTCGGCCACCACCT 61.421 55.000 2.24 0.00 35.61 4.00
172 182 0.250597 AGTACCTTTTCGGCCACCAC 60.251 55.000 2.24 0.00 35.61 4.16
173 183 0.475044 AAGTACCTTTTCGGCCACCA 59.525 50.000 2.24 0.00 35.61 4.17
183 194 1.604693 CGACACCGCTGAAGTACCTTT 60.605 52.381 0.00 0.00 0.00 3.11
194 205 1.006102 CTCCTTGTTCGACACCGCT 60.006 57.895 0.00 0.00 35.37 5.52
196 207 1.374252 CCCTCCTTGTTCGACACCG 60.374 63.158 0.00 0.00 37.07 4.94
203 214 0.462759 CATCCGCTCCCTCCTTGTTC 60.463 60.000 0.00 0.00 0.00 3.18
211 222 2.439156 GCTTTGCATCCGCTCCCT 60.439 61.111 0.00 0.00 39.64 4.20
214 225 1.138247 CCTTGCTTTGCATCCGCTC 59.862 57.895 0.00 0.00 38.76 5.03
228 239 0.178935 TTTGCCCCTTCTTCCCCTTG 60.179 55.000 0.00 0.00 0.00 3.61
237 248 1.995376 TTCTTCCACTTTGCCCCTTC 58.005 50.000 0.00 0.00 0.00 3.46
238 249 2.470057 TTTCTTCCACTTTGCCCCTT 57.530 45.000 0.00 0.00 0.00 3.95
246 258 2.171870 TCGGTCCACTTTTCTTCCACTT 59.828 45.455 0.00 0.00 0.00 3.16
259 271 1.137697 AAATCCCCCTATCGGTCCAC 58.862 55.000 0.00 0.00 0.00 4.02
279 291 1.287146 TCCCACACCCTAGACCTAGTC 59.713 57.143 0.00 0.00 0.00 2.59
289 301 1.305046 CGTAGGACTCCCACACCCT 60.305 63.158 0.00 0.00 33.88 4.34
290 302 1.608627 ACGTAGGACTCCCACACCC 60.609 63.158 0.00 0.00 33.88 4.61
296 308 3.015312 GCCACCACGTAGGACTCCC 62.015 68.421 10.46 0.00 41.22 4.30
306 318 0.532862 AAGTCAAGACTGCCACCACG 60.533 55.000 3.08 0.00 41.58 4.94
321 333 1.075659 AGGGGGCTTTGCAGAAGTC 59.924 57.895 9.40 7.35 0.00 3.01
323 335 2.643232 GCAGGGGGCTTTGCAGAAG 61.643 63.158 4.78 4.78 40.02 2.85
338 350 5.062558 CCATTTTTCCGCAAATAAGAAGCAG 59.937 40.000 0.00 0.00 0.00 4.24
345 357 6.098679 CAGATGTCCATTTTTCCGCAAATAA 58.901 36.000 0.00 0.00 0.00 1.40
346 358 5.394005 CCAGATGTCCATTTTTCCGCAAATA 60.394 40.000 0.00 0.00 0.00 1.40
353 365 1.482182 GGGCCAGATGTCCATTTTTCC 59.518 52.381 4.39 0.00 0.00 3.13
354 366 2.178580 TGGGCCAGATGTCCATTTTTC 58.821 47.619 0.00 0.00 0.00 2.29
359 377 1.784358 CAAATGGGCCAGATGTCCAT 58.216 50.000 13.78 0.00 42.52 3.41
363 381 2.530460 TAAGCAAATGGGCCAGATGT 57.470 45.000 13.78 1.15 0.00 3.06
365 383 2.158623 TCGATAAGCAAATGGGCCAGAT 60.159 45.455 13.78 0.00 0.00 2.90
377 395 6.156083 TCCAATATGATACCCATCGATAAGCA 59.844 38.462 0.00 0.00 36.71 3.91
380 398 8.204160 GTCATCCAATATGATACCCATCGATAA 58.796 37.037 0.00 0.00 36.71 1.75
381 399 7.344352 TGTCATCCAATATGATACCCATCGATA 59.656 37.037 0.00 0.00 36.71 2.92
383 401 5.483583 TGTCATCCAATATGATACCCATCGA 59.516 40.000 0.00 0.00 36.71 3.59
387 405 8.003629 TCATTTTGTCATCCAATATGATACCCA 58.996 33.333 4.71 0.00 42.71 4.51
