Multiple sequence alignment - TraesCS2A01G428200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G428200 chr2A 100.000 3803 0 0 1 3803 680547128 680550930 0.000000e+00 7023.0
1 TraesCS2A01G428200 chr2D 92.525 2087 95 19 880 2959 538597386 538599418 0.000000e+00 2933.0
2 TraesCS2A01G428200 chr2D 96.429 504 16 1 2956 3457 16055062 16055565 0.000000e+00 830.0
3 TraesCS2A01G428200 chr2D 90.794 315 27 1 3491 3803 538599427 538599741 1.630000e-113 420.0
4 TraesCS2A01G428200 chr2D 90.064 312 24 6 1 306 538596639 538596949 7.650000e-107 398.0
5 TraesCS2A01G428200 chr2D 84.615 208 16 11 552 744 538597132 538597338 3.880000e-45 193.0
6 TraesCS2A01G428200 chr2D 95.455 88 4 0 783 870 648165919 648166006 1.420000e-29 141.0
7 TraesCS2A01G428200 chr2B 93.628 1946 78 19 870 2804 641193262 641195172 0.000000e+00 2865.0
8 TraesCS2A01G428200 chr2B 96.477 511 14 3 2950 3457 485904406 485904915 0.000000e+00 841.0
9 TraesCS2A01G428200 chr2B 88.742 151 10 7 2793 2936 641195306 641195456 1.090000e-40 178.0
10 TraesCS2A01G428200 chr2B 92.632 95 6 1 781 875 479585320 479585227 6.630000e-28 135.0
11 TraesCS2A01G428200 chr2B 82.432 148 9 7 614 744 641193068 641193215 3.100000e-21 113.0
12 TraesCS2A01G428200 chr4B 97.446 509 10 2 2949 3454 670396367 670396875 0.000000e+00 865.0
13 TraesCS2A01G428200 chr4B 86.441 59 7 1 3547 3604 4899483 4899425 3.170000e-06 63.9
14 TraesCS2A01G428200 chr3B 97.222 504 12 1 2956 3457 670069389 670069892 0.000000e+00 852.0
15 TraesCS2A01G428200 chr3B 96.640 506 15 1 2954 3457 284640011 284639506 0.000000e+00 839.0
16 TraesCS2A01G428200 chr3B 95.358 517 20 3 2945 3457 691707262 691706746 0.000000e+00 819.0
17 TraesCS2A01G428200 chr3B 93.478 92 6 0 783 874 8881513 8881422 1.840000e-28 137.0
18 TraesCS2A01G428200 chr5A 83.607 915 137 12 1018 1921 429998156 429997244 0.000000e+00 846.0
19 TraesCS2A01G428200 chr5A 82.523 967 152 11 996 1947 419830895 419829931 0.000000e+00 833.0
20 TraesCS2A01G428200 chr5A 93.750 96 3 3 782 875 656668346 656668252 1.420000e-29 141.0
21 TraesCS2A01G428200 chr1B 96.825 504 14 1 2956 3457 55543576 55543073 0.000000e+00 841.0
22 TraesCS2A01G428200 chr5D 96.819 503 14 1 2957 3457 47518523 47519025 0.000000e+00 839.0
23 TraesCS2A01G428200 chr5D 96.819 503 14 1 2957 3457 88169264 88169766 0.000000e+00 839.0
24 TraesCS2A01G428200 chr5D 83.461 913 140 8 1019 1921 326384550 326383639 0.000000e+00 839.0
25 TraesCS2A01G428200 chr5D 82.315 933 154 7 995 1917 326402830 326403761 0.000000e+00 798.0
26 TraesCS2A01G428200 chr5B 82.663 969 147 18 996 1947 375224968 375224004 0.000000e+00 839.0
27 TraesCS2A01G428200 chr5B 82.748 939 146 13 995 1921 378903370 378904304 0.000000e+00 822.0
28 TraesCS2A01G428200 chr5B 82.166 942 150 16 995 1921 378853288 378852350 0.000000e+00 793.0
29 TraesCS2A01G428200 chr3D 93.750 96 6 0 781 876 400749697 400749602 1.100000e-30 145.0
30 TraesCS2A01G428200 chr4A 91.919 99 8 0 777 875 112585134 112585036 5.120000e-29 139.0
31 TraesCS2A01G428200 chr1D 92.632 95 7 0 781 875 19257148 19257242 1.840000e-28 137.0
32 TraesCS2A01G428200 chr1A 93.548 93 5 1 783 875 577481119 577481210 1.840000e-28 137.0
33 TraesCS2A01G428200 chr6D 92.473 93 7 0 777 869 417354696 417354788 2.380000e-27 134.0
34 TraesCS2A01G428200 chr4D 87.671 73 9 0 3532 3604 3698407 3698479 6.770000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G428200 chr2A 680547128 680550930 3802 False 7023 7023 100.000000 1 3803 1 chr2A.!!$F1 3802
1 TraesCS2A01G428200 chr2D 538596639 538599741 3102 False 986 2933 89.499500 1 3803 4 chr2D.!!$F3 3802
2 TraesCS2A01G428200 chr2D 16055062 16055565 503 False 830 830 96.429000 2956 3457 1 chr2D.!!$F1 501
3 TraesCS2A01G428200 chr2B 641193068 641195456 2388 False 1052 2865 88.267333 614 2936 3 chr2B.!!$F2 2322
4 TraesCS2A01G428200 chr2B 485904406 485904915 509 False 841 841 96.477000 2950 3457 1 chr2B.!!$F1 507
5 TraesCS2A01G428200 chr4B 670396367 670396875 508 False 865 865 97.446000 2949 3454 1 chr4B.!!$F1 505
6 TraesCS2A01G428200 chr3B 670069389 670069892 503 False 852 852 97.222000 2956 3457 1 chr3B.!!$F1 501
7 TraesCS2A01G428200 chr3B 284639506 284640011 505 True 839 839 96.640000 2954 3457 1 chr3B.!!$R2 503
8 TraesCS2A01G428200 chr3B 691706746 691707262 516 True 819 819 95.358000 2945 3457 1 chr3B.!!$R3 512
9 TraesCS2A01G428200 chr5A 429997244 429998156 912 True 846 846 83.607000 1018 1921 1 chr5A.!!$R2 903
10 TraesCS2A01G428200 chr5A 419829931 419830895 964 True 833 833 82.523000 996 1947 1 chr5A.!!$R1 951
11 TraesCS2A01G428200 chr1B 55543073 55543576 503 True 841 841 96.825000 2956 3457 1 chr1B.!!$R1 501
12 TraesCS2A01G428200 chr5D 47518523 47519025 502 False 839 839 96.819000 2957 3457 1 chr5D.!!$F1 500
13 TraesCS2A01G428200 chr5D 88169264 88169766 502 False 839 839 96.819000 2957 3457 1 chr5D.!!$F2 500
14 TraesCS2A01G428200 chr5D 326383639 326384550 911 True 839 839 83.461000 1019 1921 1 chr5D.!!$R1 902
15 TraesCS2A01G428200 chr5D 326402830 326403761 931 False 798 798 82.315000 995 1917 1 chr5D.!!$F3 922
16 TraesCS2A01G428200 chr5B 375224004 375224968 964 True 839 839 82.663000 996 1947 1 chr5B.!!$R1 951
17 TraesCS2A01G428200 chr5B 378903370 378904304 934 False 822 822 82.748000 995 1921 1 chr5B.!!$F1 926
18 TraesCS2A01G428200 chr5B 378852350 378853288 938 True 793 793 82.166000 995 1921 1 chr5B.!!$R2 926

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
98 105 0.034186 CCTATGGTTTGGCTCTGGCA 60.034 55.0 0.0 0.0 40.87 4.92 F
