Multiple sequence alignment - TraesCS2A01G428400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G428400 chr2A 100.000 4916 0 0 1 4916 681191009 681195924 0.000000e+00 9079
1 TraesCS2A01G428400 chr2A 100.000 481 0 0 5074 5554 681196082 681196562 0.000000e+00 889
2 TraesCS2A01G428400 chr2A 99.587 242 1 0 1499 1740 553492516 553492275 5.110000e-120 442
3 TraesCS2A01G428400 chr2B 96.608 3184 93 8 1738 4916 641865126 641868299 0.000000e+00 5267
4 TraesCS2A01G428400 chr2B 87.919 1341 49 33 218 1500 641863842 641865127 0.000000e+00 1474
5 TraesCS2A01G428400 chr2B 85.398 452 43 10 5121 5554 641868358 641868804 1.100000e-121 448
6 TraesCS2A01G428400 chr2B 97.308 260 5 2 1491 1748 62449478 62449737 1.840000e-119 440
7 TraesCS2A01G428400 chr2B 89.051 137 12 3 50 186 641857225 641857358 3.440000e-37 167
8 TraesCS2A01G428400 chr2B 91.000 100 8 1 103 201 641863219 641863318 3.490000e-27 134
9 TraesCS2A01G428400 chr2D 95.730 3185 96 11 1745 4916 538727440 538730597 0.000000e+00 5092
10 TraesCS2A01G428400 chr2D 89.956 1354 55 29 201 1500 538726115 538727441 0.000000e+00 1672
11 TraesCS2A01G428400 chr2D 84.648 469 54 11 5074 5539 538730660 538731113 8.480000e-123 451
12 TraesCS2A01G428400 chr2D 92.763 152 11 0 50 201 538725925 538726076 2.600000e-53 220
13 TraesCS2A01G428400 chr3A 98.795 249 3 0 1492 1740 19876358 19876606 1.420000e-120 444
14 TraesCS2A01G428400 chr1B 99.587 242 1 0 1499 1740 668067207 668066966 5.110000e-120 442
15 TraesCS2A01G428400 chr1B 98.413 252 2 2 1489 1740 687177485 687177734 5.110000e-120 442
16 TraesCS2A01G428400 chr1B 98.785 247 3 0 1499 1745 373630749 373630995 1.840000e-119 440
17 TraesCS2A01G428400 chr1B 98.400 250 2 2 1491 1739 551222661 551222413 6.610000e-119 438
18 TraesCS2A01G428400 chr1A 99.587 242 1 0 1499 1740 580495303 580495062 5.110000e-120 442
19 TraesCS2A01G428400 chr7A 98.790 248 2 1 1496 1742 173058761 173058514 1.840000e-119 440


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G428400 chr2A 681191009 681196562 5553 False 4984.00 9079 100.00000 1 5554 2 chr2A.!!$F1 5553
1 TraesCS2A01G428400 chr2B 641863219 641868804 5585 False 1830.75 5267 90.23125 103 5554 4 chr2B.!!$F3 5451
2 TraesCS2A01G428400 chr2D 538725925 538731113 5188 False 1858.75 5092 90.77425 50 5539 4 chr2D.!!$F1 5489

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
438 966 0.243636 GGCACGTTCCCAATTCCAAG 59.756 55.0 0.00 0.0 0.00 3.61 F
1530 2110 0.040425 CCAAAATATAGCGCGCCCAC 60.040 55.0 30.33 0.0 0.00 4.61 F
1719 2299 0.029834 GAAACCGAGGACGCGCTATA 59.970 55.0 5.73 0.0 38.29 1.31 F
2508 3090 0.038343 GCTTCGGAAATGGCAAAGCA 60.038 50.0 13.01 0.0 41.46 3.91 F
4267 4849 0.402121 ACCAAGGCTGAACCCTCTTC 59.598 55.0 0.00 0.0 40.58 2.87 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1700 2280 0.029834 TATAGCGCGTCCTCGGTTTC 59.970 55.000 8.43 0.00 40.82 2.78 R
3380 3962 1.207488 TAGCAACCACCTCCAGCCAT 61.207 55.000 0.00 0.00 0.00 4.40 R
3453 4035 1.446272 GAGGAACCTTGGCGACTCG 60.446 63.158 0.00 0.00 0.00 4.18 R
4337 4919 1.153549 GATGCCTGTCGTCCTCACC 60.154 63.158 0.00 0.00 0.00 4.02 R
5177 5771 0.512952 AACATTCGACTTGCAGCGTC 59.487 50.000 7.86 7.86 0.00 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 4.873746 TGTCTTAGGTTCTGAACTGAGG 57.126 45.455 19.05 8.74 0.00 3.86
24 25 3.006967 TGTCTTAGGTTCTGAACTGAGGC 59.993 47.826 19.05 15.23 0.00 4.70
25 26 3.006967 GTCTTAGGTTCTGAACTGAGGCA 59.993 47.826 19.05 0.00 0.00 4.75
26 27 3.006967 TCTTAGGTTCTGAACTGAGGCAC 59.993 47.826 19.05 2.02 0.00 5.01
28 29 1.771255 AGGTTCTGAACTGAGGCACTT 59.229 47.619 19.05 0.00 41.55 3.16
29 30 2.147150 GGTTCTGAACTGAGGCACTTC 58.853 52.381 19.05 0.00 41.55 3.01
30 31 2.485479 GGTTCTGAACTGAGGCACTTCA 60.485 50.000 19.05 0.00 41.55 3.02
31 32 3.206150 GTTCTGAACTGAGGCACTTCAA 58.794 45.455 13.13 0.00 41.55 2.69
32 33 2.838736 TCTGAACTGAGGCACTTCAAC 58.161 47.619 0.00 0.00 41.55 3.18
33 34 2.435805 TCTGAACTGAGGCACTTCAACT 59.564 45.455 0.00 0.00 41.55 3.16
34 35 2.547211 CTGAACTGAGGCACTTCAACTG 59.453 50.000 0.00 0.00 41.55 3.16
35 36 2.092968 TGAACTGAGGCACTTCAACTGT 60.093 45.455 0.00 0.00 41.55 3.55
36 37 1.959042 ACTGAGGCACTTCAACTGTG 58.041 50.000 0.00 0.00 41.55 3.66
37 38 1.210478 ACTGAGGCACTTCAACTGTGT 59.790 47.619 0.00 0.00 41.55 3.72
38 39 2.292267 CTGAGGCACTTCAACTGTGTT 58.708 47.619 0.00 0.00 41.55 3.32
39 40 3.118408 ACTGAGGCACTTCAACTGTGTTA 60.118 43.478 0.00 0.00 41.55 2.41
40 41 4.067896 CTGAGGCACTTCAACTGTGTTAT 58.932 43.478 0.00 0.00 41.55 1.89
41 42 3.814842 TGAGGCACTTCAACTGTGTTATG 59.185 43.478 0.00 0.00 41.55 1.90
42 43 3.149196 AGGCACTTCAACTGTGTTATGG 58.851 45.455 0.00 0.00 37.70 2.74
43 44 3.146066 GGCACTTCAACTGTGTTATGGA 58.854 45.455 0.00 0.00 37.70 3.41
44 45 3.189287 GGCACTTCAACTGTGTTATGGAG 59.811 47.826 0.00 0.00 37.70 3.86
45 46 3.815401 GCACTTCAACTGTGTTATGGAGT 59.185 43.478 0.00 0.00 37.70 3.85
46 47 4.994852 GCACTTCAACTGTGTTATGGAGTA 59.005 41.667 0.00 0.00 37.70 2.59
47 48 5.643777 GCACTTCAACTGTGTTATGGAGTAT 59.356 40.000 0.00 0.00 37.70 2.12
48 49 6.816640 GCACTTCAACTGTGTTATGGAGTATA 59.183 38.462 0.00 0.00 37.70 1.47
52 53 9.383519 CTTCAACTGTGTTATGGAGTATATGTT 57.616 33.333 0.00 0.00 0.00 2.71
54 55 8.318412 TCAACTGTGTTATGGAGTATATGTTGT 58.682 33.333 0.00 0.00 33.80 3.32
75 76 4.777896 TGTACTATCCTCTTGCAAGGTTCT 59.222 41.667 25.73 11.37 37.69 3.01
84 85 4.836825 TCTTGCAAGGTTCTCCATTCTAG 58.163 43.478 25.73 0.00 35.89 2.43
113 114 8.242053 CCTCATATTTTCATGATCCAAGTATGC 58.758 37.037 12.75 0.00 34.50 3.14
124 125 7.092137 TGATCCAAGTATGCTGAAGAAAATG 57.908 36.000 0.00 0.00 0.00 2.32
264 785 3.291585 CAACGCACAGATCAAGTCAAAC 58.708 45.455 0.00 0.00 0.00 2.93
323 850 4.220413 CGGTAGCTCTCACGGAGA 57.780 61.111 0.00 3.97 44.45 3.71
427 955 2.970324 TTGACTGCGGGCACGTTC 60.970 61.111 11.45 4.89 43.45 3.95
432 960 4.652131 TGCGGGCACGTTCCCAAT 62.652 61.111 23.51 0.00 46.92 3.16
433 961 3.370231 GCGGGCACGTTCCCAATT 61.370 61.111 23.51 0.00 46.92 2.32
434 962 2.874751 CGGGCACGTTCCCAATTC 59.125 61.111 23.51 0.00 46.92 2.17
436 964 1.605165 GGGCACGTTCCCAATTCCA 60.605 57.895 19.24 0.00 45.82 3.53
437 965 1.182385 GGGCACGTTCCCAATTCCAA 61.182 55.000 19.24 0.00 45.82 3.53
438 966 0.243636 GGCACGTTCCCAATTCCAAG 59.756 55.000 0.00 0.00 0.00 3.61
439 967 0.388520 GCACGTTCCCAATTCCAAGC 60.389 55.000 0.00 0.00 0.00 4.01