393 411 7.255555 CCGGATTCATTTTGTCATCCAATATGA 60.256 37.037 0.00 4.71 44.54 2.15
395 413 6.777091 TCCGGATTCATTTTGTCATCCAATAT 59.223 34.615 0.00 0.00 35.78 1.28
405 423 2.749621 GAGCTGTCCGGATTCATTTTGT 59.250 45.455 7.81 0.00 0.00 2.83
422 440 1.341089 TGTATCTGTCCGGACTGAGCT 60.341 52.381 36.91 27.65 41.45 4.09
437 455 8.457261 TCTTCTAAGTCTTAAACCGTCTGTATC 58.543 37.037 0.00 0.00 0.00 2.24
440 458 6.264970 ACTCTTCTAAGTCTTAAACCGTCTGT 59.735 38.462 0.00 0.00 0.00 3.41
442 460 6.897706 ACTCTTCTAAGTCTTAAACCGTCT 57.102 37.500 0.00 0.00 0.00 4.18
451 469 8.491134 TCTGCTAGAGATACTCTTCTAAGTCTT 58.509 37.037 6.60 0.00 41.50 3.01
459 477 4.884744 TGGTGTCTGCTAGAGATACTCTTC 59.115 45.833 6.60 1.29 41.44 2.87
462 480 4.274950 GTCTGGTGTCTGCTAGAGATACTC 59.725 50.000 14.19 0.00 41.44 2.59
465 485 3.948473 GTGTCTGGTGTCTGCTAGAGATA 59.052 47.826 0.00 0.00 31.63 1.98
483 503 8.941977 GGTTTTTGGGAATTAATTTATGGTGTC 58.058 33.333 1.43 0.00 0.00 3.67
485 505 8.726068 GTGGTTTTTGGGAATTAATTTATGGTG 58.274 33.333 1.43 0.00 0.00 4.17
486 506 8.664992 AGTGGTTTTTGGGAATTAATTTATGGT 58.335 29.630 1.43 0.00 0.00 3.55
487 507 9.513906 AAGTGGTTTTTGGGAATTAATTTATGG 57.486 29.630 1.43 0.00 0.00 2.74
554 574 0.823769 GCCTCCCATTCCCCGAAATC 60.824 60.000 0.00 0.00 0.00 2.17
575 595 1.547820 TCTGCTAGTTGACAGCCTCTG 59.452 52.381 0.00 0.00 38.29 3.35
576 596 1.930251 TCTGCTAGTTGACAGCCTCT 58.070 50.000 0.00 0.00 38.29 3.69
577 597 2.482839 GGATCTGCTAGTTGACAGCCTC 60.483 54.545 0.00 0.00 38.29 4.70
579 599 1.484240 AGGATCTGCTAGTTGACAGCC 59.516 52.381 0.00 0.00 38.29 4.85
580 600 2.820330 GAGGATCTGCTAGTTGACAGC 58.180 52.381 0.00 0.00 39.56 4.40
659 705 2.125552 GGCCGCTTTGGAATTGGC 60.126 61.111 0.00 0.00 44.98 4.52
685 733 2.463752 TGGTTTATCACGGACTAGGCT 58.536 47.619 0.00 0.00 0.00 4.58
689 737 3.490249 CGCTGATGGTTTATCACGGACTA 60.490 47.826 0.00 0.00 40.82 2.59
786 852 2.500504 GGGATGAAGTAGAACGGGAACT 59.499 50.000 0.00 0.00 0.00 3.01
878 948 5.994668 GCAAGGTTAATTTGGGATCAAACAA 59.005 36.000 0.00 0.00 44.53 2.83
879 949 5.070981 TGCAAGGTTAATTTGGGATCAAACA 59.929 36.000 0.00 0.00 44.53 2.83
884 954 8.829612 CATAATTTGCAAGGTTAATTTGGGATC 58.170 33.333 0.00 0.00 0.00 3.36
887 957 6.883756 ACCATAATTTGCAAGGTTAATTTGGG 59.116 34.615 18.82 13.86 31.34 4.12
894 964 5.123186 CGTCAGACCATAATTTGCAAGGTTA 59.877 40.000 8.56 8.42 31.57 2.85
941 1011 6.437477 ACATAAACCACACTAGAGATCAGACA 59.563 38.462 0.00 0.00 0.00 3.41
944 1014 6.867550 TCACATAAACCACACTAGAGATCAG 58.132 40.000 0.00 0.00 0.00 2.90