506 526 0.107456 CCTTCATCACCCATCCCTCG 59.893 60.0 0.0 0.0 0.00 4.63 F
1233 1301 0.108019 GGTCCTTCCCTGTCGTTGTT 59.892 55.0 0.0 0.0 0.00 2.83 F
1926 2006 0.526211 TCATTCAGGTCAGTCCGTCG 59.474 55.0 0.0 0.0 41.99 5.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1224 1292 1.300620 CGAGGAGCCAACAACGACA 60.301 57.895 0.00 0.00 0.00 4.35 R
2321 2415 1.149401 GCCTCCACATAGGGAAGGC 59.851 63.158 1.96 1.96 41.06 4.35 R
2541 2635 0.994247 AGTCATGCCCCTTGATGTCA 59.006 50.000 0.00 0.00 0.00 3.58 R
3466 3716 0.385751 GACGGAGATCGATGGAAGCA 59.614 55.000 0.54 0.00 42.43 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 2.594592 GTATGGATGGCGGGGTGC 60.595 66.667 0.00 0.00 45.38 5.01
25 26 2.382770 TATGGATGGCGGGGTGCTT 61.383 57.895 0.00 0.00 45.43 3.91
33 34 3.222855 CGGGGTGCTTGTTGGCAA 61.223 61.111 0.00 0.00 44.18 4.52
98 105 0.034186 CCTATGGTTTGGCTCTGGCA 60.034 55.000 0.00 0.00 40.87 4.92
178 185 1.221414 GCCATGAATACGGCTGAGAC 58.779 55.000 0.00 0.00 45.29 3.36
188 195 1.546476 ACGGCTGAGACGAAGAGAAAT 59.454 47.619 17.64 0.00 35.20 2.17
201 208 5.587844 ACGAAGAGAAATGGATTTGAGGATG 59.412 40.000 0.00 0.00 0.00 3.51
205 212 8.605325 AAGAGAAATGGATTTGAGGATGATTT 57.395 30.769 0.00 0.00 0.00 2.17
206 213 8.008513 AGAGAAATGGATTTGAGGATGATTTG 57.991 34.615 0.00 0.00 0.00 2.32
235 242 5.815233 TTTGCTCCAATTTATTTGACCCA 57.185 34.783 0.00 0.00 37.53 4.51
264 271 7.156000 GGGTAAGCTATGAGAGGATAACTTTC 58.844 42.308 0.00 0.00 0.00 2.62
268 275 7.385894 AGCTATGAGAGGATAACTTTCCAAT 57.614 36.000 0.00 0.00 38.32 3.16
305 312 8.855804 TTATAGATTTGGGAGAAGGACTAGTT 57.144 34.615 0.00 0.00 0.00 2.24
306 313 5.685520 AGATTTGGGAGAAGGACTAGTTC 57.314 43.478 0.00 0.00 0.00 3.01
307 314 5.346270 AGATTTGGGAGAAGGACTAGTTCT 58.654 41.667 0.00 0.00 36.95 3.01
308 315 5.423931 AGATTTGGGAGAAGGACTAGTTCTC 59.576 44.000 3.51 9.22 46.30 2.87
316 323 7.589958 GAGAAGGACTAGTTCTCATATTGGA 57.410 40.000 15.29 0.00 46.29 3.53
317 324 7.354751 AGAAGGACTAGTTCTCATATTGGAC 57.645 40.000 3.51 0.00 27.32 4.02
318 325 6.325286 AGAAGGACTAGTTCTCATATTGGACC 59.675 42.308 3.51 0.00 27.32 4.46
319 326 5.782925 AGGACTAGTTCTCATATTGGACCT 58.217 41.667 0.00 0.00 0.00 3.85
320 327 5.600484 AGGACTAGTTCTCATATTGGACCTG 59.400 44.000 0.00 0.00 0.00 4.00
321 328 5.221541 GGACTAGTTCTCATATTGGACCTGG 60.222 48.000 0.00 0.00 0.00 4.45
322 329 5.529289 ACTAGTTCTCATATTGGACCTGGA 58.471 41.667 0.00 0.00 0.00 3.86
323 330 5.600484 ACTAGTTCTCATATTGGACCTGGAG 59.400 44.000 0.00 0.00 0.00 3.86
324 331 4.624913 AGTTCTCATATTGGACCTGGAGA 58.375 43.478 0.00 0.00 0.00 3.71
325 332 5.222870 AGTTCTCATATTGGACCTGGAGAT 58.777 41.667 0.00 0.00 32.08 2.75
326 333 5.071519 AGTTCTCATATTGGACCTGGAGATG 59.928 44.000 0.00 0.00 32.08 2.90
327 334 3.326006 TCTCATATTGGACCTGGAGATGC 59.674 47.826 0.00 0.00 0.00 3.91
328 335 3.321039 TCATATTGGACCTGGAGATGCT 58.679 45.455 0.00 0.00 0.00 3.79
329 336 3.718434 TCATATTGGACCTGGAGATGCTT 59.282 43.478 0.00 0.00 0.00 3.91
330 337 4.166725 TCATATTGGACCTGGAGATGCTTT 59.833 41.667 0.00 0.00 0.00 3.51
331 338 2.496899 TTGGACCTGGAGATGCTTTC 57.503 50.000 0.00 0.00 0.00 2.62
332 339 1.661463 TGGACCTGGAGATGCTTTCT 58.339 50.000 0.00 0.00 37.41 2.52
333 340 1.988107 TGGACCTGGAGATGCTTTCTT 59.012 47.619 0.00 0.00 33.74 2.52
334 341 2.290514 TGGACCTGGAGATGCTTTCTTG 60.291 50.000 0.00 0.00 33.74 3.02
335 342 2.290577 GGACCTGGAGATGCTTTCTTGT 60.291 50.000 0.00 0.00 33.74 3.16
336 343 3.416156 GACCTGGAGATGCTTTCTTGTT 58.584 45.455 0.00 0.00 33.74 2.83
337 344 3.152341 ACCTGGAGATGCTTTCTTGTTG 58.848 45.455 0.00 0.00 33.74 3.33
338 345 2.490903 CCTGGAGATGCTTTCTTGTTGG 59.509 50.000 0.00 0.00 33.74 3.77
339 346 3.152341 CTGGAGATGCTTTCTTGTTGGT 58.848 45.455 0.00 0.00 33.74 3.67
340 347 3.565307 TGGAGATGCTTTCTTGTTGGTT 58.435 40.909 0.00 0.00 33.74 3.67
341 348 4.724399 TGGAGATGCTTTCTTGTTGGTTA 58.276 39.130 0.00 0.00 33.74 2.85
342 349 4.761739 TGGAGATGCTTTCTTGTTGGTTAG 59.238 41.667 0.00 0.00 33.74 2.34
347 354 2.288213 GCTTTCTTGTTGGTTAGTGGGC 60.288 50.000 0.00 0.00 0.00 5.36
350 357 4.440826 TTCTTGTTGGTTAGTGGGCTAA 57.559 40.909 0.00 0.00 35.04 3.09
383 393 0.948678 TTTTTGCGGGACTCCTTTCG 59.051 50.000 0.00 0.00 0.00 3.46
388 398 0.108329 GCGGGACTCCTTTCGATCAA 60.108 55.000 0.00 0.00 0.00 2.57
394 404 4.884164 GGGACTCCTTTCGATCAATTCATT 59.116 41.667 0.00 0.00 0.00 2.57
404 414 9.595357 CTTTCGATCAATTCATTATCTGTCATG 57.405 33.333 0.00 0.00 0.00 3.07
411 421 9.317936 TCAATTCATTATCTGTCATGAGTACAC 57.682 33.333 0.00 0.00 31.04 2.90
415 425 5.500645 TTATCTGTCATGAGTACACGGAG 57.499 43.478 0.00 0.00 0.00 4.63
419 429 0.530744 TCATGAGTACACGGAGCACC 59.469 55.000 0.00 0.00 0.00 5.01
421 431 1.134699 CATGAGTACACGGAGCACCAT 60.135 52.381 0.00 0.00 35.59 3.55
423 433 2.172679 TGAGTACACGGAGCACCATAA 58.827 47.619 0.00 0.00 35.59 1.90
428 438 5.736813 AGTACACGGAGCACCATAAATAAA 58.263 37.500 0.00 0.00 35.59 1.40
463 481 3.818961 TCACCTAACGACGACTACAAG 57.181 47.619 0.00 0.00 0.00 3.16
466 484 2.095364 ACCTAACGACGACTACAAGCAG 60.095 50.000 0.00 0.00 0.00 4.24
471 491 0.798771 GACGACTACAAGCAGAGCGG 60.799 60.000 0.00 0.00 0.00 5.52
479 499 2.276116 AAGCAGAGCGGTCCGAAGA 61.276 57.895 17.49 0.00 0.00 2.87
499 519 1.314534 CGCATTGCCTTCATCACCCA 61.315 55.000 2.41 0.00 0.00 4.51
505 525 0.179006 GCCTTCATCACCCATCCCTC 60.179 60.000 0.00 0.00 0.00 4.30
506 526 0.107456 CCTTCATCACCCATCCCTCG 59.893 60.000 0.00 0.00 0.00 4.63
508 528 0.830648 TTCATCACCCATCCCTCGTC 59.169 55.000 0.00 0.00 0.00 4.20
509 529 1.068083 CATCACCCATCCCTCGTCG 59.932 63.158 0.00 0.00 0.00 5.12
