Multiple sequence alignment - TraesCS2A01G428700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G428700 chr2A 100.000 2717 0 0 1 2717 682014951 682017667 0.000000e+00 5018.0
1 TraesCS2A01G428700 chr2A 89.257 754 34 9 739 1446 38224480 38223728 0.000000e+00 900.0
2 TraesCS2A01G428700 chr2A 89.200 750 36 19 738 1446 718915326 718916071 0.000000e+00 894.0
3 TraesCS2A01G428700 chr2A 89.365 724 55 16 742 1446 752029803 752030523 0.000000e+00 891.0
4 TraesCS2A01G428700 chr2A 96.802 344 11 0 1444 1787 718915928 718916271 2.350000e-160 575.0
5 TraesCS2A01G428700 chr2A 96.802 344 11 0 1444 1787 752030380 752030723 2.350000e-160 575.0
6 TraesCS2A01G428700 chr2A 92.405 316 21 3 2245 2559 682173824 682174137 5.340000e-122 448.0
7 TraesCS2A01G428700 chr2A 95.853 217 6 1 2030 2243 682159856 682160072 5.570000e-92 348.0
8 TraesCS2A01G428700 chr2A 95.238 105 4 1 2614 2717 682174392 682174288 6.020000e-37 165.0
9 TraesCS2A01G428700 chr2A 91.765 85 4 3 102 184 179215791 179215708 6.150000e-22 115.0
10 TraesCS2A01G428700 chr2A 96.429 56 2 0 2558 2613 682174159 682174214 2.880000e-15 93.5
11 TraesCS2A01G428700 chr2A 97.561 41 1 0 1992 2032 682159800 682159840 1.350000e-08 71.3
12 TraesCS2A01G428700 chr3A 92.504 707 46 5 744 1446 720860040 720859337 0.000000e+00 1005.0
13 TraesCS2A01G428700 chr3A 95.930 344 14 0 1444 1787 720859480 720859137 2.360000e-155 558.0
14 TraesCS2A01G428700 chr3A 86.768 393 31 10 189 578 23319236 23319610 4.180000e-113 418.0
15 TraesCS2A01G428700 chr3A 94.931 217 11 0 1749 1965 720859207 720858991 9.320000e-90 340.0
16 TraesCS2A01G428700 chr1D 92.470 664 47 2 784 1446 405280407 405279746 0.000000e+00 946.0
17 TraesCS2A01G428700 chr1A 89.481 751 31 15 742 1446 61034600 61035348 0.000000e+00 905.0
18 TraesCS2A01G428700 chr1A 88.811 715 46 16 742 1445 513929266 513929957 0.000000e+00 846.0
19 TraesCS2A01G428700 chr1A 87.633 752 39 14 742 1446 325030648 325031392 0.000000e+00 824.0
20 TraesCS2A01G428700 chr1A 91.714 531 30 3 1444 1965 513929806 513930331 0.000000e+00 725.0
21 TraesCS2A01G428700 chr1A 92.723 426 21 2 1030 1446 4869854 4869430 8.320000e-170 606.0
22 TraesCS2A01G428700 chr1A 94.779 249 13 0 1717 1965 499804551 499804799 3.280000e-104 388.0
23 TraesCS2A01G428700 chr1A 94.470 217 12 0 1749 1965 61035478 61035694 4.330000e-88 335.0
24 TraesCS2A01G428700 chr7A 89.583 720 57 15 744 1446 129153905 129153187 0.000000e+00 898.0
25 TraesCS2A01G428700 chr7A 89.043 721 57 7 744 1446 595049343 595048627 0.000000e+00 874.0
26 TraesCS2A01G428700 chr7A 88.400 750 36 7 744 1446 669743575 669744320 0.000000e+00 856.0
27 TraesCS2A01G428700 chr7A 95.349 344 16 0 1444 1787 129153330 129152987 5.110000e-152 547.0
28 TraesCS2A01G428700 chr7A 92.128 343 27 0 1444 1786 258416530 258416188 4.070000e-133 484.0
29 TraesCS2A01G428700 chr7A 93.548 217 13 1 1749 1965 669744450 669744665 3.370000e-84 322.0
30 TraesCS2A01G428700 chr4A 89.052 749 34 18 745 1446 620627539 620626792 0.000000e+00 885.0
31 TraesCS2A01G428700 chr4A 95.058 344 16 1 1444 1787 594998634 594998976 8.560000e-150 540.0
32 TraesCS2A01G428700 chr4A 94.884 215 11 0 1749 1963 626062581 626062795 1.210000e-88 337.0
33 TraesCS2A01G428700 chr4A 94.009 217 13 0 1749 1965 95191249 95191033 2.020000e-86 329.0
34 TraesCS2A01G428700 chr5A 88.889 720 60 16 744 1446 438842600 438843316 0.000000e+00 869.0
35 TraesCS2A01G428700 chr5A 96.304 514 19 0 933 1446 40057899 40058412 0.000000e+00 845.0
36 TraesCS2A01G428700 chr5A 96.221 344 13 0 1444 1787 40058269 40058612 5.080000e-157 564.0
37 TraesCS2A01G428700 chr5A 95.954 346 13 1 1444 1789 438843173 438843517 6.570000e-156 560.0
38 TraesCS2A01G428700 chr5A 93.488 215 14 0 1749 1963 40058542 40058756 1.210000e-83 320.0
39 TraesCS2A01G428700 chr5A 93.333 75 3 2 111 184 16970022 16970095 2.860000e-20 110.0
40 TraesCS2A01G428700 chr7D 91.358 648 22 3 1 614 632843652 632843005 0.000000e+00 856.0
41 TraesCS2A01G428700 chr7D 93.421 76 3 2 111 184 83637299 83637374 7.950000e-21 111.0
42 TraesCS2A01G428700 chr6A 88.188 745 40 18 742 1441 133807875 133808616 0.000000e+00 845.0
43 TraesCS2A01G428700 chr6A 84.739 747 62 25 744 1446 62132049 62131311 0.000000e+00 701.0
44 TraesCS2A01G428700 chr6A 93.548 217 14 0 1749 1965 593936997 593936781 9.380000e-85 324.0
45 TraesCS2A01G428700 chr6A 94.521 73 4 0 112 184 457379366 457379438 2.210000e-21 113.0
46 TraesCS2A01G428700 chr2B 88.515 714 48 10 2030 2717 642793280 642793985 0.000000e+00 833.0
47 TraesCS2A01G428700 chrUn 91.231 593 38 9 866 1446 98247863 98248453 0.000000e+00 795.0
48 TraesCS2A01G428700 chr3D 86.977 430 37 10 189 614 275934672 275934258 1.470000e-127 466.0
49 TraesCS2A01G428700 chr3D 89.831 177 11 5 189 359 31112448 31112623 1.270000e-53 220.0
50 TraesCS2A01G428700 chr4B 86.682 428 39 9 189 614 71236551 71236962 2.470000e-125 459.0
51 TraesCS2A01G428700 chr5D 83.827 439 56 6 189 615 504737156 504737591 1.170000e-108 403.0
52 TraesCS2A01G428700 chr7B 82.877 438 47 11 189 614 373775233 373775654 4.270000e-98 368.0
53 TraesCS2A01G428700 chr3B 78.963 347 56 8 282 614 470895013 470895356 1.270000e-53 220.0
54 TraesCS2A01G428700 chr3B 92.308 78 5 1 107 184 354006613 354006537 2.860000e-20 110.0
55 TraesCS2A01G428700 chr2D 90.909 121 8 1 2106 2223 539021479 539021599 2.800000e-35 159.0
56 TraesCS2A01G428700 chr6B 94.667 75 3 1 111 184 438924486 438924560 6.150000e-22 115.0
57 TraesCS2A01G428700 chr1B 93.243 74 5 0 111 184 17656127 17656200 2.860000e-20 110.0
58 TraesCS2A01G428700 chr1B 93.333 75 3 2 111 184 51228043 51228116 2.860000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G428700 chr2A 682014951 682017667 2716 False 5018.000000 5018 100.000000 1 2717 1 chr2A.!!$F1 2716
1 TraesCS2A01G428700 chr2A 38223728 38224480 752 True 900.000000 900 89.257000 739 1446 1 chr2A.!!$R1 707
2 TraesCS2A01G428700 chr2A 718915326 718916271 945 False 734.500000 894 93.001000 738 1787 2 chr2A.!!$F4 1049
3 TraesCS2A01G428700 chr2A 752029803 752030723 920 False 733.000000 891 93.083500 742 1787 2 chr2A.!!$F5 1045
4 TraesCS2A01G428700 chr3A 720858991 720860040 1049 True 634.333333 1005 94.455000 744 1965 3 chr3A.!!$R1 1221
5 TraesCS2A01G428700 chr1D 405279746 405280407 661 True 946.000000 946 92.470000 784 1446 1 chr1D.!!$R1 662
6 TraesCS2A01G428700 chr1A 325030648 325031392 744 False 824.000000 824 87.633000 742 1446 1 chr1A.!!$F1 704
7 TraesCS2A01G428700 chr1A 513929266 513930331 1065 False 785.500000 846 90.262500 742 1965 2 chr1A.!!$F4 1223
8 TraesCS2A01G428700 chr1A 61034600 61035694 1094 False 620.000000 905 91.975500 742 1965 2 chr1A.!!$F3 1223
9 TraesCS2A01G428700 chr7A 595048627 595049343 716 True 874.000000 874 89.043000 744 1446 1 chr7A.!!$R2 702
10 TraesCS2A01G428700 chr7A 129152987 129153905 918 True 722.500000 898 92.466000 744 1787 2 chr7A.!!$R3 1043
11 TraesCS2A01G428700 chr7A 669743575 669744665 1090 False 589.000000 856 90.974000 744 1965 2 chr7A.!!$F1 1221
12 TraesCS2A01G428700 chr4A 620626792 620627539 747 True 885.000000 885 89.052000 745 1446 1 chr4A.!!$R2 701
13 TraesCS2A01G428700 chr5A 438842600 438843517 917 False 714.500000 869 92.421500 744 1789 2 chr5A.!!$F3 1045
14 TraesCS2A01G428700 chr5A 40057899 40058756 857 False 576.333333 845 95.337667 933 1963 3 chr5A.!!$F2 1030
15 TraesCS2A01G428700 chr7D 632843005 632843652 647 True 856.000000 856 91.358000 1 614 1 chr7D.!!$R1 613
16 TraesCS2A01G428700 chr6A 133807875 133808616 741 False 845.000000 845 88.188000 742 1441 1 chr6A.!!$F1 699
17 TraesCS2A01G428700 chr6A 62131311 62132049 738 True 701.000000 701 84.739000 744 1446 1 chr6A.!!$R1 702
18 TraesCS2A01G428700 chr2B 642793280 642793985 705 False 833.000000 833 88.515000 2030 2717 1 chr2B.!!$F1 687
19 TraesCS2A01G428700 chrUn 98247863 98248453 590 False 795.000000 795 91.231000 866 1446 1 chrUn.!!$F1 580

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
597 606 0.31777 AAATGAACCACAGCAACGCG 60.318 50.0 3.53 3.53 0.0 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2002 2292 0.030235 CGTCTCGATCCAATACCGCA 59.97 55.0 0.0 0.0 0.0 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 5.117287 GGACGCTAAATAGAGAAGTTATGCG 59.883 44.000 0.00 0.00 44.23 4.73
