Multiple sequence alignment - TraesCS2A01G427800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G427800 chr2A 100.000 9003 0 0 1 9003 680371424 680362422 0.000000e+00 16626
1 TraesCS2A01G427800 chr2A 87.385 325 41 0 3351 3675 680367750 680367426 3.070000e-99 374
2 TraesCS2A01G427800 chr2A 87.385 325 41 0 3675 3999 680368074 680367750 3.070000e-99 374
3 TraesCS2A01G427800 chr2A 88.889 117 13 0 3052 3168 680368259 680368143 2.620000e-30 145
4 TraesCS2A01G427800 chr2A 88.889 117 13 0 3166 3282 680368373 680368257 2.620000e-30 145
5 TraesCS2A01G427800 chr2B 93.787 7629 265 72 661 8188 640991124 640983604 0.000000e+00 11269
6 TraesCS2A01G427800 chr2B 85.917 845 61 28 8199 9003 640981938 640981112 0.000000e+00 848
7 TraesCS2A01G427800 chr2B 84.118 510 64 10 1 503 640991732 640991233 2.270000e-130 477
8 TraesCS2A01G427800 chr2B 76.993 439 89 9 1 431 163562092 163562526 3.250000e-59 241
9 TraesCS2A01G427800 chr2B 88.889 117 13 0 3052 3168 640988626 640988510 2.620000e-30 145
10 TraesCS2A01G427800 chr2B 88.889 117 13 0 3166 3282 640988740 640988624 2.620000e-30 145
11 TraesCS2A01G427800 chr2D 95.556 6526 185 33 726 7201 538069110 538062640 0.000000e+00 10347
12 TraesCS2A01G427800 chr2D 88.972 1741 97 45 7315 9003 538062289 538060592 0.000000e+00 2063
13 TraesCS2A01G427800 chr2D 87.077 325 42 0 3351 3675 538066168 538065844 1.430000e-97 368
14 TraesCS2A01G427800 chr2D 87.077 325 42 0 3675 3999 538066492 538066168 1.430000e-97 368
15 TraesCS2A01G427800 chr2D 88.034 117 14 0 3052 3168 538066677 538066561 1.220000e-28 139
16 TraesCS2A01G427800 chr2D 88.034 117 14 0 3166 3282 538066791 538066675 1.220000e-28 139
17 TraesCS2A01G427800 chr6D 86.813 455 31 6 6926 7354 438125465 438125014 1.760000e-131 481
18 TraesCS2A01G427800 chr3D 83.589 457 68 5 1 451 24569257 24569712 1.080000e-113 422
19 TraesCS2A01G427800 chr7A 83.040 454 69 6 1 447 10359300 10359752 1.090000e-108 405
20 TraesCS2A01G427800 chr7A 90.106 283 19 4 6926 7202 22644423 22644702 8.590000e-95 359
21 TraesCS2A01G427800 chr7A 76.890 463 84 18 1 447 670686171 670686626 3.250000e-59 241
22 TraesCS2A01G427800 chr7A 87.730 163 12 1 7200 7354 22644734 22644896 5.550000e-42 183
23 TraesCS2A01G427800 chr7D 91.930 285 16 3 6924 7202 50325935 50326218 8.470000e-105 392
24 TraesCS2A01G427800 chr7D 77.263 453 90 7 7 451 25058424 25057977 4.170000e-63 254
25 TraesCS2A01G427800 chr7D 88.095 168 12 1 7196 7355 50326246 50326413 9.220000e-45 193
26 TraesCS2A01G427800 chr1A 90.106 283 19 4 6926 7202 67650582 67650861 8.590000e-95 359
27 TraesCS2A01G427800 chr1A 86.228 167 15 1 7196 7354 67650889 67651055 3.340000e-39 174
28 TraesCS2A01G427800 chr6B 89.046 283 22 4 6926 7202 698552868 698552589 8.660000e-90 342
29 TraesCS2A01G427800 chr6B 86.585 164 14 1 7199 7354 698552558 698552395 3.340000e-39 174
30 TraesCS2A01G427800 chr4D 77.996 459 82 17 1 447 99207163 99207614 4.140000e-68 270
31 TraesCS2A01G427800 chr1B 79.284 391 71 10 1 384 47628083 47628470 1.930000e-66 265
32 TraesCS2A01G427800 chrUn 76.623 462 86 18 1 447 434813945 434814399 1.510000e-57 235


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G427800 chr2A 680362422 680371424 9002 True 3532.800000 16626 90.5096 1 9003 5 chr2A.!!$R1 9002
1 TraesCS2A01G427800 chr2B 640981112 640991732 10620 True 2576.800000 11269 88.3200 1 9003 5 chr2B.!!$R1 9002
2 TraesCS2A01G427800 chr2D 538060592 538069110 8518 True 2237.333333 10347 89.1250 726 9003 6 chr2D.!!$R1 8277

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
530 564 0.251608 AATTTTGAGGACGGGGGTGG 60.252 55.000 0.00 0.00 0.00 4.61 F
645 679 0.388907 CAAAGGGTTGCATTGGAGCG 60.389 55.000 0.00 0.00 37.31 5.03 F
992 1036 0.389166 AGAACAGTAGCGCTCACAGC 60.389 55.000 16.34 0.00 38.02 4.40 F
1828 1875 0.036010 CAGAGTTGAGGATTGCCGGT 60.036 55.000 1.90 0.00 39.96 5.28 F
2113 2188 0.814457 GTCGATCTCTGACTGGCTGT 59.186 55.000 0.00 0.00 33.54 4.40 F
2982 3078 0.464373 GCCCATTCATTCAGAGCCGA 60.464 55.000 0.00 0.00 0.00 5.54 F
3503 3614 0.107456 CTACCGAGCATGGGCAGATT 59.893 55.000 0.00 0.00 44.61 2.40 F
4367 4478 1.122019 AGAACCACTCGGAGCAGGTT 61.122 55.000 26.21 26.21 46.39 3.50 F
4781 4892 1.281656 GTAACTGTTGTGCCGCCAC 59.718 57.895 2.69 0.00 42.40 5.01 F
6308 6421 0.323629 ATGGGTCCGTTGTGTCGATT 59.676 50.000 0.00 0.00 0.00 3.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1490 1534 0.168128 GCATCGTAGCAACAACCACC 59.832 55.000 0.0 0.0 0.00 4.61 R
1727 1773 0.249398 AAAATCGTGGAGACGGGGAG 59.751 55.000 0.0 0.0 46.11 4.30 R
2977 3073 0.179032 TTGTTGTCCATGTGTCGGCT 60.179 50.000 0.0 0.0 0.00 5.52 R
2978 3074 0.881118 ATTGTTGTCCATGTGTCGGC 59.119 50.000 0.0 0.0 0.00 5.54 R
3365 3476 1.350684 TCTGTGGGCATAACTTGAGCA 59.649 47.619 0.0 0.0 0.00 4.26 R
4367 4478 1.290324 GCTGTGAGGCTTGAGTCGA 59.710 57.895 0.0 0.0 0.00 4.20 R
5218 5331 0.389391 ACGGCCGATAATGAGTCCTG 59.611 55.000 35.9 0.0 0.00 3.86 R
5566 5679 1.097232 TGCATCCTGAAATTGCTCGG 58.903 50.000 0.0 0.0 37.28 4.63 R
6773 6886 2.354259 CTCCTGTGTGAATCTTGGCTC 58.646 52.381 0.0 0.0 0.00 4.70 R
8217 10316 0.179111 GATGAGACGATCCAACGCCA 60.179 55.000 0.0 0.0 36.70 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.087906 TTCTTCCCGCCTAGCCCC 61.088 66.667 0.00 0.00 0.00 5.80
73 74 4.329545 TTGAGGGCGTGTGGAGGC 62.330 66.667 0.00 0.00 0.00 4.70
80 81 2.029073 CGTGTGGAGGCGTGTCTT 59.971 61.111 0.00 0.00 0.00 3.01
91 92 1.352156 GCGTGTCTTCGGCGAATCTT 61.352 55.000 23.96 0.00 0.00 2.40
95 96 1.270094 TGTCTTCGGCGAATCTTGTGT 60.270 47.619 23.96 0.00 0.00 3.72
107 108 0.669318 TCTTGTGTGATTCGGTCGGC 60.669 55.000 0.00 0.00 0.00 5.54
115 116 1.963190 GATTCGGTCGGCGTTTGTCC 61.963 60.000 6.85 2.47 0.00 4.02
117 118 3.110178 CGGTCGGCGTTTGTCCTC 61.110 66.667 6.85 0.00 0.00 3.71
119 120 1.301479 GGTCGGCGTTTGTCCTCTT 60.301 57.895 6.85 0.00 0.00 2.85
130 131 4.480480 TCCTCTTTGGATCCGCCT 57.520 55.556 7.39 0.00 40.56 5.52
131 132 1.907739 TCCTCTTTGGATCCGCCTG 59.092 57.895 7.39 0.00 40.56 4.85
132 133 0.617535 TCCTCTTTGGATCCGCCTGA 60.618 55.000 7.39 2.00 40.56 3.86
133 134 0.253044 CCTCTTTGGATCCGCCTGAA 59.747 55.000 7.39 0.00 38.35 3.02
134 135 1.133976 CCTCTTTGGATCCGCCTGAAT 60.134 52.381 7.39 0.00 38.35 2.57
135 136 2.216898 CTCTTTGGATCCGCCTGAATC 58.783 52.381 7.39 0.00 37.63 2.52