440 968 1.247567 CACGTTCCCAATTCCAAGCT 58.752 50.000 0.00 0.00 0.00 3.74
443 971 1.886222 CGTTCCCAATTCCAAGCTCCA 60.886 52.381 0.00 0.00 0.00 3.86
444 972 1.546029 GTTCCCAATTCCAAGCTCCAC 59.454 52.381 0.00 0.00 0.00 4.02
445 973 0.322456 TCCCAATTCCAAGCTCCACG 60.322 55.000 0.00 0.00 0.00 4.94
446 974 1.315257 CCCAATTCCAAGCTCCACGG 61.315 60.000 0.00 0.00 0.00 4.94
447 975 1.315257 CCAATTCCAAGCTCCACGGG 61.315 60.000 0.00 0.00 0.00 5.28
448 976 1.000896 AATTCCAAGCTCCACGGGG 60.001 57.895 0.00 0.00 0.00 5.73
449 977 1.497309 AATTCCAAGCTCCACGGGGA 61.497 55.000 6.08 6.08 42.29 4.81
450 978 2.198304 ATTCCAAGCTCCACGGGGAC 62.198 60.000 0.00 0.00 38.64 4.46
516 1044 1.202627 GCATCTTCGCATCTCCTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
525 1061 1.979389 ATCTCCTTCCTCCCTCCCCC 61.979 65.000 0.00 0.00 0.00 5.40
526 1062 2.879490 TCCTTCCTCCCTCCCCCA 60.879 66.667 0.00 0.00 0.00 4.96
527 1063 2.272170 TCCTTCCTCCCTCCCCCAT 61.272 63.158 0.00 0.00 0.00 4.00
577 1113 1.542187 GCCAACCTACGACCCAGACT 61.542 60.000 0.00 0.00 0.00 3.24
591 1127 4.530857 GACTCGCCACCCATCCCG 62.531 72.222 0.00 0.00 0.00 5.14
663 1199 2.761195 GCGCCAGGATTTCGTTCCC 61.761 63.158 0.00 0.00 36.35 3.97
800 1348 2.269241 CTCCGGTTTGCTCCCTCC 59.731 66.667 0.00 0.00 0.00 4.30
805 1353 1.604915 GGTTTGCTCCCTCCTCTCC 59.395 63.158 0.00 0.00 0.00 3.71
874 1422 2.505337 TGATCCGTACGTGCGTGC 60.505 61.111 24.09 13.14 0.00 5.34
876 1424 3.695022 GATCCGTACGTGCGTGCCT 62.695 63.158 24.09 5.99 0.00 4.75
1088 1651 2.692041 CCCATTTCTTCAGATTCAGCCC 59.308 50.000 0.00 0.00 0.00 5.19
1097 1660 2.047274 ATTCAGCCCGTGTCGGTG 60.047 61.111 7.40 0.54 46.80 4.94
1200 1763 4.388165 CGCTATTACCATTGATGCTCTCTG 59.612 45.833 0.00 0.00 0.00 3.35
1319 1899 5.709631 TGTATTCATGCTTAAGTTGCTTGGA 59.290 36.000 4.02 0.00 36.59 3.53
1375 1955 9.114952 GATCTATGATCTATCTAATGTCCGACA 57.885 37.037 3.10 3.10 0.00 4.35
1394 1974 2.205074 CACATCGATGCCTAACACTCC 58.795 52.381 25.11 0.00 0.00 3.85
1399 1979 3.562182 TCGATGCCTAACACTCCTGATA 58.438 45.455 0.00 0.00 0.00 2.15
1407 1987 3.988976 AACACTCCTGATACATGCAGT 57.011 42.857 0.00 0.00 0.00 4.40
1418 1998 4.637091 TGATACATGCAGTCATCCTGTTTG 59.363 41.667 0.00 0.00 43.55 2.93
1419 1999 2.867624 ACATGCAGTCATCCTGTTTGT 58.132 42.857 0.00 0.00 43.55 2.83
1438 2018 3.459145 TGTGTGTGTGTGTATTAACGCT 58.541 40.909 0.00 0.00 37.03 5.07
1465 2045 5.412904 AGTTGCTTGGACATTAGTAGAAAGC 59.587 40.000 0.00 0.00 37.71 3.51
1500 2080 8.364142 ACTGCTTTTGGATCTAGTATGATCTAC 58.636 37.037 0.00 0.00 41.72 2.59
1501 2081 8.484214 TGCTTTTGGATCTAGTATGATCTACT 57.516 34.615 9.04 9.04 41.72 2.57
1502 2082 8.580720 TGCTTTTGGATCTAGTATGATCTACTC 58.419 37.037 7.77 0.00 41.72 2.59
1503 2083 8.032451 GCTTTTGGATCTAGTATGATCTACTCC 58.968 40.741 7.77 5.36 41.72 3.85
1504 2084 8.423906 TTTTGGATCTAGTATGATCTACTCCC 57.576 38.462 7.77 6.90 41.72 4.30
1505 2085 6.979018 TGGATCTAGTATGATCTACTCCCT 57.021 41.667 7.77 0.00 41.72 4.20
1506 2086 6.964464 TGGATCTAGTATGATCTACTCCCTC 58.036 44.000 7.77 4.80 41.72 4.30
1507 2087 6.069323 TGGATCTAGTATGATCTACTCCCTCC 60.069 46.154 7.77 11.08 41.72 4.30
1508 2088 5.423704 TCTAGTATGATCTACTCCCTCCG 57.576 47.826 7.77 0.00 0.00 4.63
1509 2089 4.845225 TCTAGTATGATCTACTCCCTCCGT 59.155 45.833 7.77 0.00 0.00 4.69
1510 2090 4.456662 AGTATGATCTACTCCCTCCGTT 57.543 45.455 0.00 0.00 0.00 4.44
1511 2091 4.400120 AGTATGATCTACTCCCTCCGTTC 58.600 47.826 0.00 0.00 0.00 3.95
1512 2092 2.068834 TGATCTACTCCCTCCGTTCC 57.931 55.000 0.00 0.00 0.00 3.62
1513 2093 1.286849 TGATCTACTCCCTCCGTTCCA 59.713 52.381 0.00 0.00 0.00 3.53
1514 2094 2.291996 TGATCTACTCCCTCCGTTCCAA 60.292 50.000 0.00 0.00 0.00 3.53
1515 2095 2.314071 TCTACTCCCTCCGTTCCAAA 57.686 50.000 0.00 0.00 0.00 3.28
1516 2096 2.612000 TCTACTCCCTCCGTTCCAAAA 58.388 47.619 0.00 0.00 0.00 2.44
1517 2097 3.178865 TCTACTCCCTCCGTTCCAAAAT 58.821 45.455 0.00 0.00 0.00 1.82
1518 2098 4.355549 TCTACTCCCTCCGTTCCAAAATA 58.644 43.478 0.00 0.00 0.00 1.40
1519 2099 4.966805 TCTACTCCCTCCGTTCCAAAATAT 59.033 41.667 0.00 0.00 0.00 1.28
1520 2100 6.138263 TCTACTCCCTCCGTTCCAAAATATA 58.862 40.000 0.00 0.00 0.00 0.86
1521 2101 5.291905 ACTCCCTCCGTTCCAAAATATAG 57.708 43.478 0.00 0.00 0.00 1.31
1522 2102 4.065789 CTCCCTCCGTTCCAAAATATAGC 58.934 47.826 0.00 0.00 0.00 2.97
1523 2103 2.806244 CCCTCCGTTCCAAAATATAGCG 59.194 50.000 0.00 0.00 0.00 4.26
1524 2104 2.223377 CCTCCGTTCCAAAATATAGCGC 59.777 50.000 0.00 0.00 0.00 5.92
1525 2105 1.862201 TCCGTTCCAAAATATAGCGCG 59.138 47.619 0.00 0.00 0.00 6.86
1526 2106 1.658968 CGTTCCAAAATATAGCGCGC 58.341 50.000 26.66 26.66 0.00 6.86
1527 2107 1.659211 CGTTCCAAAATATAGCGCGCC 60.659 52.381 30.33 10.31 0.00 6.53
1528 2108 0.948678 TTCCAAAATATAGCGCGCCC 59.051 50.000 30.33 0.16 0.00 6.13
1529 2109 0.179043 TCCAAAATATAGCGCGCCCA 60.179 50.000 30.33 17.44 0.00 5.36
1530 2110 0.040425 CCAAAATATAGCGCGCCCAC 60.040 55.000 30.33 0.00 0.00 4.61
1531 2111 0.384230 CAAAATATAGCGCGCCCACG 60.384 55.000 30.33 4.40 44.07 4.94
1541 2121 3.788766 CGCCCACGCTTTTCGAGG 61.789 66.667 0.00 0.00 46.50 4.63
1542 2122 2.668550 GCCCACGCTTTTCGAGGT 60.669 61.111 0.71 0.00 45.67 3.85
1543 2123 2.258726 GCCCACGCTTTTCGAGGTT 61.259 57.895 0.71 0.00 45.67 3.50
1544 2124 1.866925 CCCACGCTTTTCGAGGTTC 59.133 57.895 0.71 0.00 45.67 3.62
1545 2125 0.882927 CCCACGCTTTTCGAGGTTCA 60.883 55.000 0.71 0.00 45.67 3.18
1546 2126 0.941542 CCACGCTTTTCGAGGTTCAA 59.058 50.000 0.00 0.00 42.79 2.69
1547 2127 1.333791 CCACGCTTTTCGAGGTTCAAC 60.334 52.381 0.00 0.00 42.79 3.18
1548 2128 1.597663 CACGCTTTTCGAGGTTCAACT 59.402 47.619 0.00 0.00 41.67 3.16
1549 2129 2.031683 CACGCTTTTCGAGGTTCAACTT 59.968 45.455 0.00 0.00 41.67 2.66
1550 2130 2.681344 ACGCTTTTCGAGGTTCAACTTT 59.319 40.909 0.00 0.00 41.67 2.66
1551 2131 3.035942 CGCTTTTCGAGGTTCAACTTTG 58.964 45.455 0.00 0.00 41.67 2.77
1552 2132 3.242608 CGCTTTTCGAGGTTCAACTTTGA 60.243 43.478 0.00 0.00 41.67 2.69
1553 2133 4.035684 GCTTTTCGAGGTTCAACTTTGAC 58.964 43.478 0.00 0.00 36.83 3.18
1554 2134 4.598062 CTTTTCGAGGTTCAACTTTGACC 58.402 43.478 0.00 0.00 36.83 4.02
1555 2135 2.992124 TCGAGGTTCAACTTTGACCA 57.008 45.000 11.01 0.00 36.83 4.02
1556 2136 3.485463 TCGAGGTTCAACTTTGACCAT 57.515 42.857 11.01 0.00 36.83 3.55
1557 2137 4.610605 TCGAGGTTCAACTTTGACCATA 57.389 40.909 11.01 0.00 36.83 2.74