49 50 9.601217 AATAGAGAAGTTATGCGTTATTCTGTT 57.399 29.630 5.09 0.00 30.62 3.16
71 72 8.124808 TGTTTATTACCCTTTCCACATTAACC 57.875 34.615 0.00 0.00 0.00 2.85
159 160 2.034687 CTTGTGCAGGGTCTGGGG 59.965 66.667 0.00 0.00 31.21 4.96
188 189 3.071602 CCGATCACTTTGGATCTACCCAT 59.928 47.826 0.00 0.00 41.21 4.00
388 397 9.762381 AGTAATAACAGTTTATTTCCCAATGGA 57.238 29.630 0.00 0.00 38.58 3.41
390 399 5.405935 AACAGTTTATTTCCCAATGGAGC 57.594 39.130 0.00 0.00 43.07 4.70
391 400 4.415596 ACAGTTTATTTCCCAATGGAGCA 58.584 39.130 0.00 0.00 43.07 4.26
392 401 4.837860 ACAGTTTATTTCCCAATGGAGCAA 59.162 37.500 0.00 0.00 43.07 3.91
393 402 5.306678 ACAGTTTATTTCCCAATGGAGCAAA 59.693 36.000 0.00 0.00 43.07 3.68
394 403 6.183361 ACAGTTTATTTCCCAATGGAGCAAAA 60.183 34.615 0.00 0.00 43.07 2.44
395 404 6.147656 CAGTTTATTTCCCAATGGAGCAAAAC 59.852 38.462 0.00 5.13 43.07 2.43
396 405 5.815233 TTATTTCCCAATGGAGCAAAACA 57.185 34.783 0.00 0.00 43.07 2.83
397 406 4.703379 ATTTCCCAATGGAGCAAAACAA 57.297 36.364 0.00 0.00 43.07 2.83
398 407 3.467374 TTCCCAATGGAGCAAAACAAC 57.533 42.857 0.00 0.00 43.07 3.32
399 408 1.691434 TCCCAATGGAGCAAAACAACC 59.309 47.619 0.00 0.00 35.03 3.77
400 409 1.693606 CCCAATGGAGCAAAACAACCT 59.306 47.619 0.00 0.00 0.00 3.50
401 410 2.896685 CCCAATGGAGCAAAACAACCTA 59.103 45.455 0.00 0.00 0.00 3.08
402 411 3.515104 CCCAATGGAGCAAAACAACCTAT 59.485 43.478 0.00 0.00 0.00 2.57
403 412 4.020307 CCCAATGGAGCAAAACAACCTATT 60.020 41.667 0.00 0.00 0.00 1.73
404 413 5.186797 CCCAATGGAGCAAAACAACCTATTA 59.813 40.000 0.00 0.00 0.00 0.98
405 414 6.332630 CCAATGGAGCAAAACAACCTATTAG 58.667 40.000 0.00 0.00 0.00 1.73
406 415 5.582689 ATGGAGCAAAACAACCTATTAGC 57.417 39.130 0.00 0.00 0.00 3.09
407 416 4.402829 TGGAGCAAAACAACCTATTAGCA 58.597 39.130 0.00 0.00 0.00 3.49
408 417 4.830046 TGGAGCAAAACAACCTATTAGCAA 59.170 37.500 0.00 0.00 0.00 3.91
409 418 5.048083 TGGAGCAAAACAACCTATTAGCAAG 60.048 40.000 0.00 0.00 0.00 4.01
410 419 5.048013 GGAGCAAAACAACCTATTAGCAAGT 60.048 40.000 0.00 0.00 0.00 3.16
411 420 6.013842 AGCAAAACAACCTATTAGCAAGTC 57.986 37.500 0.00 0.00 0.00 3.01
412 421 5.048013 AGCAAAACAACCTATTAGCAAGTCC 60.048 40.000 0.00 0.00 0.00 3.85
413 422 5.278758 GCAAAACAACCTATTAGCAAGTCCA 60.279 40.000 0.00 0.00 0.00 4.02
414 423 6.572314 GCAAAACAACCTATTAGCAAGTCCAT 60.572 38.462 0.00 0.00 0.00 3.41
415 424 7.378181 CAAAACAACCTATTAGCAAGTCCATT 58.622 34.615 0.00 0.00 0.00 3.16
416 425 7.539034 AAACAACCTATTAGCAAGTCCATTT 57.461 32.000 0.00 0.00 0.00 2.32
417 426 6.759497 ACAACCTATTAGCAAGTCCATTTC 57.241 37.500 0.00 0.00 0.00 2.17
418 427 6.485171 ACAACCTATTAGCAAGTCCATTTCT 58.515 36.000 0.00 0.00 0.00 2.52
419 428 6.599638 ACAACCTATTAGCAAGTCCATTTCTC 59.400 38.462 0.00 0.00 0.00 2.87
420 429 6.567602 ACCTATTAGCAAGTCCATTTCTCT 57.432 37.500 0.00 0.00 0.00 3.10
421 430 7.676683 ACCTATTAGCAAGTCCATTTCTCTA 57.323 36.000 0.00 0.00 0.00 2.43
422 431 8.090788 ACCTATTAGCAAGTCCATTTCTCTAA 57.909 34.615 0.00 0.00 0.00 2.10
423 432 7.988028 ACCTATTAGCAAGTCCATTTCTCTAAC 59.012 37.037 0.00 0.00 0.00 2.34
424 433 8.207545 CCTATTAGCAAGTCCATTTCTCTAACT 58.792 37.037 0.00 0.00 0.00 2.24
425 434 9.255304 CTATTAGCAAGTCCATTTCTCTAACTC 57.745 37.037 0.00 0.00 0.00 3.01
426 435 5.753721 AGCAAGTCCATTTCTCTAACTCT 57.246 39.130 0.00 0.00 0.00 3.24
427 436 6.859112 AGCAAGTCCATTTCTCTAACTCTA 57.141 37.500 0.00 0.00 0.00 2.43
428 437 7.430760 AGCAAGTCCATTTCTCTAACTCTAT 57.569 36.000 0.00 0.00 0.00 1.98
429 438 7.856415 AGCAAGTCCATTTCTCTAACTCTATT 58.144 34.615 0.00 0.00 0.00 1.73
430 439 8.982723 AGCAAGTCCATTTCTCTAACTCTATTA 58.017 33.333 0.00 0.00 0.00 0.98
431 440 9.255304 GCAAGTCCATTTCTCTAACTCTATTAG 57.745 37.037 0.00 0.00 0.00 1.73
432 441 9.255304 CAAGTCCATTTCTCTAACTCTATTAGC 57.745 37.037 0.00 0.00 0.00 3.09
433 442 8.540507 AGTCCATTTCTCTAACTCTATTAGCA 57.459 34.615 0.00 0.00 0.00 3.49
434 443 8.982723 AGTCCATTTCTCTAACTCTATTAGCAA 58.017 33.333 0.00 0.00 0.00 3.91
435 444 9.255304 GTCCATTTCTCTAACTCTATTAGCAAG 57.745 37.037 0.00 0.00 0.00 4.01
436 445 8.982723 TCCATTTCTCTAACTCTATTAGCAAGT 58.017 33.333 0.00 0.00 0.00 3.16
437 446 9.606631 CCATTTCTCTAACTCTATTAGCAAGTT 57.393 33.333 3.95 3.95 37.10 2.66
448 457 9.726438 ACTCTATTAGCAAGTTCATTTAGTTGT 57.274 29.630 0.00 0.00 32.28 3.32
482 491 9.793259 TTGAAGGAAGTCTATTTAATTGTCAGT 57.207 29.630 0.00 0.00 0.00 3.41
545 554 8.900983 ATGTGCATTTGTTATTTTTGTTAGGT 57.099 26.923 0.00 0.00 0.00 3.08
546 555 8.723942 TGTGCATTTGTTATTTTTGTTAGGTT 57.276 26.923 0.00 0.00 0.00 3.50
547 556 8.607459 TGTGCATTTGTTATTTTTGTTAGGTTG 58.393 29.630 0.00 0.00 0.00 3.77
548 557 7.585936 GTGCATTTGTTATTTTTGTTAGGTTGC 59.414 33.333 0.00 0.00 0.00 4.17
549 558 7.280876 TGCATTTGTTATTTTTGTTAGGTTGCA 59.719 29.630 0.00 0.00 0.00 4.08
550 559 7.585936 GCATTTGTTATTTTTGTTAGGTTGCAC 59.414 33.333 0.00 0.00 0.00 4.57
551 560 8.607459 CATTTGTTATTTTTGTTAGGTTGCACA 58.393 29.630 0.00 0.00 0.00 4.57
552 561 8.723942 TTTGTTATTTTTGTTAGGTTGCACAT 57.276 26.923 0.00 0.00 0.00 3.21
553 562 7.706281 TGTTATTTTTGTTAGGTTGCACATG 57.294 32.000 0.00 0.00 0.00 3.21
554 563 7.268586 TGTTATTTTTGTTAGGTTGCACATGT 58.731 30.769 0.00 0.00 0.00 3.21
555 564 7.223582 TGTTATTTTTGTTAGGTTGCACATGTG 59.776 33.333 21.83 21.83 0.00 3.21
556 565 4.727507 TTTTGTTAGGTTGCACATGTGT 57.272 36.364 26.01 9.30 0.00 3.72
557 566 5.836821 TTTTGTTAGGTTGCACATGTGTA 57.163 34.783 26.01 20.04 0.00 2.90
558 567 6.398234 TTTTGTTAGGTTGCACATGTGTAT 57.602 33.333 26.01 10.44 0.00 2.29
559 568 5.369685 TTGTTAGGTTGCACATGTGTATG 57.630 39.130 26.01 1.97 40.24 2.39
560 569 3.755905 TGTTAGGTTGCACATGTGTATGG 59.244 43.478 26.01 1.49 38.66 2.74
561 570 2.877097 AGGTTGCACATGTGTATGGA 57.123 45.000 26.01 5.19 38.66 3.41
562 571 2.715046 AGGTTGCACATGTGTATGGAG 58.285 47.619 26.01 0.00 38.66 3.86
563 572 1.133025 GGTTGCACATGTGTATGGAGC 59.867 52.381 26.01 13.25 38.66 4.70
564 573 1.811965 GTTGCACATGTGTATGGAGCA 59.188 47.619 26.01 13.67 43.19 4.26
565 574 2.197283 TGCACATGTGTATGGAGCAA 57.803 45.000 26.01 0.00 42.49 3.91
566 575 2.725637 TGCACATGTGTATGGAGCAAT 58.274 42.857 26.01 0.00 42.49 3.56
567 576 3.090790 TGCACATGTGTATGGAGCAATT 58.909 40.909 26.01 0.00 42.49 2.32
568 577 3.119424 TGCACATGTGTATGGAGCAATTG 60.119 43.478 26.01 0.00 42.49 2.32
569 578 3.129113 GCACATGTGTATGGAGCAATTGA 59.871 43.478 26.01 0.00 38.51 2.57
570 579 4.202080 GCACATGTGTATGGAGCAATTGAT 60.202 41.667 26.01 1.34 38.51 2.57
571 580 5.680408 GCACATGTGTATGGAGCAATTGATT 60.680 40.000 26.01 0.00 38.51 2.57
572 581 6.459985 GCACATGTGTATGGAGCAATTGATTA 60.460 38.462 26.01 0.00 38.51 1.75
573 582 7.654568 CACATGTGTATGGAGCAATTGATTAT 58.345 34.615 18.03 4.69 38.66 1.28
574 583 8.139350 CACATGTGTATGGAGCAATTGATTATT 58.861 33.333 18.03 0.00 38.66 1.40
575 584 9.353431 ACATGTGTATGGAGCAATTGATTATTA 57.647 29.630 10.34 0.00 38.66 0.98
595 604 8.903570 TTATTATAAAATGAACCACAGCAACG 57.096 30.769 0.00 0.00 0.00 4.10
596 605 1.851658 AAAATGAACCACAGCAACGC 58.148 45.000 0.00 0.00 0.00 4.84
597 606 0.317770 AAATGAACCACAGCAACGCG 60.318 50.000 3.53 3.53 0.00 6.01
598 607 1.444119 AATGAACCACAGCAACGCGT 61.444 50.000 5.58 5.58 0.00 6.01
599 608 2.052237 GAACCACAGCAACGCGTG 60.052 61.111 14.98 8.57 34.67 5.34
600 609 2.512745 AACCACAGCAACGCGTGA 60.513 55.556 14.98 0.00 36.03 4.35
601 610 2.430080 GAACCACAGCAACGCGTGAG 62.430 60.000 14.98 10.48 36.03 3.51
602 611 2.661537 CCACAGCAACGCGTGAGA 60.662 61.111 14.98 0.00 36.03 3.27
603 612 2.029288 CCACAGCAACGCGTGAGAT 61.029 57.895 14.98 4.28 36.03 2.75
604 613 0.735978 CCACAGCAACGCGTGAGATA 60.736 55.000 14.98 0.00 36.03 1.98
605 614 1.280982 CACAGCAACGCGTGAGATAT 58.719 50.000 14.98 0.00 36.03 1.63
606 615 1.256376 CACAGCAACGCGTGAGATATC 59.744 52.381 14.98 0.00 36.03 1.63
607 616 1.135112 ACAGCAACGCGTGAGATATCA 60.135 47.619 14.98 0.00 0.00 2.15
608 617 2.130395 CAGCAACGCGTGAGATATCAT 58.870 47.619 14.98 0.00 0.00 2.45
609 618 2.154580 CAGCAACGCGTGAGATATCATC 59.845 50.000 14.98 0.69 0.00 2.92
610 619 2.035193 AGCAACGCGTGAGATATCATCT 59.965 45.455 14.98 0.00 43.70 2.90
611 620 3.253432 AGCAACGCGTGAGATATCATCTA 59.747 43.478 14.98 0.00 40.38 1.98
612 621 3.605916 GCAACGCGTGAGATATCATCTAG 59.394 47.826 14.98 0.00 40.38 2.43
613 622 4.788690 CAACGCGTGAGATATCATCTAGT 58.211 43.478 14.98 0.00 40.38 2.57
614 623 5.617087 GCAACGCGTGAGATATCATCTAGTA 60.617 44.000 14.98 0.00 40.38 1.82