510 530 1.076265 ATCACCCATCCCTCGTCGA 60.076 57.895 0.00 0.00 0.00 4.20
511 531 0.686441 ATCACCCATCCCTCGTCGAA 60.686 55.000 0.00 0.00 0.00 3.71
513 533 1.305046 ACCCATCCCTCGTCGAAGT 60.305 57.895 0.00 0.00 0.00 3.01
514 534 0.903454 ACCCATCCCTCGTCGAAGTT 60.903 55.000 0.00 0.00 0.00 2.66
515 535 0.460284 CCCATCCCTCGTCGAAGTTG 60.460 60.000 0.00 0.00 0.00 3.16
516 536 0.530744 CCATCCCTCGTCGAAGTTGA 59.469 55.000 0.00 0.00 0.00 3.18
517 537 1.469940 CCATCCCTCGTCGAAGTTGAG 60.470 57.143 0.00 0.00 0.00 3.02
518 538 1.472878 CATCCCTCGTCGAAGTTGAGA 59.527 52.381 0.00 0.00 33.18 3.27
519 539 1.612676 TCCCTCGTCGAAGTTGAGAA 58.387 50.000 0.00 0.00 33.18 2.87
520 540 1.958579 TCCCTCGTCGAAGTTGAGAAA 59.041 47.619 0.00 0.00 33.18 2.52
521 541 2.363038 TCCCTCGTCGAAGTTGAGAAAA 59.637 45.455 0.00 0.00 33.18 2.29
522 542 3.128349 CCCTCGTCGAAGTTGAGAAAAA 58.872 45.455 0.00 0.00 33.18 1.94
523 543 3.059800 CCCTCGTCGAAGTTGAGAAAAAC 60.060 47.826 0.00 0.00 33.18 2.43
524 544 3.802685 CCTCGTCGAAGTTGAGAAAAACT 59.197 43.478 0.00 0.00 42.21 2.66
536 556 8.882415 AGTTGAGAAAAACTTGTCGTAATAGA 57.118 30.769 0.00 0.00 37.05 1.98
537 557 8.762426 AGTTGAGAAAAACTTGTCGTAATAGAC 58.238 33.333 0.00 0.00 37.05 2.59
547 567 5.068234 TGTCGTAATAGACAGTTGGAAGG 57.932 43.478 0.00 0.00 45.18 3.46
548 568 4.525487 TGTCGTAATAGACAGTTGGAAGGT 59.475 41.667 0.00 0.00 45.18 3.50
549 569 5.100943 GTCGTAATAGACAGTTGGAAGGTC 58.899 45.833 0.00 0.00 40.65 3.85
550 570 4.768448 TCGTAATAGACAGTTGGAAGGTCA 59.232 41.667 0.00 0.00 34.04 4.02
556 576 3.331889 AGACAGTTGGAAGGTCATGGAAT 59.668 43.478 0.00 0.00 34.04 3.01
562 582 7.093771 ACAGTTGGAAGGTCATGGAATAAATTC 60.094 37.037 0.00 0.00 36.08 2.17
563 583 7.123247 CAGTTGGAAGGTCATGGAATAAATTCT 59.877 37.037 2.91 0.00 37.00 2.40
565 585 8.314021 GTTGGAAGGTCATGGAATAAATTCTTT 58.686 33.333 2.91 0.00 37.00 2.52
567 587 8.531146 TGGAAGGTCATGGAATAAATTCTTTTC 58.469 33.333 2.91 0.00 37.00 2.29
568 588 7.702348 GGAAGGTCATGGAATAAATTCTTTTCG 59.298 37.037 2.91 0.00 37.00 3.46
575 595 6.242396 TGGAATAAATTCTTTTCGGACCTCA 58.758 36.000 2.91 0.00 37.00 3.86
586 606 6.366877 TCTTTTCGGACCTCATTAACGTTAAG 59.633 38.462 23.78 16.05 0.00 1.85
631 651 3.114616 CAGAACCTGCAGCGGACG 61.115 66.667 8.66 0.00 0.00 4.79
669 691 1.337817 CGCGCATAGGCAGACGTATC 61.338 60.000 8.75 0.00 41.24 2.24
674 696 2.743938 CATAGGCAGACGTATCACACC 58.256 52.381 0.00 0.00 0.00 4.16
744 781 3.744660 AGGAAACTGGCACAAGACTAAG 58.255 45.455 0.00 0.00 41.13 2.18
749 808 2.564947 ACTGGCACAAGACTAAGAGAGG 59.435 50.000 0.00 0.00 38.70 3.69
759 818 4.853007 AGACTAAGAGAGGGCGTAGTTAA 58.147 43.478 0.00 0.00 34.08 2.01
761 820 5.892686 AGACTAAGAGAGGGCGTAGTTAATT 59.107 40.000 0.00 0.00 34.08 1.40
762 821 7.059156 AGACTAAGAGAGGGCGTAGTTAATTA 58.941 38.462 0.00 0.00 34.08 1.40
764 823 7.884257 ACTAAGAGAGGGCGTAGTTAATTATC 58.116 38.462 0.00 0.00 30.58 1.75
765 824 6.726490 AAGAGAGGGCGTAGTTAATTATCA 57.274 37.500 0.00 0.00 0.00 2.15
768 827 5.608449 AGAGGGCGTAGTTAATTATCAACC 58.392 41.667 0.00 0.00 0.00 3.77
769 828 4.374399 AGGGCGTAGTTAATTATCAACCG 58.626 43.478 0.00 0.00 0.00 4.44
770 829 3.059393 GGGCGTAGTTAATTATCAACCGC 60.059 47.826 12.32 12.32 36.48 5.68
771 830 3.805971 GGCGTAGTTAATTATCAACCGCT 59.194 43.478 16.73 0.00 37.02 5.52
772 831 4.318546 GGCGTAGTTAATTATCAACCGCTG 60.319 45.833 16.73 0.00 37.02 5.18
773 832 4.505191 GCGTAGTTAATTATCAACCGCTGA 59.495 41.667 12.98 0.00 35.25 4.26
774 833 5.555818 GCGTAGTTAATTATCAACCGCTGAC 60.556 44.000 12.98 0.00 36.69 3.51
775 834 5.747197 CGTAGTTAATTATCAACCGCTGACT 59.253 40.000 0.00 0.00 36.69 3.41
776 835 6.914215 CGTAGTTAATTATCAACCGCTGACTA 59.086 38.462 0.00 0.00 36.69 2.59
777 836 7.433131 CGTAGTTAATTATCAACCGCTGACTAA 59.567 37.037 0.00 0.00 36.69 2.24
778 837 7.772332 AGTTAATTATCAACCGCTGACTAAG 57.228 36.000 0.00 0.00 36.69 2.18
779 838 6.761714 AGTTAATTATCAACCGCTGACTAAGG 59.238 38.462 0.00 0.00 36.69 2.69
780 839 5.353394 AATTATCAACCGCTGACTAAGGA 57.647 39.130 0.00 0.00 36.69 3.36
781 840 2.969628 ATCAACCGCTGACTAAGGAG 57.030 50.000 0.00 0.00 36.69 3.69
782 841 1.629043 TCAACCGCTGACTAAGGAGT 58.371 50.000 0.00 0.00 39.20 3.85
783 842 2.799017 TCAACCGCTGACTAAGGAGTA 58.201 47.619 0.00 0.00 35.45 2.59
784 843 2.490903 TCAACCGCTGACTAAGGAGTAC 59.509 50.000 0.00 0.00 35.45 2.73
785 844 2.492484 CAACCGCTGACTAAGGAGTACT 59.508 50.000 0.00 0.00 35.45 2.73
786 845 2.367486 ACCGCTGACTAAGGAGTACTC 58.633 52.381 14.87 14.87 35.45 2.59
862 921 9.774413 AACATTCTTATATTAGTTTACGGAGGG 57.226 33.333 0.00 0.00 0.00 4.30
863 922 9.151177 ACATTCTTATATTAGTTTACGGAGGGA 57.849 33.333 0.00 0.00 0.00 4.20
864 923 9.640963 CATTCTTATATTAGTTTACGGAGGGAG 57.359 37.037 0.00 0.00 0.00 4.30
865 924 8.773033 TTCTTATATTAGTTTACGGAGGGAGT 57.227 34.615 0.00 0.00 0.00 3.85
866 925 9.866655 TTCTTATATTAGTTTACGGAGGGAGTA 57.133 33.333 0.00 0.00 0.00 2.59
867 926 9.289782 TCTTATATTAGTTTACGGAGGGAGTAC 57.710 37.037 0.00 0.00 0.00 2.73
868 927 8.995027 TTATATTAGTTTACGGAGGGAGTACA 57.005 34.615 0.00 0.00 0.00 2.90
877 936 9.852091 GTTTACGGAGGGAGTACATTATTATAG 57.148 37.037 0.00 0.00 0.00 1.31
901 960 0.823356 AACACCTGCAATGGCTCGTT 60.823 50.000 0.00 0.00 41.91 3.85
922 981 1.274167 AGCGGTTGATCGGTCACTTAA 59.726 47.619 0.00 0.00 35.95 1.85
923 982 2.093658 AGCGGTTGATCGGTCACTTAAT 60.094 45.455 0.00 0.00 35.95 1.40
924 983 2.676342 GCGGTTGATCGGTCACTTAATT 59.324 45.455 0.00 0.00 33.11 1.40
927 986 4.025979 CGGTTGATCGGTCACTTAATTAGC 60.026 45.833 0.00 0.00 33.11 3.09
928 987 4.272748 GGTTGATCGGTCACTTAATTAGCC 59.727 45.833 0.00 0.00 33.11 3.93