1558 2138 4.963373 TCGAGGTTCAACTTTGACCATAA 58.037 39.130 11.01 0.00 36.83 1.90
1559 2139 5.369833 TCGAGGTTCAACTTTGACCATAAA 58.630 37.500 11.01 0.00 36.83 1.40
1560 2140 6.001460 TCGAGGTTCAACTTTGACCATAAAT 58.999 36.000 11.01 0.00 36.83 1.40
1561 2141 6.488683 TCGAGGTTCAACTTTGACCATAAATT 59.511 34.615 11.01 0.00 36.83 1.82
1562 2142 7.013846 TCGAGGTTCAACTTTGACCATAAATTT 59.986 33.333 0.00 0.00 36.83 1.82
1563 2143 8.293867 CGAGGTTCAACTTTGACCATAAATTTA 58.706 33.333 0.00 0.00 36.83 1.40
1564 2144 9.974980 GAGGTTCAACTTTGACCATAAATTTAA 57.025 29.630 1.21 0.00 36.83 1.52
1565 2145 9.758651 AGGTTCAACTTTGACCATAAATTTAAC 57.241 29.630 1.21 0.00 36.83 2.01
1566 2146 8.984764 GGTTCAACTTTGACCATAAATTTAACC 58.015 33.333 1.21 0.00 36.83 2.85
1567 2147 8.984764 GTTCAACTTTGACCATAAATTTAACCC 58.015 33.333 1.21 0.00 36.83 4.11
1568 2148 8.251383 TCAACTTTGACCATAAATTTAACCCA 57.749 30.769 1.21 0.00 31.01 4.51
1569 2149 8.145122 TCAACTTTGACCATAAATTTAACCCAC 58.855 33.333 1.21 0.00 31.01 4.61
1570 2150 6.683715 ACTTTGACCATAAATTTAACCCACG 58.316 36.000 1.21 0.00 0.00 4.94
1571 2151 6.490721 ACTTTGACCATAAATTTAACCCACGA 59.509 34.615 1.21 0.00 0.00 4.35
1572 2152 6.503589 TTGACCATAAATTTAACCCACGAG 57.496 37.500 1.21 0.00 0.00 4.18
1573 2153 5.806818 TGACCATAAATTTAACCCACGAGA 58.193 37.500 1.21 0.00 0.00 4.04
1574 2154 5.644636 TGACCATAAATTTAACCCACGAGAC 59.355 40.000 1.21 0.00 0.00 3.36
1575 2155 4.945543 ACCATAAATTTAACCCACGAGACC 59.054 41.667 1.21 0.00 0.00 3.85
1576 2156 4.034742 CCATAAATTTAACCCACGAGACCG 59.965 45.833 1.21 0.00 42.50 4.79
1577 2157 3.405823 AAATTTAACCCACGAGACCGA 57.594 42.857 0.00 0.00 39.50 4.69
1578 2158 2.375173 ATTTAACCCACGAGACCGAC 57.625 50.000 0.00 0.00 39.50 4.79
1579 2159 1.331214 TTTAACCCACGAGACCGACT 58.669 50.000 0.00 0.00 39.50 4.18
1580 2160 0.599558 TTAACCCACGAGACCGACTG 59.400 55.000 0.00 0.00 39.50 3.51
1581 2161 1.870055 TAACCCACGAGACCGACTGC 61.870 60.000 0.00 0.00 39.50 4.40
1582 2162 4.778415 CCCACGAGACCGACTGCG 62.778 72.222 0.00 0.00 39.50 5.18
1592 2172 4.812476 CGACTGCGGCGGGATCAA 62.812 66.667 14.26 0.00 0.00 2.57
1593 2173 2.435938 GACTGCGGCGGGATCAAA 60.436 61.111 14.26 0.00 0.00 2.69
1594 2174 2.033448 ACTGCGGCGGGATCAAAA 59.967 55.556 14.26 0.00 0.00 2.44
1595 2175 1.582610 GACTGCGGCGGGATCAAAAA 61.583 55.000 14.26 0.00 0.00 1.94
1596 2176 0.965363 ACTGCGGCGGGATCAAAAAT 60.965 50.000 14.26 0.00 0.00 1.82
1597 2177 0.173255 CTGCGGCGGGATCAAAAATT 59.827 50.000 9.78 0.00 0.00 1.82
1598 2178 1.403679 CTGCGGCGGGATCAAAAATTA 59.596 47.619 9.78 0.00 0.00 1.40
1599 2179 2.028130 TGCGGCGGGATCAAAAATTAT 58.972 42.857 9.78 0.00 0.00 1.28
1600 2180 3.215151 TGCGGCGGGATCAAAAATTATA 58.785 40.909 9.78 0.00 0.00 0.98
1601 2181 3.823873 TGCGGCGGGATCAAAAATTATAT 59.176 39.130 9.78 0.00 0.00 0.86
1602 2182 5.004448 TGCGGCGGGATCAAAAATTATATA 58.996 37.500 9.78 0.00 0.00 0.86
1603 2183 5.473846 TGCGGCGGGATCAAAAATTATATAA 59.526 36.000 9.78 0.00 0.00 0.98
1604 2184 6.151985 TGCGGCGGGATCAAAAATTATATAAT 59.848 34.615 9.78 1.91 0.00 1.28
1605 2185 7.033185 GCGGCGGGATCAAAAATTATATAATT 58.967 34.615 13.85 13.85 37.49 1.40
1606 2186 8.185505 GCGGCGGGATCAAAAATTATATAATTA 58.814 33.333 18.75 6.09 35.00 1.40
1659 2239 2.904866 TTTTTCGCCCGCTGCAGT 60.905 55.556 16.64 0.00 41.33 4.40
1660 2240 2.903547 TTTTTCGCCCGCTGCAGTC 61.904 57.895 16.64 6.83 41.33 3.51
1666 2246 4.379243 CCCGCTGCAGTCGGTCTT 62.379 66.667 32.75 0.00 45.09 3.01
1667 2247 3.114616 CCGCTGCAGTCGGTCTTG 61.115 66.667 29.69 12.82 41.85 3.02
1668 2248 2.356313 CGCTGCAGTCGGTCTTGT 60.356 61.111 16.64 0.00 0.00 3.16
1669 2249 1.956170 CGCTGCAGTCGGTCTTGTT 60.956 57.895 16.64 0.00 0.00 2.83
1670 2250 1.571460 GCTGCAGTCGGTCTTGTTG 59.429 57.895 16.64 0.00 0.00 3.33
1671 2251 0.880278 GCTGCAGTCGGTCTTGTTGA 60.880 55.000 16.64 0.00 0.00 3.18
1672 2252 1.800805 CTGCAGTCGGTCTTGTTGAT 58.199 50.000 5.25 0.00 0.00 2.57
1673 2253 2.146342 CTGCAGTCGGTCTTGTTGATT 58.854 47.619 5.25 0.00 0.00 2.57
1674 2254 3.325870 CTGCAGTCGGTCTTGTTGATTA 58.674 45.455 5.25 0.00 0.00 1.75
1675 2255 3.734463 TGCAGTCGGTCTTGTTGATTAA 58.266 40.909 0.00 0.00 0.00 1.40
1676 2256 4.130857 TGCAGTCGGTCTTGTTGATTAAA 58.869 39.130 0.00 0.00 0.00 1.52
1677 2257 4.759693 TGCAGTCGGTCTTGTTGATTAAAT 59.240 37.500 0.00 0.00 0.00 1.40
1678 2258 5.240623 TGCAGTCGGTCTTGTTGATTAAATT 59.759 36.000 0.00 0.00 0.00 1.82
1679 2259 6.428465 TGCAGTCGGTCTTGTTGATTAAATTA 59.572 34.615 0.00 0.00 0.00 1.40
1680 2260 7.041030 TGCAGTCGGTCTTGTTGATTAAATTAA 60.041 33.333 0.00 0.00 0.00 1.40
1681 2261 7.968405 GCAGTCGGTCTTGTTGATTAAATTAAT 59.032 33.333 0.00 0.00 0.00 1.40
1682 2262 9.277565 CAGTCGGTCTTGTTGATTAAATTAATG 57.722 33.333 2.58 0.00 0.00 1.90
1683 2263 8.458843 AGTCGGTCTTGTTGATTAAATTAATGG 58.541 33.333 2.58 0.00 0.00 3.16
1684 2264 8.241367 GTCGGTCTTGTTGATTAAATTAATGGT 58.759 33.333 2.58 0.00 0.00 3.55
1685 2265 8.455682 TCGGTCTTGTTGATTAAATTAATGGTC 58.544 33.333 2.58 0.00 0.00 4.02
1686 2266 8.240682 CGGTCTTGTTGATTAAATTAATGGTCA 58.759 33.333 2.58 0.00 0.00 4.02
1687 2267 9.921637 GGTCTTGTTGATTAAATTAATGGTCAA 57.078 29.630 2.58 0.04 0.00 3.18
1697 2277 9.995003 ATTAAATTAATGGTCAAAGTTGAAGCA 57.005 25.926 0.00 0.00 39.21 3.91
1698 2278 7.713764 AAATTAATGGTCAAAGTTGAAGCAC 57.286 32.000 0.00 0.00 39.21 4.40
1699 2279 3.354089 AATGGTCAAAGTTGAAGCACG 57.646 42.857 0.00 0.00 39.21 5.34
1700 2280 1.021202 TGGTCAAAGTTGAAGCACGG 58.979 50.000 0.00 0.00 39.21 4.94
1701 2281 1.305201 GGTCAAAGTTGAAGCACGGA 58.695 50.000 0.00 0.00 39.21 4.69
1702 2282 1.673920 GGTCAAAGTTGAAGCACGGAA 59.326 47.619 0.00 0.00 39.21 4.30
1703 2283 2.098443 GGTCAAAGTTGAAGCACGGAAA 59.902 45.455 0.00 0.00 39.21 3.13
1704 2284 3.105937 GTCAAAGTTGAAGCACGGAAAC 58.894 45.455 0.00 0.00 39.21 2.78
1705 2285 2.098443 TCAAAGTTGAAGCACGGAAACC 59.902 45.455 0.00 0.00 33.55 3.27
1706 2286 5.321388 TCAAAGTTGAAGCACGGAAACCG 62.321 47.826 8.67 8.67 43.00 4.44
1716 2296 4.736896 GGAAACCGAGGACGCGCT 62.737 66.667 5.73 0.00 38.29 5.92
1717 2297 2.180017 GAAACCGAGGACGCGCTA 59.820 61.111 5.73 0.00 38.29 4.26
1718 2298 1.226888 GAAACCGAGGACGCGCTAT 60.227 57.895 5.73 0.00 38.29 2.97
1719 2299 0.029834 GAAACCGAGGACGCGCTATA 59.970 55.000 5.73 0.00 38.29 1.31
1720 2300 0.672342 AAACCGAGGACGCGCTATAT 59.328 50.000 5.73 0.00 38.29 0.86