615 624 6.547283 CAACGCGTGAGATATCATCTAGTAT 58.453 40.000 14.98 0.00 40.38 2.12
616 625 6.745159 ACGCGTGAGATATCATCTAGTATT 57.255 37.500 12.93 0.00 40.38 1.89
617 626 7.845066 ACGCGTGAGATATCATCTAGTATTA 57.155 36.000 12.93 0.00 40.38 0.98
618 627 8.265165 ACGCGTGAGATATCATCTAGTATTAA 57.735 34.615 12.93 0.00 40.38 1.40
619 628 8.894731 ACGCGTGAGATATCATCTAGTATTAAT 58.105 33.333 12.93 0.00 40.38 1.40
620 629 9.163903 CGCGTGAGATATCATCTAGTATTAATG 57.836 37.037 5.32 0.00 40.38 1.90
647 656 9.569122 AAAATTACTGTACAGTTGTTCTATGGT 57.431 29.630 32.15 7.48 42.54 3.55
648 657 9.569122 AAATTACTGTACAGTTGTTCTATGGTT 57.431 29.630 32.15 6.43 42.54 3.67
649 658 8.773404 ATTACTGTACAGTTGTTCTATGGTTC 57.227 34.615 32.15 0.00 42.54 3.62
650 659 6.169557 ACTGTACAGTTGTTCTATGGTTCA 57.830 37.500 22.95 0.00 38.83 3.18
651 660 6.223852 ACTGTACAGTTGTTCTATGGTTCAG 58.776 40.000 22.95 0.00 38.83 3.02
652 661 6.041637 ACTGTACAGTTGTTCTATGGTTCAGA 59.958 38.462 22.95 0.00 38.83 3.27
653 662 6.455647 TGTACAGTTGTTCTATGGTTCAGAG 58.544 40.000 0.00 0.00 0.00 3.35
654 663 4.319177 ACAGTTGTTCTATGGTTCAGAGC 58.681 43.478 0.00 0.00 0.00 4.09
655 664 4.202357 ACAGTTGTTCTATGGTTCAGAGCA 60.202 41.667 0.00 0.00 37.73 4.26
656 665 4.940046 CAGTTGTTCTATGGTTCAGAGCAT 59.060 41.667 0.00 0.00 45.39 3.79
657 666 4.940046 AGTTGTTCTATGGTTCAGAGCATG 59.060 41.667 1.68 0.00 43.44 4.06
658 667 3.273434 TGTTCTATGGTTCAGAGCATGC 58.727 45.455 10.51 10.51 43.44 4.06
659 668 3.273434 GTTCTATGGTTCAGAGCATGCA 58.727 45.455 21.98 0.00 43.44 3.96
660 669 3.632643 TCTATGGTTCAGAGCATGCAA 57.367 42.857 21.98 1.65 43.44 4.08
661 670 3.954200 TCTATGGTTCAGAGCATGCAAA 58.046 40.909 21.98 5.60 43.44 3.68
662 671 4.334552 TCTATGGTTCAGAGCATGCAAAA 58.665 39.130 21.98 5.22 43.44 2.44
663 672 4.766373 TCTATGGTTCAGAGCATGCAAAAA 59.234 37.500 21.98 5.59 43.44 1.94
685 694 7.939784 AAAACTAGTTCTTCTGTTCTTTGGT 57.060 32.000 8.95 0.00 0.00 3.67
686 695 7.939784 AAACTAGTTCTTCTGTTCTTTGGTT 57.060 32.000 8.95 0.00 0.00 3.67
687 696 7.939784 AACTAGTTCTTCTGTTCTTTGGTTT 57.060 32.000 1.12 0.00 0.00 3.27
688 697 7.939784 ACTAGTTCTTCTGTTCTTTGGTTTT 57.060 32.000 0.00 0.00 0.00 2.43
689 698 7.986562 ACTAGTTCTTCTGTTCTTTGGTTTTC 58.013 34.615 0.00 0.00 0.00 2.29
690 699 6.208988 AGTTCTTCTGTTCTTTGGTTTTCC 57.791 37.500 0.00 0.00 41.14 3.13
703 712 3.278574 TGGTTTTCCATTAGCTCCATCG 58.721 45.455 0.00 0.00 46.22 3.84
704 713 3.054728 TGGTTTTCCATTAGCTCCATCGA 60.055 43.478 0.00 0.00 46.22 3.59
705 714 4.137543 GGTTTTCCATTAGCTCCATCGAT 58.862 43.478 0.00 0.00 40.31 3.59
706 715 5.163248 TGGTTTTCCATTAGCTCCATCGATA 60.163 40.000 0.00 0.00 46.22 2.92
707 716 5.179555 GGTTTTCCATTAGCTCCATCGATAC 59.820 44.000 0.00 0.00 40.31 2.24
708 717 5.545063 TTTCCATTAGCTCCATCGATACA 57.455 39.130 0.00 0.00 0.00 2.29
709 718 5.745312 TTCCATTAGCTCCATCGATACAT 57.255 39.130 0.00 0.00 0.00 2.29
710 719 5.330455 TCCATTAGCTCCATCGATACATC 57.670 43.478 0.00 0.00 0.00 3.06
711 720 4.772100 TCCATTAGCTCCATCGATACATCA 59.228 41.667 0.00 0.00 0.00 3.07
712 721 5.423290 TCCATTAGCTCCATCGATACATCAT 59.577 40.000 0.00 0.00 0.00 2.45
713 722 6.607198 TCCATTAGCTCCATCGATACATCATA 59.393 38.462 0.00 0.00 0.00 2.15
714 723 7.288621 TCCATTAGCTCCATCGATACATCATAT 59.711 37.037 0.00 0.00 0.00 1.78
715 724 7.384387 CCATTAGCTCCATCGATACATCATATG 59.616 40.741 0.00 0.00 0.00 1.78
716 725 4.691175 AGCTCCATCGATACATCATATGC 58.309 43.478 0.00 0.00 0.00 3.14
717 726 4.161001 AGCTCCATCGATACATCATATGCA 59.839 41.667 0.00 0.00 0.00 3.96
718 727 4.872124 GCTCCATCGATACATCATATGCAA 59.128 41.667 0.00 0.00 0.00 4.08
719 728 5.220548 GCTCCATCGATACATCATATGCAAC 60.221 44.000 0.00 0.00 0.00 4.17
720 729 5.792741 TCCATCGATACATCATATGCAACA 58.207 37.500 0.00 0.00 0.00 3.33
721 730 6.408869 TCCATCGATACATCATATGCAACAT 58.591 36.000 0.00 0.00 0.00 2.71
722 731 6.880529 TCCATCGATACATCATATGCAACATT 59.119 34.615 0.00 0.00 0.00 2.71
723 732 7.391275 TCCATCGATACATCATATGCAACATTT 59.609 33.333 0.00 0.00 0.00 2.32
724 733 8.024865 CCATCGATACATCATATGCAACATTTT 58.975 33.333 0.00 0.00 0.00 1.82
732 741 9.872721 ACATCATATGCAACATTTTAAATCACA 57.127 25.926 0.00 0.00 0.00 3.58
739 748 8.572828 TGCAACATTTTAAATCACAGTACAAG 57.427 30.769 0.00 0.00 0.00 3.16
740 749 8.194104 TGCAACATTTTAAATCACAGTACAAGT 58.806 29.630 0.00 0.00 0.00 3.16
956 1028 0.542333 TCTCTCCGTCTCTCCATCGT 59.458 55.000 0.00 0.00 0.00 3.73
1183 1255 4.671590 TCCTGCGGTCCCGTCAGA 62.672 66.667 22.83 9.62 41.99 3.27
1350 1563 1.191489 TGTGGAGTCATCGCTTCCCA 61.191 55.000 0.00 0.00 0.00 4.37
1358 1571 1.066858 TCATCGCTTCCCAGAAGACAC 60.067 52.381 8.50 0.00 0.00 3.67
1359 1572 0.250513 ATCGCTTCCCAGAAGACACC 59.749 55.000 8.50 0.00 0.00 4.16
1360 1573 1.118965 TCGCTTCCCAGAAGACACCA 61.119 55.000 8.50 0.00 0.00 4.17
1361 1574 0.250295 CGCTTCCCAGAAGACACCAA 60.250 55.000 8.50 0.00 0.00 3.67
1362 1575 1.239347 GCTTCCCAGAAGACACCAAC 58.761 55.000 8.50 0.00 0.00 3.77
1363 1576 1.512926 CTTCCCAGAAGACACCAACG 58.487 55.000 0.00 0.00 0.00 4.10
1364 1577 1.070134 CTTCCCAGAAGACACCAACGA 59.930 52.381 0.00 0.00 0.00 3.85
1365 1578 0.679505 TCCCAGAAGACACCAACGAG 59.320 55.000 0.00 0.00 0.00 4.18
1366 1579 0.320771 CCCAGAAGACACCAACGAGG 60.321 60.000 0.00 0.00 45.67 4.63
1367 1580 0.679505 CCAGAAGACACCAACGAGGA 59.320 55.000 5.70 0.00 41.22 3.71
1368 1581 1.070134 CCAGAAGACACCAACGAGGAA 59.930 52.381 5.70 0.00 41.22 3.36
1369 1582 2.135933 CAGAAGACACCAACGAGGAAC 58.864 52.381 5.70 0.00 41.22 3.62
1370 1583 1.760613 AGAAGACACCAACGAGGAACA 59.239 47.619 5.70 0.00 41.22 3.18
1371 1584 2.135933 GAAGACACCAACGAGGAACAG 58.864 52.381 5.70 0.00 41.22 3.16
1372 1585 1.120530 AGACACCAACGAGGAACAGT 58.879 50.000 5.70 0.00 41.22 3.55
1373 1586 1.485066 AGACACCAACGAGGAACAGTT 59.515 47.619 5.70 0.00 41.22 3.16
1374 1587 1.865340 GACACCAACGAGGAACAGTTC 59.135 52.381 4.52 4.52 41.22 3.01
1375 1588 1.485066 ACACCAACGAGGAACAGTTCT 59.515 47.619 13.13 0.00 41.22 3.01
1376 1589 2.093128 ACACCAACGAGGAACAGTTCTT 60.093 45.455 13.13 5.34 41.22 2.52
1377 1590 2.544267 CACCAACGAGGAACAGTTCTTC 59.456 50.000 14.15 14.15 41.22 2.87
1378 1591 2.169769 ACCAACGAGGAACAGTTCTTCA 59.830 45.455 21.71 0.00 41.22 3.02
1379 1592 2.544267 CCAACGAGGAACAGTTCTTCAC 59.456 50.000 21.71 3.17 41.22 3.18
1380 1593 2.528041 ACGAGGAACAGTTCTTCACC 57.472 50.000 21.71 3.37 35.70 4.02
1381 1594 1.070289 ACGAGGAACAGTTCTTCACCC 59.930 52.381 21.71 2.69 35.70 4.61
1382 1595 1.070134 CGAGGAACAGTTCTTCACCCA 59.930 52.381 21.71 0.00 35.70 4.51
1383 1596 2.772287 GAGGAACAGTTCTTCACCCAG 58.228 52.381 18.24 0.00 35.97 4.45
1384 1597 2.368875 GAGGAACAGTTCTTCACCCAGA 59.631 50.000 18.24 0.00 35.97 3.86
1385 1598 2.370189 AGGAACAGTTCTTCACCCAGAG 59.630 50.000 13.13 0.00 0.00 3.35
1386 1599 2.551071 GGAACAGTTCTTCACCCAGAGG 60.551 54.545 13.13 0.00 40.04 3.69
1387 1600 2.103153 ACAGTTCTTCACCCAGAGGA 57.897 50.000 0.00 0.00 36.73 3.71
1388 1601 1.974236 ACAGTTCTTCACCCAGAGGAG 59.026 52.381 0.00 0.00 33.49 3.69
1389 1602 1.277557 CAGTTCTTCACCCAGAGGAGG 59.722 57.143 0.00 0.00 33.49 4.30
1396 1609 2.364317 CCCAGAGGAGGGCGAAGA 60.364 66.667 0.00 0.00 43.10 2.87
1397 1610 2.430610 CCCAGAGGAGGGCGAAGAG 61.431 68.421 0.00 0.00 43.10 2.85
1398 1611 2.430610 CCAGAGGAGGGCGAAGAGG 61.431 68.421 0.00 0.00 0.00 3.69
1399 1612 1.380515 CAGAGGAGGGCGAAGAGGA 60.381 63.158 0.00 0.00 0.00 3.71
1400 1613 1.076339 AGAGGAGGGCGAAGAGGAG 60.076 63.158 0.00 0.00 0.00 3.69
1401 1614 1.076632 GAGGAGGGCGAAGAGGAGA 60.077 63.158 0.00 0.00 0.00 3.71
1402 1615 1.076339 AGGAGGGCGAAGAGGAGAG 60.076 63.158 0.00 0.00 0.00 3.20
1403 1616 1.076632 GGAGGGCGAAGAGGAGAGA 60.077 63.158 0.00 0.00 0.00 3.10
1404 1617 1.106944 GGAGGGCGAAGAGGAGAGAG 61.107 65.000 0.00 0.00 0.00 3.20
1405 1618 1.076339 AGGGCGAAGAGGAGAGAGG 60.076 63.158 0.00 0.00 0.00 3.69
1406 1619 1.076632 GGGCGAAGAGGAGAGAGGA 60.077 63.158 0.00 0.00 0.00 3.71
1407 1620 1.106944 GGGCGAAGAGGAGAGAGGAG 61.107 65.000 0.00 0.00 0.00 3.69
1408 1621 1.733526 GCGAAGAGGAGAGAGGAGC 59.266 63.158 0.00 0.00 0.00 4.70
1409 1622 2.021722 CGAAGAGGAGAGAGGAGCG 58.978 63.158 0.00 0.00 0.00 5.03
1410 1623 0.462937 CGAAGAGGAGAGAGGAGCGA 60.463 60.000 0.00 0.00 0.00 4.93
1411 1624 1.308998 GAAGAGGAGAGAGGAGCGAG 58.691 60.000 0.00 0.00 0.00 5.03
1412 1625 0.751643 AAGAGGAGAGAGGAGCGAGC 60.752 60.000 0.00 0.00 0.00 5.03