929 988 3.713288 TGATCGGTCACTTAATTAGCCG 58.287 45.455 0.00 0.00 40.43 5.52
930 989 1.930567 TCGGTCACTTAATTAGCCGC 58.069 50.000 0.00 0.00 39.11 6.53
942 1001 6.261603 ACTTAATTAGCCGCCCACTTAATAAC 59.738 38.462 0.00 0.00 0.00 1.89
947 1006 2.561569 CCGCCCACTTAATAACAGGAG 58.438 52.381 0.00 0.00 0.00 3.69
977 1036 1.522668 CAAGAATTGCTCGGACACCA 58.477 50.000 0.00 0.00 40.39 4.17
978 1037 1.197721 CAAGAATTGCTCGGACACCAC 59.802 52.381 0.00 0.00 40.39 4.16
979 1038 0.396435 AGAATTGCTCGGACACCACA 59.604 50.000 0.00 0.00 0.00 4.17
1233 1301 0.108019 GGTCCTTCCCTGTCGTTGTT 59.892 55.000 0.00 0.00 0.00 2.83
1454 1522 4.933064 CATCCGGCGCGAGGAGAC 62.933 72.222 24.05 0.39 41.66 3.36
1539 1616 1.374758 CACCCTGAGCCTGAACGTC 60.375 63.158 0.00 0.00 0.00 4.34
1647 1727 2.791383 AGTGCATGATAGACGAGCTC 57.209 50.000 2.73 2.73 0.00 4.09
1926 2006 0.526211 TCATTCAGGTCAGTCCGTCG 59.474 55.000 0.00 0.00 41.99 5.12
1947 2028 6.417044 CGTCGATCTTTCCGTTATTCAGTAAT 59.583 38.462 0.00 0.00 0.00 1.89
1948 2029 7.357368 CGTCGATCTTTCCGTTATTCAGTAATC 60.357 40.741 0.00 0.00 0.00 1.75
1949 2030 7.434307 GTCGATCTTTCCGTTATTCAGTAATCA 59.566 37.037 0.00 0.00 0.00 2.57
1950 2031 7.648112 TCGATCTTTCCGTTATTCAGTAATCAG 59.352 37.037 0.00 0.00 0.00 2.90
1951 2032 7.435488 CGATCTTTCCGTTATTCAGTAATCAGT 59.565 37.037 0.00 0.00 0.00 3.41
1952 2033 9.745880 GATCTTTCCGTTATTCAGTAATCAGTA 57.254 33.333 0.00 0.00 0.00 2.74
1986 2071 1.678635 CAGATTGGCGGCCAGGAAA 60.679 57.895 22.59 7.80 33.81 3.13
1987 2072 1.379044 AGATTGGCGGCCAGGAAAG 60.379 57.895 22.59 0.00 33.81 2.62
1988 2073 2.362889 ATTGGCGGCCAGGAAAGG 60.363 61.111 22.59 0.00 33.81 3.11
1997 2082 1.531365 CCAGGAAAGGCCAGTTGCA 60.531 57.895 5.01 0.00 43.89 4.08
2042 2130 3.623703 ACCCGTTGACCTTTTACAGTTT 58.376 40.909 0.00 0.00 0.00 2.66
2075 2169 5.859495 ACTTTTCTGTTAGAGAGGTTCCAG 58.141 41.667 0.00 0.00 30.18 3.86
2087 2181 6.430007 AGAGAGGTTCCAGAAAAATGCATAT 58.570 36.000 0.00 0.00 0.00 1.78
2088 2182 6.894103 AGAGAGGTTCCAGAAAAATGCATATT 59.106 34.615 0.00 0.00 0.00 1.28
2089 2183 8.055181 AGAGAGGTTCCAGAAAAATGCATATTA 58.945 33.333 0.00 0.00 0.00 0.98
2090 2184 8.593945 AGAGGTTCCAGAAAAATGCATATTAA 57.406 30.769 0.00 0.00 0.00 1.40
2119 2213 7.618019 AGGAACTTATCAGGTTATGCTGATA 57.382 36.000 0.00 0.00 40.38 2.15
2131 2225 9.499479 CAGGTTATGCTGATACTAATTCTGAAT 57.501 33.333 0.00 0.00 0.00 2.57
2181 2275 3.461773 CAGGACCTCATCGCCGGT 61.462 66.667 1.90 0.00 35.90 5.28
2205 2299 1.669760 GGAAACCACGGCGATCACA 60.670 57.895 16.62 0.00 0.00 3.58
2478 2572 4.388499 GTGTGGTCCATCGGCCGT 62.388 66.667 27.15 10.00 0.00 5.68
2541 2635 1.298859 GGTTCGTCGGCAGCAAGATT 61.299 55.000 0.00 0.00 0.00 2.40
2586 2680 2.755469 CTGCCATTTGGGTCCGGG 60.755 66.667 0.00 0.00 39.65 5.73
2607 2701 2.030562 CGGATGTGCCCCGGATAC 59.969 66.667 0.73 0.00 43.05 2.24
2816 3059 3.875134 GGTCATTAGGGTATTGTTGTCCG 59.125 47.826 0.00 0.00 0.00 4.79
2820 3063 2.109425 AGGGTATTGTTGTCCGCTTC 57.891 50.000 0.00 0.00 0.00 3.86
2839 3082 1.151668 CTTGTGCTTCCCAAGTCTCG 58.848 55.000 0.00 0.00 35.63 4.04
2845 3088 1.666189 GCTTCCCAAGTCTCGTATTGC 59.334 52.381 0.00 0.00 0.00 3.56
2873 3116 1.616374 TGTTGCGTAGAGTCATGTGGA 59.384 47.619 0.00 0.00 0.00 4.02
2923 3169 5.731686 GCTTGTCCATAAGATGCTTGCTAAC 60.732 44.000 0.00 0.00 0.00 2.34
2938 3184 1.940613 GCTAACTAGGGGCATTTGACG 59.059 52.381 0.00 0.00 0.00 4.35
2940 3186 2.109425 AACTAGGGGCATTTGACGTC 57.891 50.000 9.11 9.11 0.00 4.34
2950 3196 6.213600 AGGGGCATTTGACGTCTATATAATCT 59.786 38.462 17.92 3.86 0.00 2.40
3156 3404 0.898326 CCCAAACCACACCTAAGCCC 60.898 60.000 0.00 0.00 0.00 5.19
3171 3419 0.539438 AGCCCAACATCAAAAGCCGA 60.539 50.000 0.00 0.00 0.00 5.54
3343 3592 0.602638 GTCACCATGACGCCAGACAA 60.603 55.000 0.00 0.00 37.67 3.18
3425 3674 2.872388 ATCGATCTCCGCCGCCATT 61.872 57.895 0.00 0.00 38.37 3.16
3457 3707 0.321653 GAAACACCGCTCCACCATCT 60.322 55.000 0.00 0.00 0.00 2.90
3458 3708 0.981183 AAACACCGCTCCACCATCTA 59.019 50.000 0.00 0.00 0.00 1.98
3459 3709 0.537188 AACACCGCTCCACCATCTAG 59.463 55.000 0.00 0.00 0.00 2.43
3460 3710 0.614979 ACACCGCTCCACCATCTAGT 60.615 55.000 0.00 0.00 0.00 2.57
3461 3711 0.537188 CACCGCTCCACCATCTAGTT 59.463 55.000 0.00 0.00 0.00 2.24
3462 3712 0.824759 ACCGCTCCACCATCTAGTTC 59.175 55.000 0.00 0.00 0.00 3.01
3463 3713 1.115467 CCGCTCCACCATCTAGTTCT 58.885 55.000 0.00 0.00 0.00 3.01
3464 3714 1.202463 CCGCTCCACCATCTAGTTCTG 60.202 57.143 0.00 0.00 0.00 3.02
3465 3715 1.751351 CGCTCCACCATCTAGTTCTGA 59.249 52.381 0.00 0.00 0.00 3.27
3466 3716 2.363680 CGCTCCACCATCTAGTTCTGAT 59.636 50.000 0.00 0.00 0.00 2.90
3467 3717 3.726607 GCTCCACCATCTAGTTCTGATG 58.273 50.000 0.00 0.00 40.51 3.07
3468 3718 3.726607 CTCCACCATCTAGTTCTGATGC 58.273 50.000 0.00 0.00 39.76 3.91
3469 3719 3.378512 TCCACCATCTAGTTCTGATGCT 58.621 45.455 0.00 0.00 39.76 3.79
3470 3720 3.776969 TCCACCATCTAGTTCTGATGCTT 59.223 43.478 0.00 0.00 39.76 3.91
3471 3721 4.125703 CCACCATCTAGTTCTGATGCTTC 58.874 47.826 0.00 0.00 39.76 3.86
3472 3722 4.125703 CACCATCTAGTTCTGATGCTTCC 58.874 47.826 0.00 0.00 39.76 3.46
3473 3723 3.776969 ACCATCTAGTTCTGATGCTTCCA 59.223 43.478 0.00 0.00 39.76 3.53
3474 3724 4.411540 ACCATCTAGTTCTGATGCTTCCAT 59.588 41.667 0.00 0.00 39.76 3.41
3475 3725 4.996122 CCATCTAGTTCTGATGCTTCCATC 59.004 45.833 0.00 0.00 46.46 3.51
3483 3733 1.707632 GATGCTTCCATCGATCTCCG 58.292 55.000 0.00 0.00 38.59 4.63
3484 3734 1.000283 GATGCTTCCATCGATCTCCGT 60.000 52.381 0.00 0.00 38.59 4.69
3485 3735 0.385751 TGCTTCCATCGATCTCCGTC 59.614 55.000 0.00 0.00 39.75 4.79