1721 2301 0.672342 AACCGAGGACGCGCTATATT 59.328 50.000 5.73 0.00 38.29 1.28
1722 2302 0.672342 ACCGAGGACGCGCTATATTT 59.328 50.000 5.73 0.00 38.29 1.40
1723 2303 1.068127 ACCGAGGACGCGCTATATTTT 59.932 47.619 5.73 0.00 38.29 1.82
1724 2304 1.455786 CCGAGGACGCGCTATATTTTG 59.544 52.381 5.73 0.00 38.29 2.44
1725 2305 1.455786 CGAGGACGCGCTATATTTTGG 59.544 52.381 5.73 0.00 0.00 3.28
1726 2306 2.750948 GAGGACGCGCTATATTTTGGA 58.249 47.619 5.73 0.00 0.00 3.53
1727 2307 3.128349 GAGGACGCGCTATATTTTGGAA 58.872 45.455 5.73 0.00 0.00 3.53
1728 2308 2.870411 AGGACGCGCTATATTTTGGAAC 59.130 45.455 5.73 0.00 0.00 3.62
1729 2309 2.348218 GGACGCGCTATATTTTGGAACG 60.348 50.000 5.73 0.00 0.00 3.95
1730 2310 1.595794 ACGCGCTATATTTTGGAACGG 59.404 47.619 5.73 0.00 0.00 4.44
1731 2311 1.862201 CGCGCTATATTTTGGAACGGA 59.138 47.619 5.56 0.00 0.00 4.69
1732 2312 2.096909 CGCGCTATATTTTGGAACGGAG 60.097 50.000 5.56 0.00 0.00 4.63
1733 2313 2.223377 GCGCTATATTTTGGAACGGAGG 59.777 50.000 0.00 0.00 0.00 4.30
1734 2314 2.806244 CGCTATATTTTGGAACGGAGGG 59.194 50.000 0.00 0.00 0.00 4.30
1735 2315 3.493699 CGCTATATTTTGGAACGGAGGGA 60.494 47.826 0.00 0.00 0.00 4.20
1736 2316 4.065789 GCTATATTTTGGAACGGAGGGAG 58.934 47.826 0.00 0.00 0.00 4.30
1737 2317 4.444449 GCTATATTTTGGAACGGAGGGAGT 60.444 45.833 0.00 0.00 0.00 3.85
1738 2318 5.221581 GCTATATTTTGGAACGGAGGGAGTA 60.222 44.000 0.00 0.00 0.00 2.59
1805 2385 5.505324 GCATCAGTTCATCAGTTAATGGAGC 60.505 44.000 0.00 0.00 0.00 4.70
2013 2595 7.901029 TCAGCCTTGGACTTAGATATAAGATG 58.099 38.462 13.92 0.00 0.00 2.90
2034 2616 5.073311 TGTGTAGATTTACTCTGCTGACC 57.927 43.478 0.00 0.00 37.48 4.02
2424 3006 6.389869 ACCATTTCCCTCTTGGTGATATCTAA 59.610 38.462 3.98 0.00 42.09 2.10
2457 3039 1.741028 TCCATCCTGGTTTCCACTCA 58.259 50.000 0.00 0.00 39.03 3.41
2463 3045 2.711009 TCCTGGTTTCCACTCACAGATT 59.289 45.455 0.00 0.00 0.00 2.40
2508 3090 0.038343 GCTTCGGAAATGGCAAAGCA 60.038 50.000 13.01 0.00 41.46 3.91
2526 3108 5.897377 AAGCACTGATGTTAATACCCAAC 57.103 39.130 0.00 0.00 0.00 3.77
2531 3113 6.586082 GCACTGATGTTAATACCCAACTTTTG 59.414 38.462 0.00 0.00 0.00 2.44
2532 3114 7.657336 CACTGATGTTAATACCCAACTTTTGT 58.343 34.615 0.00 0.00 0.00 2.83
2936 3518 1.822990 TGGACTGTCGGTACCATCTTC 59.177 52.381 13.54 0.90 0.00 2.87
3041 3623 8.175069 AGCAGTAAACAACATACATGATAAACG 58.825 33.333 0.00 0.00 0.00 3.60
3099 3681 5.796424 AAAGGTCAGAAAATGCAGATTGT 57.204 34.783 0.00 0.00 0.00 2.71
3101 3683 3.438087 AGGTCAGAAAATGCAGATTGTCG 59.562 43.478 0.00 0.00 31.72 4.35
3103 3685 4.398247 GTCAGAAAATGCAGATTGTCGAC 58.602 43.478 9.11 9.11 31.72 4.20
3128 3710 6.204688 CAGTCTTTGACACTTGGTTATGCTTA 59.795 38.462 0.46 0.00 34.60 3.09
3356 3938 7.227873 TCTTGTGTCTAATTTTGGTCATGGTA 58.772 34.615 0.00 0.00 0.00 3.25
3380 3962 3.553828 GCAGGTAGTTATGCCCAAGTA 57.446 47.619 0.00 0.00 36.41 2.24
3414 3996 4.818005 TGGTTGCTAGCATTATCATCTGTG 59.182 41.667 20.13 0.00 0.00 3.66
3453 4035 5.576774 GCTTTTGTTTTATGCTATCACACCC 59.423 40.000 0.00 0.00 0.00 4.61
3532 4114 4.651503 TGGAGAAAATGGCAAGGTTAAACA 59.348 37.500 0.00 0.00 0.00 2.83
3564 4146 2.552373 CCCTTCGGGTAAGCTTGTTTCT 60.552 50.000 9.86 0.00 38.25 2.52
3613 4195 0.941463 CGAGTCTGCAACGCTTCTGT 60.941 55.000 0.00 0.00 0.00 3.41
3928 4510 5.992217 GGTCTGTTCTCACTCTTACACAATT 59.008 40.000 0.00 0.00 0.00 2.32
3937 4519 7.331934 TCTCACTCTTACACAATTTCTGTATGC 59.668 37.037 0.00 0.00 36.10 3.14
3978 4560 3.408634 ACAATCTTACTTTGGTGACCGG 58.591 45.455 0.00 0.00 0.00 5.28
4103 4685 5.705441 CACTAGCTGTGTCTTTTTATTCCCA 59.295 40.000 0.00 0.00 41.53 4.37
4267 4849 0.402121 ACCAAGGCTGAACCCTCTTC 59.598 55.000 0.00 0.00 40.58 2.87
4337 4919 1.776662 TCCAGATCTACCCAACCTCG 58.223 55.000 0.00 0.00 0.00 4.63
4358 4940 2.362503 AGGACGACAGGCATCGGA 60.363 61.111 14.49 0.00 46.56 4.55
4373 4955 4.500116 GGAGTCGCCAGCTCGGTC 62.500 72.222 4.45 0.00 36.97 4.79
4442 5024 0.681733 ACAACTGCCATCAGACGACT 59.318 50.000 0.00 0.00 42.95 4.18
4487 5069 3.864983 TTTCCTCTCGGGGGTGGCT 62.865 63.158 0.00 0.00 35.33 4.75
4511 5093 3.323691 TCATGTTCTTCCCTTTCGAGACA 59.676 43.478 0.00 0.00 0.00 3.41
4520 5102 1.068954 CCTTTCGAGACAAAAGGCTGC 60.069 52.381 0.03 0.00 44.52 5.25
4579 5161 3.370527 GGCGGGTTATATCATAGCACCAT 60.371 47.826 0.00 0.00 0.00 3.55
4709 5299 0.855598 ATGATCCCCCATCCACTTGG 59.144 55.000 0.00 0.00 36.46 3.61
4714 5304 4.738998 CCCATCCACTTGGCGGCA 62.739 66.667 7.97 7.97 35.29 5.69
4807 5401 9.277783 CCTATACTTTGGACTTTGGAATGATAG 57.722 37.037 0.00 0.00 0.00 2.08
4823 5417 6.647067 GGAATGATAGTCGTTGGAATAAGGAG 59.353 42.308 0.00 0.00 0.00 3.69
4827 5421 7.883217 TGATAGTCGTTGGAATAAGGAGATAC 58.117 38.462 0.00 0.00 0.00 2.24
4828 5422 7.504574 TGATAGTCGTTGGAATAAGGAGATACA 59.495 37.037 0.00 0.00 0.00 2.29
4843 5437 2.375174 AGATACACCAGTTGGGCAGAAA 59.625 45.455 2.79 0.00 42.05 2.52
4846 5440 1.493022 ACACCAGTTGGGCAGAAACTA 59.507 47.619 2.79 0.00 42.05 2.24
4876 5470 4.907879 CCAGCTTGATGGTAAGAAATCC 57.092 45.455 0.00 0.00 35.47 3.01
4877 5471 4.530875 CCAGCTTGATGGTAAGAAATCCT 58.469 43.478 0.00 0.00 35.47 3.24
4885 5479 2.576191 TGGTAAGAAATCCTGGGACCTG 59.424 50.000 0.00 0.00 0.00 4.00
4887 5481 2.059756 AAGAAATCCTGGGACCTGGA 57.940 50.000 17.78 17.78 45.72 3.86
4895 5489 3.469859 TCCTGGGACCTGGAAATTCATA 58.530 45.455 13.84 0.00 40.35 2.15
5103 5697 1.723542 CAACGCTGACACTGACTGATC 59.276 52.381 0.00 0.00 0.00 2.92
5104 5698 0.961753 ACGCTGACACTGACTGATCA 59.038 50.000 0.00 0.00 0.00 2.92
5105 5699 1.336332 ACGCTGACACTGACTGATCAC 60.336 52.381 0.00 0.00 0.00 3.06
5107 5701 2.335752 GCTGACACTGACTGATCACTG 58.664 52.381 0.00 0.00 0.00 3.66
5108 5702 2.029560 GCTGACACTGACTGATCACTGA 60.030 50.000 0.00 0.00 0.00 3.41
5109 5703 3.368220 GCTGACACTGACTGATCACTGAT 60.368 47.826 0.00 0.00 0.00 2.90
5110 5704 4.174762 CTGACACTGACTGATCACTGATG 58.825 47.826 0.00 0.00 0.00 3.07
5111 5705 3.575687 TGACACTGACTGATCACTGATGT 59.424 43.478 0.00 0.00 0.00 3.06
5112 5706 3.922910 ACACTGACTGATCACTGATGTG 58.077 45.455 0.00 0.27 45.07 3.21
5113 5707 3.323115 ACACTGACTGATCACTGATGTGT 59.677 43.478 0.00 0.89 44.14 3.72
5114 5708 3.925299 CACTGACTGATCACTGATGTGTC 59.075 47.826 0.00 5.37 44.14 3.67
5137 5731 7.758076 TGTCGTCCTATTGACAGTTACTTAATG 59.242 37.037 0.00 0.00 44.71 1.90
5139 5733 8.959548 TCGTCCTATTGACAGTTACTTAATGTA 58.040 33.333 0.00 0.00 44.71 2.29