1413 1626 2.123897 AGGAGAGAGGAGCGAGCC 60.124 66.667 0.00 0.00 0.00 4.70
1414 1627 3.591835 GGAGAGAGGAGCGAGCCG 61.592 72.222 0.00 0.00 0.00 5.52
1415 1628 2.515057 GAGAGAGGAGCGAGCCGA 60.515 66.667 0.00 0.00 0.00 5.54
1416 1629 2.826738 AGAGAGGAGCGAGCCGAC 60.827 66.667 0.00 0.00 0.00 4.79
1417 1630 2.826738 GAGAGGAGCGAGCCGACT 60.827 66.667 0.00 0.00 0.00 4.18
1418 1631 1.524165 GAGAGGAGCGAGCCGACTA 60.524 63.158 0.00 0.00 0.00 2.59
1419 1632 0.887387 GAGAGGAGCGAGCCGACTAT 60.887 60.000 0.00 0.00 0.00 2.12
1420 1633 0.466555 AGAGGAGCGAGCCGACTATT 60.467 55.000 0.00 0.00 0.00 1.73
1421 1634 0.318275 GAGGAGCGAGCCGACTATTG 60.318 60.000 0.00 0.00 0.00 1.90
1422 1635 1.951631 GGAGCGAGCCGACTATTGC 60.952 63.158 0.00 0.00 0.00 3.56
1423 1636 1.226974 GAGCGAGCCGACTATTGCA 60.227 57.895 0.00 0.00 0.00 4.08
1424 1637 0.806102 GAGCGAGCCGACTATTGCAA 60.806 55.000 0.00 0.00 0.00 4.08
1425 1638 0.807667 AGCGAGCCGACTATTGCAAG 60.808 55.000 4.94 0.00 0.00 4.01
1426 1639 1.766143 GCGAGCCGACTATTGCAAGG 61.766 60.000 4.94 0.70 0.00 3.61
1427 1640 0.179111 CGAGCCGACTATTGCAAGGA 60.179 55.000 4.94 0.00 0.00 3.36
1428 1641 1.291132 GAGCCGACTATTGCAAGGAC 58.709 55.000 4.94 0.10 0.00 3.85
1429 1642 0.613260 AGCCGACTATTGCAAGGACA 59.387 50.000 4.94 0.00 0.00 4.02
1430 1643 1.003118 AGCCGACTATTGCAAGGACAA 59.997 47.619 4.94 0.00 0.00 3.18
1431 1644 1.398390 GCCGACTATTGCAAGGACAAG 59.602 52.381 4.94 0.00 31.96 3.16
1432 1645 1.398390 CCGACTATTGCAAGGACAAGC 59.602 52.381 4.94 0.00 31.96 4.01
1433 1646 1.061131 CGACTATTGCAAGGACAAGCG 59.939 52.381 4.94 0.00 31.96 4.68
1434 1647 2.346803 GACTATTGCAAGGACAAGCGA 58.653 47.619 4.94 0.00 31.96 4.93
1435 1648 2.742053 GACTATTGCAAGGACAAGCGAA 59.258 45.455 4.94 0.00 31.96 4.70
1436 1649 2.484264 ACTATTGCAAGGACAAGCGAAC 59.516 45.455 4.94 0.00 31.96 3.95
1437 1650 0.238289 ATTGCAAGGACAAGCGAACG 59.762 50.000 4.94 0.00 31.96 3.95
1438 1651 2.127232 GCAAGGACAAGCGAACGC 60.127 61.111 11.31 11.31 42.33 4.84
1460 1673 3.838271 GGCCGAGATGGACGAGCA 61.838 66.667 0.00 0.00 42.00 4.26
1461 1674 2.184322 GCCGAGATGGACGAGCAA 59.816 61.111 0.00 0.00 42.00 3.91
1462 1675 1.880340 GCCGAGATGGACGAGCAAG 60.880 63.158 0.00 0.00 42.00 4.01
1463 1676 1.880340 CCGAGATGGACGAGCAAGC 60.880 63.158 0.00 0.00 42.00 4.01
1464 1677 1.880340 CGAGATGGACGAGCAAGCC 60.880 63.158 0.00 0.00 0.00 4.35
1465 1678 1.219124 GAGATGGACGAGCAAGCCA 59.781 57.895 0.00 0.00 35.91 4.75
1466 1679 0.179062 GAGATGGACGAGCAAGCCAT 60.179 55.000 0.00 0.00 44.70 4.40
1467 1680 0.463295 AGATGGACGAGCAAGCCATG 60.463 55.000 0.00 0.00 42.22 3.66
1468 1681 1.442526 GATGGACGAGCAAGCCATGG 61.443 60.000 7.63 7.63 42.22 3.66
1469 1682 3.512516 GGACGAGCAAGCCATGGC 61.513 66.667 30.12 30.12 42.33 4.40
1480 1693 2.821366 CCATGGCGCTGTGGAGTC 60.821 66.667 21.87 0.00 37.72 3.36
1481 1694 2.046988 CATGGCGCTGTGGAGTCA 60.047 61.111 7.64 0.00 0.00 3.41
1482 1695 1.450848 CATGGCGCTGTGGAGTCAT 60.451 57.895 7.64 0.00 38.05 3.06
1483 1696 1.153289 ATGGCGCTGTGGAGTCATC 60.153 57.895 7.64 0.00 32.38 2.92
1484 1697 2.887568 GGCGCTGTGGAGTCATCG 60.888 66.667 7.64 0.00 0.00 3.84
1485 1698 3.558411 GCGCTGTGGAGTCATCGC 61.558 66.667 0.00 0.00 34.19 4.58
1486 1699 2.182791 CGCTGTGGAGTCATCGCT 59.817 61.111 0.00 0.00 0.00 4.93
1487 1700 1.446792 CGCTGTGGAGTCATCGCTT 60.447 57.895 0.00 0.00 0.00 4.68
1488 1701 1.416813 CGCTGTGGAGTCATCGCTTC 61.417 60.000 0.00 0.00 0.00 3.86
1489 1702 1.086634 GCTGTGGAGTCATCGCTTCC 61.087 60.000 0.00 0.00 0.00 3.46
1490 1703 0.460987 CTGTGGAGTCATCGCTTCCC 60.461 60.000 0.00 0.00 0.00 3.97
1491 1704 1.519455 GTGGAGTCATCGCTTCCCG 60.519 63.158 0.00 0.00 38.61 5.14
1492 1705 2.107141 GGAGTCATCGCTTCCCGG 59.893 66.667 0.00 0.00 37.59 5.73
1493 1706 2.423898 GGAGTCATCGCTTCCCGGA 61.424 63.158 0.73 0.00 37.59 5.14
1494 1707 1.515954 GAGTCATCGCTTCCCGGAA 59.484 57.895 0.73 0.00 37.59 4.30
1495 1708 0.528684 GAGTCATCGCTTCCCGGAAG 60.529 60.000 21.27 21.27 42.03 3.46
1496 1709 0.970937 AGTCATCGCTTCCCGGAAGA 60.971 55.000 28.35 11.09 41.71 2.87
1497 1710 0.806492 GTCATCGCTTCCCGGAAGAC 60.806 60.000 28.35 18.26 41.71 3.01
1498 1711 1.218047 CATCGCTTCCCGGAAGACA 59.782 57.895 28.35 14.77 41.71 3.41
1561 1822 0.466555 AGAGGAGCGAGCCGACTATT 60.467 55.000 0.00 0.00 0.00 1.73
1693 1954 1.118838 GGAGGAGGACATCACTGAGG 58.881 60.000 0.00 0.00 0.00 3.86
1694 1955 1.621072 GGAGGAGGACATCACTGAGGT 60.621 57.143 0.00 0.00 0.00 3.85
1788 2078 8.523915 TCTACGAAACCAAATATGTAGTAGGA 57.476 34.615 0.00 0.00 33.00 2.94
1789 2079 8.627403 TCTACGAAACCAAATATGTAGTAGGAG 58.373 37.037 0.00 0.00 33.00 3.69
1790 2080 7.414222 ACGAAACCAAATATGTAGTAGGAGA 57.586 36.000 0.00 0.00 0.00 3.71
1791 2081 7.844009 ACGAAACCAAATATGTAGTAGGAGAA 58.156 34.615 0.00 0.00 0.00 2.87
1792 2082 7.763071 ACGAAACCAAATATGTAGTAGGAGAAC 59.237 37.037 0.00 0.00 0.00 3.01
1793 2083 7.980099 CGAAACCAAATATGTAGTAGGAGAACT 59.020 37.037 0.00 0.00 0.00 3.01
1797 2087 9.884814 ACCAAATATGTAGTAGGAGAACTATCT 57.115 33.333 0.00 0.00 39.10 1.98
1804 2094 8.430801 TGTAGTAGGAGAACTATCTACGAAAC 57.569 38.462 0.00 0.00 41.83 2.78
1805 2095 6.940831 AGTAGGAGAACTATCTACGAAACC 57.059 41.667 0.00 0.00 41.83 3.27
1806 2096 6.421485 AGTAGGAGAACTATCTACGAAACCA 58.579 40.000 0.00 0.00 41.83 3.67
1807 2097 6.888632 AGTAGGAGAACTATCTACGAAACCAA 59.111 38.462 0.00 0.00 41.83 3.67
1808 2098 6.600882 AGGAGAACTATCTACGAAACCAAA 57.399 37.500 0.00 0.00 41.83 3.28
1809 2099 7.184067 AGGAGAACTATCTACGAAACCAAAT 57.816 36.000 0.00 0.00 41.83 2.32
1810 2100 8.302515 AGGAGAACTATCTACGAAACCAAATA 57.697 34.615 0.00 0.00 41.83 1.40
1811 2101 8.925338 AGGAGAACTATCTACGAAACCAAATAT 58.075 33.333 0.00 0.00 41.83 1.28
1812 2102 8.979574 GGAGAACTATCTACGAAACCAAATATG 58.020 37.037 0.00 0.00 35.54 1.78
1813 2103 9.530633 GAGAACTATCTACGAAACCAAATATGT 57.469 33.333 0.00 0.00 35.54 2.29
1984 2274 4.389576 GTTGCGCGGCTGTTGGAG 62.390 66.667 8.83 0.00 0.00 3.86
1985 2275 4.617520 TTGCGCGGCTGTTGGAGA 62.618 61.111 8.83 0.00 0.00 3.71
1986 2276 3.899981 TTGCGCGGCTGTTGGAGAT 62.900 57.895 8.83 0.00 0.00 2.75
1987 2277 3.869272 GCGCGGCTGTTGGAGATG 61.869 66.667 8.83 0.00 0.00 2.90
1988 2278 3.869272 CGCGGCTGTTGGAGATGC 61.869 66.667 0.00 0.00 0.00 3.91
1989 2279 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
1990 2280 2.758089 GCGGCTGTTGGAGATGCTG 61.758 63.158 0.00 0.00 35.15 4.41
1991 2281 1.376424 CGGCTGTTGGAGATGCTGT 60.376 57.895 0.00 0.00 0.00 4.40
1992 2282 0.108186 CGGCTGTTGGAGATGCTGTA 60.108 55.000 0.00 0.00 0.00 2.74
1993 2283 1.675714 CGGCTGTTGGAGATGCTGTAA 60.676 52.381 0.00 0.00 0.00 2.41
1994 2284 2.012673 GGCTGTTGGAGATGCTGTAAG 58.987 52.381 0.00 0.00 0.00 2.34
1995 2285 2.355108 GGCTGTTGGAGATGCTGTAAGA 60.355 50.000 0.00 0.00 34.07 2.10
1996 2286 2.935201 GCTGTTGGAGATGCTGTAAGAG 59.065 50.000 0.00 0.00 34.07 2.85
1997 2287 3.368843 GCTGTTGGAGATGCTGTAAGAGA 60.369 47.826 0.00 0.00 34.07 3.10
1998 2288 4.180057 CTGTTGGAGATGCTGTAAGAGAC 58.820 47.826 0.00 0.00 34.07 3.36
1999 2289 3.578282 TGTTGGAGATGCTGTAAGAGACA 59.422 43.478 0.00 0.00 34.07 3.41
2011 2301 4.682787 TGTAAGAGACAGATGCGGTATTG 58.317 43.478 0.00 0.00 32.86 1.90
2012 2302 2.898729 AGAGACAGATGCGGTATTGG 57.101 50.000 0.00 0.00 0.00 3.16
2013 2303 2.388735 AGAGACAGATGCGGTATTGGA 58.611 47.619 0.00 0.00 0.00 3.53
2014 2304 2.968574 AGAGACAGATGCGGTATTGGAT 59.031 45.455 0.00 0.00 0.00 3.41
2015 2305 3.006323 AGAGACAGATGCGGTATTGGATC 59.994 47.826 0.00 0.00 37.00 3.36
2016 2306 2.061773 GACAGATGCGGTATTGGATCG 58.938 52.381 0.00 0.00 41.12 3.69
2017 2307 1.686587 ACAGATGCGGTATTGGATCGA 59.313 47.619 0.00 0.00 41.12 3.59
2018 2308 2.288457 ACAGATGCGGTATTGGATCGAG 60.288 50.000 0.00 0.00 41.12 4.04
2019 2309 2.029918 CAGATGCGGTATTGGATCGAGA 60.030 50.000 0.00 0.00 41.12 4.04
2020 2310 2.029828 AGATGCGGTATTGGATCGAGAC 60.030 50.000 0.00 0.00 41.12 3.36
2021 2311 0.030235 TGCGGTATTGGATCGAGACG 59.970 55.000 0.00 0.00 0.00 4.18
2022 2312 0.309922 GCGGTATTGGATCGAGACGA 59.690 55.000 0.00 0.00 41.13 4.20
2023 2313 1.925068 GCGGTATTGGATCGAGACGAC 60.925 57.143 0.00 0.00 39.18 4.34
2024 2314 1.602851 CGGTATTGGATCGAGACGACT 59.397 52.381 0.00 0.00 39.18 4.18
2025 2315 2.349627 CGGTATTGGATCGAGACGACTC 60.350 54.545 4.73 4.73 39.18 3.36
2026 2316 2.879646 GGTATTGGATCGAGACGACTCT 59.120 50.000 12.88 0.00 39.18 3.24