997 1067 2.516930 CCGCCAGCCTACCATTGG 60.517 66.667 0.00 0.00 35.06 3.16
1178 1248 4.747108 GCATACAGATACAGCCAACAGTAG 59.253 45.833 0.00 0.00 0.00 2.57
1218 1288 9.102757 GTACTTCAGATGAGCATTCAGAATTTA 57.897 33.333 0.00 0.00 36.61 1.40
1311 1670 8.856490 AAAATAAGGCGCAAATAATAACTGAG 57.144 30.769 10.83 0.00 0.00 3.35
1361 1722 0.320334 CATAGTGACACACGGGCACA 60.320 55.000 8.59 0.00 39.64 4.57
1523 1892 9.327628 CATTAGAAAGTCATCATCATCAAGAGT 57.672 33.333 0.00 0.00 0.00 3.24
1634 2007 1.211212 AGCATTGTGGAGCAGCTGATA 59.789 47.619 20.43 0.00 33.67 2.15
1662 2035 4.749245 ACTGAAACATAGCACGAAAAGG 57.251 40.909 0.00 0.00 0.00 3.11
1731 2105 4.822036 TGCAAACGCACACTTAGTTATT 57.178 36.364 0.00 0.00 33.43 1.40
1771 2145 6.914259 ACTTATGAAACTGCTTTTAAGAGCC 58.086 36.000 14.85 0.50 42.01 4.70
1774 2148 8.677148 ACTGACTTATGAAACTGCTTTTAAGA 57.323 30.769 0.00 0.00 0.00 2.10
1777 2151 8.450964 GCATACTGACTTATGAAACTGCTTTTA 58.549 33.333 0.00 0.00 31.96 1.52
1796 2170 7.350467 GTGTCAATATGATGTTCAGCATACTG 58.650 38.462 11.96 11.73 45.95 2.74
1797 2171 6.484643 GGTGTCAATATGATGTTCAGCATACT 59.515 38.462 11.96 0.09 38.06 2.12
1798 2172 6.260714 TGGTGTCAATATGATGTTCAGCATAC 59.739 38.462 11.96 4.36 38.06 2.39
1841 2244 4.320275 GCATGTCACTATGATGCATGAAGG 60.320 45.833 2.46 0.00 36.79 3.46
1918 2321 1.977854 TCTGCAGCAAGAAGGTTCCTA 59.022 47.619 9.47 0.00 0.00 2.94
2011 2414 0.606096 TCAGCCGCTTAACTACTGCA 59.394 50.000 0.00 0.00 0.00 4.41
2026 2429 4.256920 TCTTGATAGCTTGGACTTTCAGC 58.743 43.478 0.00 0.00 30.79 4.26
2041 2444 6.753913 ACCTGCTTGATATCCTTCTTGATA 57.246 37.500 0.00 0.00 0.00 2.15
2083 2486 6.535508 GCCTTGGAGAAATACAACTACTACTG 59.464 42.308 0.00 0.00 0.00 2.74
2099 2502 2.180973 AGGATATCTGGAGCCTTGGAGA 59.819 50.000 2.05 0.00 0.00 3.71
2219 2623 1.535462 ACGCTTTCACCAACTACATGC 59.465 47.619 0.00 0.00 0.00 4.06
2254 2658 2.715268 ACTGATTTGTTGTTTGCGACG 58.285 42.857 0.00 0.00 0.00 5.12
2284 2688 1.471287 TCAAGCAGCTGAATGCATGAC 59.529 47.619 20.43 0.00 45.85 3.06
2305 2709 6.381481 TGTAACAATTGCAGATGATGATCC 57.619 37.500 5.05 0.00 0.00 3.36
2307 2711 8.255206 ACAAATGTAACAATTGCAGATGATGAT 58.745 29.630 5.05 0.00 28.34 2.45
2327 2731 4.873817 TGCAAATCTCAGGAACACAAATG 58.126 39.130 0.00 0.00 0.00 2.32
2366 2770 6.147821 CCACTTTCCTTGTCACTAACAGTATG 59.852 42.308 0.00 0.00 39.58 2.39
2368 2772 5.364446 TCCACTTTCCTTGTCACTAACAGTA 59.636 40.000 0.00 0.00 39.58 2.74
2385 2789 8.472007 TGTATACATTGAAAGGTTTCCACTTT 57.528 30.769 0.08 0.00 40.61 2.66
2455 2859 5.705905 AGGGAGTAGCTACAAACACATTTTC 59.294 40.000 25.28 9.83 0.00 2.29