5169 5763 1.272490 ACTGTTGCTCTGCTTACGCTA 59.728 47.619 0.00 0.00 36.97 4.26
5177 5771 3.121194 GCTCTGCTTACGCTAATCAATCG 60.121 47.826 0.00 0.00 36.97 3.34
5188 5782 1.442769 AATCAATCGACGCTGCAAGT 58.557 45.000 0.00 0.00 35.30 3.16
5189 5783 1.002366 ATCAATCGACGCTGCAAGTC 58.998 50.000 10.89 10.89 35.30 3.01
5202 5799 3.120060 GCTGCAAGTCGAATGTTTCAGAT 60.120 43.478 7.09 0.00 35.30 2.90
5206 5803 4.436584 GCAAGTCGAATGTTTCAGATCCAG 60.437 45.833 0.00 0.00 0.00 3.86
5210 5807 4.095483 GTCGAATGTTTCAGATCCAGCATT 59.905 41.667 0.00 0.00 0.00 3.56
5213 5810 5.503683 CGAATGTTTCAGATCCAGCATTCTC 60.504 44.000 17.30 2.62 39.67 2.87
5218 5815 0.473326 AGATCCAGCATTCTCCCAGC 59.527 55.000 0.00 0.00 0.00 4.85
5222 5819 1.144716 CAGCATTCTCCCAGCGCTA 59.855 57.895 10.99 0.00 0.00 4.26
5229 5834 0.755327 TCTCCCAGCGCTATAGCACA 60.755 55.000 23.99 0.00 42.21 4.57
5233 5838 0.305922 CCAGCGCTATAGCACAAAGC 59.694 55.000 23.99 17.66 46.19 3.51
5258 5863 7.581213 ACAGTATTGTGAAACCAAGAAATGA 57.419 32.000 0.00 0.00 35.83 2.57
5259 5864 8.006298 ACAGTATTGTGAAACCAAGAAATGAA 57.994 30.769 0.00 0.00 35.83 2.57
5261 5866 9.480053 CAGTATTGTGAAACCAAGAAATGAAAT 57.520 29.630 0.00 0.00 34.36 2.17
5304 5914 2.288948 TGGGCAACACATTTTCTGATGC 60.289 45.455 0.00 0.00 39.74 3.91
5305 5915 2.028748 GGGCAACACATTTTCTGATGCT 60.029 45.455 0.00 0.00 34.87 3.79
5306 5916 3.193267 GGGCAACACATTTTCTGATGCTA 59.807 43.478 0.00 0.00 34.87 3.49
5307 5917 4.418392 GGCAACACATTTTCTGATGCTAG 58.582 43.478 0.00 0.00 34.87 3.42
5308 5918 4.156556 GGCAACACATTTTCTGATGCTAGA 59.843 41.667 0.00 0.00 34.87 2.43
5327 5937 0.686112 ACTAGACTCCAGCCTCTGCC 60.686 60.000 0.00 0.00 38.69 4.85
5340 5953 3.437795 CTGCCGGGCTGCTTTCAG 61.438 66.667 21.46 2.99 43.16 3.02
5352 5968 4.935352 CTGCTTTCAGCTAGAGTAGGAT 57.065 45.455 0.00 0.00 42.97 3.24
5373 5989 2.025767 ATAGCTCTGCCTGCAGGACG 62.026 60.000 37.21 24.30 43.75 4.79
5409 6025 2.228822 CGATTTTTCCACCTTCCACTGG 59.771 50.000 0.00 0.00 0.00 4.00
5417 6033 2.222027 CACCTTCCACTGGAGTTTGAC 58.778 52.381 0.00 0.00 31.21 3.18
5425 6041 1.940613 ACTGGAGTTTGACGTTGAAGC 59.059 47.619 0.00 0.00 0.00 3.86
5445 6061 1.696832 GATCGCTTTCCGTGGTGCTC 61.697 60.000 0.00 0.00 38.35 4.26
5453 6069 0.321564 TCCGTGGTGCTCATTTCCTG 60.322 55.000 0.00 0.00 0.00 3.86
5466 6082 3.056393 TCATTTCCTGGCTGAATGCTTTG 60.056 43.478 10.49 0.00 42.39 2.77
5467 6083 0.604578 TTCCTGGCTGAATGCTTTGC 59.395 50.000 0.00 0.00 42.39 3.68
5485 6101 2.351276 CCCGGGTGGAAACTGGAG 59.649 66.667 14.18 0.00 36.43 3.86
5540 6156 1.455217 ATGGCTCTGCTGATTGGCC 60.455 57.895 13.44 13.44 42.73 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.799213 CCTCAGTTCAGAACCTAAGACAAT 58.201 41.667 9.85 0.00 0.00 2.71
1 2 4.503296 GCCTCAGTTCAGAACCTAAGACAA 60.503 45.833 9.85 0.00 0.00 3.18
2 3 3.006967 GCCTCAGTTCAGAACCTAAGACA 59.993 47.826 9.85 0.00 0.00 3.41
3 4 3.006967 TGCCTCAGTTCAGAACCTAAGAC 59.993 47.826 9.85 0.00 0.00 3.01
4 5 3.006967 GTGCCTCAGTTCAGAACCTAAGA 59.993 47.826 9.85 2.92 0.00 2.10
5 6 3.007398 AGTGCCTCAGTTCAGAACCTAAG 59.993 47.826 9.85 5.14 0.00 2.18
6 7 2.972713 AGTGCCTCAGTTCAGAACCTAA 59.027 45.455 9.85 0.00 0.00 2.69
7 8 2.609747 AGTGCCTCAGTTCAGAACCTA 58.390 47.619 9.85 0.00 0.00 3.08
8 9 1.428869 AGTGCCTCAGTTCAGAACCT 58.571 50.000 9.85 0.00 0.00 3.50
9 10 2.147150 GAAGTGCCTCAGTTCAGAACC 58.853 52.381 9.85 0.00 41.76 3.62
10 11 2.838736 TGAAGTGCCTCAGTTCAGAAC 58.161 47.619 11.72 5.00 45.28 3.01
15 16 2.289002 CACAGTTGAAGTGCCTCAGTTC 59.711 50.000 0.00 7.29 42.29 3.01
16 17 2.292267 CACAGTTGAAGTGCCTCAGTT 58.708 47.619 0.00 0.00 0.00 3.16
17 18 1.210478 ACACAGTTGAAGTGCCTCAGT 59.790 47.619 0.00 0.00 40.59 3.41
18 19 1.959042 ACACAGTTGAAGTGCCTCAG 58.041 50.000 0.00 0.00 40.59 3.35
19 20 2.418368 AACACAGTTGAAGTGCCTCA 57.582 45.000 0.00 0.00 40.59 3.86
20 21 3.189287 CCATAACACAGTTGAAGTGCCTC 59.811 47.826 0.00 0.00 40.59 4.70
21 22 3.149196 CCATAACACAGTTGAAGTGCCT 58.851 45.455 0.00 0.00 40.59 4.75
22 23 3.146066 TCCATAACACAGTTGAAGTGCC 58.854 45.455 0.00 0.00 40.59 5.01
23 24 3.815401 ACTCCATAACACAGTTGAAGTGC 59.185 43.478 0.00 0.00 40.59 4.40
24 25 8.820933 CATATACTCCATAACACAGTTGAAGTG 58.179 37.037 0.00 0.00 42.56 3.16
25 26 8.540388 ACATATACTCCATAACACAGTTGAAGT 58.460 33.333 0.00 0.00 0.00 3.01
26 27 8.948631 ACATATACTCCATAACACAGTTGAAG 57.051 34.615 0.00 0.00 0.00 3.02
27 28 9.161629 CAACATATACTCCATAACACAGTTGAA 57.838 33.333 0.00 0.00 34.92 2.69
28 29 8.318412 ACAACATATACTCCATAACACAGTTGA 58.682 33.333 0.00 0.00 36.33 3.18
29 30 8.492673 ACAACATATACTCCATAACACAGTTG 57.507 34.615 0.00 0.00 37.89 3.16
30 31 9.595823 GTACAACATATACTCCATAACACAGTT 57.404 33.333 0.00 0.00 0.00 3.16
31 32 8.978472 AGTACAACATATACTCCATAACACAGT 58.022 33.333 0.00 0.00 0.00 3.55
39 40 9.830186 AAGAGGATAGTACAACATATACTCCAT 57.170 33.333 7.97 0.00 39.33 3.41
40 41 9.078990 CAAGAGGATAGTACAACATATACTCCA 57.921 37.037 7.97 0.00 39.33 3.86
41 42 8.030106 GCAAGAGGATAGTACAACATATACTCC 58.970 40.741 7.97 0.00 39.33 3.85
42 43 8.577296 TGCAAGAGGATAGTACAACATATACTC 58.423 37.037 4.59 4.59 38.96 2.59
43 44 8.478775 TGCAAGAGGATAGTACAACATATACT 57.521 34.615 0.00 0.00 36.79 2.12
44 45 9.197694 CTTGCAAGAGGATAGTACAACATATAC 57.802 37.037 22.31 0.00 0.00 1.47
45 46 8.367911 CCTTGCAAGAGGATAGTACAACATATA 58.632 37.037 28.05 0.00 39.25 0.86
46 47 7.147479 ACCTTGCAAGAGGATAGTACAACATAT 60.147 37.037 28.05 0.00 39.25 1.78
47 48 6.156256 ACCTTGCAAGAGGATAGTACAACATA 59.844 38.462 28.05 0.00 39.25 2.29
48 49 5.045578 ACCTTGCAAGAGGATAGTACAACAT 60.046 40.000 28.05 0.00 39.25 2.71
52 53 4.777896 AGAACCTTGCAAGAGGATAGTACA 59.222 41.667 28.05 0.00 39.25 2.90
54 55 4.406003 GGAGAACCTTGCAAGAGGATAGTA 59.594 45.833 28.05 0.00 39.25 1.82
75 76 9.565090 CATGAAAATATGAGGTTCTAGAATGGA 57.435 33.333 8.75 0.00 0.00 3.41
84 85 8.230472 ACTTGGATCATGAAAATATGAGGTTC 57.770 34.615 0.00 0.00 40.16 3.62
96 97 5.993055 TCTTCAGCATACTTGGATCATGAA 58.007 37.500 0.00 0.00 0.00 2.57
104 105 8.218338 AGTATCATTTTCTTCAGCATACTTGG 57.782 34.615 0.00 0.00 0.00 3.61
362 890 2.434185 TGTGATGACTTCGGCGCC 60.434 61.111 19.07 19.07 0.00 6.53
363 891 2.778679 GTGTGATGACTTCGGCGC 59.221 61.111 0.00 0.00 0.00 6.53
364 892 3.071459 GCGTGTGATGACTTCGGCG 62.071 63.158 0.00 0.00 0.00 6.46
368 896 0.729116 CATGGGCGTGTGATGACTTC 59.271 55.000 0.00 0.00 0.00 3.01