2027 2317 3.315749 GGTATTGGATCGAGACGACTCTT 59.684 47.826 12.88 0.49 39.18 2.85
2028 2318 2.921634 TTGGATCGAGACGACTCTTG 57.078 50.000 12.88 0.00 39.18 3.02
2052 2342 7.013220 TGCATCACTAGAAGGATCCTAGTTAT 58.987 38.462 16.55 9.23 42.90 1.89
2060 2350 7.805083 AGAAGGATCCTAGTTATGCATATGT 57.195 36.000 16.55 0.33 0.00 2.29
2094 2385 3.239449 TCCTCTTAGTTGTTGCTGGAGA 58.761 45.455 0.00 0.00 0.00 3.71
2095 2386 3.646162 TCCTCTTAGTTGTTGCTGGAGAA 59.354 43.478 0.00 0.00 0.00 2.87
2096 2387 4.102524 TCCTCTTAGTTGTTGCTGGAGAAA 59.897 41.667 0.00 0.00 0.00 2.52
2097 2388 4.821805 CCTCTTAGTTGTTGCTGGAGAAAA 59.178 41.667 0.00 0.00 0.00 2.29
2140 2431 3.935828 GCTCTTCACTGGTCTACCATTTC 59.064 47.826 1.51 0.00 46.46 2.17
2141 2432 4.323104 GCTCTTCACTGGTCTACCATTTCT 60.323 45.833 1.51 0.00 46.46 2.52
2205 2496 7.321153 TCCCTTTCACTTTAGATAAGAAGTCG 58.679 38.462 0.00 0.00 34.04 4.18
2247 2538 5.062308 GTCATTCTAGGACGCTTTGTTAGTG 59.938 44.000 0.00 0.00 40.32 2.74
2259 2550 5.288232 CGCTTTGTTAGTGATCTCTCTTCTG 59.712 44.000 0.00 0.00 36.43 3.02
2273 2564 4.248859 TCTCTTCTGGCAAATTCTTCTCG 58.751 43.478 0.00 0.00 0.00 4.04
2283 2574 2.724977 ATTCTTCTCGTGCAGTCGAA 57.275 45.000 0.87 0.00 39.34 3.71
2288 2579 2.327081 TCTCGTGCAGTCGAACTAAC 57.673 50.000 0.87 0.00 39.34 2.34
2294 2585 2.536803 GTGCAGTCGAACTAACGAAACA 59.463 45.455 0.00 0.00 43.75 2.83
2299 2590 4.501559 CAGTCGAACTAACGAAACAAGTCA 59.498 41.667 0.00 0.00 43.75 3.41
2346 2637 9.157104 CCTACCATCTTTCTTTAGTTTTCTCTC 57.843 37.037 0.00 0.00 0.00 3.20
2355 2646 6.304624 TCTTTAGTTTTCTCTCCCCCTTTTC 58.695 40.000 0.00 0.00 0.00 2.29
2413 2704 5.353123 TGTTGTGAACTCTTTTCTACACCAC 59.647 40.000 0.00 0.00 0.00 4.16
2421 2712 7.745620 ACTCTTTTCTACACCACTTATTTGG 57.254 36.000 0.00 0.00 43.04 3.28
2458 2749 5.493133 ACGCAAAAGAGTGATGTTGTTTA 57.507 34.783 0.00 0.00 0.00 2.01
2606 2922 1.765314 GATCTGGCCTCACCACATAGT 59.235 52.381 3.32 0.00 46.36 2.12
2608 2924 1.555075 TCTGGCCTCACCACATAGTTC 59.445 52.381 3.32 0.00 46.36 3.01
2610 2926 1.090052 GGCCTCACCACATAGTTCGC 61.090 60.000 0.00 0.00 38.86 4.70
2619 2935 0.595053 ACATAGTTCGCGCAGATCGG 60.595 55.000 8.75 3.79 38.94 4.18
2656 2972 9.465199 TCAATTCATGACAGAATTTCAAGGATA 57.535 29.630 0.00 0.00 43.67 2.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
39 40 9.016438 TGTGGAAAGGGTAATAAACAGAATAAC 57.984 33.333 0.00 0.00 0.00 1.89
49 50 8.903059 AATGGTTAATGTGGAAAGGGTAATAA 57.097 30.769 0.00 0.00 0.00 1.40
71 72 6.146021 GGGTGAACTCAAATTGCAAGTAAATG 59.854 38.462 4.94 0.00 0.00 2.32
154 155 1.689233 TGATCGGACCCTTCCCCAG 60.689 63.158 0.00 0.00 38.99 4.45
159 160 1.278127 TCCAAAGTGATCGGACCCTTC 59.722 52.381 0.00 0.00 0.00 3.46
317 318 1.877443 AGTTGTCGGCGCTTTGTATTT 59.123 42.857 7.64 0.00 0.00 1.40
364 373 8.691797 GCTCCATTGGGAAATAAACTGTTATTA 58.308 33.333 2.09 0.00 44.38 0.98
365 374 7.180051 TGCTCCATTGGGAAATAAACTGTTATT 59.820 33.333 2.09 0.00 44.38 1.40
366 375 6.667414 TGCTCCATTGGGAAATAAACTGTTAT 59.333 34.615 2.09 0.00 44.38 1.89
367 376 6.013379 TGCTCCATTGGGAAATAAACTGTTA 58.987 36.000 2.09 0.00 44.38 2.41
368 377 4.837860 TGCTCCATTGGGAAATAAACTGTT 59.162 37.500 2.09 0.00 44.38 3.16
369 378 4.415596 TGCTCCATTGGGAAATAAACTGT 58.584 39.130 2.09 0.00 44.38 3.55
370 379 5.404466 TTGCTCCATTGGGAAATAAACTG 57.596 39.130 2.09 0.00 44.38 3.16
371 380 6.183361 TGTTTTGCTCCATTGGGAAATAAACT 60.183 34.615 2.09 0.00 44.38 2.66
372 381 5.994668 TGTTTTGCTCCATTGGGAAATAAAC 59.005 36.000 2.09 8.21 44.38 2.01
373 382 6.179906 TGTTTTGCTCCATTGGGAAATAAA 57.820 33.333 2.09 0.00 44.38 1.40
374 383 5.815233 TGTTTTGCTCCATTGGGAAATAA 57.185 34.783 2.09 0.00 44.38 1.40
375 384 5.512232 GGTTGTTTTGCTCCATTGGGAAATA 60.512 40.000 2.09 0.00 44.38 1.40
376 385 4.388485 GTTGTTTTGCTCCATTGGGAAAT 58.612 39.130 2.09 0.00 44.38 2.17
377 386 3.432890 GGTTGTTTTGCTCCATTGGGAAA 60.433 43.478 2.09 0.00 44.38 3.13
378 387 2.103941 GGTTGTTTTGCTCCATTGGGAA 59.896 45.455 2.09 0.00 44.38 3.97
379 388 1.691434 GGTTGTTTTGCTCCATTGGGA 59.309 47.619 2.09 0.00 42.29 4.37
380 389 1.693606 AGGTTGTTTTGCTCCATTGGG 59.306 47.619 2.09 0.00 0.00 4.12
381 390 4.806640 ATAGGTTGTTTTGCTCCATTGG 57.193 40.909 0.00 0.00 0.00 3.16
382 391 5.807011 GCTAATAGGTTGTTTTGCTCCATTG 59.193 40.000 0.00 0.00 0.00 2.82
383 392 5.480073 TGCTAATAGGTTGTTTTGCTCCATT 59.520 36.000 0.00 0.00 0.00 3.16
384 393 5.016173 TGCTAATAGGTTGTTTTGCTCCAT 58.984 37.500 0.00 0.00 0.00 3.41
385 394 4.402829 TGCTAATAGGTTGTTTTGCTCCA 58.597 39.130 0.00 0.00 0.00 3.86
386 395 5.048013 ACTTGCTAATAGGTTGTTTTGCTCC 60.048 40.000 0.00 0.00 0.00 4.70
387 396 6.013842 ACTTGCTAATAGGTTGTTTTGCTC 57.986 37.500 0.00 0.00 0.00 4.26
388 397 5.048013 GGACTTGCTAATAGGTTGTTTTGCT 60.048 40.000 0.00 0.00 0.00 3.91
389 398 5.161358 GGACTTGCTAATAGGTTGTTTTGC 58.839 41.667 0.00 0.00 0.00 3.68
390 399 6.325919 TGGACTTGCTAATAGGTTGTTTTG 57.674 37.500 0.00 0.00 0.00 2.44
391 400 7.539034 AATGGACTTGCTAATAGGTTGTTTT 57.461 32.000 0.00 0.00 0.00 2.43
392 401 7.451566 AGAAATGGACTTGCTAATAGGTTGTTT 59.548 33.333 0.00 0.00 0.00 2.83
393 402 6.948309 AGAAATGGACTTGCTAATAGGTTGTT 59.052 34.615 0.00 0.00 0.00 2.83
394 403 6.485171 AGAAATGGACTTGCTAATAGGTTGT 58.515 36.000 0.00 0.00 0.00 3.32
395 404 6.825721 AGAGAAATGGACTTGCTAATAGGTTG 59.174 38.462 0.00 0.00 0.00 3.77
396 405 6.963322 AGAGAAATGGACTTGCTAATAGGTT 58.037 36.000 0.00 0.00 0.00 3.50
397 406 6.567602 AGAGAAATGGACTTGCTAATAGGT 57.432 37.500 0.00 0.00 0.00 3.08
398 407 8.207545 AGTTAGAGAAATGGACTTGCTAATAGG 58.792 37.037 0.00 0.00 0.00 2.57
399 408 9.255304 GAGTTAGAGAAATGGACTTGCTAATAG 57.745 37.037 0.00 0.00 0.00 1.73
400 409 8.982723 AGAGTTAGAGAAATGGACTTGCTAATA 58.017 33.333 0.00 0.00 0.00 0.98
401 410 7.856415 AGAGTTAGAGAAATGGACTTGCTAAT 58.144 34.615 0.00 0.00 0.00 1.73
402 411 7.246171 AGAGTTAGAGAAATGGACTTGCTAA 57.754 36.000 0.00 0.00 0.00 3.09
403 412 6.859112 AGAGTTAGAGAAATGGACTTGCTA 57.141 37.500 0.00 0.00 0.00 3.49
404 413 5.753721 AGAGTTAGAGAAATGGACTTGCT 57.246 39.130 0.00 0.00 0.00 3.91
405 414 9.255304 CTAATAGAGTTAGAGAAATGGACTTGC 57.745 37.037 0.00 0.00 0.00 4.01
406 415 9.255304 GCTAATAGAGTTAGAGAAATGGACTTG 57.745 37.037 0.00 0.00 0.00 3.16
407 416 8.982723 TGCTAATAGAGTTAGAGAAATGGACTT 58.017 33.333 0.00 0.00 0.00 3.01
408 417 8.540507 TGCTAATAGAGTTAGAGAAATGGACT 57.459 34.615 0.00 0.00 0.00 3.85
409 418 9.255304 CTTGCTAATAGAGTTAGAGAAATGGAC 57.745 37.037 0.00 0.00 0.00 4.02
410 419 8.982723 ACTTGCTAATAGAGTTAGAGAAATGGA 58.017 33.333 0.00 0.00 0.00 3.41
411 420 9.606631 AACTTGCTAATAGAGTTAGAGAAATGG 57.393 33.333 0.00 0.00 32.22 3.16
422 431 9.726438 ACAACTAAATGAACTTGCTAATAGAGT 57.274 29.630 0.00 0.00 0.00 3.24
456 465 9.793259 ACTGACAATTAAATAGACTTCCTTCAA 57.207 29.630 0.00 0.00 0.00 2.69
519 528 9.336171 ACCTAACAAAAATAACAAATGCACATT 57.664 25.926 0.00 0.00 0.00 2.71
520 529 8.900983 ACCTAACAAAAATAACAAATGCACAT 57.099 26.923 0.00 0.00 0.00 3.21
521 530 8.607459 CAACCTAACAAAAATAACAAATGCACA 58.393 29.630 0.00 0.00 0.00 4.57
522 531 7.585936 GCAACCTAACAAAAATAACAAATGCAC 59.414 33.333 0.00 0.00 0.00 4.57
523 532 7.280876 TGCAACCTAACAAAAATAACAAATGCA 59.719 29.630 0.00 0.00 34.55 3.96
524 533 7.585936 GTGCAACCTAACAAAAATAACAAATGC 59.414 33.333 0.00 0.00 0.00 3.56
525 534 8.607459 TGTGCAACCTAACAAAAATAACAAATG 58.393 29.630 0.00 0.00 34.36 2.32
526 535 8.723942 TGTGCAACCTAACAAAAATAACAAAT 57.276 26.923 0.00 0.00 34.36 2.32
527 536 8.607459 CATGTGCAACCTAACAAAAATAACAAA 58.393 29.630 0.00 0.00 34.36 2.83
528 537 7.766278 ACATGTGCAACCTAACAAAAATAACAA 59.234 29.630 0.00 0.00 34.36 2.83
529 538 7.223582 CACATGTGCAACCTAACAAAAATAACA 59.776 33.333 13.94 0.00 34.36 2.41
530 539 7.223777 ACACATGTGCAACCTAACAAAAATAAC 59.776 33.333 25.68 0.00 34.36 1.89
531 540 7.268586 ACACATGTGCAACCTAACAAAAATAA 58.731 30.769 25.68 0.00 34.36 1.40
532 541 6.810911 ACACATGTGCAACCTAACAAAAATA 58.189 32.000 25.68 0.00 34.36 1.40
533 542 5.669477 ACACATGTGCAACCTAACAAAAAT 58.331 33.333 25.68 0.00 34.36 1.82
534 543 5.078411 ACACATGTGCAACCTAACAAAAA 57.922 34.783 25.68 0.00 34.36 1.94
535 544 4.727507 ACACATGTGCAACCTAACAAAA 57.272 36.364 25.68 0.00 34.36 2.44
536 545 5.278709 CCATACACATGTGCAACCTAACAAA 60.279 40.000 25.68 0.00 34.36 2.83
537 546 4.217334 CCATACACATGTGCAACCTAACAA 59.783 41.667 25.68 0.00 34.36 2.83
538 547 3.755905 CCATACACATGTGCAACCTAACA 59.244 43.478 25.68 0.51 34.36 2.41