2473 2877 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
2474 2878 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2475 2879 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
2476 2880 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
2477 2881 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
2478 2882 2.537401 GACAAGTATTTCCGGACGGAG 58.463 52.381 13.64 3.15 46.06 4.63
2479 2883 1.135315 CGACAAGTATTTCCGGACGGA 60.135 52.381 1.83 9.76 43.52 4.69
2480 2884 1.274596 CGACAAGTATTTCCGGACGG 58.725 55.000 1.83 3.96 0.00 4.79
2481 2885 1.986698 ACGACAAGTATTTCCGGACG 58.013 50.000 1.83 3.25 0.00 4.79
2482 2886 4.361451 TCTACGACAAGTATTTCCGGAC 57.639 45.455 1.83 0.00 34.34 4.79
2483 2887 5.389859 TTTCTACGACAAGTATTTCCGGA 57.610 39.130 0.00 0.00 34.34 5.14
2484 2888 6.311935 TCAATTTCTACGACAAGTATTTCCGG 59.688 38.462 0.00 0.00 34.34 5.14
2485 2889 7.285783 TCAATTTCTACGACAAGTATTTCCG 57.714 36.000 0.00 0.00 34.34 4.30
2492 2896 9.825972 CAATTTGTATCAATTTCTACGACAAGT 57.174 29.630 0.00 0.00 0.00 3.16
2495 2899 9.986833 CATCAATTTGTATCAATTTCTACGACA 57.013 29.630 0.00 0.00 0.00 4.35
2496 2900 9.988350 ACATCAATTTGTATCAATTTCTACGAC 57.012 29.630 0.00 0.00 0.00 4.34
2528 2932 9.817809 TGGATGTGTCTAGATGTATTTTAGTTC 57.182 33.333 0.00 0.00 0.00 3.01
2533 2937 9.125026 GGAAATGGATGTGTCTAGATGTATTTT 57.875 33.333 0.00 0.00 0.00 1.82
2534 2938 7.721399 GGGAAATGGATGTGTCTAGATGTATTT 59.279 37.037 0.00 0.00 0.00 1.40
2535 2939 7.227156 GGGAAATGGATGTGTCTAGATGTATT 58.773 38.462 0.00 0.00 0.00 1.89
2536 2940 6.519043 CGGGAAATGGATGTGTCTAGATGTAT 60.519 42.308 0.00 0.00 0.00 2.29
2537 2941 5.221441 CGGGAAATGGATGTGTCTAGATGTA 60.221 44.000 0.00 0.00 0.00 2.29
2538 2942 4.443457 CGGGAAATGGATGTGTCTAGATGT 60.443 45.833 0.00 0.00 0.00 3.06
2539 2943 4.060900 CGGGAAATGGATGTGTCTAGATG 58.939 47.826 0.00 0.00 0.00 2.90
2540 2944 3.071602 CCGGGAAATGGATGTGTCTAGAT 59.928 47.826 0.00 0.00 0.00 1.98
2541 2945 2.434336 CCGGGAAATGGATGTGTCTAGA 59.566 50.000 0.00 0.00 0.00 2.43
2542 2946 2.434336 TCCGGGAAATGGATGTGTCTAG 59.566 50.000 0.00 0.00 0.00 2.43
2543 2947 2.169769 GTCCGGGAAATGGATGTGTCTA 59.830 50.000 0.00 0.00 37.93 2.59
2544 2948 1.065418 GTCCGGGAAATGGATGTGTCT 60.065 52.381 0.00 0.00 37.93 3.41
2545 2949 1.339631 TGTCCGGGAAATGGATGTGTC 60.340 52.381 0.00 0.00 37.93 3.67
2546 2950 0.695924 TGTCCGGGAAATGGATGTGT 59.304 50.000 0.00 0.00 37.93 3.72
2547 2951 1.745087 CTTGTCCGGGAAATGGATGTG 59.255 52.381 0.00 0.00 37.93 3.21
2548 2952 1.354368 ACTTGTCCGGGAAATGGATGT 59.646 47.619 0.00 0.00 37.93 3.06