136 137 1.134098 TCTTTGGATCCGCCTGAATCC 60.134 52.381 7.39 0.00 37.63 3.01
137 138 0.463654 TTTGGATCCGCCTGAATCCG 60.464 55.000 7.39 0.00 36.02 4.18
138 139 2.031163 GGATCCGCCTGAATCCGG 59.969 66.667 0.00 0.00 45.64 5.14
139 140 2.808206 GGATCCGCCTGAATCCGGT 61.808 63.158 0.00 0.00 44.63 5.28
140 141 1.301009 GATCCGCCTGAATCCGGTC 60.301 63.158 0.00 0.00 44.63 4.79
141 142 1.749334 GATCCGCCTGAATCCGGTCT 61.749 60.000 0.00 0.00 44.63 3.85
142 143 1.338136 ATCCGCCTGAATCCGGTCTT 61.338 55.000 0.00 0.00 44.63 3.01
143 144 1.521681 CCGCCTGAATCCGGTCTTC 60.522 63.158 0.00 6.96 39.67 2.87
144 145 1.218047 CGCCTGAATCCGGTCTTCA 59.782 57.895 17.32 17.32 0.00 3.02
153 154 2.288961 TCCGGTCTTCATTCGCTTAC 57.711 50.000 0.00 0.00 0.00 2.34
164 165 1.762419 TTCGCTTACGTCTGTGTGTC 58.238 50.000 0.00 0.00 41.18 3.67
167 168 1.419374 GCTTACGTCTGTGTGTCTGG 58.581 55.000 0.00 0.00 0.00 3.86
171 172 1.373497 CGTCTGTGTGTCTGGAGGC 60.373 63.158 0.00 0.00 0.00 4.70
177 178 0.326264 GTGTGTCTGGAGGCTGGATT 59.674 55.000 0.00 0.00 0.00 3.01
182 183 1.134250 GTCTGGAGGCTGGATTCTTCC 60.134 57.143 0.00 0.00 42.94 3.46
186 187 1.270571 GGAGGCTGGATTCTTCCGATC 60.271 57.143 0.00 0.00 45.89 3.69
190 191 4.678256 AGGCTGGATTCTTCCGATCTATA 58.322 43.478 0.00 0.00 45.89 1.31
204 205 6.465084 TCCGATCTATACTTCTCTTCATCGA 58.535 40.000 0.00 0.00 35.08 3.59
209 210 2.529136 ACTTCTCTTCATCGACGACG 57.471 50.000 0.00 0.00 41.26 5.12
223 227 0.386476 ACGACGGTTGTTCTAGTGCA 59.614 50.000 0.00 0.00 0.00 4.57
237 241 0.252696 AGTGCACTGGTCCTATGGGA 60.253 55.000 20.97 0.00 39.70 4.37
250 254 4.806892 TCCTATGGGACCTTATTACGACA 58.193 43.478 0.00 0.00 36.57 4.35
257 261 4.081254 GGGACCTTATTACGACAACTTCCT 60.081 45.833 0.00 0.00 0.00 3.36
265 269 0.314302 CGACAACTTCCTGACCGTCT 59.686 55.000 0.00 0.00 0.00 4.18
276 280 3.254166 TCCTGACCGTCTACTACAACAAC 59.746 47.826 0.00 0.00 0.00 3.32
277 281 3.005050 CCTGACCGTCTACTACAACAACA 59.995 47.826 0.00 0.00 0.00 3.33
286 290 2.577700 ACTACAACAACATTTGCCCGA 58.422 42.857 0.00 0.00 0.00 5.14
290 294 1.608590 CAACAACATTTGCCCGACTCT 59.391 47.619 0.00 0.00 0.00 3.24
297 301 1.176619 TTTGCCCGACTCTGACGAGA 61.177 55.000 0.00 0.00 39.74 4.04
310 314 2.065906 GACGAGAGAGGGGCGATGAC 62.066 65.000 0.00 0.00 0.00 3.06
333 338 2.512515 GCGCATTCGGCTTCCTCT 60.513 61.111 0.30 0.00 41.67 3.69
345 350 2.545731 GCTTCCTCTAGTGCTTGTAGC 58.454 52.381 0.00 0.00 42.82 3.58
346 351 2.167487 GCTTCCTCTAGTGCTTGTAGCT 59.833 50.000 0.00 0.00 42.97 3.32
347 352 3.779759 CTTCCTCTAGTGCTTGTAGCTG 58.220 50.000 0.00 0.00 42.97 4.24
348 353 1.478510 TCCTCTAGTGCTTGTAGCTGC 59.521 52.381 0.00 0.00 42.97 5.25
365 370 3.759544 CCGCTAGATGGCCTACGA 58.240 61.111 3.32 0.00 0.00 3.43
371 376 0.750850 TAGATGGCCTACGAACCTGC 59.249 55.000 3.32 0.00 0.00 4.85
427 432 9.911788 ACTACCTTCACAATTGATGAATAGATT 57.088 29.630 22.01 11.71 35.57 2.40
429 434 8.812513 ACCTTCACAATTGATGAATAGATTGA 57.187 30.769 13.59 0.00 35.57 2.57
440 445 9.869757 TTGATGAATAGATTGAAAGTTACTCGA 57.130 29.630 0.00 0.00 0.00 4.04
462 469 2.185004 AAAAGAGGGACGTGTCATGG 57.815 50.000 0.00 0.00 0.00 3.66
521 555 6.375736 TCGCCATTTGTATGTAATTTTGAGGA 59.624 34.615 0.00 0.00 0.00 3.71
522 556 6.472163 CGCCATTTGTATGTAATTTTGAGGAC 59.528 38.462 0.00 0.00 0.00 3.85
524 558 6.972328 CCATTTGTATGTAATTTTGAGGACGG 59.028 38.462 0.00 0.00 0.00 4.79
528 562 1.706305 TGTAATTTTGAGGACGGGGGT 59.294 47.619 0.00 0.00 0.00 4.95
529 563 2.089201 GTAATTTTGAGGACGGGGGTG 58.911 52.381 0.00 0.00 0.00 4.61
530 564 0.251608 AATTTTGAGGACGGGGGTGG 60.252 55.000 0.00 0.00 0.00 4.61
531 565 2.781431 ATTTTGAGGACGGGGGTGGC 62.781 60.000 0.00 0.00 0.00 5.01
551 585 4.995058 GGGTGGTGGGGTGGAGGA 62.995 72.222 0.00 0.00 0.00 3.71
559 593 1.982958 GTGGGGTGGAGGAGAGTAAAA 59.017 52.381 0.00 0.00 0.00 1.52
572 606 4.043037 AGAGTAAAAGGATAAGACGCGG 57.957 45.455 12.47 0.00 0.00 6.46
574 608 1.596260 GTAAAAGGATAAGACGCGGCC 59.404 52.381 9.25 0.00 0.00 6.13
584 618 2.826738 ACGCGGCCTGTGTTGTTT 60.827 55.556 12.47 0.00 38.41 2.83
590 624 0.668535 GGCCTGTGTTGTTTCCTCAC 59.331 55.000 0.00 0.00 0.00 3.51
600 634 2.874014 TGTTTCCTCACATTGCCATGA 58.126 42.857 4.52 0.00 34.11 3.07
601 635 3.229293 TGTTTCCTCACATTGCCATGAA 58.771 40.909 4.52 0.00 34.11 2.57
602 636 3.256383 TGTTTCCTCACATTGCCATGAAG 59.744 43.478 4.52 1.88 34.11 3.02
603 637 3.438216 TTCCTCACATTGCCATGAAGA 57.562 42.857 4.52 1.64 34.11 2.87
604 638 3.438216 TCCTCACATTGCCATGAAGAA 57.562 42.857 4.52 0.00 34.11 2.52
605 639 3.084039 TCCTCACATTGCCATGAAGAAC 58.916 45.455 4.52 0.00 34.11 3.01
606 640 2.159476 CCTCACATTGCCATGAAGAACG 60.159 50.000 4.52 0.00 34.11 3.95
607 641 2.743664 CTCACATTGCCATGAAGAACGA 59.256 45.455 4.52 0.00 34.11 3.85
608 642 3.145286 TCACATTGCCATGAAGAACGAA 58.855 40.909 4.52 0.00 34.11 3.85
609 643 3.058293 TCACATTGCCATGAAGAACGAAC 60.058 43.478 4.52 0.00 34.11 3.95
610 644 2.095768 ACATTGCCATGAAGAACGAACG 60.096 45.455 4.52 0.00 34.11 3.95
611 645 1.588674 TTGCCATGAAGAACGAACGT 58.411 45.000 0.00 0.00 0.00 3.99
612 646 1.588674 TGCCATGAAGAACGAACGTT 58.411 45.000 12.30 12.30 41.54 3.99
613 647 5.418115 CATTGCCATGAAGAACGAACGTTC 61.418 45.833 25.77 25.77 42.38 3.95
624 658 1.710418 CGAACGTTCGTGTTGTTCAC 58.290 50.000 35.92 3.94 45.09 3.18
625 659 1.322338 CGAACGTTCGTGTTGTTCACT 59.678 47.619 35.92 0.00 45.09 3.41
626 660 2.593582 CGAACGTTCGTGTTGTTCACTC 60.594 50.000 35.92 3.33 45.09 3.51
627 661 1.999048 ACGTTCGTGTTGTTCACTCA 58.001 45.000 0.00 0.00 44.16 3.41
628 662 2.339418 ACGTTCGTGTTGTTCACTCAA 58.661 42.857 0.00 0.00 44.16 3.02
629 663 2.737783 ACGTTCGTGTTGTTCACTCAAA 59.262 40.909 0.00 0.00 44.16 2.69
630 664 3.181524 ACGTTCGTGTTGTTCACTCAAAG 60.182 43.478 0.00 0.00 44.16 2.77
631 665 3.680789 GTTCGTGTTGTTCACTCAAAGG 58.319 45.455 0.00 0.00 44.16 3.11
632 666 2.285083 TCGTGTTGTTCACTCAAAGGG 58.715 47.619 0.00 0.00 44.16 3.95
633 667 2.014128 CGTGTTGTTCACTCAAAGGGT 58.986 47.619 0.00 0.00 44.16 4.34
634 668 2.422127 CGTGTTGTTCACTCAAAGGGTT 59.578 45.455 0.00 0.00 44.16 4.11
635 669 3.730662 CGTGTTGTTCACTCAAAGGGTTG 60.731 47.826 0.00 0.00 44.16 3.77
636 670 2.165437 TGTTGTTCACTCAAAGGGTTGC 59.835 45.455 0.00 0.00 34.50 4.17
637 671 2.136298 TGTTCACTCAAAGGGTTGCA 57.864 45.000 0.00 0.00 34.50 4.08
638 672 2.665165 TGTTCACTCAAAGGGTTGCAT 58.335 42.857 0.00 0.00 34.50 3.96