3486 3736 0.385751 GCTTCCATCGATCTCCGTCA 59.614 55.000 0.00 0.00 39.75 4.35
3487 3737 1.866063 GCTTCCATCGATCTCCGTCAC 60.866 57.143 0.00 0.00 39.75 3.67
3488 3738 0.744874 TTCCATCGATCTCCGTCACC 59.255 55.000 0.00 0.00 39.75 4.02
3489 3739 0.395173 TCCATCGATCTCCGTCACCA 60.395 55.000 0.00 0.00 39.75 4.17
3501 3751 3.777478 TCCGTCACCATTTATCTCGTTC 58.223 45.455 0.00 0.00 0.00 3.95
3510 3760 5.525378 ACCATTTATCTCGTTCTGATGCTTC 59.475 40.000 0.00 0.00 0.00 3.86
3512 3762 4.736126 TTATCTCGTTCTGATGCTTCCA 57.264 40.909 0.00 0.00 0.00 3.53
3513 3763 3.834489 ATCTCGTTCTGATGCTTCCAT 57.166 42.857 0.00 0.00 0.00 3.41
3515 3765 4.736126 TCTCGTTCTGATGCTTCCATTA 57.264 40.909 0.00 0.00 0.00 1.90
3516 3766 5.084818 TCTCGTTCTGATGCTTCCATTAA 57.915 39.130 0.00 0.00 0.00 1.40
3528 3778 6.588719 TGCTTCCATTAAAGTGCTTAACAT 57.411 33.333 0.00 0.00 32.26 2.71
3529 3779 6.389091 TGCTTCCATTAAAGTGCTTAACATG 58.611 36.000 0.00 0.00 32.26 3.21
3530 3780 5.807011 GCTTCCATTAAAGTGCTTAACATGG 59.193 40.000 0.00 9.15 33.51 3.66
3536 3786 1.839424 AGTGCTTAACATGGAAGGGC 58.161 50.000 10.59 3.21 0.00 5.19
3537 3787 1.075374 AGTGCTTAACATGGAAGGGCA 59.925 47.619 10.59 5.45 0.00 5.36
3560 3810 6.350864 GCATGGCTAGCTCTAATCTAGATGAA 60.351 42.308 15.72 0.00 36.50 2.57
3564 3814 8.654997 TGGCTAGCTCTAATCTAGATGAAAATT 58.345 33.333 15.72 0.00 36.50 1.82
3597 3847 8.616076 GTCTCATCTAATTTCTACACCATTTGG 58.384 37.037 0.00 0.00 42.17 3.28
3625 3875 8.542497 TTACATAGAGACTTGTATGCGTTTTT 57.458 30.769 5.93 0.00 34.72 1.94
3720 3970 7.117236 GTCATGAACTCGTTTGGTTACATTCTA 59.883 37.037 0.00 0.00 0.00 2.10
3722 3972 5.407387 TGAACTCGTTTGGTTACATTCTAGC 59.593 40.000 0.00 0.00 0.00 3.42
3794 4046 7.329226 GCAAATGTACATAACAGAAAATGTGCT 59.671 33.333 9.21 0.00 43.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 1.145803 GATTATACCCCAACTCGCGC 58.854 55.000 0.00 0.00 0.00 6.86
38 39 1.792006 GGATTATACCCCAACTCGCG 58.208 55.000 0.00 0.00 0.00 5.87
40 41 3.554337 CCTTCGGATTATACCCCAACTCG 60.554 52.174 0.00 0.00 0.00 4.18
41 42 3.644738 TCCTTCGGATTATACCCCAACTC 59.355 47.826 0.00 0.00 0.00 3.01
42 43 3.660959 TCCTTCGGATTATACCCCAACT 58.339 45.455 0.00 0.00 0.00 3.16
50 57 5.484715 CGCCCTATTTTCCTTCGGATTATA 58.515 41.667 0.00 0.00 0.00 0.98
72 79 4.236416 CAAACCATAGGCGCGCCG 62.236 66.667 41.70 30.21 41.95 6.46
83 90 1.607178 CCATGCCAGAGCCAAACCA 60.607 57.895 0.00 0.00 38.69 3.67
164 171 2.355132 TCTCTTCGTCTCAGCCGTATTC 59.645 50.000 0.00 0.00 0.00 1.75
178 185 5.819379 TCATCCTCAAATCCATTTCTCTTCG 59.181 40.000 0.00 0.00 0.00 3.79
188 195 7.543359 AAGAAACAAATCATCCTCAAATCCA 57.457 32.000 0.00 0.00 0.00 3.41
205 212 9.388506 TCAAATAAATTGGAGCAAAAAGAAACA 57.611 25.926 0.00 0.00 39.62 2.83
206 213 9.650371 GTCAAATAAATTGGAGCAAAAAGAAAC 57.350 29.630 0.00 0.00 39.62 2.78
235 242 7.293535 AGTTATCCTCTCATAGCTTACCCATTT 59.706 37.037 0.00 0.00 0.00 2.32
253 260 8.343787 TCCCTCAAATAATTGGAAAGTTATCCT 58.656 33.333 0.00 0.00 40.35 3.24
286 293 5.094387 TGAGAACTAGTCCTTCTCCCAAAT 58.906 41.667 16.80 0.00 42.07 2.32
305 312 3.326006 GCATCTCCAGGTCCAATATGAGA 59.674 47.826 0.00 0.00 33.78 3.27
306 313 3.327172 AGCATCTCCAGGTCCAATATGAG 59.673 47.826 0.00 0.00 0.00 2.90
307 314 3.321039 AGCATCTCCAGGTCCAATATGA 58.679 45.455 0.00 0.00 0.00 2.15
308 315 3.784511 AGCATCTCCAGGTCCAATATG 57.215 47.619 0.00 0.00 0.00 1.78
309 316 4.414846 AGAAAGCATCTCCAGGTCCAATAT 59.585 41.667 0.00 0.00 30.46 1.28
310 317 3.782523 AGAAAGCATCTCCAGGTCCAATA 59.217 43.478 0.00 0.00 30.46 1.90
311 318 2.579860 AGAAAGCATCTCCAGGTCCAAT 59.420 45.455 0.00 0.00 30.46 3.16
312 319 1.988107 AGAAAGCATCTCCAGGTCCAA 59.012 47.619 0.00 0.00 30.46 3.53
313 320 1.661463 AGAAAGCATCTCCAGGTCCA 58.339 50.000 0.00 0.00 30.46 4.02
314 321 2.290577 ACAAGAAAGCATCTCCAGGTCC 60.291 50.000 0.00 0.00 37.42 4.46
315 322 3.064900 ACAAGAAAGCATCTCCAGGTC 57.935 47.619 0.00 0.00 37.42 3.85
316 323 3.152341 CAACAAGAAAGCATCTCCAGGT 58.848 45.455 0.00 0.00 37.42 4.00
317 324 2.490903 CCAACAAGAAAGCATCTCCAGG 59.509 50.000 0.00 0.00 37.42 4.45
318 325 3.152341 ACCAACAAGAAAGCATCTCCAG 58.848 45.455 0.00 0.00 37.42 3.86
319 326 3.228188 ACCAACAAGAAAGCATCTCCA 57.772 42.857 0.00 0.00 37.42 3.86
320 327 4.762251 ACTAACCAACAAGAAAGCATCTCC 59.238 41.667 0.00 0.00 37.42 3.71
321 328 5.335191 CCACTAACCAACAAGAAAGCATCTC 60.335 44.000 0.00 0.00 37.42 2.75
322 329 4.520492 CCACTAACCAACAAGAAAGCATCT 59.480 41.667 0.00 0.00 41.32 2.90
323 330 4.321230 CCCACTAACCAACAAGAAAGCATC 60.321 45.833 0.00 0.00 0.00 3.91
324 331 3.573967 CCCACTAACCAACAAGAAAGCAT 59.426 43.478 0.00 0.00 0.00 3.79
325 332 2.955660 CCCACTAACCAACAAGAAAGCA 59.044 45.455 0.00 0.00 0.00 3.91
326 333 2.288213 GCCCACTAACCAACAAGAAAGC 60.288 50.000 0.00 0.00 0.00 3.51
327 334 3.222603 AGCCCACTAACCAACAAGAAAG 58.777 45.455 0.00 0.00 0.00 2.62
328 335 3.306472 AGCCCACTAACCAACAAGAAA 57.694 42.857 0.00 0.00 0.00 2.52
329 336 4.440826 TTAGCCCACTAACCAACAAGAA 57.559 40.909 0.00 0.00 33.35 2.52
330 337 4.650972 ATTAGCCCACTAACCAACAAGA 57.349 40.909 0.00 0.00 41.12 3.02
331 338 5.336451 GGAAATTAGCCCACTAACCAACAAG 60.336 44.000 0.00 0.00 41.12 3.16
332 339 4.525100 GGAAATTAGCCCACTAACCAACAA 59.475 41.667 0.00 0.00 41.12 2.83
333 340 4.083565 GGAAATTAGCCCACTAACCAACA 58.916 43.478 0.00 0.00 41.12 3.33
334 341 4.341487 AGGAAATTAGCCCACTAACCAAC 58.659 43.478 0.00 0.00 41.12 3.77
335 342 4.668138 AGGAAATTAGCCCACTAACCAA 57.332 40.909 0.00 0.00 41.12 3.67
336 343 5.782677 TTAGGAAATTAGCCCACTAACCA 57.217 39.130 0.00 0.00 41.12 3.67
337 344 5.359009 GGTTTAGGAAATTAGCCCACTAACC 59.641 44.000 0.00 0.00 41.12 2.85