2549 2953 2.128771 ACTTGTCCGGGAAATGGATG 57.871 50.000 0.00 0.00 37.93 3.51
2550 2954 4.519906 AATACTTGTCCGGGAAATGGAT 57.480 40.909 0.00 0.00 37.93 3.41
2551 2955 4.266714 GAAATACTTGTCCGGGAAATGGA 58.733 43.478 0.00 0.00 0.00 3.41
2552 2956 3.380320 GGAAATACTTGTCCGGGAAATGG 59.620 47.826 0.00 0.00 0.00 3.16
2553 2957 4.632538 GGAAATACTTGTCCGGGAAATG 57.367 45.455 0.00 0.00 0.00 2.32
2561 2965 1.205417 TCCGTCCGGAAATACTTGTCC 59.795 52.381 5.23 0.00 42.05 4.02
2562 2966 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
2563 2967 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
2564 2968 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2565 2969 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
2566 2970 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2567 2971 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2568 2972 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2569 2973 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2570 2974 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2571 2975 0.032813 AATACTCCCTCCGTCCGGAA 60.033 55.000 5.23 0.00 44.66 4.30
2572 2976 0.846015 TAATACTCCCTCCGTCCGGA 59.154 55.000 0.00 0.00 42.90 5.14
2573 2977 1.920610 ATAATACTCCCTCCGTCCGG 58.079 55.000 0.00 0.00 0.00 5.14
2574 2978 2.889045 TGAATAATACTCCCTCCGTCCG 59.111 50.000 0.00 0.00 0.00 4.79
2575 2979 5.238583 CAATGAATAATACTCCCTCCGTCC 58.761 45.833 0.00 0.00 0.00 4.79
2576 2980 5.221661 ACCAATGAATAATACTCCCTCCGTC 60.222 44.000 0.00 0.00 0.00 4.79
2577 2981 4.658901 ACCAATGAATAATACTCCCTCCGT 59.341 41.667 0.00 0.00 0.00 4.69
2578 2982 5.228945 ACCAATGAATAATACTCCCTCCG 57.771 43.478 0.00 0.00 0.00 4.63
2579 2983 7.746703 ACTAACCAATGAATAATACTCCCTCC 58.253 38.462 0.00 0.00 0.00 4.30
2580 2984 9.628500 AAACTAACCAATGAATAATACTCCCTC 57.372 33.333 0.00 0.00 0.00 4.30
2647 3051 5.590663 TGATCTCTCTACACGCTCATTACTT 59.409 40.000 0.00 0.00 0.00 2.24
2649 3058 5.425577 TGATCTCTCTACACGCTCATTAC 57.574 43.478 0.00 0.00 0.00 1.89
2658 3072 2.482839 GGCTGCCTTGATCTCTCTACAC 60.483 54.545 12.43 0.00 0.00 2.90
2670 3086 2.079925 GAAGTCTGTTAGGCTGCCTTG 58.920 52.381 28.55 14.48 34.61 3.61
2692 3108 8.494016 AAGATTATTAGCAGTACAACAGTTCC 57.506 34.615 0.00 0.00 0.00 3.62
2742 3161 8.912988 AGGAAGATTCAGACTAATTAGAGACTG 58.087 37.037 19.38 20.48 0.00 3.51
2743 3162 8.912988 CAGGAAGATTCAGACTAATTAGAGACT 58.087 37.037 19.38 11.50 0.00 3.24
2754 3176 2.264455 ACAGCCAGGAAGATTCAGACT 58.736 47.619 0.00 0.00 0.00 3.24