639 673 3.030291 TGTTCACTCAAAGGGTTGCATT 58.970 40.909 0.00 0.00 34.50 3.56
640 674 3.181477 TGTTCACTCAAAGGGTTGCATTG 60.181 43.478 0.00 0.00 34.50 2.82
641 675 1.962807 TCACTCAAAGGGTTGCATTGG 59.037 47.619 0.00 0.00 34.50 3.16
642 676 1.962807 CACTCAAAGGGTTGCATTGGA 59.037 47.619 0.00 0.00 34.50 3.53
643 677 2.029649 CACTCAAAGGGTTGCATTGGAG 60.030 50.000 1.34 1.34 34.50 3.86
644 678 0.968405 TCAAAGGGTTGCATTGGAGC 59.032 50.000 0.00 0.00 34.50 4.70
645 679 0.388907 CAAAGGGTTGCATTGGAGCG 60.389 55.000 0.00 0.00 37.31 5.03
646 680 0.539438 AAAGGGTTGCATTGGAGCGA 60.539 50.000 0.00 0.00 37.31 4.93
647 681 0.539438 AAGGGTTGCATTGGAGCGAA 60.539 50.000 0.00 0.00 37.31 4.70
648 682 1.212751 GGGTTGCATTGGAGCGAAC 59.787 57.895 0.00 0.00 37.31 3.95
649 683 1.154225 GGTTGCATTGGAGCGAACG 60.154 57.895 0.00 0.00 37.31 3.95
650 684 1.797537 GTTGCATTGGAGCGAACGC 60.798 57.895 11.31 11.31 42.33 4.84
651 685 2.976840 TTGCATTGGAGCGAACGCC 61.977 57.895 15.44 7.27 43.17 5.68
652 686 3.430862 GCATTGGAGCGAACGCCA 61.431 61.111 15.44 4.90 44.92 5.69
656 690 3.342627 TGGAGCGAACGCCAAACG 61.343 61.111 15.44 0.00 43.48 3.60
670 704 1.906333 AAACGGCAACCCCATGACC 60.906 57.895 0.00 0.00 0.00 4.02
671 705 2.648613 AAACGGCAACCCCATGACCA 62.649 55.000 0.00 0.00 0.00 4.02
688 722 4.396522 TGACCATTGTCATGTGTCATTCA 58.603 39.130 0.00 0.00 46.40 2.57
691 725 7.593197 GACCATTGTCATGTGTCATTCACGG 62.593 48.000 0.00 0.00 43.98 4.94
709 749 3.067106 ACGGTCAAACACATCACAGATC 58.933 45.455 0.00 0.00 0.00 2.75
724 764 7.120285 ACATCACAGATCATTCGTTCAGAAAAT 59.880 33.333 0.00 0.00 42.91 1.82
732 772 5.709631 TCATTCGTTCAGAAAATCATTCCCA 59.290 36.000 0.00 0.00 42.91 4.37
734 774 5.371115 TCGTTCAGAAAATCATTCCCAAC 57.629 39.130 0.00 0.00 0.00 3.77
739 782 4.824537 TCAGAAAATCATTCCCAACAACGA 59.175 37.500 0.00 0.00 0.00 3.85
749 792 1.860950 CCCAACAACGATCGCTCTATG 59.139 52.381 16.60 9.24 0.00 2.23
751 794 3.384668 CCAACAACGATCGCTCTATGAT 58.615 45.455 16.60 0.00 0.00 2.45
753 796 4.982295 CCAACAACGATCGCTCTATGATAA 59.018 41.667 16.60 0.00 0.00 1.75
757 800 5.635280 ACAACGATCGCTCTATGATAATTGG 59.365 40.000 16.60 0.00 30.57 3.16
763 806 6.060028 TCGCTCTATGATAATTGGCAAAAC 57.940 37.500 3.01 0.00 0.00 2.43
764 807 5.822519 TCGCTCTATGATAATTGGCAAAACT 59.177 36.000 3.01 0.00 0.00 2.66
781 824 6.120157 GCAAAACTAAAAGTTGCGAAATGTC 58.880 36.000 0.00 0.00 38.66 3.06
803 846 3.257393 GACGACTCTGCATGAGATTTGT 58.743 45.455 16.81 1.31 45.39 2.83
804 847 2.998670 ACGACTCTGCATGAGATTTGTG 59.001 45.455 16.81 5.46 45.39 3.33
806 849 3.681417 CGACTCTGCATGAGATTTGTGAA 59.319 43.478 16.81 0.00 45.39 3.18
953 997 1.139095 GCGTAAGTAGCTGTCGGCT 59.861 57.895 11.76 11.76 46.97 5.52
954 998 1.140407 GCGTAAGTAGCTGTCGGCTG 61.140 60.000 16.82 0.00 45.81 4.85
987 1031 1.989165 CAGAACAGAACAGTAGCGCTC 59.011 52.381 16.34 5.88 0.00 5.03
988 1032 1.613925 AGAACAGAACAGTAGCGCTCA 59.386 47.619 16.34 0.00 0.00 4.26
989 1033 1.721926 GAACAGAACAGTAGCGCTCAC 59.278 52.381 16.34 11.18 0.00 3.51
990 1034 0.673985 ACAGAACAGTAGCGCTCACA 59.326 50.000 16.34 0.00 0.00 3.58
991 1035 1.336332 ACAGAACAGTAGCGCTCACAG 60.336 52.381 16.34 10.38 0.00 3.66
992 1036 0.389166 AGAACAGTAGCGCTCACAGC 60.389 55.000 16.34 0.00 38.02 4.40
1005 1049 1.152567 CACAGCCACAGGGGGAAAA 60.153 57.895 0.00 0.00 37.04 2.29
1024 1068 3.577805 AATAAAACCCTATCAGCCGCT 57.422 42.857 0.00 0.00 0.00 5.52
1111 1155 1.992519 GAGGTGGAGCATGGCCTCAT 61.993 60.000 3.32 0.00 45.00 2.90
1490 1534 1.210155 GTTGCTTAGCTTGGTGCCG 59.790 57.895 5.60 0.00 44.23 5.69
1561 1607 4.407296 AGGCTACTAGAAGCATTGCTAAGT 59.593 41.667 12.39 16.77 44.64 2.24
1562 1608 5.598830 AGGCTACTAGAAGCATTGCTAAGTA 59.401 40.000 12.39 16.97 44.64 2.24
1563 1609 6.098409 AGGCTACTAGAAGCATTGCTAAGTAA 59.902 38.462 12.39 5.15 44.64 2.24
1564 1610 6.761714 GGCTACTAGAAGCATTGCTAAGTAAA 59.238 38.462 12.39 2.10 44.64 2.01
1565 1611 7.042389 GGCTACTAGAAGCATTGCTAAGTAAAG 60.042 40.741 12.39 11.42 44.64 1.85
1646 1692 9.738832 GTCTAATAATTCTAGTCAGTGAGGTTC 57.261 37.037 0.00 0.00 0.00 3.62
1670 1716 2.812664 GGCCAGGAATTTAGGGCTG 58.187 57.895 0.00 0.00 45.68 4.85
1691 1737 6.645003 GGCTGGGATGTTTTACTTTACTTTTG 59.355 38.462 0.00 0.00 0.00 2.44
1754 1800 4.663636 GTCTCCACGATTTTGTTGTAGG 57.336 45.455 0.00 0.00 0.00 3.18
1799 1846 4.389077 CGGCTAGAAACAGACAAGGTTAAG 59.611 45.833 0.00 0.00 0.00 1.85
1824 1871 1.093159 CCTGCAGAGTTGAGGATTGC 58.907 55.000 17.39 0.00 35.42 3.56
1825 1872 1.093159 CTGCAGAGTTGAGGATTGCC 58.907 55.000 8.42 0.00 33.98 4.52
1828 1875 0.036010 CAGAGTTGAGGATTGCCGGT 60.036 55.000 1.90 0.00 39.96 5.28
1835 1882 1.203001 TGAGGATTGCCGGTCCTTTTT 60.203 47.619 13.05 0.00 45.93 1.94
1836 1883 2.040545 TGAGGATTGCCGGTCCTTTTTA 59.959 45.455 13.05 0.00 45.93 1.52
1837 1884 2.683362 GAGGATTGCCGGTCCTTTTTAG 59.317 50.000 13.05 0.00 45.93 1.85
2049 2124 7.490079 CCTCATTGGATGTGATATTTGTTGTTG 59.510 37.037 0.00 0.00 38.35 3.33
2113 2188 0.814457 GTCGATCTCTGACTGGCTGT 59.186 55.000 0.00 0.00 33.54 4.40
2145 2220 3.687212 TCACCAACTATACAAATGCCACG 59.313 43.478 0.00 0.00 0.00 4.94
2267 2342 3.923461 GTGTTGCAGAGAAGCTACTACTG 59.077 47.826 0.00 0.00 40.21 2.74
2268 2343 3.574396 TGTTGCAGAGAAGCTACTACTGT 59.426 43.478 10.29 0.00 40.21 3.55
2269 2344 3.857549 TGCAGAGAAGCTACTACTGTG 57.142 47.619 10.29 7.20 34.99 3.66
2343 2418 1.345063 AAGCAAAGGAGCCAGCAAAT 58.655 45.000 0.00 0.00 34.23 2.32
2461 2536 2.418083 GGCAGCATGTTGGTAGGGC 61.418 63.158 11.80 0.00 39.31 5.19
2521 2596 6.527023 CGTCAGAGTGAATCGTAATGTTACTT 59.473 38.462 1.87 0.00 0.00 2.24
2523 2598 7.755822 GTCAGAGTGAATCGTAATGTTACTTCT 59.244 37.037 1.87 0.00 0.00 2.85
2595 2670 7.615582 TTTGTTTGTGCAAATTGAACCATTA 57.384 28.000 0.99 0.00 33.91 1.90
2690 2778 1.001406 GCCATAGCTCCACTCGCTATT 59.999 52.381 0.00 0.00 45.68 1.73
2700 2788 1.920574 CACTCGCTATTGTCGTTGGAG 59.079 52.381 0.00 0.00 0.00 3.86
2722 2810 1.962807 CTTCACTGGAATTTGTGCCCA 59.037 47.619 0.00 0.00 34.49 5.36
2975 3071 3.645212 TGGTTCAAAAGCCCATTCATTCA 59.355 39.130 0.00 0.00 0.00 2.57
2976 3072 4.248058 GGTTCAAAAGCCCATTCATTCAG 58.752 43.478 0.00 0.00 0.00 3.02
2977 3073 4.021192 GGTTCAAAAGCCCATTCATTCAGA 60.021 41.667 0.00 0.00 0.00 3.27
2978 3074 5.166398 GTTCAAAAGCCCATTCATTCAGAG 58.834 41.667 0.00 0.00 0.00 3.35
2979 3075 3.194116 TCAAAAGCCCATTCATTCAGAGC 59.806 43.478 0.00 0.00 0.00 4.09