338 345 6.185511 AGGTTTAGGAAATTAGCCCACTAAC 58.814 40.000 0.00 0.00 41.12 2.34
339 346 6.397217 AGGTTTAGGAAATTAGCCCACTAA 57.603 37.500 0.00 0.00 42.47 2.24
340 347 6.397217 AAGGTTTAGGAAATTAGCCCACTA 57.603 37.500 0.00 0.00 0.00 2.74
341 348 4.948062 AGGTTTAGGAAATTAGCCCACT 57.052 40.909 0.00 0.00 0.00 4.00
342 349 5.995565 AAAGGTTTAGGAAATTAGCCCAC 57.004 39.130 0.00 0.00 0.00 4.61
375 385 8.375608 ACAGATAATGAATTGATCGAAAGGAG 57.624 34.615 0.00 0.00 0.00 3.69
381 391 8.146412 ACTCATGACAGATAATGAATTGATCGA 58.854 33.333 0.00 0.00 32.60 3.59
388 398 6.925718 CCGTGTACTCATGACAGATAATGAAT 59.074 38.462 0.00 0.00 32.60 2.57
394 404 3.315470 GCTCCGTGTACTCATGACAGATA 59.685 47.826 0.00 0.00 32.78 1.98
404 414 2.953466 TTATGGTGCTCCGTGTACTC 57.047 50.000 9.83 0.00 36.30 2.59
428 438 9.415544 GTCGTTAGGTGATATACGGATAATTTT 57.584 33.333 0.00 0.00 34.93 1.82
435 445 3.494626 GTCGTCGTTAGGTGATATACGGA 59.505 47.826 0.00 0.00 34.93 4.69
436 446 3.496130 AGTCGTCGTTAGGTGATATACGG 59.504 47.826 0.00 0.00 34.93 4.02
437 447 4.722203 AGTCGTCGTTAGGTGATATACG 57.278 45.455 0.00 0.00 35.46 3.06
438 448 6.530913 TGTAGTCGTCGTTAGGTGATATAC 57.469 41.667 0.00 0.00 0.00 1.47
439 449 6.293081 GCTTGTAGTCGTCGTTAGGTGATATA 60.293 42.308 0.00 0.00 0.00 0.86
441 451 4.201851 GCTTGTAGTCGTCGTTAGGTGATA 60.202 45.833 0.00 0.00 0.00 2.15
463 481 2.507324 GTCTTCGGACCGCTCTGC 60.507 66.667 9.66 0.00 38.93 4.26
466 484 3.701604 ATGCGTCTTCGGACCGCTC 62.702 63.158 9.66 0.00 41.62 5.03
471 491 1.298859 AAGGCAATGCGTCTTCGGAC 61.299 55.000 0.00 0.00 40.64 4.79
479 499 1.315257 GGGTGATGAAGGCAATGCGT 61.315 55.000 0.00 0.00 0.00 5.24
499 519 1.835494 TCTCAACTTCGACGAGGGAT 58.165 50.000 11.93 0.00 0.00 3.85
505 525 4.893795 ACAAGTTTTTCTCAACTTCGACG 58.106 39.130 0.00 0.00 43.75 5.12
506 526 4.956184 CGACAAGTTTTTCTCAACTTCGAC 59.044 41.667 2.83 0.00 43.75 4.20
508 528 4.893795 ACGACAAGTTTTTCTCAACTTCG 58.106 39.130 0.00 6.26 43.75 3.79
509 529 9.582223 CTATTACGACAAGTTTTTCTCAACTTC 57.418 33.333 0.00 0.00 43.75 3.01
510 530 9.321562 TCTATTACGACAAGTTTTTCTCAACTT 57.678 29.630 0.00 0.00 46.00 2.66
511 531 8.762426 GTCTATTACGACAAGTTTTTCTCAACT 58.238 33.333 0.00 0.00 38.74 3.16
513 533 8.651391 TGTCTATTACGACAAGTTTTTCTCAA 57.349 30.769 0.00 0.00 40.69 3.02
514 534 7.924412 ACTGTCTATTACGACAAGTTTTTCTCA 59.076 33.333 0.00 0.00 42.80 3.27
515 535 8.295569 ACTGTCTATTACGACAAGTTTTTCTC 57.704 34.615 0.00 0.00 42.80 2.87
516 536 8.548721 CAACTGTCTATTACGACAAGTTTTTCT 58.451 33.333 0.00 0.00 42.80 2.52
517 537 7.797123 CCAACTGTCTATTACGACAAGTTTTTC 59.203 37.037 0.00 0.00 42.80 2.29
518 538 7.496591 TCCAACTGTCTATTACGACAAGTTTTT 59.503 33.333 0.00 0.00 42.80 1.94
519 539 6.987992 TCCAACTGTCTATTACGACAAGTTTT 59.012 34.615 0.00 0.00 42.80 2.43
520 540 6.518493 TCCAACTGTCTATTACGACAAGTTT 58.482 36.000 0.00 0.00 42.80 2.66
521 541 6.092955 TCCAACTGTCTATTACGACAAGTT 57.907 37.500 0.00 0.00 42.80 2.66
522 542 5.717078 TCCAACTGTCTATTACGACAAGT 57.283 39.130 0.00 0.00 42.80 3.16
523 543 5.577164 CCTTCCAACTGTCTATTACGACAAG 59.423 44.000 0.00 0.00 42.80 3.16
524 544 5.011329 ACCTTCCAACTGTCTATTACGACAA 59.989 40.000 0.00 0.00 42.80 3.18
525 545 4.525487 ACCTTCCAACTGTCTATTACGACA 59.475 41.667 0.00 0.00 41.33 4.35
526 546 5.069501 ACCTTCCAACTGTCTATTACGAC 57.930 43.478 0.00 0.00 34.52 4.34
527 547 4.768448 TGACCTTCCAACTGTCTATTACGA 59.232 41.667 0.00 0.00 0.00 3.43
528 548 5.068234 TGACCTTCCAACTGTCTATTACG 57.932 43.478 0.00 0.00 0.00 3.18
529 549 5.817816 CCATGACCTTCCAACTGTCTATTAC 59.182 44.000 0.00 0.00 0.00 1.89
530 550 5.724370 TCCATGACCTTCCAACTGTCTATTA 59.276 40.000 0.00 0.00 0.00 0.98
531 551 4.536090 TCCATGACCTTCCAACTGTCTATT 59.464 41.667 0.00 0.00 0.00 1.73
532 552 4.104086 TCCATGACCTTCCAACTGTCTAT 58.896 43.478 0.00 0.00 0.00 1.98
533 553 3.516586 TCCATGACCTTCCAACTGTCTA 58.483 45.455 0.00 0.00 0.00 2.59
534 554 2.338809 TCCATGACCTTCCAACTGTCT 58.661 47.619 0.00 0.00 0.00 3.41
535 555 2.859165 TCCATGACCTTCCAACTGTC 57.141 50.000 0.00 0.00 0.00 3.51
536 556 3.814504 ATTCCATGACCTTCCAACTGT 57.185 42.857 0.00 0.00 0.00 3.55
537 557 6.780457 ATTTATTCCATGACCTTCCAACTG 57.220 37.500 0.00 0.00 0.00 3.16
538 558 7.184862 AGAATTTATTCCATGACCTTCCAACT 58.815 34.615 0.00 0.00 37.51 3.16
539 559 7.410120 AGAATTTATTCCATGACCTTCCAAC 57.590 36.000 0.00 0.00 37.51 3.77
540 560 8.434589 AAAGAATTTATTCCATGACCTTCCAA 57.565 30.769 0.00 0.00 35.86 3.53
541 561 8.434589 AAAAGAATTTATTCCATGACCTTCCA 57.565 30.769 0.00 0.00 37.28 3.53
542 562 7.702348 CGAAAAGAATTTATTCCATGACCTTCC 59.298 37.037 0.00 0.00 37.28 3.46
543 563 7.702348 CCGAAAAGAATTTATTCCATGACCTTC 59.298 37.037 0.00 0.00 37.28 3.46
544 564 7.396055 TCCGAAAAGAATTTATTCCATGACCTT 59.604 33.333 0.00 0.00 37.28 3.50
545 565 6.889722 TCCGAAAAGAATTTATTCCATGACCT 59.110 34.615 0.00 0.00 37.28 3.85
546 566 6.972901 GTCCGAAAAGAATTTATTCCATGACC 59.027 38.462 0.00 0.00 37.28 4.02
547 567 6.972901 GGTCCGAAAAGAATTTATTCCATGAC 59.027 38.462 0.00 0.00 37.28 3.06
548 568 6.889722 AGGTCCGAAAAGAATTTATTCCATGA 59.110 34.615 0.00 0.00 37.28 3.07
549 569 7.100458 AGGTCCGAAAAGAATTTATTCCATG 57.900 36.000 0.00 0.00 37.28 3.66
550 570 6.889722 TGAGGTCCGAAAAGAATTTATTCCAT 59.110 34.615 0.00 0.00 37.28 3.41
556 576 7.388500 ACGTTAATGAGGTCCGAAAAGAATTTA 59.612 33.333 0.58 0.00 37.28 1.40
562 582 6.470557 TTAACGTTAATGAGGTCCGAAAAG 57.529 37.500 16.59 0.00 0.00 2.27
563 583 5.106987 GCTTAACGTTAATGAGGTCCGAAAA 60.107 40.000 20.39 0.00 0.00 2.29
565 585 3.928375 GCTTAACGTTAATGAGGTCCGAA 59.072 43.478 20.39 0.00 0.00 4.30