539 548 4.006989 TCCATACACATGTGCAACCTAAC 58.993 43.478 25.68 0.00 34.36 2.34
540 549 4.260985 CTCCATACACATGTGCAACCTAA 58.739 43.478 25.68 4.93 34.36 2.69
541 550 3.872696 CTCCATACACATGTGCAACCTA 58.127 45.455 25.68 10.49 34.36 3.08
542 551 2.715046 CTCCATACACATGTGCAACCT 58.285 47.619 25.68 8.44 34.36 3.50
543 552 1.133025 GCTCCATACACATGTGCAACC 59.867 52.381 25.68 4.40 34.36 3.77
544 553 1.811965 TGCTCCATACACATGTGCAAC 59.188 47.619 25.68 8.89 37.03 4.17
545 554 2.197283 TGCTCCATACACATGTGCAA 57.803 45.000 25.68 14.52 37.03 4.08
546 555 2.197283 TTGCTCCATACACATGTGCA 57.803 45.000 25.68 14.10 37.69 4.57
547 556 3.129113 TCAATTGCTCCATACACATGTGC 59.871 43.478 25.68 10.36 33.18 4.57
548 557 4.968812 TCAATTGCTCCATACACATGTG 57.031 40.909 24.25 24.25 0.00 3.21
549 558 7.828508 ATAATCAATTGCTCCATACACATGT 57.171 32.000 0.00 0.00 0.00 3.21
569 578 9.515020 CGTTGCTGTGGTTCATTTTATAATAAT 57.485 29.630 0.00 0.00 0.00 1.28
570 579 7.486551 GCGTTGCTGTGGTTCATTTTATAATAA 59.513 33.333 0.00 0.00 0.00 1.40
571 580 6.970043 GCGTTGCTGTGGTTCATTTTATAATA 59.030 34.615 0.00 0.00 0.00 0.98
572 581 5.804979 GCGTTGCTGTGGTTCATTTTATAAT 59.195 36.000 0.00 0.00 0.00 1.28
573 582 5.157781 GCGTTGCTGTGGTTCATTTTATAA 58.842 37.500 0.00 0.00 0.00 0.98
574 583 4.670478 CGCGTTGCTGTGGTTCATTTTATA 60.670 41.667 0.00 0.00 0.00 0.98
575 584 3.574614 GCGTTGCTGTGGTTCATTTTAT 58.425 40.909 0.00 0.00 0.00 1.40
576 585 2.603412 CGCGTTGCTGTGGTTCATTTTA 60.603 45.455 0.00 0.00 0.00 1.52
577 586 1.851658 GCGTTGCTGTGGTTCATTTT 58.148 45.000 0.00 0.00 0.00 1.82
578 587 0.317770 CGCGTTGCTGTGGTTCATTT 60.318 50.000 0.00 0.00 0.00 2.32
579 588 1.282570 CGCGTTGCTGTGGTTCATT 59.717 52.632 0.00 0.00 0.00 2.57
580 589 1.891919 ACGCGTTGCTGTGGTTCAT 60.892 52.632 5.58 0.00 0.00 2.57
581 590 2.512745 ACGCGTTGCTGTGGTTCA 60.513 55.556 5.58 0.00 0.00 3.18
582 591 2.052237 CACGCGTTGCTGTGGTTC 60.052 61.111 10.22 0.00 32.64 3.62
583 592 2.512745 TCACGCGTTGCTGTGGTT 60.513 55.556 10.22 0.00 35.24 3.67
584 593 2.715532 ATCTCACGCGTTGCTGTGGT 62.716 55.000 10.22 0.00 35.24 4.16
585 594 0.735978 TATCTCACGCGTTGCTGTGG 60.736 55.000 10.22 0.00 35.24 4.17
586 595 1.256376 GATATCTCACGCGTTGCTGTG 59.744 52.381 10.22 0.00 35.60 3.66
587 596 1.135112 TGATATCTCACGCGTTGCTGT 60.135 47.619 10.22 0.00 0.00 4.40
588 597 1.559831 TGATATCTCACGCGTTGCTG 58.440 50.000 10.22 0.00 0.00 4.41
589 598 2.035193 AGATGATATCTCACGCGTTGCT 59.965 45.455 10.22 0.00 33.42 3.91
590 599 2.398498 AGATGATATCTCACGCGTTGC 58.602 47.619 10.22 0.00 33.42 4.17
591 600 4.788690 ACTAGATGATATCTCACGCGTTG 58.211 43.478 10.22 5.73 40.76 4.10
592 601 6.745159 ATACTAGATGATATCTCACGCGTT 57.255 37.500 10.22 0.00 40.76 4.84
593 602 6.745159 AATACTAGATGATATCTCACGCGT 57.255 37.500 5.58 5.58 40.76 6.01
594 603 9.163903 CATTAATACTAGATGATATCTCACGCG 57.836 37.037 3.53 3.53 40.76 6.01
621 630 9.569122 ACCATAGAACAACTGTACAGTAATTTT 57.431 29.630 28.13 20.42 41.58 1.82
622 631 9.569122 AACCATAGAACAACTGTACAGTAATTT 57.431 29.630 28.13 19.87 41.58 1.82
623 632 9.216117 GAACCATAGAACAACTGTACAGTAATT 57.784 33.333 28.13 23.19 41.58 1.40
624 633 8.372459 TGAACCATAGAACAACTGTACAGTAAT 58.628 33.333 28.13 16.48 41.58 1.89
625 634 7.728148 TGAACCATAGAACAACTGTACAGTAA 58.272 34.615 28.13 10.53 41.58 2.24
626 635 7.231925 TCTGAACCATAGAACAACTGTACAGTA 59.768 37.037 28.13 12.45 41.58 2.74
627 636 6.041637 TCTGAACCATAGAACAACTGTACAGT 59.958 38.462 22.95 22.95 44.94 3.55
628 637 6.455647 TCTGAACCATAGAACAACTGTACAG 58.544 40.000 21.44 21.44 0.00 2.74
629 638 6.413783 TCTGAACCATAGAACAACTGTACA 57.586 37.500 0.00 0.00 0.00 2.90
630 639 5.348997 GCTCTGAACCATAGAACAACTGTAC 59.651 44.000 0.00 0.00 0.00 2.90
631 640 5.011635 TGCTCTGAACCATAGAACAACTGTA 59.988 40.000 0.00 0.00 0.00 2.74
632 641 4.202357 TGCTCTGAACCATAGAACAACTGT 60.202 41.667 0.00 0.00 0.00 3.55
633 642 4.318332 TGCTCTGAACCATAGAACAACTG 58.682 43.478 0.00 0.00 0.00 3.16
634 643 4.623932 TGCTCTGAACCATAGAACAACT 57.376 40.909 0.00 0.00 0.00 3.16
635 644 4.437930 GCATGCTCTGAACCATAGAACAAC 60.438 45.833 11.37 0.00 0.00 3.32
636 645 3.691118 GCATGCTCTGAACCATAGAACAA 59.309 43.478 11.37 0.00 0.00 2.83
637 646 3.273434 GCATGCTCTGAACCATAGAACA 58.727 45.455 11.37 0.00 0.00 3.18
638 647 3.273434 TGCATGCTCTGAACCATAGAAC 58.727 45.455 20.33 0.00 0.00 3.01
639 648 3.632643 TGCATGCTCTGAACCATAGAA 57.367 42.857 20.33 0.00 0.00 2.10
640 649 3.632643 TTGCATGCTCTGAACCATAGA 57.367 42.857 20.33 0.00 0.00 1.98
641 650 4.707030 TTTTGCATGCTCTGAACCATAG 57.293 40.909 20.33 0.00 0.00 2.23
660 669 8.349568 ACCAAAGAACAGAAGAACTAGTTTTT 57.650 30.769 10.02 10.52 0.00 1.94
661 670 7.939784 ACCAAAGAACAGAAGAACTAGTTTT 57.060 32.000 10.02 0.23 0.00 2.43
662 671 7.939784 AACCAAAGAACAGAAGAACTAGTTT 57.060 32.000 10.02 0.00 0.00 2.66
663 672 7.939784 AAACCAAAGAACAGAAGAACTAGTT 57.060 32.000 8.13 8.13 0.00 2.24
664 673 7.067129 GGAAAACCAAAGAACAGAAGAACTAGT 59.933 37.037 0.00 0.00 0.00 2.57
665 674 7.067008 TGGAAAACCAAAGAACAGAAGAACTAG 59.933 37.037 0.00 0.00 0.00 2.57
666 675 6.887545 TGGAAAACCAAAGAACAGAAGAACTA 59.112 34.615 0.00 0.00 0.00 2.24
667 676 5.714806 TGGAAAACCAAAGAACAGAAGAACT 59.285 36.000 0.00 0.00 0.00 3.01
668 677 5.961272 TGGAAAACCAAAGAACAGAAGAAC 58.039 37.500 0.00 0.00 0.00 3.01
669 678 6.790232 ATGGAAAACCAAAGAACAGAAGAA 57.210 33.333 0.00 0.00 0.00 2.52
670 679 6.790232 AATGGAAAACCAAAGAACAGAAGA 57.210 33.333 0.00 0.00 0.00 2.87
671 680 6.642540 GCTAATGGAAAACCAAAGAACAGAAG 59.357 38.462 0.00 0.00 0.00 2.85
672 681 6.323739 AGCTAATGGAAAACCAAAGAACAGAA 59.676 34.615 0.00 0.00 0.00 3.02
673 682 5.833131 AGCTAATGGAAAACCAAAGAACAGA 59.167 36.000 0.00 0.00 0.00 3.41
674 683 6.089249 AGCTAATGGAAAACCAAAGAACAG 57.911 37.500 0.00 0.00 0.00 3.16
675 684 5.010617 GGAGCTAATGGAAAACCAAAGAACA 59.989 40.000 0.00 0.00 0.00 3.18
676 685 5.010617 TGGAGCTAATGGAAAACCAAAGAAC 59.989 40.000 0.00 0.00 0.00 3.01
677 686 5.144100 TGGAGCTAATGGAAAACCAAAGAA 58.856 37.500 0.00 0.00 0.00 2.52
678 687 4.735369 TGGAGCTAATGGAAAACCAAAGA 58.265 39.130 0.00 0.00 0.00 2.52
679 688 5.654497 GATGGAGCTAATGGAAAACCAAAG 58.346 41.667 0.00 0.00 0.00 2.77
680 689 4.157656 CGATGGAGCTAATGGAAAACCAAA 59.842 41.667 0.00 0.00 0.00 3.28
681 690 3.694072 CGATGGAGCTAATGGAAAACCAA 59.306 43.478 0.00 0.00 0.00 3.67
682 691 3.054728 TCGATGGAGCTAATGGAAAACCA 60.055 43.478 0.00 0.00 0.00 3.67
683 692 3.541632 TCGATGGAGCTAATGGAAAACC 58.458 45.455 0.00 0.00 0.00 3.27
684 693 5.758296 TGTATCGATGGAGCTAATGGAAAAC 59.242 40.000 8.54 0.00 0.00 2.43
685 694 5.924356 TGTATCGATGGAGCTAATGGAAAA 58.076 37.500 8.54 0.00 0.00 2.29
686 695 5.545063 TGTATCGATGGAGCTAATGGAAA 57.455 39.130 8.54 0.00 0.00 3.13
687 696 5.245977 TGATGTATCGATGGAGCTAATGGAA 59.754 40.000 8.54 0.00 0.00 3.53
688 697 4.772100 TGATGTATCGATGGAGCTAATGGA 59.228 41.667 8.54 0.00 0.00 3.41
689 698 5.077134 TGATGTATCGATGGAGCTAATGG 57.923 43.478 8.54 0.00 0.00 3.16
690 699 7.095732 GCATATGATGTATCGATGGAGCTAATG 60.096 40.741 8.54 6.00 0.00 1.90
691 700 6.927936 GCATATGATGTATCGATGGAGCTAAT 59.072 38.462 8.54 0.00 0.00 1.73
692 701 6.127366 TGCATATGATGTATCGATGGAGCTAA 60.127 38.462 8.54 0.00 0.00 3.09
693 702 5.360714 TGCATATGATGTATCGATGGAGCTA 59.639 40.000 8.54 0.00 0.00 3.32
694 703 4.161001 TGCATATGATGTATCGATGGAGCT 59.839 41.667 8.54 0.00 0.00 4.09
695 704 4.436332 TGCATATGATGTATCGATGGAGC 58.564 43.478 8.54 0.00 0.00 4.70
696 705 5.870978 TGTTGCATATGATGTATCGATGGAG 59.129 40.000 8.54 0.00 29.52 3.86
697 706 5.792741 TGTTGCATATGATGTATCGATGGA 58.207 37.500 8.54 0.00 0.00 3.41
698 707 6.673154 ATGTTGCATATGATGTATCGATGG 57.327 37.500 8.54 0.00 0.00 3.51
699 708 8.959734 AAAATGTTGCATATGATGTATCGATG 57.040 30.769 8.54 0.00 0.00 3.84
706 715 9.872721 TGTGATTTAAAATGTTGCATATGATGT 57.127 25.926 6.97 0.00 0.00 3.06
713 722 9.195411 CTTGTACTGTGATTTAAAATGTTGCAT 57.805 29.630 0.00 0.00 0.00 3.96
714 723 8.194104 ACTTGTACTGTGATTTAAAATGTTGCA 58.806 29.630 0.00 0.00 0.00 4.08
715 724 8.574196 ACTTGTACTGTGATTTAAAATGTTGC 57.426 30.769 0.00 0.00 0.00 4.17
722 731 9.332502 TGCTCTTAACTTGTACTGTGATTTAAA 57.667 29.630 0.00 0.00 0.00 1.52
723 732 8.896320 TGCTCTTAACTTGTACTGTGATTTAA 57.104 30.769 0.00 0.00 0.00 1.52
724 733 9.151471 GATGCTCTTAACTTGTACTGTGATTTA 57.849 33.333 0.00 0.00 0.00 1.40