2980 3076 1.772836 AAGCCCATTCATTCAGAGCC 58.227 50.000 0.00 0.00 0.00 4.70
2981 3077 0.465097 AGCCCATTCATTCAGAGCCG 60.465 55.000 0.00 0.00 0.00 5.52
2982 3078 0.464373 GCCCATTCATTCAGAGCCGA 60.464 55.000 0.00 0.00 0.00 5.54
2983 3079 1.303309 CCCATTCATTCAGAGCCGAC 58.697 55.000 0.00 0.00 0.00 4.79
2984 3080 1.407299 CCCATTCATTCAGAGCCGACA 60.407 52.381 0.00 0.00 0.00 4.35
2985 3081 1.667724 CCATTCATTCAGAGCCGACAC 59.332 52.381 0.00 0.00 0.00 3.67
2986 3082 2.349590 CATTCATTCAGAGCCGACACA 58.650 47.619 0.00 0.00 0.00 3.72
2987 3083 2.768253 TTCATTCAGAGCCGACACAT 57.232 45.000 0.00 0.00 0.00 3.21
2988 3084 2.014335 TCATTCAGAGCCGACACATG 57.986 50.000 0.00 0.00 0.00 3.21
2989 3085 1.012086 CATTCAGAGCCGACACATGG 58.988 55.000 0.00 0.00 0.00 3.66
3010 3121 7.171337 ACATGGACAACAATACAAGCATTTTTC 59.829 33.333 0.00 0.00 0.00 2.29
3021 3132 4.202503 ACAAGCATTTTTCTGGAGAGGAGA 60.203 41.667 0.00 0.00 0.00 3.71
3365 3476 2.097036 CAGGTTGTCCATGCATCACAT 58.903 47.619 8.50 0.00 40.66 3.21
3503 3614 0.107456 CTACCGAGCATGGGCAGATT 59.893 55.000 0.00 0.00 44.61 2.40
3728 3839 7.557719 CCCACTGAGTCTTTGGTTCATATAAAT 59.442 37.037 9.09 0.00 0.00 1.40
4208 4319 6.444704 TCCTAATCCTGGTTCTAGTTCATCT 58.555 40.000 0.00 0.00 0.00 2.90
4367 4478 1.122019 AGAACCACTCGGAGCAGGTT 61.122 55.000 26.21 26.21 46.39 3.50
4529 4640 1.478510 AGTATGTCCCTCTCTGCAACG 59.521 52.381 0.00 0.00 0.00 4.10
4781 4892 1.281656 GTAACTGTTGTGCCGCCAC 59.718 57.895 2.69 0.00 42.40 5.01
4986 5099 8.700439 AGCTTTCCTTTGGTTTAGTGTTAATA 57.300 30.769 0.00 0.00 0.00 0.98
5176 5289 3.408634 CTCCATTTCCGTGGTTTGTAGT 58.591 45.455 0.00 0.00 40.27 2.73
5215 5328 2.813179 CGCCTTATGTGTCGCCTGC 61.813 63.158 0.00 0.00 0.00 4.85
5218 5331 2.813179 CTTATGTGTCGCCTGCCGC 61.813 63.158 0.00 0.00 36.73 6.53
5384 5497 1.442769 ACTTGTGGATGCATCGTGTC 58.557 50.000 20.15 7.14 0.00 3.67
5566 5679 6.535150 TGGAAATCTTCGTGATTGTCTGATAC 59.465 38.462 7.06 0.00 43.99 2.24
5750 5863 3.823873 TGCCTTTATGTTTGTCGATGGTT 59.176 39.130 0.00 0.00 0.00 3.67
6039 6152 3.811722 TTGCTCACTGTAAGATTTGCG 57.188 42.857 0.00 0.00 37.43 4.85
6216 6329 5.182001 GCAGCAAAGAAGTTCAAAGGATCTA 59.818 40.000 5.50 0.00 0.00 1.98
6308 6421 0.323629 ATGGGTCCGTTGTGTCGATT 59.676 50.000 0.00 0.00 0.00 3.34
6363 6476 1.288633 TCCCTGATTGGATGCAACCAT 59.711 47.619 17.34 7.07 39.82 3.55
6494 6607 3.795101 GCTCACAAATCATAGCAATGCAC 59.205 43.478 8.35 0.00 35.05 4.57
6773 6886 1.345741 TCTTGAGCAGACAGGGACAAG 59.654 52.381 0.00 0.00 36.91 3.16
6958 7073 9.589461 TTTAACTCATTTAACAGGGGTTTGATA 57.411 29.630 0.00 0.00 38.45 2.15
6964 7079 9.793259 TCATTTAACAGGGGTTTGATATCTATC 57.207 33.333 3.98 0.00 38.45 2.08
6990 7105 9.674824 CTTATCATTTCTGATACATCCTTTTGC 57.325 33.333 0.00 0.00 42.66 3.68
7003 7118 1.541588 CCTTTTGCAGGGTGCTAAGAC 59.458 52.381 12.79 0.00 45.31 3.01
7004 7119 2.508526 CTTTTGCAGGGTGCTAAGACT 58.491 47.619 0.00 0.00 45.31 3.24
7005 7120 3.559171 CCTTTTGCAGGGTGCTAAGACTA 60.559 47.826 12.79 0.00 45.31 2.59
7006 7121 3.334583 TTTGCAGGGTGCTAAGACTAG 57.665 47.619 0.00 0.00 45.31 2.57
7007 7122 1.195115 TGCAGGGTGCTAAGACTAGG 58.805 55.000 0.00 0.00 45.31 3.02
7013 7128 2.104170 GGTGCTAAGACTAGGTCAGCT 58.896 52.381 10.01 0.00 34.60 4.24
7040 7155 1.865788 TTGCAAGGGACAAGCGATGC 61.866 55.000 0.00 0.00 33.14 3.91
7043 7158 1.377725 AAGGGACAAGCGATGCCAG 60.378 57.895 0.00 0.00 0.00 4.85
7075 7190 7.015877 ACGGCAGGTAATGATAAAATCTACCTA 59.984 37.037 7.27 0.00 34.98 3.08
7076 7191 8.041323 CGGCAGGTAATGATAAAATCTACCTAT 58.959 37.037 7.27 0.00 34.98 2.57
7077 7192 9.167311 GGCAGGTAATGATAAAATCTACCTATG 57.833 37.037 7.27 1.49 34.98 2.23
7146 7262 6.534634 CCTCGGTATATTCAAGGGAAGAAAT 58.465 40.000 0.00 0.00 36.25 2.17
7206 7520 2.479560 GGTTTTCTCGCATGTATTGGGC 60.480 50.000 0.00 0.00 38.14 5.36
7224 7538 3.446873 TGGGCAGCAGTAATATGTTTTGG 59.553 43.478 0.00 0.00 0.00 3.28
7225 7539 3.447229 GGGCAGCAGTAATATGTTTTGGT 59.553 43.478 0.00 0.00 0.00 3.67
7229 7543 7.264947 GGCAGCAGTAATATGTTTTGGTTTAT 58.735 34.615 0.00 0.00 0.00 1.40
7253 7570 4.899352 ATGTAGAAGAAACTGAGGTGCT 57.101 40.909 0.00 0.00 0.00 4.40
7271 7588 3.246226 GTGCTCAATCTAATGCTACCGTG 59.754 47.826 0.00 0.00 0.00 4.94
7272 7589 2.802816 GCTCAATCTAATGCTACCGTGG 59.197 50.000 0.00 0.00 0.00 4.94
7281 7598 6.103997 TCTAATGCTACCGTGGTCTTTTTAG 58.896 40.000 0.00 0.79 0.00 1.85
7294 7611 4.556233 GTCTTTTTAGGTTGATTGGTGGC 58.444 43.478 0.00 0.00 0.00 5.01
7307 7624 1.357137 TGGTGGCTGGTGATCTGTAA 58.643 50.000 0.00 0.00 0.00 2.41
7312 7691 5.133221 GGTGGCTGGTGATCTGTAATAATT 58.867 41.667 0.00 0.00 0.00 1.40
7313 7692 6.126623 TGGTGGCTGGTGATCTGTAATAATTA 60.127 38.462 0.00 0.00 0.00 1.40
7385 7766 6.516527 GCAACCTTTTAGACCATGTGAATTCA 60.517 38.462 3.38 3.38 0.00 2.57
7386 7767 7.605449 CAACCTTTTAGACCATGTGAATTCAT 58.395 34.615 12.12 0.00 0.00 2.57
7408 7789 8.506168 TCATATATTGAAACTGTCCAAAGTCC 57.494 34.615 0.80 0.00 0.00 3.85
7409 7790 8.106462 TCATATATTGAAACTGTCCAAAGTCCA 58.894 33.333 0.80 0.00 0.00 4.02
7410 7791 8.739039 CATATATTGAAACTGTCCAAAGTCCAA 58.261 33.333 0.80 0.00 0.00 3.53
7411 7792 5.930837 ATTGAAACTGTCCAAAGTCCAAA 57.069 34.783 0.80 0.00 0.00 3.28
7438 7822 3.624861 CCACTGAACTATTCACCAGATGC 59.375 47.826 0.00 0.00 35.46 3.91
7439 7823 4.256110 CACTGAACTATTCACCAGATGCA 58.744 43.478 0.00 0.00 35.46 3.96
7440 7824 4.880120 CACTGAACTATTCACCAGATGCAT 59.120 41.667 0.00 0.00 35.46 3.96
7441 7825 4.880120 ACTGAACTATTCACCAGATGCATG 59.120 41.667 2.46 0.00 35.46 4.06
7442 7826 3.628942 TGAACTATTCACCAGATGCATGC 59.371 43.478 11.82 11.82 34.08 4.06
7443 7827 3.286329 ACTATTCACCAGATGCATGCA 57.714 42.857 25.04 25.04 0.00 3.96
7444 7828 3.211865 ACTATTCACCAGATGCATGCAG 58.788 45.455 26.69 14.64 0.00 4.41
7445 7829 0.744874 ATTCACCAGATGCATGCAGC 59.255 50.000 27.98 27.98 45.96 5.25
7592 7980 1.187974 CTCTGAATTTGCCCATGCCA 58.812 50.000 0.00 0.00 36.33 4.92
7593 7981 0.896923 TCTGAATTTGCCCATGCCAC 59.103 50.000 0.00 0.00 36.33 5.01
7648 8046 1.002792 GAGCAAACTGACACGGTTTCC 60.003 52.381 5.83 0.00 40.45 3.13
7650 8048 1.675552 CAAACTGACACGGTTTCCCT 58.324 50.000 5.83 0.00 40.45 4.20
7803 8203 2.184830 TCTATCGGAGGACGGTGCG 61.185 63.158 0.00 0.00 44.45 5.34
7820 8220 2.456119 CGTCTGCACGGGAGCAATC 61.456 63.158 0.00 0.00 45.13 2.67
7821 8221 1.375908 GTCTGCACGGGAGCAATCA 60.376 57.895 0.00 0.00 45.13 2.57