567 587 3.518590 AGCTTAACGTTAATGAGGTCCG 58.481 45.455 20.39 8.04 0.00 4.79
568 588 6.200475 GTGATAGCTTAACGTTAATGAGGTCC 59.800 42.308 20.39 10.71 0.00 4.46
575 595 8.440833 GTGTTCTTGTGATAGCTTAACGTTAAT 58.559 33.333 20.39 9.96 0.00 1.40
579 599 5.294356 TGTGTTCTTGTGATAGCTTAACGT 58.706 37.500 0.00 0.00 0.00 3.99
586 606 7.898309 CGTAATTAGTTGTGTTCTTGTGATAGC 59.102 37.037 0.00 0.00 0.00 2.97
669 691 0.384309 GCATCCTGCATCATGGTGTG 59.616 55.000 8.00 0.00 44.26 3.82
689 711 1.228245 AAGTCCCAAGCACACGCAT 60.228 52.632 0.00 0.00 42.27 4.73
691 713 1.237285 ATGAAGTCCCAAGCACACGC 61.237 55.000 0.00 0.00 38.99 5.34
693 715 2.191128 AGATGAAGTCCCAAGCACAC 57.809 50.000 0.00 0.00 0.00 3.82
732 769 1.737363 CGCCCTCTCTTAGTCTTGTGC 60.737 57.143 0.00 0.00 0.00 4.57
744 781 5.695363 GGTTGATAATTAACTACGCCCTCTC 59.305 44.000 0.00 0.00 0.00 3.20
749 808 3.805971 AGCGGTTGATAATTAACTACGCC 59.194 43.478 17.95 6.66 38.54 5.68
759 818 4.406003 ACTCCTTAGTCAGCGGTTGATAAT 59.594 41.667 0.00 0.00 38.29 1.28
761 820 3.362706 ACTCCTTAGTCAGCGGTTGATA 58.637 45.455 0.00 0.00 38.29 2.15
762 821 2.180276 ACTCCTTAGTCAGCGGTTGAT 58.820 47.619 0.00 0.00 38.29 2.57
764 823 2.492484 AGTACTCCTTAGTCAGCGGTTG 59.508 50.000 0.00 0.00 37.15 3.77
765 824 2.754002 GAGTACTCCTTAGTCAGCGGTT 59.246 50.000 12.13 0.00 37.15 4.44
836 895 9.774413 CCCTCCGTAAACTAATATAAGAATGTT 57.226 33.333 0.00 0.00 0.00 2.71
837 896 9.151177 TCCCTCCGTAAACTAATATAAGAATGT 57.849 33.333 0.00 0.00 0.00 2.71
838 897 9.640963 CTCCCTCCGTAAACTAATATAAGAATG 57.359 37.037 0.00 0.00 0.00 2.67
839 898 9.377238 ACTCCCTCCGTAAACTAATATAAGAAT 57.623 33.333 0.00 0.00 0.00 2.40
840 899 8.773033 ACTCCCTCCGTAAACTAATATAAGAA 57.227 34.615 0.00 0.00 0.00 2.52
841 900 9.289782 GTACTCCCTCCGTAAACTAATATAAGA 57.710 37.037 0.00 0.00 0.00 2.10
842 901 9.071276 TGTACTCCCTCCGTAAACTAATATAAG 57.929 37.037 0.00 0.00 0.00 1.73
843 902 8.995027 TGTACTCCCTCCGTAAACTAATATAA 57.005 34.615 0.00 0.00 0.00 0.98
844 903 9.592196 AATGTACTCCCTCCGTAAACTAATATA 57.408 33.333 0.00 0.00 0.00 0.86
845 904 8.488308 AATGTACTCCCTCCGTAAACTAATAT 57.512 34.615 0.00 0.00 0.00 1.28
846 905 7.902920 AATGTACTCCCTCCGTAAACTAATA 57.097 36.000 0.00 0.00 0.00 0.98
847 906 6.803366 AATGTACTCCCTCCGTAAACTAAT 57.197 37.500 0.00 0.00 0.00 1.73
848 907 7.902920 ATAATGTACTCCCTCCGTAAACTAA 57.097 36.000 0.00 0.00 0.00 2.24
849 908 7.902920 AATAATGTACTCCCTCCGTAAACTA 57.097 36.000 0.00 0.00 0.00 2.24
850 909 6.803366 AATAATGTACTCCCTCCGTAAACT 57.197 37.500 0.00 0.00 0.00 2.66
851 910 9.852091 CTATAATAATGTACTCCCTCCGTAAAC 57.148 37.037 0.00 0.00 0.00 2.01
852 911 9.812347 TCTATAATAATGTACTCCCTCCGTAAA 57.188 33.333 0.00 0.00 0.00 2.01
853 912 9.812347 TTCTATAATAATGTACTCCCTCCGTAA 57.188 33.333 0.00 0.00 0.00 3.18
854 913 9.986157 ATTCTATAATAATGTACTCCCTCCGTA 57.014 33.333 0.00 0.00 0.00 4.02
855 914 8.896722 ATTCTATAATAATGTACTCCCTCCGT 57.103 34.615 0.00 0.00 0.00 4.69
877 936 3.731867 CGAGCCATTGCAGGTGTTAATTC 60.732 47.826 0.00 0.00 41.13 2.17
883 942 0.036164 TAACGAGCCATTGCAGGTGT 59.964 50.000 0.00 0.00 41.13 4.16
886 945 1.723870 GCTAACGAGCCATTGCAGG 59.276 57.895 0.00 0.00 43.49 4.85
891 950 0.036765 TCAACCGCTAACGAGCCATT 60.037 50.000 0.00 0.00 46.86 3.16
901 960 0.892755 AAGTGACCGATCAACCGCTA 59.107 50.000 0.00 0.00 36.31 4.26
922 981 4.134563 CTGTTATTAAGTGGGCGGCTAAT 58.865 43.478 9.56 7.65 0.00 1.73
923 982 3.537580 CTGTTATTAAGTGGGCGGCTAA 58.462 45.455 9.56 0.00 0.00 3.09
924 983 2.158871 CCTGTTATTAAGTGGGCGGCTA 60.159 50.000 9.56 0.00 0.00 3.93
927 986 2.561569 CTCCTGTTATTAAGTGGGCGG 58.438 52.381 0.00 0.00 0.00 6.13
928 987 2.093128 ACCTCCTGTTATTAAGTGGGCG 60.093 50.000 0.00 0.00 0.00 6.13
929 988 3.054655 TGACCTCCTGTTATTAAGTGGGC 60.055 47.826 0.00 0.00 0.00 5.36
930 989 4.469945 TCTGACCTCCTGTTATTAAGTGGG 59.530 45.833 0.00 0.00 0.00 4.61
942 1001 1.898472 TCTTGAGCTTCTGACCTCCTG 59.102 52.381 0.00 0.00 0.00 3.86
947 1006 3.080319 AGCAATTCTTGAGCTTCTGACC 58.920 45.455 0.00 0.00 34.37 4.02
960 1019 0.396435 TGTGGTGTCCGAGCAATTCT 59.604 50.000 0.00 0.00 32.64 2.40
974 1033 0.986019 TTGAGAGTGGGTGGTGTGGT 60.986 55.000 0.00 0.00 0.00 4.16
976 1035 2.154462 GATTTGAGAGTGGGTGGTGTG 58.846 52.381 0.00 0.00 0.00 3.82
977 1036 2.039084 GAGATTTGAGAGTGGGTGGTGT 59.961 50.000 0.00 0.00 0.00 4.16
978 1037 2.038952 TGAGATTTGAGAGTGGGTGGTG 59.961 50.000 0.00 0.00 0.00 4.17
979 1038 2.338809 TGAGATTTGAGAGTGGGTGGT 58.661 47.619 0.00 0.00 0.00 4.16
1224 1292 1.300620 CGAGGAGCCAACAACGACA 60.301 57.895 0.00 0.00 0.00 4.35
1398 1466 2.581953 CTCGCGCTGAAGAGCTCC 60.582 66.667 10.93 0.00 43.77 4.70
1525 1602 1.796982 CGAGATGACGTTCAGGCTCAG 60.797 57.143 0.00 0.00 33.81 3.35
1647 1727 1.901650 GCACGCCGTTGAGGAAGAAG 61.902 60.000 0.00 0.00 45.00 2.85
1926 2006 8.649973 ACTGATTACTGAATAACGGAAAGATC 57.350 34.615 0.00 0.00 0.00 2.75
1947 2028 2.307768 CCCTTCTGGCTCGTATACTGA 58.692 52.381 0.56 0.00 0.00 3.41
1948 2029 2.802787 CCCTTCTGGCTCGTATACTG 57.197 55.000 0.56 0.00 0.00 2.74
1986 2071 2.437897 CTCCCTTGCAACTGGCCT 59.562 61.111 3.32 0.00 43.89 5.19
1987 2072 3.376918 GCTCCCTTGCAACTGGCC 61.377 66.667 0.00 0.00 43.89 5.36
1988 2073 2.282745 AGCTCCCTTGCAACTGGC 60.283 61.111 0.00 0.00 45.13 4.85
1989 2074 1.676967 GGAGCTCCCTTGCAACTGG 60.677 63.158 23.19 0.00 34.99 4.00
1990 2075 3.993535 GGAGCTCCCTTGCAACTG 58.006 61.111 23.19 0.00 34.99 3.16
2059 2149 5.473504 GCATTTTTCTGGAACCTCTCTAACA 59.526 40.000 0.00 0.00 0.00 2.41
2089 2183 9.700831 AGCATAACCTGATAAGTTCCTTTAATT 57.299 29.630 0.00 0.00 0.00 1.40