396 924 4.382320 TCAACGCCGGGGTACAGC 62.382 66.667 25.95 0.00 0.00 4.40
427 955 1.315257 CCGTGGAGCTTGGAATTGGG 61.315 60.000 0.00 0.00 0.00 4.12
432 960 2.528127 TCCCCGTGGAGCTTGGAA 60.528 61.111 0.00 0.00 35.03 3.53
433 961 3.319198 GTCCCCGTGGAGCTTGGA 61.319 66.667 0.00 0.00 42.85 3.53
434 962 4.760047 CGTCCCCGTGGAGCTTGG 62.760 72.222 0.00 0.00 42.85 3.61
456 984 2.789715 GGTATGACCGGACCGTCCC 61.790 68.421 9.46 0.00 31.13 4.46
457 985 2.810403 GGTATGACCGGACCGTCC 59.190 66.667 9.46 7.59 31.35 4.79
482 1010 2.046892 ATGCGATATGGAGCCCGC 60.047 61.111 0.00 0.00 46.82 6.13
484 1012 1.731720 GAAGATGCGATATGGAGCCC 58.268 55.000 0.00 0.00 0.00 5.19
485 1013 1.354040 CGAAGATGCGATATGGAGCC 58.646 55.000 0.00 0.00 0.00 4.70
486 1014 0.718343 GCGAAGATGCGATATGGAGC 59.282 55.000 0.00 0.00 0.00 4.70
487 1015 2.070262 TGCGAAGATGCGATATGGAG 57.930 50.000 0.00 0.00 37.81 3.86
488 1016 2.232208 AGATGCGAAGATGCGATATGGA 59.768 45.455 0.00 0.00 37.81 3.41
489 1017 2.602211 GAGATGCGAAGATGCGATATGG 59.398 50.000 0.00 0.00 37.81 2.74
493 1021 0.678395 AGGAGATGCGAAGATGCGAT 59.322 50.000 0.00 0.00 37.81 4.58
494 1022 0.461548 AAGGAGATGCGAAGATGCGA 59.538 50.000 0.00 0.00 37.81 5.10
516 1044 2.293934 GGATGGATGGGGGAGGGA 59.706 66.667 0.00 0.00 0.00 4.20
525 1061 2.516930 GCGGTGTGGGGATGGATG 60.517 66.667 0.00 0.00 0.00 3.51
526 1062 3.014538 TGCGGTGTGGGGATGGAT 61.015 61.111 0.00 0.00 0.00 3.41
527 1063 3.716195 CTGCGGTGTGGGGATGGA 61.716 66.667 0.00 0.00 0.00 3.41
552 1088 4.752879 TCGTAGGTTGGCAGCGGC 62.753 66.667 0.00 0.00 40.13 6.53
591 1127 0.599204 TTTGTCTCCTCCGACGTTGC 60.599 55.000 0.00 0.00 36.71 4.17
658 1194 2.506472 GCGAGGAGGGATGGGAAC 59.494 66.667 0.00 0.00 0.00 3.62
663 1199 0.536006 GAAATGGGCGAGGAGGGATG 60.536 60.000 0.00 0.00 0.00 3.51
748 1296 1.135859 GTGCGTTTCTTGGATCTGCAG 60.136 52.381 7.63 7.63 0.00 4.41
800 1348 1.676006 GCGAGAGGAAGAAGAGGAGAG 59.324 57.143 0.00 0.00 0.00 3.20
805 1353 1.738700 GCTTGGCGAGAGGAAGAAGAG 60.739 57.143 5.76 0.00 0.00 2.85
874 1422 3.821033 AGATCCAAAACAAGAAACGGAGG 59.179 43.478 0.00 0.00 0.00 4.30
876 1424 4.714632 AGAGATCCAAAACAAGAAACGGA 58.285 39.130 0.00 0.00 0.00 4.69
1088 1651 3.403057 CAACTCGCCACCGACACG 61.403 66.667 0.00 0.00 38.82 4.49
1097 1660 1.782028 AAGCAAACGGTCAACTCGCC 61.782 55.000 0.00 0.00 0.00 5.54
1200 1763 3.801114 ACAAGAACCAAAGCAAAGTCC 57.199 42.857 0.00 0.00 0.00 3.85
1319 1899 0.868406 GCAAGCGCACTTTCTACTGT 59.132 50.000 11.47 0.00 38.36 3.55
1375 1955 2.111384 AGGAGTGTTAGGCATCGATGT 58.889 47.619 25.47 10.33 0.00 3.06
1407 1987 2.682352 CACACACACACAAACAGGATGA 59.318 45.455 0.00 0.00 39.69 2.92
1418 1998 4.461992 AAGCGTTAATACACACACACAC 57.538 40.909 0.00 0.00 0.00 3.82
1419 1999 5.754406 ACTTAAGCGTTAATACACACACACA 59.246 36.000 1.29 0.00 0.00 3.72
1438 2018 8.911918 TTTCTACTAATGTCCAAGCAACTTAA 57.088 30.769 0.00 0.00 0.00 1.85
1500 2080 4.065789 GCTATATTTTGGAACGGAGGGAG 58.934 47.826 0.00 0.00 0.00 4.30
1501 2081 3.493699 CGCTATATTTTGGAACGGAGGGA 60.494 47.826 0.00 0.00 0.00 4.20
1502 2082 2.806244 CGCTATATTTTGGAACGGAGGG 59.194 50.000 0.00 0.00 0.00 4.30
1503 2083 2.223377 GCGCTATATTTTGGAACGGAGG 59.777 50.000 0.00 0.00 0.00 4.30
1504 2084 2.096909 CGCGCTATATTTTGGAACGGAG 60.097 50.000 5.56 0.00 0.00 4.63
1505 2085 1.862201 CGCGCTATATTTTGGAACGGA 59.138 47.619 5.56 0.00 0.00 4.69
1506 2086 1.659211 GCGCGCTATATTTTGGAACGG 60.659 52.381 26.67 0.00 0.00 4.44
1507 2087 1.658968 GCGCGCTATATTTTGGAACG 58.341 50.000 26.67 0.00 0.00 3.95
1508 2088 1.334689 GGGCGCGCTATATTTTGGAAC 60.335 52.381 32.29 8.93 0.00 3.62
1509 2089 0.948678 GGGCGCGCTATATTTTGGAA 59.051 50.000 32.29 0.00 0.00 3.53
1510 2090 0.179043 TGGGCGCGCTATATTTTGGA 60.179 50.000 32.29 0.00 0.00 3.53
1511 2091 0.040425 GTGGGCGCGCTATATTTTGG 60.040 55.000 32.29 0.00 0.00 3.28
1512 2092 0.384230 CGTGGGCGCGCTATATTTTG 60.384 55.000 32.29 9.06 0.00 2.44
1513 2093 1.938861 CGTGGGCGCGCTATATTTT 59.061 52.632 32.29 0.00 0.00 1.82
1514 2094 3.637714 CGTGGGCGCGCTATATTT 58.362 55.556 32.29 0.00 0.00 1.40
1524 2104 3.788766 CCTCGAAAAGCGTGGGCG 61.789 66.667 0.00 0.00 46.89 6.13
1528 2108 1.597663 AGTTGAACCTCGAAAAGCGTG 59.402 47.619 0.00 0.00 41.80 5.34
1529 2109 1.949465 AGTTGAACCTCGAAAAGCGT 58.051 45.000 0.00 0.00 41.80 5.07
1530 2110 3.035942 CAAAGTTGAACCTCGAAAAGCG 58.964 45.455 0.00 0.00 42.69 4.68
1531 2111 4.035684 GTCAAAGTTGAACCTCGAAAAGC 58.964 43.478 0.00 0.00 39.21 3.51
1532 2112 4.095782 TGGTCAAAGTTGAACCTCGAAAAG 59.904 41.667 6.62 0.00 44.20 2.27
1533 2113 4.011023 TGGTCAAAGTTGAACCTCGAAAA 58.989 39.130 6.62 0.00 44.20 2.29
1534 2114 3.611970 TGGTCAAAGTTGAACCTCGAAA 58.388 40.909 6.62 0.00 44.20 3.46
1535 2115 3.269538 TGGTCAAAGTTGAACCTCGAA 57.730 42.857 6.62 0.00 44.20 3.71
1536 2116 2.992124 TGGTCAAAGTTGAACCTCGA 57.008 45.000 6.62 0.00 44.20 4.04
1537 2117 5.682943 TTTATGGTCAAAGTTGAACCTCG 57.317 39.130 6.62 0.00 44.20 4.63
1538 2118 9.974980 TTAAATTTATGGTCAAAGTTGAACCTC 57.025 29.630 6.62 0.00 44.20 3.85
1539 2119 9.758651 GTTAAATTTATGGTCAAAGTTGAACCT 57.241 29.630 6.62 0.00 44.20 3.50
1540 2120 8.984764 GGTTAAATTTATGGTCAAAGTTGAACC 58.015 33.333 6.62 6.25 44.20 3.62
1541 2121 8.984764 GGGTTAAATTTATGGTCAAAGTTGAAC 58.015 33.333 1.98 1.98 45.04 3.18
1542 2122 8.705594 TGGGTTAAATTTATGGTCAAAGTTGAA 58.294 29.630 0.00 0.00 39.21 2.69
1543 2123 8.145122 GTGGGTTAAATTTATGGTCAAAGTTGA 58.855 33.333 0.00 0.00 34.20 3.18
1544 2124 7.115663 CGTGGGTTAAATTTATGGTCAAAGTTG 59.884 37.037 0.00 0.00 29.44 3.16
1545 2125 7.014422 TCGTGGGTTAAATTTATGGTCAAAGTT 59.986 33.333 0.00 0.00 31.36 2.66
1546 2126 6.490721 TCGTGGGTTAAATTTATGGTCAAAGT 59.509 34.615 0.00 0.00 0.00 2.66
1547 2127 6.915349 TCGTGGGTTAAATTTATGGTCAAAG 58.085 36.000 0.00 0.00 0.00 2.77
1548 2128 6.715718 TCTCGTGGGTTAAATTTATGGTCAAA 59.284 34.615 0.00 0.00 0.00 2.69
1549 2129 6.149807 GTCTCGTGGGTTAAATTTATGGTCAA 59.850 38.462 0.00 0.00 0.00 3.18
1550 2130 5.644636 GTCTCGTGGGTTAAATTTATGGTCA 59.355 40.000 0.00 0.00 0.00 4.02
1551 2131 5.065602 GGTCTCGTGGGTTAAATTTATGGTC 59.934 44.000 0.00 0.00 0.00 4.02
1552 2132 4.945543 GGTCTCGTGGGTTAAATTTATGGT 59.054 41.667 0.00 0.00 0.00 3.55
1553 2133 4.034742 CGGTCTCGTGGGTTAAATTTATGG 59.965 45.833 0.00 0.00 0.00 2.74
1554 2134 4.871557 TCGGTCTCGTGGGTTAAATTTATG 59.128 41.667 0.00 0.00 37.69 1.90