7822 8222 0.955428 GTCTGCACGGGAGCAATCAA 60.955 55.000 0.00 0.00 45.13 2.57
7823 8223 0.035152 TCTGCACGGGAGCAATCAAT 60.035 50.000 0.00 0.00 45.13 2.57
7881 8281 0.322546 GCGAATCCCTTTGACCCAGT 60.323 55.000 0.00 0.00 0.00 4.00
7913 8313 4.549599 GTGCATATGTTTTCAAAGTCGTCG 59.450 41.667 4.29 0.00 0.00 5.12
8094 8508 2.917227 TGACGCCTGTCTGCCTGA 60.917 61.111 0.00 0.00 45.70 3.86
8141 8580 3.411351 CGTGTCGCCGGTCTTTGG 61.411 66.667 1.90 0.00 0.00 3.28
8143 8582 2.029964 TGTCGCCGGTCTTTGGAC 59.970 61.111 1.90 2.28 41.43 4.02
8177 8616 3.768632 CTGTAGTTCGTCAGCCGC 58.231 61.111 0.00 0.00 36.19 6.53
8182 8621 1.005294 TAGTTCGTCAGCCGCGTTTC 61.005 55.000 4.92 0.00 36.19 2.78
8191 8630 3.554324 GTCAGCCGCGTTTCAATAAGATA 59.446 43.478 4.92 0.00 0.00 1.98
8247 10351 3.740631 TCGTCTCATCATCCAATCCAG 57.259 47.619 0.00 0.00 0.00 3.86
8249 10353 4.215109 TCGTCTCATCATCCAATCCAGTA 58.785 43.478 0.00 0.00 0.00 2.74
8280 10384 1.741770 AAATCACCGGCAGCGAGAC 60.742 57.895 0.00 0.00 0.00 3.36
8296 10402 1.135333 GAGACGGAGAAGTCCATCCAC 59.865 57.143 0.00 0.00 44.18 4.02
8310 10416 5.835280 AGTCCATCCACCCATATTCAAAATC 59.165 40.000 0.00 0.00 0.00 2.17
8323 10429 3.915437 TCAAAATCTTGAACTTCCGCC 57.085 42.857 0.00 0.00 38.65 6.13
8333 10439 4.468689 CTTCCGCCCTCCGTTCCC 62.469 72.222 0.00 0.00 34.38 3.97
8344 10450 4.659172 CGTTCCCAAGCCCTGGCA 62.659 66.667 11.38 0.00 44.90 4.92
8357 10467 3.746949 CTGGCATCTCGCACCTCCC 62.747 68.421 0.00 0.00 45.17 4.30
8359 10469 2.268920 GCATCTCGCACCTCCCAA 59.731 61.111 0.00 0.00 41.79 4.12
8360 10470 2.109126 GCATCTCGCACCTCCCAAC 61.109 63.158 0.00 0.00 41.79 3.77
8361 10471 1.599047 CATCTCGCACCTCCCAACT 59.401 57.895 0.00 0.00 0.00 3.16
8364 10474 1.216710 CTCGCACCTCCCAACTCTC 59.783 63.158 0.00 0.00 0.00 3.20
8365 10475 2.125912 CGCACCTCCCAACTCTCG 60.126 66.667 0.00 0.00 0.00 4.04
8367 10477 1.901085 GCACCTCCCAACTCTCGAT 59.099 57.895 0.00 0.00 0.00 3.59
8368 10478 1.112113 GCACCTCCCAACTCTCGATA 58.888 55.000 0.00 0.00 0.00 2.92
8387 10504 4.036498 CGATACTACGAGACCAACCAGAAT 59.964 45.833 0.00 0.00 35.09 2.40
8388 10505 5.450137 CGATACTACGAGACCAACCAGAATT 60.450 44.000 0.00 0.00 35.09 2.17
8389 10506 4.189639 ACTACGAGACCAACCAGAATTC 57.810 45.455 0.00 0.00 0.00 2.17
8390 10507 2.080286 ACGAGACCAACCAGAATTCG 57.920 50.000 0.00 0.00 0.00 3.34
8391 10508 1.616865 ACGAGACCAACCAGAATTCGA 59.383 47.619 0.00 0.00 0.00 3.71
8392 10509 2.263077 CGAGACCAACCAGAATTCGAG 58.737 52.381 0.00 0.00 0.00 4.04
8393 10510 2.003301 GAGACCAACCAGAATTCGAGC 58.997 52.381 0.00 0.00 0.00 5.03
8394 10511 0.721718 GACCAACCAGAATTCGAGCG 59.278 55.000 0.00 0.00 0.00 5.03
8395 10512 1.298859 ACCAACCAGAATTCGAGCGC 61.299 55.000 0.00 0.00 0.00 5.92
8396 10513 1.021390 CCAACCAGAATTCGAGCGCT 61.021 55.000 11.27 11.27 0.00 5.92
8397 10514 1.640428 CAACCAGAATTCGAGCGCTA 58.360 50.000 11.50 0.00 0.00 4.26
8444 10561 3.207669 GCAGCCCGAGCCAATCAG 61.208 66.667 0.00 0.00 41.25 2.90
8676 10807 1.183030 CCGATCCACGCCCCACTATA 61.183 60.000 0.00 0.00 41.07 1.31
8677 10808 0.895530 CGATCCACGCCCCACTATAT 59.104 55.000 0.00 0.00 34.51 0.86
8678 10809 1.275291 CGATCCACGCCCCACTATATT 59.725 52.381 0.00 0.00 34.51 1.28
8683 10814 5.313280 TCCACGCCCCACTATATTAAATT 57.687 39.130 0.00 0.00 0.00 1.82
8684 10815 5.697067 TCCACGCCCCACTATATTAAATTT 58.303 37.500 0.00 0.00 0.00 1.82
8711 10842 1.072173 CAAGTGCGGATATCCCATCCA 59.928 52.381 16.36 5.67 38.08 3.41
8950 11092 3.969802 GACACGGACACGGACGGT 61.970 66.667 0.00 0.00 46.48 4.83
8958 11100 3.326109 CACGGACGGTGTGGAAAC 58.674 61.111 5.04 0.00 41.89 2.78
8959 11101 1.227438 CACGGACGGTGTGGAAACT 60.227 57.895 5.04 0.00 41.89 2.66
8960 11102 0.812412 CACGGACGGTGTGGAAACTT 60.812 55.000 5.04 0.00 41.89 2.66
8961 11103 0.812412 ACGGACGGTGTGGAAACTTG 60.812 55.000 0.00 0.00 0.00 3.16
8962 11104 1.503818 CGGACGGTGTGGAAACTTGG 61.504 60.000 0.00 0.00 0.00 3.61
8963 11105 0.464916 GGACGGTGTGGAAACTTGGT 60.465 55.000 0.00 0.00 0.00 3.67
8998 11141 3.319198 GCGGTGGGACTTCTGGGA 61.319 66.667 0.00 0.00 0.00 4.37
8999 11142 2.670148 GCGGTGGGACTTCTGGGAT 61.670 63.158 0.00 0.00 0.00 3.85
9000 11143 1.522569 CGGTGGGACTTCTGGGATC 59.477 63.158 0.00 0.00 0.00 3.36
9001 11144 0.978146 CGGTGGGACTTCTGGGATCT 60.978 60.000 0.00 0.00 0.00 2.75
9002 11145 0.543749 GGTGGGACTTCTGGGATCTG 59.456 60.000 0.00 0.00 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 4.530857 CTGAACGGGGGCTAGGCG 62.531 72.222 10.58 0.00 0.00 5.52
29 30 1.466167 CTTGAAGCATCACCTGAACGG 59.534 52.381 0.00 0.00 34.61 4.44
30 31 1.135859 GCTTGAAGCATCACCTGAACG 60.136 52.381 13.09 0.00 41.89 3.95
55 56 2.046892 CCTCCACACGCCCTCAAG 60.047 66.667 0.00 0.00 0.00 3.02
73 74 0.366871 CAAGATTCGCCGAAGACACG 59.633 55.000 5.52 0.00 0.00 4.49
76 77 1.126846 CACACAAGATTCGCCGAAGAC 59.873 52.381 5.52 2.20 0.00 3.01
80 81 1.999735 GAATCACACAAGATTCGCCGA 59.000 47.619 0.00 0.00 42.96 5.54
86 87 2.346803 CCGACCGAATCACACAAGATT 58.653 47.619 0.00 0.00 40.75 2.40
91 92 2.431771 CGCCGACCGAATCACACA 60.432 61.111 0.00 0.00 40.02 3.72
95 96 1.286354 GACAAACGCCGACCGAATCA 61.286 55.000 0.00 0.00 41.02 2.57
101 102 0.883370 AAAGAGGACAAACGCCGACC 60.883 55.000 0.00 0.00 0.00 4.79
115 116 2.216898 GATTCAGGCGGATCCAAAGAG 58.783 52.381 13.41 0.00 37.29 2.85
117 118 1.312815 GGATTCAGGCGGATCCAAAG 58.687 55.000 13.41 0.00 37.29 2.77
119 120 1.146041 CGGATTCAGGCGGATCCAA 59.854 57.895 13.41 0.00 37.29 3.53
128 129 2.205074 CGAATGAAGACCGGATTCAGG 58.795 52.381 24.05 15.48 39.86 3.86
129 130 1.594862 GCGAATGAAGACCGGATTCAG 59.405 52.381 24.05 15.53 39.86 3.02
130 131 1.207089 AGCGAATGAAGACCGGATTCA 59.793 47.619 22.80 22.80 40.72 2.57
131 132 1.941325 AGCGAATGAAGACCGGATTC 58.059 50.000 9.46 12.95 0.00 2.52
132 133 2.403252 AAGCGAATGAAGACCGGATT 57.597 45.000 9.46 1.40 0.00 3.01
133 134 2.798499 CGTAAGCGAATGAAGACCGGAT 60.798 50.000 9.46 0.00 41.33 4.18
134 135 1.468565 CGTAAGCGAATGAAGACCGGA 60.469 52.381 9.46 0.00 41.33 5.14
135 136 0.921347 CGTAAGCGAATGAAGACCGG 59.079 55.000 0.00 0.00 41.33 5.28
136 137 1.582502 GACGTAAGCGAATGAAGACCG 59.417 52.381 0.00 0.00 45.62 4.79
137 138 2.599082 CAGACGTAAGCGAATGAAGACC 59.401 50.000 0.00 0.00 45.62 3.85
138 139 3.059570 CACAGACGTAAGCGAATGAAGAC 59.940 47.826 0.00 0.00 45.62 3.01
139 140 3.242518 CACAGACGTAAGCGAATGAAGA 58.757 45.455 0.00 0.00 45.62 2.87