2926 3355 5.238583 ACGAGTAATTTGAAACAGAGGGAG 58.761 41.667 0.00 0.00 0.00 4.30
2927 3356 5.223449 ACGAGTAATTTGAAACAGAGGGA 57.777 39.130 0.00 0.00 0.00 4.20
2928 3357 4.091509 CGACGAGTAATTTGAAACAGAGGG 59.908 45.833 0.00 0.00 0.00 4.30
2929 3358 4.684703 ACGACGAGTAATTTGAAACAGAGG 59.315 41.667 0.00 0.00 0.00 3.69
2930 3359 5.824243 ACGACGAGTAATTTGAAACAGAG 57.176 39.130 0.00 0.00 0.00 3.35
2931 3360 6.671190 TCTACGACGAGTAATTTGAAACAGA 58.329 36.000 0.00 0.00 34.45 3.41
2932 3361 6.922980 TCTACGACGAGTAATTTGAAACAG 57.077 37.500 0.00 0.00 34.45 3.16
2933 3362 7.697352 TTTCTACGACGAGTAATTTGAAACA 57.303 32.000 0.00 0.00 34.45 2.83
2934 3363 7.686938 CCATTTCTACGACGAGTAATTTGAAAC 59.313 37.037 0.00 0.00 32.37 2.78
2935 3364 7.599621 TCCATTTCTACGACGAGTAATTTGAAA 59.400 33.333 0.00 0.00 33.36 2.69
2936 3365 7.092079 TCCATTTCTACGACGAGTAATTTGAA 58.908 34.615 0.00 0.00 34.45 2.69
2937 3366 6.623486 TCCATTTCTACGACGAGTAATTTGA 58.377 36.000 0.00 0.00 34.45 2.69
2938 3367 6.880822 TCCATTTCTACGACGAGTAATTTG 57.119 37.500 0.00 0.00 34.45 2.32
2939 3368 7.039882 ACATCCATTTCTACGACGAGTAATTT 58.960 34.615 0.00 0.00 34.45 1.82
2940 3369 6.570692 ACATCCATTTCTACGACGAGTAATT 58.429 36.000 0.00 0.00 34.45 1.40
2941 3370 6.145338 ACATCCATTTCTACGACGAGTAAT 57.855 37.500 0.00 0.00 34.45 1.89
2942 3371 5.571784 ACATCCATTTCTACGACGAGTAA 57.428 39.130 0.00 0.00 34.45 2.24
2943 3372 6.709397 AGATACATCCATTTCTACGACGAGTA 59.291 38.462 0.00 0.00 0.00 2.59
2944 3373 5.531659 AGATACATCCATTTCTACGACGAGT 59.468 40.000 0.00 0.00 0.00 4.18
2945 3374 6.003234 AGATACATCCATTTCTACGACGAG 57.997 41.667 0.00 0.00 0.00 4.18
2946 3375 6.484308 TGTAGATACATCCATTTCTACGACGA 59.516 38.462 0.00 0.00 42.13 4.20
2947 3376 6.665465 TGTAGATACATCCATTTCTACGACG 58.335 40.000 0.00 0.00 42.13 5.12
2948 3377 8.136165 AGTTGTAGATACATCCATTTCTACGAC 58.864 37.037 16.32 16.32 46.81 4.34
2949 3378 8.234136 AGTTGTAGATACATCCATTTCTACGA 57.766 34.615 0.00 0.00 42.13 3.43
2950 3379 9.961265 TTAGTTGTAGATACATCCATTTCTACG 57.039 33.333 0.00 0.00 42.13 3.51
2979 3408 9.367160 TCACAGAAATGGATGTATCTAGATGTA 57.633 33.333 15.79 4.44 0.00 2.29
2980 3409 8.147058 GTCACAGAAATGGATGTATCTAGATGT 58.853 37.037 15.79 1.25 0.00 3.06
2981 3410 7.328005 CGTCACAGAAATGGATGTATCTAGATG 59.672 40.741 15.79 0.00 0.00 2.90
2982 3411 7.231519 TCGTCACAGAAATGGATGTATCTAGAT 59.768 37.037 10.73 10.73 0.00 1.98
2983 3412 6.546034 TCGTCACAGAAATGGATGTATCTAGA 59.454 38.462 0.00 0.00 0.00 2.43
2984 3413 6.739112 TCGTCACAGAAATGGATGTATCTAG 58.261 40.000 0.00 0.00 0.00 2.43