2090 2184 9.125026 CAGCATAACCTGATAAGTTCCTTTAAT 57.875 33.333 0.00 0.00 34.77 1.40
2205 2299 2.959484 CGACATGGCCCACTCCACT 61.959 63.158 0.00 0.00 39.25 4.00
2277 2371 4.308458 CGTTCTCGCCCCACCACA 62.308 66.667 0.00 0.00 0.00 4.17
2321 2415 1.149401 GCCTCCACATAGGGAAGGC 59.851 63.158 1.96 1.96 41.06 4.35
2517 2611 3.110178 CTGCCGACGAACCGTTCC 61.110 66.667 5.67 0.00 41.37 3.62
2541 2635 0.994247 AGTCATGCCCCTTGATGTCA 59.006 50.000 0.00 0.00 0.00 3.58
2686 2780 1.670949 ATGCTCAGCTGATCCGTCGT 61.671 55.000 18.63 3.18 0.00 4.34
2816 3059 1.268079 GACTTGGGAAGCACAAGAAGC 59.732 52.381 15.65 2.08 46.27 3.86
2839 3082 1.969256 CGCAACACAAGAACGCAATAC 59.031 47.619 0.00 0.00 0.00 1.89
2845 3088 2.124903 ACTCTACGCAACACAAGAACG 58.875 47.619 0.00 0.00 0.00 3.95
2873 3116 7.896383 TCCATCGAATCTTCCCATTATTTTT 57.104 32.000 0.00 0.00 0.00 1.94
2923 3169 3.753294 ATAGACGTCAAATGCCCCTAG 57.247 47.619 19.50 0.00 0.00 3.02
3059 3305 2.662866 CAAGATGGTGGATTCAGGCAT 58.337 47.619 0.00 0.00 0.00 4.40
3156 3404 2.061028 GGCTTTCGGCTTTTGATGTTG 58.939 47.619 0.00 0.00 41.46 3.33
3343 3592 4.379243 CGCGCAGGAGGAGGTTGT 62.379 66.667 8.75 0.00 0.00 3.32
3388 3637 2.515523 GCATGGCGCTGTGGAGAT 60.516 61.111 7.64 0.00 37.77 2.75
3425 3674 3.496884 GCGGTGTTTCATCTCACACTTTA 59.503 43.478 2.69 0.00 42.57 1.85
3457 3707 4.586421 AGATCGATGGAAGCATCAGAACTA 59.414 41.667 0.54 0.00 0.00 2.24
3458 3708 3.387374 AGATCGATGGAAGCATCAGAACT 59.613 43.478 0.54 0.00 0.00 3.01
3459 3709 3.726607 AGATCGATGGAAGCATCAGAAC 58.273 45.455 0.54 0.00 0.00 3.01
3460 3710 3.244009 GGAGATCGATGGAAGCATCAGAA 60.244 47.826 0.54 0.00 0.00 3.02
3461 3711 2.298446 GGAGATCGATGGAAGCATCAGA 59.702 50.000 0.54 0.00 0.00 3.27
3462 3712 2.686235 GGAGATCGATGGAAGCATCAG 58.314 52.381 0.54 0.00 0.00 2.90
3463 3713 1.000171 CGGAGATCGATGGAAGCATCA 60.000 52.381 0.54 0.00 42.43 3.07
3464 3714 1.000283 ACGGAGATCGATGGAAGCATC 60.000 52.381 0.54 0.00 42.43 3.91
3465 3715 1.000283 GACGGAGATCGATGGAAGCAT 60.000 52.381 0.54 0.00 42.43 3.79
3466 3716 0.385751 GACGGAGATCGATGGAAGCA 59.614 55.000 0.54 0.00 42.43 3.91
3467 3717 0.385751 TGACGGAGATCGATGGAAGC 59.614 55.000 0.54 0.00 42.43 3.86
3468 3718 1.269309 GGTGACGGAGATCGATGGAAG 60.269 57.143 0.54 0.00 42.43 3.46
3469 3719 0.744874 GGTGACGGAGATCGATGGAA 59.255 55.000 0.54 0.00 42.43 3.53
3470 3720 0.395173 TGGTGACGGAGATCGATGGA 60.395 55.000 0.54 0.00 42.43 3.41
3471 3721 0.676184 ATGGTGACGGAGATCGATGG 59.324 55.000 0.54 0.00 42.43 3.51
3472 3722 2.515926 AATGGTGACGGAGATCGATG 57.484 50.000 0.54 0.00 42.43 3.84
3473 3723 4.524714 AGATAAATGGTGACGGAGATCGAT 59.475 41.667 0.00 0.00 42.43 3.59
3474 3724 3.889538 AGATAAATGGTGACGGAGATCGA 59.110 43.478 0.00 0.00 42.43 3.59
3475 3725 4.230657 GAGATAAATGGTGACGGAGATCG 58.769 47.826 0.00 0.00 45.88 3.69
3476 3726 4.230657 CGAGATAAATGGTGACGGAGATC 58.769 47.826 0.00 0.00 0.00 2.75
3477 3727 3.637229 ACGAGATAAATGGTGACGGAGAT 59.363 43.478 0.00 0.00 0.00 2.75
3478 3728 3.021695 ACGAGATAAATGGTGACGGAGA 58.978 45.455 0.00 0.00 0.00 3.71
3479 3729 3.438297 ACGAGATAAATGGTGACGGAG 57.562 47.619 0.00 0.00 0.00 4.63
3480 3730 3.446161 AGAACGAGATAAATGGTGACGGA 59.554 43.478 0.00 0.00 0.00 4.69
3481 3731 3.551890 CAGAACGAGATAAATGGTGACGG 59.448 47.826 0.00 0.00 0.00 4.79
3482 3732 4.421058 TCAGAACGAGATAAATGGTGACG 58.579 43.478 0.00 0.00 0.00 4.35
3483 3733 5.277058 GCATCAGAACGAGATAAATGGTGAC 60.277 44.000 0.00 0.00 0.00 3.67
3484 3734 4.811024 GCATCAGAACGAGATAAATGGTGA 59.189 41.667 0.00 0.00 0.00 4.02
3485 3735 4.813161 AGCATCAGAACGAGATAAATGGTG 59.187 41.667 0.00 0.00 0.00 4.17
3486 3736 5.028549 AGCATCAGAACGAGATAAATGGT 57.971 39.130 0.00 0.00 0.00 3.55
3487 3737 5.049818 GGAAGCATCAGAACGAGATAAATGG 60.050 44.000 0.00 0.00 0.00 3.16
3488 3738 5.525012 TGGAAGCATCAGAACGAGATAAATG 59.475 40.000 0.00 0.00 0.00 2.32
3489 3739 5.674525 TGGAAGCATCAGAACGAGATAAAT 58.325 37.500 0.00 0.00 0.00 1.40
3501 3751 4.978083 AGCACTTTAATGGAAGCATCAG 57.022 40.909 0.00 0.00 0.00 2.90
3510 3760 6.332630 CCTTCCATGTTAAGCACTTTAATGG 58.667 40.000 10.29 10.29 34.67 3.16
3512 3762 5.105351 GCCCTTCCATGTTAAGCACTTTAAT 60.105 40.000 0.00 0.00 33.99 1.40
3513 3763 4.219725 GCCCTTCCATGTTAAGCACTTTAA 59.780 41.667 0.00 0.00 0.00 1.52
3515 3765 2.562738 GCCCTTCCATGTTAAGCACTTT 59.437 45.455 0.00 0.00 0.00 2.66
3516 3766 2.171003 GCCCTTCCATGTTAAGCACTT 58.829 47.619 0.00 0.00 0.00 3.16
3528 3778 1.987807 GAGCTAGCCATGCCCTTCCA 61.988 60.000 12.13 0.00 0.00 3.53
3529 3779 1.228094 GAGCTAGCCATGCCCTTCC 60.228 63.158 12.13 0.00 0.00 3.46
3530 3780 1.051812 TAGAGCTAGCCATGCCCTTC 58.948 55.000 12.13 0.00 0.00 3.46
3536 3786 6.772360 TCATCTAGATTAGAGCTAGCCATG 57.228 41.667 12.13 1.11 38.38 3.66
3537 3787 7.789202 TTTCATCTAGATTAGAGCTAGCCAT 57.211 36.000 12.13 2.38 38.38 4.40
3590 3840 8.110860 ACAAGTCTCTATGTAAAACCAAATGG 57.889 34.615 0.00 0.00 42.17 3.16
3597 3847 7.521509 ACGCATACAAGTCTCTATGTAAAAC 57.478 36.000 0.00 0.00 35.79 2.43
3600 3850 8.542497 AAAAACGCATACAAGTCTCTATGTAA 57.458 30.769 0.00 0.00 35.79 2.41
3603 3853 7.060600 TGAAAAACGCATACAAGTCTCTATG 57.939 36.000 0.00 0.00 0.00 2.23
3606 3856 6.560253 AATGAAAAACGCATACAAGTCTCT 57.440 33.333 0.00 0.00 0.00 3.10
3711 3961 3.876914 CCGGCTTCATTGCTAGAATGTAA 59.123 43.478 0.00 0.00 0.00 2.41
3713 3963 2.292267 CCGGCTTCATTGCTAGAATGT 58.708 47.619 0.00 0.00 0.00 2.71
3720 3970 2.262774 CTCTCCCCGGCTTCATTGCT 62.263 60.000 0.00 0.00 0.00 3.91
3722 3972 1.821332 GCTCTCCCCGGCTTCATTG 60.821 63.158 0.00 0.00 0.00 2.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.