140 141 2.987149 ACACAGACGTAAGCGAATGAAG 59.013 45.455 0.00 0.00 45.62 3.02
141 142 2.729360 CACACAGACGTAAGCGAATGAA 59.271 45.455 0.00 0.00 45.62 2.57
142 143 2.287970 ACACACAGACGTAAGCGAATGA 60.288 45.455 0.00 0.00 45.62 2.57
143 144 2.058798 ACACACAGACGTAAGCGAATG 58.941 47.619 0.00 0.00 45.62 2.67
144 145 2.030185 AGACACACAGACGTAAGCGAAT 60.030 45.455 0.00 0.00 45.62 3.34
153 154 1.373497 GCCTCCAGACACACAGACG 60.373 63.158 0.00 0.00 0.00 4.18
164 165 0.179062 CGGAAGAATCCAGCCTCCAG 60.179 60.000 0.00 0.00 46.97 3.86
167 168 1.691434 AGATCGGAAGAATCCAGCCTC 59.309 52.381 0.00 0.00 46.97 4.70
171 172 7.393234 AGAGAAGTATAGATCGGAAGAATCCAG 59.607 40.741 0.00 0.00 46.97 3.86
182 183 6.089685 TCGTCGATGAAGAGAAGTATAGATCG 59.910 42.308 4.45 0.00 34.25 3.69
186 187 5.367563 CGTCGTCGATGAAGAGAAGTATAG 58.632 45.833 14.50 0.00 39.71 1.31
190 191 1.130749 CCGTCGTCGATGAAGAGAAGT 59.869 52.381 20.29 0.00 39.71 3.01
204 205 0.386476 TGCACTAGAACAACCGTCGT 59.614 50.000 0.00 0.00 0.00 4.34
209 210 2.143925 GACCAGTGCACTAGAACAACC 58.856 52.381 21.20 0.00 0.00 3.77
237 241 5.476614 GTCAGGAAGTTGTCGTAATAAGGT 58.523 41.667 0.00 0.00 0.00 3.50
249 253 3.504906 TGTAGTAGACGGTCAGGAAGTTG 59.495 47.826 11.27 0.00 0.00 3.16
250 254 3.759581 TGTAGTAGACGGTCAGGAAGTT 58.240 45.455 11.27 0.00 0.00 2.66
257 261 4.859304 ATGTTGTTGTAGTAGACGGTCA 57.141 40.909 11.27 0.00 0.00 4.02
265 269 3.499157 GTCGGGCAAATGTTGTTGTAGTA 59.501 43.478 0.00 0.00 0.00 1.82
276 280 0.389817 TCGTCAGAGTCGGGCAAATG 60.390 55.000 0.00 0.00 0.00 2.32
277 281 0.108615 CTCGTCAGAGTCGGGCAAAT 60.109 55.000 0.00 0.00 39.60 2.32
286 290 1.379309 GCCCCTCTCTCGTCAGAGT 60.379 63.158 11.01 0.00 45.92 3.24
290 294 2.121538 CATCGCCCCTCTCTCGTCA 61.122 63.158 0.00 0.00 0.00 4.35
318 322 1.576356 CACTAGAGGAAGCCGAATGC 58.424 55.000 0.00 0.00 41.71 3.56
329 334 1.472376 GGCAGCTACAAGCACTAGAGG 60.472 57.143 0.00 0.00 45.56 3.69
333 338 1.447838 GCGGCAGCTACAAGCACTA 60.448 57.895 0.00 0.00 45.56 2.74
348 353 0.318784 GTTCGTAGGCCATCTAGCGG 60.319 60.000 5.01 0.00 0.00 5.52
358 363 5.941948 AATTTATATGCAGGTTCGTAGGC 57.058 39.130 0.00 0.00 0.00 3.93
359 364 9.052759 AGTAAAATTTATATGCAGGTTCGTAGG 57.947 33.333 0.00 0.00 0.00 3.18
462 469 7.076842 AGAGCATGTCAATTTATGTGTGTAC 57.923 36.000 0.00 0.00 0.00 2.90
497 531 6.472163 GTCCTCAAAATTACATACAAATGGCG 59.528 38.462 0.00 0.00 37.43 5.69
503 537 4.944930 CCCCGTCCTCAAAATTACATACAA 59.055 41.667 0.00 0.00 0.00 2.41
508 542 1.706305 ACCCCCGTCCTCAAAATTACA 59.294 47.619 0.00 0.00 0.00 2.41
512 546 1.382629 CCACCCCCGTCCTCAAAAT 59.617 57.895 0.00 0.00 0.00 1.82
534 568 4.995058 TCCTCCACCCCACCACCC 62.995 72.222 0.00 0.00 0.00 4.61
535 569 3.330720 CTCCTCCACCCCACCACC 61.331 72.222 0.00 0.00 0.00 4.61
536 570 2.203938 TCTCCTCCACCCCACCAC 60.204 66.667 0.00 0.00 0.00 4.16
537 571 1.448814 TACTCTCCTCCACCCCACCA 61.449 60.000 0.00 0.00 0.00 4.17
538 572 0.252558 TTACTCTCCTCCACCCCACC 60.253 60.000 0.00 0.00 0.00 4.61
539 573 1.652947 TTTACTCTCCTCCACCCCAC 58.347 55.000 0.00 0.00 0.00 4.61
540 574 2.266279 CTTTTACTCTCCTCCACCCCA 58.734 52.381 0.00 0.00 0.00 4.96
541 575 1.560146 CCTTTTACTCTCCTCCACCCC 59.440 57.143 0.00 0.00 0.00 4.95
542 576 2.547990 TCCTTTTACTCTCCTCCACCC 58.452 52.381 0.00 0.00 0.00 4.61
543 577 5.661759 TCTTATCCTTTTACTCTCCTCCACC 59.338 44.000 0.00 0.00 0.00 4.61
544 578 6.575267 GTCTTATCCTTTTACTCTCCTCCAC 58.425 44.000 0.00 0.00 0.00 4.02
545 579 5.360144 CGTCTTATCCTTTTACTCTCCTCCA 59.640 44.000 0.00 0.00 0.00 3.86
551 585 3.737355 GCCGCGTCTTATCCTTTTACTCT 60.737 47.826 4.92 0.00 0.00 3.24
559 593 2.058595 ACAGGCCGCGTCTTATCCT 61.059 57.895 4.92 0.00 0.00 3.24
572 606 1.388547 TGTGAGGAAACAACACAGGC 58.611 50.000 0.00 0.00 42.03 4.85
574 608 3.374745 GCAATGTGAGGAAACAACACAG 58.625 45.455 0.00 0.00 46.72 3.66
584 618 3.084039 GTTCTTCATGGCAATGTGAGGA 58.916 45.455 0.00 0.00 35.15 3.71
590 624 2.095768 ACGTTCGTTCTTCATGGCAATG 60.096 45.455 0.00 0.00 34.88 2.82
614 648 3.978804 GCAACCCTTTGAGTGAACAACAC 60.979 47.826 0.00 0.00 40.15 3.32
615 649 2.165437 GCAACCCTTTGAGTGAACAACA 59.835 45.455 0.00 0.00 34.24 3.33
616 650 2.165437 TGCAACCCTTTGAGTGAACAAC 59.835 45.455 0.00 0.00 34.24 3.32
617 651 2.451490 TGCAACCCTTTGAGTGAACAA 58.549 42.857 0.00 0.00 34.24 2.83
618 652 2.136298 TGCAACCCTTTGAGTGAACA 57.864 45.000 0.00 0.00 34.24 3.18
619 653 3.383761 CAATGCAACCCTTTGAGTGAAC 58.616 45.455 0.00 0.00 34.24 3.18
620 654 2.364970 CCAATGCAACCCTTTGAGTGAA 59.635 45.455 0.00 0.00 34.24 3.18
621 655 1.962807 CCAATGCAACCCTTTGAGTGA 59.037 47.619 0.00 0.00 34.24 3.41
622 656 1.962807 TCCAATGCAACCCTTTGAGTG 59.037 47.619 0.00 0.00 34.24 3.51
623 657 2.242043 CTCCAATGCAACCCTTTGAGT 58.758 47.619 0.00 0.00 34.24 3.41
624 658 1.067354 GCTCCAATGCAACCCTTTGAG 60.067 52.381 0.00 0.00 34.24 3.02
625 659 0.968405 GCTCCAATGCAACCCTTTGA 59.032 50.000 0.00 0.00 34.24 2.69
626 660 0.388907 CGCTCCAATGCAACCCTTTG 60.389 55.000 0.00 0.00 35.62 2.77
627 661 0.539438 TCGCTCCAATGCAACCCTTT 60.539 50.000 0.00 0.00 0.00 3.11
628 662 0.539438 TTCGCTCCAATGCAACCCTT 60.539 50.000 0.00 0.00 0.00 3.95
629 663 1.074775 TTCGCTCCAATGCAACCCT 59.925 52.632 0.00 0.00 0.00 4.34
630 664 1.212751 GTTCGCTCCAATGCAACCC 59.787 57.895 0.00 0.00 0.00 4.11
631 665 1.154225 CGTTCGCTCCAATGCAACC 60.154 57.895 0.00 0.00 0.00 3.77
632 666 1.797537 GCGTTCGCTCCAATGCAAC 60.798 57.895 9.99 0.00 38.07 4.17
633 667 2.560861 GCGTTCGCTCCAATGCAA 59.439 55.556 9.99 0.00 38.07 4.08
634 668 3.430862 GGCGTTCGCTCCAATGCA 61.431 61.111 16.40 0.00 39.66 3.96
635 669 2.470801 TTTGGCGTTCGCTCCAATGC 62.471 55.000 16.40 0.00 41.12 3.56
636 670 0.729140 GTTTGGCGTTCGCTCCAATG 60.729 55.000 16.40 0.00 41.12 2.82
637 671 1.579429 GTTTGGCGTTCGCTCCAAT 59.421 52.632 16.40 0.00 41.12 3.16
638 672 2.887889 CGTTTGGCGTTCGCTCCAA 61.888 57.895 16.40 10.31 39.93 3.53
639 673 3.342627 CGTTTGGCGTTCGCTCCA 61.343 61.111 16.40 4.75 35.54 3.86
640 674 4.084888 CCGTTTGGCGTTCGCTCC 62.085 66.667 16.40 2.13 39.32 4.70
650 684 1.905843 TCATGGGGTTGCCGTTTGG 60.906 57.895 0.00 0.00 38.77 3.28
651 685 1.288752 GTCATGGGGTTGCCGTTTG 59.711 57.895 0.00 0.00 0.00 2.93
652 686 1.906333 GGTCATGGGGTTGCCGTTT 60.906 57.895 0.00 0.00 0.00 3.60
653 687 2.282887 GGTCATGGGGTTGCCGTT 60.283 61.111 0.00 0.00 0.00 4.44