2985 3414 6.321435 ACTCGTCACAGAAATGGATGTATCTA 59.679 38.462 0.00 0.00 0.00 1.98
2986 3415 5.127845 ACTCGTCACAGAAATGGATGTATCT 59.872 40.000 0.00 0.00 0.00 1.98
2987 3416 5.352284 ACTCGTCACAGAAATGGATGTATC 58.648 41.667 0.00 0.00 0.00 2.24
2988 3417 5.344743 ACTCGTCACAGAAATGGATGTAT 57.655 39.130 0.00 0.00 0.00 2.29
2989 3418 4.801330 ACTCGTCACAGAAATGGATGTA 57.199 40.909 0.00 0.00 0.00 2.29
2990 3419 3.685139 ACTCGTCACAGAAATGGATGT 57.315 42.857 0.00 0.00 0.00 3.06
2991 3420 6.508563 CGAATTACTCGTCACAGAAATGGATG 60.509 42.308 0.00 0.00 42.89 3.51
2992 3421 5.520288 CGAATTACTCGTCACAGAAATGGAT 59.480 40.000 0.00 0.00 42.89 3.41
2993 3422 4.862574 CGAATTACTCGTCACAGAAATGGA 59.137 41.667 0.00 0.00 42.89 3.41
2994 3423 4.032900 CCGAATTACTCGTCACAGAAATGG 59.967 45.833 0.00 0.00 46.65 3.16
2995 3424 4.862574 TCCGAATTACTCGTCACAGAAATG 59.137 41.667 0.00 0.00 46.65 2.32
2996 3425 5.068234 TCCGAATTACTCGTCACAGAAAT 57.932 39.130 0.00 0.00 46.65 2.17
2997 3426 4.508461 TCCGAATTACTCGTCACAGAAA 57.492 40.909 0.00 0.00 46.65 2.52
2998 3427 4.232221 GTTCCGAATTACTCGTCACAGAA 58.768 43.478 0.00 0.00 46.65 3.02
2999 3428 3.253921 TGTTCCGAATTACTCGTCACAGA 59.746 43.478 0.00 0.00 46.65 3.41
3000 3429 3.571571 TGTTCCGAATTACTCGTCACAG 58.428 45.455 0.00 0.00 46.65 3.66
3001 3430 3.253921 TCTGTTCCGAATTACTCGTCACA 59.746 43.478 0.00 0.00 46.65 3.58
3002 3431 3.829948 TCTGTTCCGAATTACTCGTCAC 58.170 45.455 0.00 0.00 46.65 3.67
3003 3432 3.119602 CCTCTGTTCCGAATTACTCGTCA 60.120 47.826 0.00 0.00 46.65 4.35
3004 3433 3.436496 CCTCTGTTCCGAATTACTCGTC 58.564 50.000 0.00 0.00 46.65 4.20
3005 3434 2.165845 CCCTCTGTTCCGAATTACTCGT 59.834 50.000 0.00 0.00 46.65 4.18
3007 3436 3.447944 ACTCCCTCTGTTCCGAATTACTC 59.552 47.826 0.00 0.00 0.00 2.59
3008 3437 3.442076 ACTCCCTCTGTTCCGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
3009 3438 3.889520 ACTCCCTCTGTTCCGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
3010 3439 5.021458 AGTTACTCCCTCTGTTCCGAATTA 58.979 41.667 0.00 0.00 0.00 1.40
3011 3440 3.838903 AGTTACTCCCTCTGTTCCGAATT 59.161 43.478 0.00 0.00 0.00 2.17
3012 3441 3.442076 AGTTACTCCCTCTGTTCCGAAT 58.558 45.455 0.00 0.00 0.00 3.34
3013 3442 2.824341 GAGTTACTCCCTCTGTTCCGAA 59.176 50.000 0.00 0.00 0.00 4.30
3014 3443 2.041350 AGAGTTACTCCCTCTGTTCCGA 59.959 50.000 8.96 0.00 37.88 4.55
3015 3444 2.448453 AGAGTTACTCCCTCTGTTCCG 58.552 52.381 8.96 0.00 37.88 4.30
3021 3450 1.190643 GCTGCAGAGTTACTCCCTCT 58.809 55.000 20.43 0.00 39.87 3.69
3022 3451 1.190643 AGCTGCAGAGTTACTCCCTC 58.809 55.000 20.43 0.00 0.00 4.30