1555 2135 4.872124 GTCGGTCTCGTGGGTTAAATTTAT 59.128 41.667 0.00 0.00 37.69 1.40
1556 2136 4.021192 AGTCGGTCTCGTGGGTTAAATTTA 60.021 41.667 0.00 0.00 37.69 1.40
1557 2137 3.069289 GTCGGTCTCGTGGGTTAAATTT 58.931 45.455 0.00 0.00 37.69 1.82
1558 2138 2.301009 AGTCGGTCTCGTGGGTTAAATT 59.699 45.455 0.00 0.00 37.69 1.82
1559 2139 1.897802 AGTCGGTCTCGTGGGTTAAAT 59.102 47.619 0.00 0.00 37.69 1.40
1560 2140 1.000060 CAGTCGGTCTCGTGGGTTAAA 60.000 52.381 0.00 0.00 37.69 1.52
1561 2141 0.599558 CAGTCGGTCTCGTGGGTTAA 59.400 55.000 0.00 0.00 37.69 2.01
1562 2142 1.870055 GCAGTCGGTCTCGTGGGTTA 61.870 60.000 0.00 0.00 37.69 2.85
1563 2143 3.048602 CAGTCGGTCTCGTGGGTT 58.951 61.111 0.00 0.00 37.69 4.11
1564 2144 3.681835 GCAGTCGGTCTCGTGGGT 61.682 66.667 0.00 0.00 37.69 4.51
1565 2145 4.778415 CGCAGTCGGTCTCGTGGG 62.778 72.222 0.00 0.00 37.69 4.61
1575 2155 4.812476 TTGATCCCGCCGCAGTCG 62.812 66.667 0.00 0.00 0.00 4.18
1576 2156 1.582610 TTTTTGATCCCGCCGCAGTC 61.583 55.000 0.00 0.00 0.00 3.51
1577 2157 0.965363 ATTTTTGATCCCGCCGCAGT 60.965 50.000 0.00 0.00 0.00 4.40
1578 2158 0.173255 AATTTTTGATCCCGCCGCAG 59.827 50.000 0.00 0.00 0.00 5.18
1579 2159 1.464734 TAATTTTTGATCCCGCCGCA 58.535 45.000 0.00 0.00 0.00 5.69
1580 2160 2.793278 ATAATTTTTGATCCCGCCGC 57.207 45.000 0.00 0.00 0.00 6.53
1651 2231 1.956170 AACAAGACCGACTGCAGCG 60.956 57.895 15.27 17.81 0.00 5.18
1652 2232 0.880278 TCAACAAGACCGACTGCAGC 60.880 55.000 15.27 5.81 0.00 5.25
1653 2233 1.800805 ATCAACAAGACCGACTGCAG 58.199 50.000 13.48 13.48 0.00 4.41
1654 2234 2.254546 AATCAACAAGACCGACTGCA 57.745 45.000 0.00 0.00 0.00 4.41
1655 2235 4.742438 TTTAATCAACAAGACCGACTGC 57.258 40.909 0.00 0.00 0.00 4.40
1656 2236 9.277565 CATTAATTTAATCAACAAGACCGACTG 57.722 33.333 0.00 0.00 0.00 3.51
1657 2237 8.458843 CCATTAATTTAATCAACAAGACCGACT 58.541 33.333 0.00 0.00 0.00 4.18
1658 2238 8.241367 ACCATTAATTTAATCAACAAGACCGAC 58.759 33.333 0.00 0.00 0.00 4.79
1659 2239 8.343168 ACCATTAATTTAATCAACAAGACCGA 57.657 30.769 0.00 0.00 0.00 4.69
1660 2240 8.240682 TGACCATTAATTTAATCAACAAGACCG 58.759 33.333 0.00 0.00 0.00 4.79
1661 2241 9.921637 TTGACCATTAATTTAATCAACAAGACC 57.078 29.630 0.00 0.00 0.00 3.85
1671 2251 9.995003 TGCTTCAACTTTGACCATTAATTTAAT 57.005 25.926 0.00 0.00 36.83 1.40
1672 2252 9.255304 GTGCTTCAACTTTGACCATTAATTTAA 57.745 29.630 0.00 0.00 36.83 1.52
1673 2253 7.593273 CGTGCTTCAACTTTGACCATTAATTTA 59.407 33.333 0.00 0.00 36.83 1.40
1674 2254 6.420604 CGTGCTTCAACTTTGACCATTAATTT 59.579 34.615 0.00 0.00 36.83 1.82
1675 2255 5.920273 CGTGCTTCAACTTTGACCATTAATT 59.080 36.000 0.00 0.00 36.83 1.40
1676 2256 5.460646 CGTGCTTCAACTTTGACCATTAAT 58.539 37.500 0.00 0.00 36.83 1.40
1677 2257 4.261405 CCGTGCTTCAACTTTGACCATTAA 60.261 41.667 0.00 0.00 36.83 1.40
1678 2258 3.252215 CCGTGCTTCAACTTTGACCATTA 59.748 43.478 0.00 0.00 36.83 1.90
1679 2259 2.034558 CCGTGCTTCAACTTTGACCATT 59.965 45.455 0.00 0.00 36.83 3.16
1680 2260 1.608590 CCGTGCTTCAACTTTGACCAT 59.391 47.619 0.00 0.00 36.83 3.55
1681 2261 1.021202 CCGTGCTTCAACTTTGACCA 58.979 50.000 0.00 0.00 36.83 4.02
1682 2262 1.305201 TCCGTGCTTCAACTTTGACC 58.695 50.000 0.00 0.00 36.83 4.02
1683 2263 3.105937 GTTTCCGTGCTTCAACTTTGAC 58.894 45.455 0.00 0.00 36.83 3.18
1684 2264 2.098443 GGTTTCCGTGCTTCAACTTTGA 59.902 45.455 0.00 0.00 34.92 2.69
1685 2265 2.459934 GGTTTCCGTGCTTCAACTTTG 58.540 47.619 0.00 0.00 0.00 2.77
1686 2266 1.064952 CGGTTTCCGTGCTTCAACTTT 59.935 47.619 0.00 0.00 42.73 2.66
1687 2267 0.661020 CGGTTTCCGTGCTTCAACTT 59.339 50.000 0.00 0.00 42.73 2.66
1688 2268 2.317230 CGGTTTCCGTGCTTCAACT 58.683 52.632 0.00 0.00 42.73 3.16
1689 2269 4.914291 CGGTTTCCGTGCTTCAAC 57.086 55.556 0.00 0.00 42.73 3.18
1699 2279 2.624437 ATAGCGCGTCCTCGGTTTCC 62.624 60.000 8.43 0.00 40.82 3.13
1700 2280 0.029834 TATAGCGCGTCCTCGGTTTC 59.970 55.000 8.43 0.00 40.82 2.78
1701 2281 0.672342 ATATAGCGCGTCCTCGGTTT 59.328 50.000 8.43 0.00 40.82 3.27
1702 2282 0.672342 AATATAGCGCGTCCTCGGTT 59.328 50.000 8.43 0.00 40.82 4.44
1703 2283 0.672342 AAATATAGCGCGTCCTCGGT 59.328 50.000 8.43 0.00 43.07 4.69
1704 2284 1.455786 CAAAATATAGCGCGTCCTCGG 59.544 52.381 8.43 0.00 37.56 4.63
1705 2285 1.455786 CCAAAATATAGCGCGTCCTCG 59.544 52.381 8.43 0.00 40.37 4.63
1706 2286 2.750948 TCCAAAATATAGCGCGTCCTC 58.249 47.619 8.43 0.00 0.00 3.71
1707 2287 2.870411 GTTCCAAAATATAGCGCGTCCT 59.130 45.455 8.43 0.00 0.00 3.85
1708 2288 2.348218 CGTTCCAAAATATAGCGCGTCC 60.348 50.000 8.43 0.00 0.00 4.79
1709 2289 2.348218 CCGTTCCAAAATATAGCGCGTC 60.348 50.000 8.43 0.00 0.00 5.19
1710 2290 1.595794 CCGTTCCAAAATATAGCGCGT 59.404 47.619 8.43 0.00 0.00 6.01
1711 2291 1.862201 TCCGTTCCAAAATATAGCGCG 59.138 47.619 0.00 0.00 0.00 6.86
1712 2292 2.223377 CCTCCGTTCCAAAATATAGCGC 59.777 50.000 0.00 0.00 0.00 5.92
1713 2293 2.806244 CCCTCCGTTCCAAAATATAGCG 59.194 50.000 0.00 0.00 0.00 4.26
1714 2294 4.065789 CTCCCTCCGTTCCAAAATATAGC 58.934 47.826 0.00 0.00 0.00 2.97
1715 2295 5.291905 ACTCCCTCCGTTCCAAAATATAG 57.708 43.478 0.00 0.00 0.00 1.31
1716 2296 6.785963 AGATACTCCCTCCGTTCCAAAATATA 59.214 38.462 0.00 0.00 0.00 0.86
1717 2297 5.607171 AGATACTCCCTCCGTTCCAAAATAT 59.393 40.000 0.00 0.00 0.00 1.28
1718 2298 4.966805 AGATACTCCCTCCGTTCCAAAATA 59.033 41.667 0.00 0.00 0.00 1.40
1719 2299 3.780850 AGATACTCCCTCCGTTCCAAAAT 59.219 43.478 0.00 0.00 0.00 1.82
1720 2300 3.055385 CAGATACTCCCTCCGTTCCAAAA 60.055 47.826 0.00 0.00 0.00 2.44
1721 2301 2.500098 CAGATACTCCCTCCGTTCCAAA 59.500 50.000 0.00 0.00 0.00 3.28
1722 2302 2.108168 CAGATACTCCCTCCGTTCCAA 58.892 52.381 0.00 0.00 0.00 3.53
1723 2303 1.286849 TCAGATACTCCCTCCGTTCCA 59.713 52.381 0.00 0.00 0.00 3.53
1724 2304 2.068834 TCAGATACTCCCTCCGTTCC 57.931 55.000 0.00 0.00 0.00 3.62
1725 2305 4.399934 GGATATCAGATACTCCCTCCGTTC 59.600 50.000 4.83 0.00 0.00 3.95
1726 2306 4.202684 TGGATATCAGATACTCCCTCCGTT 60.203 45.833 4.83 0.00 0.00 4.44
1727 2307 3.333980 TGGATATCAGATACTCCCTCCGT 59.666 47.826 4.83 0.00 0.00 4.69
1728 2308 3.969553 TGGATATCAGATACTCCCTCCG 58.030 50.000 4.83 0.00 0.00 4.63
1729 2309 4.158764 CGTTGGATATCAGATACTCCCTCC 59.841 50.000 4.83 7.76 0.00 4.30
1730 2310 4.381079 GCGTTGGATATCAGATACTCCCTC 60.381 50.000 4.83 0.06 0.00 4.30
1731 2311 3.511934 GCGTTGGATATCAGATACTCCCT 59.488 47.826 4.83 0.00 0.00 4.20