654 688 2.439553 AATGGTCATGGGGTTGCCGT 62.440 55.000 0.00 0.00 0.00 5.68
655 689 1.682005 AATGGTCATGGGGTTGCCG 60.682 57.895 0.00 0.00 0.00 5.69
656 690 0.904394 ACAATGGTCATGGGGTTGCC 60.904 55.000 0.00 0.00 0.00 4.52
657 691 0.532115 GACAATGGTCATGGGGTTGC 59.468 55.000 0.00 0.00 43.73 4.17
681 715 3.249799 TGATGTGTTTGACCGTGAATGAC 59.750 43.478 0.00 0.00 0.00 3.06
688 722 2.613026 TCTGTGATGTGTTTGACCGT 57.387 45.000 0.00 0.00 0.00 4.83
691 725 5.106948 ACGAATGATCTGTGATGTGTTTGAC 60.107 40.000 0.00 0.00 0.00 3.18
709 749 5.953183 TGGGAATGATTTTCTGAACGAATG 58.047 37.500 0.00 0.00 0.00 2.67
724 764 1.083489 GCGATCGTTGTTGGGAATGA 58.917 50.000 17.81 0.00 0.00 2.57
732 772 6.146184 CCAATTATCATAGAGCGATCGTTGTT 59.854 38.462 17.81 3.93 0.00 2.83
734 774 5.445142 GCCAATTATCATAGAGCGATCGTTG 60.445 44.000 17.81 8.19 0.00 4.10
739 782 6.488006 AGTTTTGCCAATTATCATAGAGCGAT 59.512 34.615 0.00 0.00 0.00 4.58
749 792 7.115663 TCGCAACTTTTAGTTTTGCCAATTATC 59.884 33.333 0.00 0.00 42.20 1.75
751 794 6.273825 TCGCAACTTTTAGTTTTGCCAATTA 58.726 32.000 0.00 0.00 42.20 1.40
753 796 4.688021 TCGCAACTTTTAGTTTTGCCAAT 58.312 34.783 0.00 0.00 42.20 3.16
757 800 6.031549 ACATTTCGCAACTTTTAGTTTTGC 57.968 33.333 0.00 0.00 36.03 3.68
763 806 3.833061 CGTCGACATTTCGCAACTTTTAG 59.167 43.478 17.16 0.00 45.46 1.85
764 807 3.490155 TCGTCGACATTTCGCAACTTTTA 59.510 39.130 17.16 0.00 45.46 1.52
781 824 2.200792 AATCTCATGCAGAGTCGTCG 57.799 50.000 11.37 0.00 44.98 5.12
806 849 6.262049 GTGCCTGGTTGGTTATCAAAATTTTT 59.738 34.615 0.00 0.00 37.08 1.94
811 854 3.571590 AGTGCCTGGTTGGTTATCAAAA 58.428 40.909 0.00 0.00 37.08 2.44
812 855 3.237268 AGTGCCTGGTTGGTTATCAAA 57.763 42.857 0.00 0.00 37.08 2.69
826 869 3.221771 TGTCAAATGTTTGCTAGTGCCT 58.778 40.909 0.66 0.00 38.05 4.75
828 871 5.463061 ACAAATGTCAAATGTTTGCTAGTGC 59.537 36.000 0.66 0.00 38.05 4.40
953 997 3.327464 TCTGTTCTGTGTGGGATGATTCA 59.673 43.478 0.00 0.00 0.00 2.57
954 998 3.942829 TCTGTTCTGTGTGGGATGATTC 58.057 45.455 0.00 0.00 0.00 2.52
987 1031 0.542702 ATTTTCCCCCTGTGGCTGTG 60.543 55.000 0.00 0.00 0.00 3.66
988 1032 1.080638 TATTTTCCCCCTGTGGCTGT 58.919 50.000 0.00 0.00 0.00 4.40
989 1033 2.230130 TTATTTTCCCCCTGTGGCTG 57.770 50.000 0.00 0.00 0.00 4.85
990 1034 2.903784 GTTTTATTTTCCCCCTGTGGCT 59.096 45.455 0.00 0.00 0.00 4.75
991 1035 2.027561 GGTTTTATTTTCCCCCTGTGGC 60.028 50.000 0.00 0.00 0.00 5.01
992 1036 2.569853 GGGTTTTATTTTCCCCCTGTGG 59.430 50.000 0.00 0.00 35.52 4.17
1005 1049 2.851195 CAGCGGCTGATAGGGTTTTAT 58.149 47.619 25.33 0.00 32.44 1.40
1245 1289 4.702081 GCACGTGACTCGAGCGGT 62.702 66.667 22.23 2.19 44.64 5.68
1484 1528 4.279043 GCAACAACCACCGGCACC 62.279 66.667 0.00 0.00 0.00 5.01
1490 1534 0.168128 GCATCGTAGCAACAACCACC 59.832 55.000 0.00 0.00 0.00 4.61
1561 1607 6.203915 ACGACACAAGCATTACACATTCTTTA 59.796 34.615 0.00 0.00 0.00 1.85
1562 1608 5.008613 ACGACACAAGCATTACACATTCTTT 59.991 36.000 0.00 0.00 0.00 2.52
1563 1609 4.515191 ACGACACAAGCATTACACATTCTT 59.485 37.500 0.00 0.00 0.00 2.52
1564 1610 4.065088 ACGACACAAGCATTACACATTCT 58.935 39.130 0.00 0.00 0.00 2.40
1565 1611 4.394795 GACGACACAAGCATTACACATTC 58.605 43.478 0.00 0.00 0.00 2.67
1619 1665 9.482175 AACCTCACTGACTAGAATTATTAGACT 57.518 33.333 0.00 0.00 0.00 3.24
1646 1692 2.961062 CCCTAAATTCCTGGCCTGATTG 59.039 50.000 11.88 0.00 0.00 2.67
1727 1773 0.249398 AAAATCGTGGAGACGGGGAG 59.751 55.000 0.00 0.00 46.11 4.30
1754 1800 5.142962 CGAACAAGAGAAAAATGCAGACTC 58.857 41.667 0.00 0.00 0.00 3.36
1799 1846 1.205893 CCTCAACTCTGCAGGTAGTCC 59.794 57.143 15.13 0.00 0.00 3.85
1824 1871 7.562454 TGCTTATTATTCTAAAAAGGACCGG 57.438 36.000 0.00 0.00 0.00 5.28
1825 1872 8.674607 ACTTGCTTATTATTCTAAAAAGGACCG 58.325 33.333 0.00 0.00 0.00 4.79
1835 1882 8.780846 TTTCACCGAACTTGCTTATTATTCTA 57.219 30.769 0.00 0.00 0.00 2.10
1836 1883 7.681939 TTTCACCGAACTTGCTTATTATTCT 57.318 32.000 0.00 0.00 0.00 2.40
1837 1884 8.911247 ATTTTCACCGAACTTGCTTATTATTC 57.089 30.769 0.00 0.00 0.00 1.75
1853 1921 8.764287 AGCTTTTTCTTTGATTAATTTTCACCG 58.236 29.630 0.00 0.00 0.00 4.94
2043 2118 1.266718 TGGAATGAAGAGCGCAACAAC 59.733 47.619 11.47 2.40 0.00 3.32
2068 2143 3.394606 ACCATCCGGCTCCTAAATATTGT 59.605 43.478 0.00 0.00 34.57 2.71
2113 2188 6.921486 TGTATAGTTGGTGAGTTAGTTCCA 57.079 37.500 0.00 0.00 0.00 3.53
2249 2324 2.493675 CCACAGTAGTAGCTTCTCTGCA 59.506 50.000 14.96 0.00 34.99 4.41
2267 2342 0.530288 ACAAGTTGTTGTGCCACCAC 59.470 50.000 1.64 0.00 45.58 4.16
2268 2343 1.746220 GTACAAGTTGTTGTGCCACCA 59.254 47.619 14.90 0.00 46.75 4.17
2269 2344 2.485266 GTACAAGTTGTTGTGCCACC 57.515 50.000 14.90 0.00 46.75 4.61
2343 2418 4.114015 TGGTCCTCTGAACTAAGTCTGA 57.886 45.455 0.00 0.00 0.00 3.27
2461 2536 0.625849 ACTTGGCACTGGAATAGGGG 59.374 55.000 0.00 0.00 0.00 4.79
2521 2596 3.650942 ACACCTTTTCCATGGTCAGTAGA 59.349 43.478 12.58 0.00 33.75 2.59
2523 2598 4.104102 AGAACACCTTTTCCATGGTCAGTA 59.896 41.667 12.58 0.00 32.20 2.74
2639 2715 6.808704 GGAGCTGATAAACAATTTTCTGTTCC 59.191 38.462 0.00 6.24 38.59 3.62
2686 2774 2.673368 GTGAAGCCTCCAACGACAATAG 59.327 50.000 0.00 0.00 0.00 1.73
2690 2778 0.249868 CAGTGAAGCCTCCAACGACA 60.250 55.000 0.00 0.00 0.00 4.35
2700 2788 1.337167 GGCACAAATTCCAGTGAAGCC 60.337 52.381 9.13 5.47 37.97 4.35
2975 3071 0.320771 GTTGTCCATGTGTCGGCTCT 60.321 55.000 0.00 0.00 0.00 4.09
2976 3072 0.602638 TGTTGTCCATGTGTCGGCTC 60.603 55.000 0.00 0.00 0.00 4.70
2977 3073 0.179032 TTGTTGTCCATGTGTCGGCT 60.179 50.000 0.00 0.00 0.00 5.52
2978 3074 0.881118 ATTGTTGTCCATGTGTCGGC 59.119 50.000 0.00 0.00 0.00 5.54
2979 3075 3.070748 TGTATTGTTGTCCATGTGTCGG 58.929 45.455 0.00 0.00 0.00 4.79
2980 3076 4.711721 CTTGTATTGTTGTCCATGTGTCG 58.288 43.478 0.00 0.00 0.00 4.35
2981 3077 4.023279 TGCTTGTATTGTTGTCCATGTGTC 60.023 41.667 0.00 0.00 0.00 3.67
2982 3078 3.888323 TGCTTGTATTGTTGTCCATGTGT 59.112 39.130 0.00 0.00 0.00 3.72
2983 3079 4.502171 TGCTTGTATTGTTGTCCATGTG 57.498 40.909 0.00 0.00 0.00 3.21
2984 3080 5.726980 AATGCTTGTATTGTTGTCCATGT 57.273 34.783 0.00 0.00 0.00 3.21
2985 3081 7.385752 AGAAAAATGCTTGTATTGTTGTCCATG 59.614 33.333 0.00 0.00 0.00 3.66
2986 3082 7.385752 CAGAAAAATGCTTGTATTGTTGTCCAT 59.614 33.333 0.00 0.00 0.00 3.41
2987 3083 6.700960 CAGAAAAATGCTTGTATTGTTGTCCA 59.299 34.615 0.00 0.00 0.00 4.02
2988 3084 6.146021 CCAGAAAAATGCTTGTATTGTTGTCC 59.854 38.462 0.00 0.00 0.00 4.02