725 734 7.880195 AGATGCTCTTAACTTGTACTGTGATTT 59.120 33.333 0.00 0.00 0.00 2.17
726 735 7.390027 AGATGCTCTTAACTTGTACTGTGATT 58.610 34.615 0.00 0.00 0.00 2.57
727 736 6.940739 AGATGCTCTTAACTTGTACTGTGAT 58.059 36.000 0.00 0.00 0.00 3.06
728 737 6.346477 AGATGCTCTTAACTTGTACTGTGA 57.654 37.500 0.00 0.00 0.00 3.58
729 738 6.646653 TGAAGATGCTCTTAACTTGTACTGTG 59.353 38.462 0.00 0.00 36.73 3.66
730 739 6.759272 TGAAGATGCTCTTAACTTGTACTGT 58.241 36.000 0.00 0.00 36.73 3.55
731 740 7.171508 TGTTGAAGATGCTCTTAACTTGTACTG 59.828 37.037 0.00 0.00 36.73 2.74
732 741 7.217200 TGTTGAAGATGCTCTTAACTTGTACT 58.783 34.615 0.00 0.00 36.73 2.73
733 742 7.421530 TGTTGAAGATGCTCTTAACTTGTAC 57.578 36.000 0.00 0.00 36.73 2.90
734 743 6.147821 GCTGTTGAAGATGCTCTTAACTTGTA 59.852 38.462 0.00 0.00 36.73 2.41
735 744 5.049129 GCTGTTGAAGATGCTCTTAACTTGT 60.049 40.000 0.00 0.00 36.73 3.16
736 745 5.388944 GCTGTTGAAGATGCTCTTAACTTG 58.611 41.667 0.00 4.49 36.73 3.16
737 746 4.457257 GGCTGTTGAAGATGCTCTTAACTT 59.543 41.667 0.00 0.00 36.73 2.66
738 747 4.006319 GGCTGTTGAAGATGCTCTTAACT 58.994 43.478 0.00 0.00 36.73 2.24
739 748 3.181516 CGGCTGTTGAAGATGCTCTTAAC 60.182 47.826 0.00 5.47 36.73 2.01
740 749 3.002791 CGGCTGTTGAAGATGCTCTTAA 58.997 45.455 0.00 0.00 36.73 1.85
851 867 4.096558 GCGCGCAATCGTTTCCCA 62.097 61.111 29.10 0.00 38.14 4.37
1102 1174 2.129823 GTGTCGAAAGTTCCGAGACA 57.870 50.000 6.92 3.25 45.68 3.41
1183 1255 0.599204 ACGTCGGCGAAGTTCATGTT 60.599 50.000 22.37 0.00 42.00 2.71
1350 1563 1.760613 TGTTCCTCGTTGGTGTCTTCT 59.239 47.619 0.00 0.00 37.07 2.85
1358 1571 2.544267 GTGAAGAACTGTTCCTCGTTGG 59.456 50.000 16.48 0.00 37.10 3.77
1359 1572 2.544267 GGTGAAGAACTGTTCCTCGTTG 59.456 50.000 16.48 0.00 0.00 4.10
1360 1573 2.484947 GGGTGAAGAACTGTTCCTCGTT 60.485 50.000 16.48 4.80 0.00 3.85
1361 1574 1.070289 GGGTGAAGAACTGTTCCTCGT 59.930 52.381 16.48 0.51 0.00 4.18
1362 1575 1.070134 TGGGTGAAGAACTGTTCCTCG 59.930 52.381 16.48 0.00 0.00 4.63
1363 1576 2.368875 TCTGGGTGAAGAACTGTTCCTC 59.631 50.000 16.48 13.76 0.00 3.71
1364 1577 2.370189 CTCTGGGTGAAGAACTGTTCCT 59.630 50.000 16.48 3.96 0.00 3.36
1365 1578 2.551071 CCTCTGGGTGAAGAACTGTTCC 60.551 54.545 16.48 3.60 0.00 3.62
1366 1579 2.368875 TCCTCTGGGTGAAGAACTGTTC 59.631 50.000 12.54 12.54 0.00 3.18
1367 1580 2.370189 CTCCTCTGGGTGAAGAACTGTT 59.630 50.000 0.00 0.00 0.00 3.16
1368 1581 1.974236 CTCCTCTGGGTGAAGAACTGT 59.026 52.381 0.00 0.00 0.00 3.55
1369 1582 1.277557 CCTCCTCTGGGTGAAGAACTG 59.722 57.143 0.00 0.00 0.00 3.16
1370 1583 1.650528 CCTCCTCTGGGTGAAGAACT 58.349 55.000 0.00 0.00 0.00 3.01
1371 1584 0.615850 CCCTCCTCTGGGTGAAGAAC 59.384 60.000 0.00 0.00 42.25 3.01
1372 1585 3.088923 CCCTCCTCTGGGTGAAGAA 57.911 57.895 0.00 0.00 42.25 2.52
1373 1586 4.896979 CCCTCCTCTGGGTGAAGA 57.103 61.111 0.00 0.00 42.25 2.87
1380 1593 2.430610 CCTCTTCGCCCTCCTCTGG 61.431 68.421 0.00 0.00 0.00 3.86
1381 1594 1.380515 TCCTCTTCGCCCTCCTCTG 60.381 63.158 0.00 0.00 0.00 3.35
1382 1595 1.076339 CTCCTCTTCGCCCTCCTCT 60.076 63.158 0.00 0.00 0.00 3.69
1383 1596 1.076632 TCTCCTCTTCGCCCTCCTC 60.077 63.158 0.00 0.00 0.00 3.71
1384 1597 1.076339 CTCTCCTCTTCGCCCTCCT 60.076 63.158 0.00 0.00 0.00 3.69
1385 1598 1.076632 TCTCTCCTCTTCGCCCTCC 60.077 63.158 0.00 0.00 0.00 4.30
1386 1599 1.106944 CCTCTCTCCTCTTCGCCCTC 61.107 65.000 0.00 0.00 0.00 4.30
1387 1600 1.076339 CCTCTCTCCTCTTCGCCCT 60.076 63.158 0.00 0.00 0.00 5.19
1388 1601 1.076632 TCCTCTCTCCTCTTCGCCC 60.077 63.158 0.00 0.00 0.00 6.13
1389 1602 1.734388 GCTCCTCTCTCCTCTTCGCC 61.734 65.000 0.00 0.00 0.00 5.54
1390 1603 1.733526 GCTCCTCTCTCCTCTTCGC 59.266 63.158 0.00 0.00 0.00 4.70
1391 1604 0.462937 TCGCTCCTCTCTCCTCTTCG 60.463 60.000 0.00 0.00 0.00 3.79
1392 1605 1.308998 CTCGCTCCTCTCTCCTCTTC 58.691 60.000 0.00 0.00 0.00 2.87
1393 1606 0.751643 GCTCGCTCCTCTCTCCTCTT 60.752 60.000 0.00 0.00 0.00 2.85
1394 1607 1.152963 GCTCGCTCCTCTCTCCTCT 60.153 63.158 0.00 0.00 0.00 3.69
1395 1608 2.193536 GGCTCGCTCCTCTCTCCTC 61.194 68.421 0.00 0.00 0.00 3.71
1396 1609 2.123897 GGCTCGCTCCTCTCTCCT 60.124 66.667 0.00 0.00 0.00 3.69
1397 1610 3.591835 CGGCTCGCTCCTCTCTCC 61.592 72.222 0.00 0.00 0.00 3.71
1398 1611 2.515057 TCGGCTCGCTCCTCTCTC 60.515 66.667 0.00 0.00 0.00 3.20
1399 1612 1.973816 TAGTCGGCTCGCTCCTCTCT 61.974 60.000 0.00 0.00 0.00 3.10
1400 1613 0.887387 ATAGTCGGCTCGCTCCTCTC 60.887 60.000 0.00 0.00 0.00 3.20
1401 1614 0.466555 AATAGTCGGCTCGCTCCTCT 60.467 55.000 0.00 0.00 0.00 3.69
1402 1615 0.318275 CAATAGTCGGCTCGCTCCTC 60.318 60.000 0.00 0.00 0.00 3.71
1403 1616 1.736586 CAATAGTCGGCTCGCTCCT 59.263 57.895 0.00 0.00 0.00 3.69
1404 1617 1.951631 GCAATAGTCGGCTCGCTCC 60.952 63.158 0.00 0.00 0.00 4.70
1405 1618 0.806102 TTGCAATAGTCGGCTCGCTC 60.806 55.000 0.00 0.00 0.00 5.03
1406 1619 0.807667 CTTGCAATAGTCGGCTCGCT 60.808 55.000 0.00 0.00 0.00 4.93
1407 1620 1.638467 CTTGCAATAGTCGGCTCGC 59.362 57.895 0.00 0.00 0.00 5.03
1408 1621 0.179111 TCCTTGCAATAGTCGGCTCG 60.179 55.000 0.00 0.00 0.00 5.03
1409 1622 1.291132 GTCCTTGCAATAGTCGGCTC 58.709 55.000 0.00 0.00 0.00 4.70
1410 1623 0.613260 TGTCCTTGCAATAGTCGGCT 59.387 50.000 0.00 0.00 0.00 5.52
1411 1624 1.398390 CTTGTCCTTGCAATAGTCGGC 59.602 52.381 0.00 0.00 0.00 5.54
1412 1625 1.398390 GCTTGTCCTTGCAATAGTCGG 59.602 52.381 0.00 0.00 0.00 4.79
1413 1626 1.061131 CGCTTGTCCTTGCAATAGTCG 59.939 52.381 0.00 0.00 0.00 4.18
1414 1627 2.346803 TCGCTTGTCCTTGCAATAGTC 58.653 47.619 0.00 0.00 0.00 2.59
1415 1628 2.472695 TCGCTTGTCCTTGCAATAGT 57.527 45.000 0.00 0.00 0.00 2.12
1416 1629 2.474526 CGTTCGCTTGTCCTTGCAATAG 60.475 50.000 0.00 0.00 0.00 1.73
1417 1630 1.463056 CGTTCGCTTGTCCTTGCAATA 59.537 47.619 0.00 0.00 0.00 1.90
1418 1631 0.238289 CGTTCGCTTGTCCTTGCAAT 59.762 50.000 0.00 0.00 0.00 3.56
1419 1632 1.646540 CGTTCGCTTGTCCTTGCAA 59.353 52.632 0.00 0.00 0.00 4.08
1420 1633 2.892334 GCGTTCGCTTGTCCTTGCA 61.892 57.895 9.99 0.00 0.00 4.08
1421 1634 2.127232 GCGTTCGCTTGTCCTTGC 60.127 61.111 9.99 0.00 0.00 4.01
1422 1635 2.170985 CGCGTTCGCTTGTCCTTG 59.829 61.111 14.92 0.00 0.00 3.61
1423 1636 2.981977 TTCCGCGTTCGCTTGTCCTT 62.982 55.000 14.92 0.00 0.00 3.36
1424 1637 3.509137 TTCCGCGTTCGCTTGTCCT 62.509 57.895 14.92 0.00 0.00 3.85
1425 1638 3.011760 CTTCCGCGTTCGCTTGTCC 62.012 63.158 14.92 0.00 0.00 4.02
1426 1639 2.470286 CTTCCGCGTTCGCTTGTC 59.530 61.111 14.92 0.00 0.00 3.18
1427 1640 3.041940 CCTTCCGCGTTCGCTTGT 61.042 61.111 14.92 0.00 0.00 3.16
1428 1641 4.445545 GCCTTCCGCGTTCGCTTG 62.446 66.667 14.92 6.46 0.00 4.01
1439 1652 2.107141 CGTCCATCTCGGCCTTCC 59.893 66.667 0.00 0.00 33.14 3.46
1440 1653 1.066587 CTCGTCCATCTCGGCCTTC 59.933 63.158 0.00 0.00 33.14 3.46
1441 1654 3.082579 GCTCGTCCATCTCGGCCTT 62.083 63.158 0.00 0.00 33.14 4.35
1442 1655 3.532155 GCTCGTCCATCTCGGCCT 61.532 66.667 0.00 0.00 33.14 5.19
1443 1656 3.371097 TTGCTCGTCCATCTCGGCC 62.371 63.158 0.00 0.00 33.14 6.13
1444 1657 1.880340 CTTGCTCGTCCATCTCGGC 60.880 63.158 0.00 0.00 33.14 5.54
1445 1658 1.880340 GCTTGCTCGTCCATCTCGG 60.880 63.158 0.00 0.00 0.00 4.63
1446 1659 1.880340 GGCTTGCTCGTCCATCTCG 60.880 63.158 0.00 0.00 0.00 4.04
1447 1660 0.179062 ATGGCTTGCTCGTCCATCTC 60.179 55.000 0.00 0.00 35.85 2.75
1448 1661 0.463295 CATGGCTTGCTCGTCCATCT 60.463 55.000 0.00 0.00 38.46 2.90
1449 1662 1.442526 CCATGGCTTGCTCGTCCATC 61.443 60.000 0.00 0.00 38.46 3.51
1450 1663 1.452651 CCATGGCTTGCTCGTCCAT 60.453 57.895 0.00 0.00 40.98 3.41
1451 1664 2.046023 CCATGGCTTGCTCGTCCA 60.046 61.111 0.00 0.00 0.00 4.02
1452 1665 3.512516 GCCATGGCTTGCTCGTCC 61.513 66.667 29.98 0.00 38.26 4.79
1453 1666 3.869272 CGCCATGGCTTGCTCGTC 61.869 66.667 33.07 2.52 39.32 4.20
1456 1669 4.189188 CAGCGCCATGGCTTGCTC 62.189 66.667 33.07 16.55 42.53 4.26
1458 1671 4.789075 CACAGCGCCATGGCTTGC 62.789 66.667 33.07 28.42 42.53 4.01
1459 1672 4.124351 CCACAGCGCCATGGCTTG 62.124 66.667 33.07 29.66 42.53 4.01
1460 1673 4.349503 TCCACAGCGCCATGGCTT 62.350 61.111 33.07 19.12 42.53 4.35
1461 1674 4.790962 CTCCACAGCGCCATGGCT 62.791 66.667 33.07 14.30 46.13 4.75
1463 1676 2.821366 GACTCCACAGCGCCATGG 60.821 66.667 19.19 19.19 37.32 3.66
1464 1677 1.434622 GATGACTCCACAGCGCCATG 61.435 60.000 2.29 1.83 0.00 3.66
1465 1678 1.153289 GATGACTCCACAGCGCCAT 60.153 57.895 2.29 0.00 0.00 4.40
1466 1679 2.265739 GATGACTCCACAGCGCCA 59.734 61.111 2.29 0.00 0.00 5.69