3023 3452 1.552792 GAAGCTGCAGAGTTACTCCCT 59.447 52.381 20.43 0.00 0.00 4.20
3024 3453 1.406205 GGAAGCTGCAGAGTTACTCCC 60.406 57.143 20.43 0.00 0.00 4.30
3025 3454 1.737363 CGGAAGCTGCAGAGTTACTCC 60.737 57.143 20.43 11.41 0.00 3.85
3026 3455 1.634702 CGGAAGCTGCAGAGTTACTC 58.365 55.000 20.43 3.85 0.00 2.59
3027 3456 0.247736 CCGGAAGCTGCAGAGTTACT 59.752 55.000 20.43 0.53 0.00 2.24
3028 3457 0.037232 ACCGGAAGCTGCAGAGTTAC 60.037 55.000 20.43 9.71 0.00 2.50
3029 3458 0.037326 CACCGGAAGCTGCAGAGTTA 60.037 55.000 20.43 0.00 0.00 2.24
3030 3459 1.302033 CACCGGAAGCTGCAGAGTT 60.302 57.895 20.43 9.94 0.00 3.01
3103 3533 1.689273 AGCGGAATGGATCACCTAGAC 59.311 52.381 0.00 0.00 37.04 2.59
3105 3535 1.336332 CGAGCGGAATGGATCACCTAG 60.336 57.143 0.00 0.00 37.04 3.02
3153 3583 6.321181 GCCCACAATAAGTTTATCAGAATCCA 59.679 38.462 0.00 0.00 0.00 3.41
3214 3652 7.483307 GCTATGAGGTTGAATTTATTGCAGAA 58.517 34.615 0.00 0.00 0.00 3.02
3231 3669 1.967066 AGGGAGATGAACGCTATGAGG 59.033 52.381 0.00 0.00 0.00 3.86
3238 3676 1.087501 GGAACAAGGGAGATGAACGC 58.912 55.000 0.00 0.00 0.00 4.84
3403 3847 5.457473 GCTAACTCTCAGTTTAGCGATCTTC 59.543 44.000 5.40 0.00 39.51 2.87
3478 3922 0.987294 ACCTGGGACTGACCTCAATG 59.013 55.000 0.00 0.00 38.98 2.82
3526 3973 0.532573 CATCCTACACTGTGGCGTCT 59.467 55.000 13.09 0.00 0.00 4.18
3544 3991 0.400213 ATCCCGCAAACAGGAACTCA 59.600 50.000 0.00 0.00 34.60 3.41
3559 4009 3.604582 CCAGTGAAGAAAGACAGATCCC 58.395 50.000 0.00 0.00 0.00 3.85
3598 4048 6.234920 TGAAATATCCTCGGTTGTTCTTCAA 58.765 36.000 0.00 0.00 0.00 2.69
3664 4114 5.987777 ATGAGAGCATGAATTCTTTCTCG 57.012 39.130 12.90 0.00 35.10 4.04
3713 4163 3.649073 TCATACAGACGACACAAACAGG 58.351 45.455 0.00 0.00 0.00 4.00
3916 4378 9.555727 GCTCTAATAAACCAGTAAATATCACCA 57.444 33.333 0.00 0.00 0.00 4.17
3917 4379 9.555727 TGCTCTAATAAACCAGTAAATATCACC 57.444 33.333 0.00 0.00 0.00 4.02
3953 4415 4.959596 TTGATCAGAATCTGAAAGCTGC 57.040 40.909 17.59 3.82 44.04 5.25
3955 4417 6.436532 ACCAAATTGATCAGAATCTGAAAGCT 59.563 34.615 17.59 0.00 44.04 3.74
3985 4447 4.946772 TGTTGTTGTGTCTGGAGAAAATGA 59.053 37.500 0.00 0.00 0.00 2.57
3996 4458 5.069119 TCAGACTATCAGTGTTGTTGTGTCT 59.931 40.000 0.00 0.00 33.26 3.41
4055 4518 2.052047 AACTGGGGCTAACAGCGTGT 62.052 55.000 4.71 0.00 43.62 4.49
4149 4617 1.428219 CAGATGCCTGCTTTGCGAG 59.572 57.895 0.00 0.00 33.07 5.03
4185 4660 4.250305 GGCCGGCGGTATGGATGT 62.250 66.667 28.82 0.00 0.00 3.06
4259 4734 2.801631 GGTGATGGAGGAGGAGCCG 61.802 68.421 0.00 0.00 43.43 5.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.