1732 2312 3.258372 TGCGTTGGATATCAGATACTCCC 59.742 47.826 4.83 7.16 0.00 4.30
1733 2313 4.521130 TGCGTTGGATATCAGATACTCC 57.479 45.455 4.83 10.06 0.00 3.85
1734 2314 6.159293 TCAATGCGTTGGATATCAGATACTC 58.841 40.000 18.37 0.00 35.99 2.59
1735 2315 6.101650 TCAATGCGTTGGATATCAGATACT 57.898 37.500 18.37 0.00 35.99 2.12
1736 2316 6.674037 GCATCAATGCGTTGGATATCAGATAC 60.674 42.308 18.37 0.00 44.67 2.24
1737 2317 5.352293 GCATCAATGCGTTGGATATCAGATA 59.648 40.000 18.37 0.00 44.67 1.98
1738 2318 4.155462 GCATCAATGCGTTGGATATCAGAT 59.845 41.667 18.37 0.00 44.67 2.90
1785 2365 3.310774 CCGCTCCATTAACTGATGAACTG 59.689 47.826 0.00 0.00 0.00 3.16
1805 2385 1.659794 CCACACTTTTCTTGCCCCG 59.340 57.895 0.00 0.00 0.00 5.73
1839 2419 5.712152 AATTGTAAGAAAAGGACAGGCAG 57.288 39.130 0.00 0.00 0.00 4.85
1912 2494 7.552050 AACATTTGTATTTTCCATTCCCTCA 57.448 32.000 0.00 0.00 0.00 3.86
2013 2595 4.106197 CGGTCAGCAGAGTAAATCTACAC 58.894 47.826 0.00 0.00 36.10 2.90
2424 3006 5.524971 CAGGATGGATTGCAACATTATGT 57.475 39.130 0.00 0.00 0.00 2.29
2457 3039 5.435686 TGGTAACCATAAGCAGAATCTGT 57.564 39.130 12.29 0.00 33.43 3.41
2463 3045 4.634012 ACTGTTGGTAACCATAAGCAGA 57.366 40.909 0.00 0.00 31.53 4.26
2508 3090 7.833285 ACAAAAGTTGGGTATTAACATCAGT 57.167 32.000 0.00 0.00 34.12 3.41
2646 3228 8.980481 AACAAGAAGAGTAAAAAGAATCAGGA 57.020 30.769 0.00 0.00 0.00 3.86
2714 3296 4.216472 GCAGTAAAGAGAAACCCTTTCCTG 59.784 45.833 0.00 0.00 39.24 3.86
3099 3681 2.167693 ACCAAGTGTCAAAGACTGTCGA 59.832 45.455 1.52 0.00 33.15 4.20
3101 3683 5.560953 GCATAACCAAGTGTCAAAGACTGTC 60.561 44.000 0.00 0.00 33.15 3.51
3103 3685 4.516698 AGCATAACCAAGTGTCAAAGACTG 59.483 41.667 0.00 0.00 33.15 3.51
3128 3710 7.543359 TTCAGAAATGTTTCAAGGGATTGAT 57.457 32.000 8.09 0.00 39.61 2.57
3380 3962 1.207488 TAGCAACCACCTCCAGCCAT 61.207 55.000 0.00 0.00 0.00 4.40
3414 3996 1.893919 AAAGCAGGAGGAGAGACGGC 61.894 60.000 0.00 0.00 0.00 5.68
3453 4035 1.446272 GAGGAACCTTGGCGACTCG 60.446 63.158 0.00 0.00 0.00 4.18
3532 4114 4.779475 CGAAGGGAGTTGTGCACT 57.221 55.556 19.41 0.00 39.07 4.40
3564 4146 6.041423 TCATCTAGCTCAATGTTCTTGTCA 57.959 37.500 0.00 0.00 0.00 3.58
3613 4195 1.552337 AGCAGCTTTAGCAGTAGCAGA 59.448 47.619 4.33 0.00 45.49 4.26
3928 4510 6.595326 CACTGGAAAGTGATTAGCATACAGAA 59.405 38.462 0.00 0.00 42.02 3.02
3937 4519 6.741992 TTGTATGCACTGGAAAGTGATTAG 57.258 37.500 9.97 0.00 42.02 1.73
4103 4685 1.414919 TCTGTGCGGGAAAACACTAGT 59.585 47.619 0.00 0.00 37.68 2.57
4267 4849 8.378172 TCTACTGTTCAATTTTAACACCTGAG 57.622 34.615 0.04 0.00 33.45 3.35
4337 4919 1.153549 GATGCCTGTCGTCCTCACC 60.154 63.158 0.00 0.00 0.00 4.02
4346 4928 2.583593 GCGACTCCGATGCCTGTC 60.584 66.667 0.00 0.00 38.22 3.51
4442 5024 4.657952 TCGAAGAGGAGGATCGCA 57.342 55.556 0.00 0.00 36.56 5.10
4487 5069 3.323691 TCTCGAAAGGGAAGAACATGACA 59.676 43.478 0.00 0.00 37.93 3.58
4511 5093 1.799258 CGTTGAGCCTGCAGCCTTTT 61.799 55.000 8.66 0.00 45.47 2.27
4520 5102 1.734477 CTCGGTGTCGTTGAGCCTG 60.734 63.158 0.00 0.00 37.69 4.85
4698 5288 3.136123 CTGCCGCCAAGTGGATGG 61.136 66.667 0.18 3.09 43.70 3.51
4714 5304 2.361610 CAATCCCCTTGCACCGCT 60.362 61.111 0.00 0.00 0.00 5.52
4807 5401 5.048507 GGTGTATCTCCTTATTCCAACGAC 58.951 45.833 0.00 0.00 0.00 4.34
4823 5417 2.488153 GTTTCTGCCCAACTGGTGTATC 59.512 50.000 0.00 0.00 36.04 2.24
4827 5421 2.154462 CTAGTTTCTGCCCAACTGGTG 58.846 52.381 3.21 0.00 35.95 4.17
4828 5422 1.545651 GCTAGTTTCTGCCCAACTGGT 60.546 52.381 3.21 0.00 35.67 4.00
4876 5470 5.052693 TGATATGAATTTCCAGGTCCCAG 57.947 43.478 0.00 0.00 0.00 4.45
4877 5471 5.668135 ATGATATGAATTTCCAGGTCCCA 57.332 39.130 0.00 0.00 0.00 4.37
4885 5479 9.438291 CAGTTGTACGAAATGATATGAATTTCC 57.562 33.333 11.96 3.39 39.73 3.13
5103 5697 3.859961 GTCAATAGGACGACACATCAGTG 59.140 47.826 0.00 0.00 43.30 3.66
5104 5698 4.111375 GTCAATAGGACGACACATCAGT 57.889 45.455 0.00 0.00 36.65 3.41
5114 5708 9.017669 GTACATTAAGTAACTGTCAATAGGACG 57.982 37.037 0.00 0.00 41.08 4.79
5161 5755 3.043586 AGCGTCGATTGATTAGCGTAAG 58.956 45.455 0.00 0.00 43.44 2.34
5169 5763 1.394917 GACTTGCAGCGTCGATTGATT 59.605 47.619 0.00 0.00 0.00 2.57
5177 5771 0.512952 AACATTCGACTTGCAGCGTC 59.487 50.000 7.86 7.86 0.00 5.19
5188 5782 3.333029 TGCTGGATCTGAAACATTCGA 57.667 42.857 0.00 0.00 0.00 3.71
5189 5783 4.334759 AGAATGCTGGATCTGAAACATTCG 59.665 41.667 15.22 0.00 44.97 3.34
5202 5799 2.586245 CGCTGGGAGAATGCTGGA 59.414 61.111 0.00 0.00 0.00 3.86
5206 5803 1.719600 CTATAGCGCTGGGAGAATGC 58.280 55.000 22.90 0.00 0.00 3.56
5210 5807 4.599036 TGCTATAGCGCTGGGAGA 57.401 55.556 22.90 0.00 45.83 3.71
5218 5815 2.002586 ACTGTGCTTTGTGCTATAGCG 58.997 47.619 19.55 6.24 45.83 4.26
5222 5819 5.300969 CACAATACTGTGCTTTGTGCTAT 57.699 39.130 15.29 0.00 46.19 2.97
5247 5852 9.492973 CCTGTCATTTTTATTTCATTTCTTGGT 57.507 29.630 0.00 0.00 0.00 3.67
5249 5854 8.445493 GCCCTGTCATTTTTATTTCATTTCTTG 58.555 33.333 0.00 0.00 0.00 3.02
5252 5857 7.387397 TGTGCCCTGTCATTTTTATTTCATTTC 59.613 33.333 0.00 0.00 0.00 2.17
5257 5862 6.397272 TGATGTGCCCTGTCATTTTTATTTC 58.603 36.000 0.00 0.00 0.00 2.17
5258 5863 6.014327 ACTGATGTGCCCTGTCATTTTTATTT 60.014 34.615 0.00 0.00 0.00 1.40
5259 5864 5.481473 ACTGATGTGCCCTGTCATTTTTATT 59.519 36.000 0.00 0.00 0.00 1.40
5261 5866 4.218200 CACTGATGTGCCCTGTCATTTTTA 59.782 41.667 0.00 0.00 37.38 1.52
5284 5894 2.028748 AGCATCAGAAAATGTGTTGCCC 60.029 45.455 6.86 0.00 33.67 5.36
5289 5899 7.038659 GTCTAGTCTAGCATCAGAAAATGTGT 58.961 38.462 1.60 0.00 0.00 3.72
5304 5914 3.476552 CAGAGGCTGGAGTCTAGTCTAG 58.523 54.545 10.99 3.26 28.53 2.43
5305 5915 2.422235 GCAGAGGCTGGAGTCTAGTCTA 60.422 54.545 10.99 0.00 36.96 2.59
5306 5916 1.684869 GCAGAGGCTGGAGTCTAGTCT 60.685 57.143 10.81 10.81 36.96 3.24
5307 5917 0.744281 GCAGAGGCTGGAGTCTAGTC 59.256 60.000 0.00 0.00 36.96 2.59
5308 5918 0.686112 GGCAGAGGCTGGAGTCTAGT 60.686 60.000 5.32 0.00 40.87 2.57
5340 5953 4.096382 GCAGAGCTATCATCCTACTCTAGC 59.904 50.000 0.00 0.00 35.99 3.42
5352 5968 0.688749 TCCTGCAGGCAGAGCTATCA 60.689 55.000 28.91 3.28 46.30 2.15
5409 6025 2.470781 CGATCGCTTCAACGTCAAACTC 60.471 50.000 0.26 0.00 0.00 3.01
5425 6041 3.081133 CACCACGGAAAGCGATCG 58.919 61.111 11.69 11.69 0.00 3.69
5467 6083 3.253838 TCCAGTTTCCACCCGGGG 61.254 66.667 27.92 12.73 37.22 5.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.