1467 1680 2.887568 CGATGACTCCACAGCGCC 60.888 66.667 2.29 0.00 42.22 6.53
1470 1683 1.086634 GGAAGCGATGACTCCACAGC 61.087 60.000 0.00 0.00 0.00 4.40
1471 1684 0.460987 GGGAAGCGATGACTCCACAG 60.461 60.000 0.00 0.00 0.00 3.66
1472 1685 1.596934 GGGAAGCGATGACTCCACA 59.403 57.895 0.00 0.00 0.00 4.17
1473 1686 1.519455 CGGGAAGCGATGACTCCAC 60.519 63.158 0.00 0.00 0.00 4.02
1474 1687 2.721167 CCGGGAAGCGATGACTCCA 61.721 63.158 0.00 0.00 0.00 3.86
1475 1688 1.956629 TTCCGGGAAGCGATGACTCC 61.957 60.000 5.09 0.00 0.00 3.85
1476 1689 0.528684 CTTCCGGGAAGCGATGACTC 60.529 60.000 22.93 0.00 32.78 3.36
1477 1690 0.970937 TCTTCCGGGAAGCGATGACT 60.971 55.000 28.24 0.00 39.29 3.41
1478 1691 0.806492 GTCTTCCGGGAAGCGATGAC 60.806 60.000 28.24 18.38 39.29 3.06
1479 1692 1.254975 TGTCTTCCGGGAAGCGATGA 61.255 55.000 28.24 11.24 39.29 2.92
1480 1693 1.084370 GTGTCTTCCGGGAAGCGATG 61.084 60.000 28.24 9.06 39.29 3.84
1481 1694 1.218316 GTGTCTTCCGGGAAGCGAT 59.782 57.895 28.24 0.00 39.29 4.58
1482 1695 2.654877 GTGTCTTCCGGGAAGCGA 59.345 61.111 28.24 15.81 39.29 4.93
1483 1696 2.434359 GGTGTCTTCCGGGAAGCG 60.434 66.667 28.24 10.49 39.29 4.68
1484 1697 0.322546 ATTGGTGTCTTCCGGGAAGC 60.323 55.000 28.24 22.74 39.29 3.86
1485 1698 1.003118 TCATTGGTGTCTTCCGGGAAG 59.997 52.381 27.38 27.38 40.65 3.46
1486 1699 1.003118 CTCATTGGTGTCTTCCGGGAA 59.997 52.381 9.52 9.52 0.00 3.97
1487 1700 0.613260 CTCATTGGTGTCTTCCGGGA 59.387 55.000 0.00 0.00 0.00 5.14
1488 1701 0.392998 CCTCATTGGTGTCTTCCGGG 60.393 60.000 0.00 0.00 0.00 5.73
1489 1702 0.613260 TCCTCATTGGTGTCTTCCGG 59.387 55.000 0.00 0.00 37.07 5.14
1490 1703 2.076863 GTTCCTCATTGGTGTCTTCCG 58.923 52.381 0.00 0.00 37.07 4.30
1491 1704 3.077359 CTGTTCCTCATTGGTGTCTTCC 58.923 50.000 0.00 0.00 37.07 3.46
1492 1705 3.744660 ACTGTTCCTCATTGGTGTCTTC 58.255 45.455 0.00 0.00 37.07 2.87
1493 1706 3.864789 ACTGTTCCTCATTGGTGTCTT 57.135 42.857 0.00 0.00 37.07 3.01
1494 1707 3.392616 AGAACTGTTCCTCATTGGTGTCT 59.607 43.478 16.48 0.00 37.07 3.41
1495 1708 3.744660 AGAACTGTTCCTCATTGGTGTC 58.255 45.455 16.48 0.00 37.07 3.67
1496 1709 3.864789 AGAACTGTTCCTCATTGGTGT 57.135 42.857 16.48 0.00 37.07 4.16
1497 1710 4.023707 GTGAAGAACTGTTCCTCATTGGTG 60.024 45.833 21.05 0.00 33.12 4.17
1498 1711 4.137543 GTGAAGAACTGTTCCTCATTGGT 58.862 43.478 21.05 0.00 33.12 3.67
1561 1822 2.733218 CGTTCGCTTGTCCTCGCA 60.733 61.111 0.00 0.00 0.00 5.10
1622 1883 0.316204 GTCGTCGGAGTTCCAGGAAA 59.684 55.000 2.45 0.00 35.14 3.13
1623 1884 1.859427 CGTCGTCGGAGTTCCAGGAA 61.859 60.000 0.00 0.00 35.14 3.36
1787 2077 9.530633 ACATATTTGGTTTCGTAGATAGTTCTC 57.469 33.333 0.00 0.00 35.04 2.87
1967 2257 4.389576 CTCCAACAGCCGCGCAAC 62.390 66.667 8.75 0.00 0.00 4.17
1968 2258 3.899981 ATCTCCAACAGCCGCGCAA 62.900 57.895 8.75 0.00 0.00 4.85
1969 2259 4.393155 ATCTCCAACAGCCGCGCA 62.393 61.111 8.75 0.00 0.00 6.09
1970 2260 3.869272 CATCTCCAACAGCCGCGC 61.869 66.667 0.00 0.00 0.00 6.86
1971 2261 3.869272 GCATCTCCAACAGCCGCG 61.869 66.667 0.00 0.00 0.00 6.46
1972 2262 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
1973 2263 0.108186 TACAGCATCTCCAACAGCCG 60.108 55.000 0.00 0.00 0.00 5.52
1974 2264 2.012673 CTTACAGCATCTCCAACAGCC 58.987 52.381 0.00 0.00 0.00 4.85
1975 2265 2.935201 CTCTTACAGCATCTCCAACAGC 59.065 50.000 0.00 0.00 0.00 4.40
1976 2266 4.180057 GTCTCTTACAGCATCTCCAACAG 58.820 47.826 0.00 0.00 0.00 3.16
1977 2267 3.578282 TGTCTCTTACAGCATCTCCAACA 59.422 43.478 0.00 0.00 33.01 3.33
1978 2268 4.193826 TGTCTCTTACAGCATCTCCAAC 57.806 45.455 0.00 0.00 33.01 3.77
1989 2279 4.441495 CCAATACCGCATCTGTCTCTTACA 60.441 45.833 0.00 0.00 36.42 2.41
1990 2280 4.051922 CCAATACCGCATCTGTCTCTTAC 58.948 47.826 0.00 0.00 0.00 2.34
1991 2281 3.958147 TCCAATACCGCATCTGTCTCTTA 59.042 43.478 0.00 0.00 0.00 2.10
1992 2282 2.766263 TCCAATACCGCATCTGTCTCTT 59.234 45.455 0.00 0.00 0.00 2.85
1993 2283 2.388735 TCCAATACCGCATCTGTCTCT 58.611 47.619 0.00 0.00 0.00 3.10
1994 2284 2.890808 TCCAATACCGCATCTGTCTC 57.109 50.000 0.00 0.00 0.00 3.36
1995 2285 2.288457 CGATCCAATACCGCATCTGTCT 60.288 50.000 0.00 0.00 0.00 3.41
1996 2286 2.061773 CGATCCAATACCGCATCTGTC 58.938 52.381 0.00 0.00 0.00 3.51
1997 2287 1.686587 TCGATCCAATACCGCATCTGT 59.313 47.619 0.00 0.00 0.00 3.41
1998 2288 2.029918 TCTCGATCCAATACCGCATCTG 60.030 50.000 0.00 0.00 0.00 2.90
1999 2289 2.029828 GTCTCGATCCAATACCGCATCT 60.030 50.000 0.00 0.00 0.00 2.90
2000 2290 2.329379 GTCTCGATCCAATACCGCATC 58.671 52.381 0.00 0.00 0.00 3.91
2001 2291 1.335964 CGTCTCGATCCAATACCGCAT 60.336 52.381 0.00 0.00 0.00 4.73
2002 2292 0.030235 CGTCTCGATCCAATACCGCA 59.970 55.000 0.00 0.00 0.00 5.69
2003 2293 0.309922 TCGTCTCGATCCAATACCGC 59.690 55.000 0.00 0.00 0.00 5.68
2004 2294 1.602851 AGTCGTCTCGATCCAATACCG 59.397 52.381 0.00 0.00 38.42 4.02
2005 2295 2.879646 AGAGTCGTCTCGATCCAATACC 59.120 50.000 4.01 0.00 44.65 2.73
2006 2296 4.283678 CAAGAGTCGTCTCGATCCAATAC 58.716 47.826 4.01 0.00 44.65 1.89
2007 2297 3.243101 GCAAGAGTCGTCTCGATCCAATA 60.243 47.826 4.01 0.00 44.65 1.90
2008 2298 2.480416 GCAAGAGTCGTCTCGATCCAAT 60.480 50.000 4.01 0.00 44.65 3.16
2009 2299 1.135373 GCAAGAGTCGTCTCGATCCAA 60.135 52.381 4.01 0.00 44.65 3.53
2010 2300 0.452184 GCAAGAGTCGTCTCGATCCA 59.548 55.000 4.01 0.00 44.65 3.41
2011 2301 0.452184 TGCAAGAGTCGTCTCGATCC 59.548 55.000 4.01 0.00 44.65 3.36
2012 2302 2.223363 TGATGCAAGAGTCGTCTCGATC 60.223 50.000 4.01 5.80 44.65 3.69
2013 2303 1.745653 TGATGCAAGAGTCGTCTCGAT 59.254 47.619 4.01 0.00 44.65 3.59
2014 2304 1.135660 GTGATGCAAGAGTCGTCTCGA 60.136 52.381 4.01 0.00 44.65 4.04
2015 2305 1.135546 AGTGATGCAAGAGTCGTCTCG 60.136 52.381 4.01 0.00 44.65 4.04
2016 2306 2.645730 AGTGATGCAAGAGTCGTCTC 57.354 50.000 1.04 1.04 40.70 3.36
2017 2307 3.348119 TCTAGTGATGCAAGAGTCGTCT 58.652 45.455 0.00 0.00 32.81 4.18
2018 2308 3.766676 TCTAGTGATGCAAGAGTCGTC 57.233 47.619 0.00 0.00 0.00 4.20
2019 2309 3.119316 CCTTCTAGTGATGCAAGAGTCGT 60.119 47.826 0.00 0.00 0.00 4.34
2020 2310 3.129462 TCCTTCTAGTGATGCAAGAGTCG 59.871 47.826 0.00 0.00 0.00 4.18
2021 2311 4.727507 TCCTTCTAGTGATGCAAGAGTC 57.272 45.455 0.00 0.00 0.00 3.36
2022 2312 4.100808 GGATCCTTCTAGTGATGCAAGAGT 59.899 45.833 3.84 0.00 30.56 3.24
2023 2313 4.344679 AGGATCCTTCTAGTGATGCAAGAG 59.655 45.833 9.02 0.00 32.37 2.85
2024 2314 4.293494 AGGATCCTTCTAGTGATGCAAGA 58.707 43.478 9.02 0.00 32.37 3.02
2025 2315 4.686191 AGGATCCTTCTAGTGATGCAAG 57.314 45.455 9.02 0.00 32.37 4.01
2026 2316 5.211973 ACTAGGATCCTTCTAGTGATGCAA 58.788 41.667 22.03 0.00 43.87 4.08
2027 2317 4.809193 ACTAGGATCCTTCTAGTGATGCA 58.191 43.478 22.03 0.00 43.87 3.96
2028 2318 5.799827 AACTAGGATCCTTCTAGTGATGC 57.200 43.478 22.03 0.00 44.52 3.91
2096 2387 9.768662 AGAGCACATTTAACAAAAATGAGAATT 57.231 25.926 15.35 0.00 39.36 2.17
2097 2388 9.768662 AAGAGCACATTTAACAAAAATGAGAAT 57.231 25.926 15.35 2.81 39.36 2.40
2140 2431 0.962356 AAGAACCAGCCCGATTGCAG 60.962 55.000 0.00 0.00 0.00 4.41
2141 2432 0.539438 AAAGAACCAGCCCGATTGCA 60.539 50.000 0.00 0.00 0.00 4.08
2221 2512 2.301870 ACAAAGCGTCCTAGAATGACCA 59.698 45.455 0.00 0.00 0.00 4.02
2247 2538 6.114767 AGAAGAATTTGCCAGAAGAGAGATC 58.885 40.000 0.00 0.00 0.00 2.75
2259 2550 1.537202 ACTGCACGAGAAGAATTTGCC 59.463 47.619 0.00 0.00 31.94 4.52
2273 2564 2.536803 TGTTTCGTTAGTTCGACTGCAC 59.463 45.455 0.00 0.00 39.58 4.57
2328 2619 5.882040 AGGGGGAGAGAAAACTAAAGAAAG 58.118 41.667 0.00 0.00 0.00 2.62
2387 2678 6.601613 TGGTGTAGAAAAGAGTTCACAACAAT 59.398 34.615 6.81 0.00 31.11 2.71
2400 2691 9.981114 AATTTCCAAATAAGTGGTGTAGAAAAG 57.019 29.630 0.00 0.00 39.88 2.27
2432 2723 6.072112 ACAACATCACTCTTTTGCGTATTT 57.928 33.333 0.00 0.00 0.00 1.40
2566 2859 8.745590 CCAGATCATAATGCCATGAATTAATCA 58.254 33.333 0.00 0.00 43.67 2.57
2567 2860 7.705325 GCCAGATCATAATGCCATGAATTAATC 59.295 37.037 0.00 0.46 38.39 1.75
2576 2892 2.377531 TGAGGCCAGATCATAATGCCAT 59.622 45.455 5.01 0.59 44.60 4.40
2606 2922 1.076533 GAAAGACCGATCTGCGCGAA 61.077 55.000 12.10 0.00 39.11 4.70
2608 2924 1.078759 AAGAAAGACCGATCTGCGCG 61.079 55.000 0.00 0.00 39.11 6.86
2610 2926 3.186409 TGAAAAAGAAAGACCGATCTGCG 59.814 43.478 0.00 0.00 34.48 5.18
2619 2935 9.520204 TTCTGTCATGAATTGAAAAAGAAAGAC 57.480 29.630 0.00 0.00 35.70 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.