2989 3085 6.922957 TCCAGAAAAATGCTTGTATTGTTGTC 59.077 34.615 0.00 0.00 0.00 3.18
3010 3121 2.495669 GAGTTGAAGGTCTCCTCTCCAG 59.504 54.545 0.00 0.00 30.89 3.86
3365 3476 1.350684 TCTGTGGGCATAACTTGAGCA 59.649 47.619 0.00 0.00 0.00 4.26
3503 3614 3.059884 GACAACTTGATGCTGAGAACGA 58.940 45.455 0.00 0.00 0.00 3.85
3728 3839 1.827399 GAAACCCTCCGTCTGCCTGA 61.827 60.000 0.00 0.00 0.00 3.86
4208 4319 2.129363 TGGGGAATCTCATGCTCATGA 58.871 47.619 11.57 11.57 44.83 3.07
4367 4478 1.290324 GCTGTGAGGCTTGAGTCGA 59.710 57.895 0.00 0.00 0.00 4.20
4555 4666 3.194861 GAGGCGCATGTTAGTGATACAA 58.805 45.455 10.83 0.00 0.00 2.41
4781 4892 3.991773 CCATTGGCAAGAACACATTTGAG 59.008 43.478 5.96 0.00 0.00 3.02
5176 5289 0.467844 ATGCCAAACAGTGCCTGTCA 60.468 50.000 8.09 3.44 44.62 3.58
5215 5328 0.946221 GCCGATAATGAGTCCTGCGG 60.946 60.000 0.00 0.00 40.17 5.69
5218 5331 0.389391 ACGGCCGATAATGAGTCCTG 59.611 55.000 35.90 0.00 0.00 3.86
5384 5497 5.230942 AGACATACCACAAGAAAGAAGACG 58.769 41.667 0.00 0.00 0.00 4.18
5566 5679 1.097232 TGCATCCTGAAATTGCTCGG 58.903 50.000 0.00 0.00 37.28 4.63
5750 5863 3.986996 TCAGAATGCATCAGTTCTCCA 57.013 42.857 0.00 0.00 32.60 3.86
6039 6152 6.748333 TCAAATGACAGGAAATCATCACTC 57.252 37.500 0.00 0.00 35.72 3.51
6216 6329 3.643554 GGCCCTACCAACCACCGT 61.644 66.667 0.00 0.00 38.86 4.83
6308 6421 4.783560 ATTCAGTGGATCATCATGGTCA 57.216 40.909 0.00 0.00 0.00 4.02
6363 6476 2.627221 CACACAACATTTCCCACCATGA 59.373 45.455 0.00 0.00 0.00 3.07
6494 6607 4.772886 ACTTATTACCTTAGGGTGCTGG 57.227 45.455 6.82 0.00 46.75 4.85
6667 6780 2.415608 CCTCCCACGCTTCGAGCTA 61.416 63.158 0.00 0.00 39.60 3.32
6773 6886 2.354259 CTCCTGTGTGAATCTTGGCTC 58.646 52.381 0.00 0.00 0.00 4.70
6924 7037 7.595130 CCCTGTTAAATGAGTTAAAAAGTCAGC 59.405 37.037 3.78 0.00 43.57 4.26
6964 7079 9.674824 GCAAAAGGATGTATCAGAAATGATAAG 57.325 33.333 0.00 0.00 33.17 1.73
6990 7105 2.428890 CTGACCTAGTCTTAGCACCCTG 59.571 54.545 0.00 0.00 33.15 4.45
7013 7128 1.827789 GTCCCTTGCAACAGCCACA 60.828 57.895 0.00 0.00 0.00 4.17
7040 7155 2.107950 TTACCTGCCGTGAAATCTGG 57.892 50.000 0.00 0.00 0.00 3.86
7043 7158 6.371809 TTTATCATTACCTGCCGTGAAATC 57.628 37.500 0.00 0.00 0.00 2.17
7146 7262 0.918983 CCCCACCCATCAGAAGCTAA 59.081 55.000 0.00 0.00 0.00 3.09
7229 7543 7.342026 TGAGCACCTCAGTTTCTTCTACATATA 59.658 37.037 0.00 0.00 35.39 0.86
7253 7570 3.704566 AGACCACGGTAGCATTAGATTGA 59.295 43.478 0.00 0.00 0.00 2.57
7271 7588 4.560716 GCCACCAATCAACCTAAAAAGACC 60.561 45.833 0.00 0.00 0.00 3.85
7272 7589 4.280929 AGCCACCAATCAACCTAAAAAGAC 59.719 41.667 0.00 0.00 0.00 3.01
7281 7598 0.539438 TCACCAGCCACCAATCAACC 60.539 55.000 0.00 0.00 0.00 3.77
7312 7691 9.255304 GTTTCATTTTCTGTGGTTTGCTTAATA 57.745 29.630 0.00 0.00 0.00 0.98
7313 7692 7.768120 TGTTTCATTTTCTGTGGTTTGCTTAAT 59.232 29.630 0.00 0.00 0.00 1.40
7324 7703 6.979817 TCATGGTTTCTGTTTCATTTTCTGTG 59.020 34.615 0.00 0.00 0.00 3.66
7325 7704 7.111247 TCATGGTTTCTGTTTCATTTTCTGT 57.889 32.000 0.00 0.00 0.00 3.41
7385 7766 8.877864 TTGGACTTTGGACAGTTTCAATATAT 57.122 30.769 0.00 0.00 0.00 0.86
7386 7767 8.698973 TTTGGACTTTGGACAGTTTCAATATA 57.301 30.769 0.00 0.00 0.00 0.86
7405 7786 6.206634 TGAATAGTTCAGTGGTGATTTTGGAC 59.793 38.462 0.00 0.00 34.08 4.02
7406 7787 6.206634 GTGAATAGTTCAGTGGTGATTTTGGA 59.793 38.462 0.00 0.00 41.01 3.53
7407 7788 6.381801 GTGAATAGTTCAGTGGTGATTTTGG 58.618 40.000 0.00 0.00 41.01 3.28
7408 7789 6.016360 TGGTGAATAGTTCAGTGGTGATTTTG 60.016 38.462 0.00 0.00 41.01 2.44
7409 7790 6.068010 TGGTGAATAGTTCAGTGGTGATTTT 58.932 36.000 0.00 0.00 41.01 1.82
7410 7791 5.630121 TGGTGAATAGTTCAGTGGTGATTT 58.370 37.500 0.00 0.00 41.01 2.17
7411 7792 5.013079 TCTGGTGAATAGTTCAGTGGTGATT 59.987 40.000 0.00 0.00 41.01 2.57
7648 8046 0.677731 TCCTGCAAAGCATCGGAAGG 60.678 55.000 0.00 0.00 38.13 3.46
7650 8048 0.250684 TGTCCTGCAAAGCATCGGAA 60.251 50.000 2.07 0.00 35.26 4.30
7803 8203 0.955428 TTGATTGCTCCCGTGCAGAC 60.955 55.000 0.00 0.00 44.27 3.51
7881 8281 9.791820 CTTTGAAAACATATGCACATGATCTAA 57.208 29.630 12.92 8.87 0.00 2.10
7913 8313 0.800300 CGGAGAAGCGAGTTCAGAGC 60.800 60.000 0.00 0.00 37.67 4.09
7976 8377 1.733399 GAAGGTCACGACGCCAGAC 60.733 63.158 0.00 0.64 0.00 3.51
7977 8378 2.649034 GAAGGTCACGACGCCAGA 59.351 61.111 0.00 0.00 0.00 3.86
7978 8379 2.805353 CGAAGGTCACGACGCCAG 60.805 66.667 0.00 0.00 0.00 4.85
7982 8383 0.706729 GTAAAGCGAAGGTCACGACG 59.293 55.000 0.00 0.00 37.06 5.12
8141 8580 3.250040 ACAGCGCCGGATTATTTTATGTC 59.750 43.478 5.05 0.00 0.00 3.06
8143 8582 3.896648 ACAGCGCCGGATTATTTTATG 57.103 42.857 5.05 0.00 0.00 1.90
8191 8630 8.560124 AACCTAGGAACTAATCATTCTGATCT 57.440 34.615 17.98 0.00 42.17 2.75
8217 10316 0.179111 GATGAGACGATCCAACGCCA 60.179 55.000 0.00 0.00 36.70 5.69
8247 10351 2.094417 GTGATTTGACGCCAAGAGCTAC 59.906 50.000 0.00 0.00 40.39 3.58
8249 10353 1.160137 GTGATTTGACGCCAAGAGCT 58.840 50.000 0.00 0.00 40.39 4.09
8280 10384 1.264749 TGGGTGGATGGACTTCTCCG 61.265 60.000 0.00 0.00 39.88 4.63
8285 10389 4.879295 TTGAATATGGGTGGATGGACTT 57.121 40.909 0.00 0.00 0.00 3.01
8310 10416 1.741770 CGGAGGGCGGAAGTTCAAG 60.742 63.158 5.01 0.00 0.00 3.02
8322 10428 4.426313 GGGCTTGGGAACGGAGGG 62.426 72.222 0.00 0.00 0.00 4.30
8323 10429 3.330720 AGGGCTTGGGAACGGAGG 61.331 66.667 0.00 0.00 0.00 4.30
8333 10439 3.207669 GCGAGATGCCAGGGCTTG 61.208 66.667 12.19 0.00 42.51 4.01
8344 10450 0.616111 AGAGTTGGGAGGTGCGAGAT 60.616 55.000 0.00 0.00 0.00 2.75
8364 10474 2.941064 TCTGGTTGGTCTCGTAGTATCG 59.059 50.000 0.00 0.00 0.00 2.92
8365 10475 4.978083 TTCTGGTTGGTCTCGTAGTATC 57.022 45.455 0.00 0.00 0.00 2.24
8367 10477 4.142534 CGAATTCTGGTTGGTCTCGTAGTA 60.143 45.833 3.52 0.00 0.00 1.82
8368 10478 3.367087 CGAATTCTGGTTGGTCTCGTAGT 60.367 47.826 3.52 0.00 0.00 2.73
8376 10493 1.298859 GCGCTCGAATTCTGGTTGGT 61.299 55.000 0.00 0.00 0.00 3.67
8379 10496 1.927895 CTAGCGCTCGAATTCTGGTT 58.072 50.000 16.34 0.00 0.00 3.67
8402 10519 2.488937 TCCACATCGTCGTAAAGCTACA 59.511 45.455 0.00 0.00 0.00 2.74
8434 10551 1.502163 CCGAATCGGCTGATTGGCTC 61.502 60.000 25.35 10.00 44.79 4.70
8678 10809 9.944663 GATATCCGCACTTGTTTATGAAATTTA 57.055 29.630 0.00 0.00 0.00 1.40
8683 10814 4.819630 GGGATATCCGCACTTGTTTATGAA 59.180 41.667 15.69 0.00 36.71 2.57
8684 10815 4.141597 TGGGATATCCGCACTTGTTTATGA 60.142 41.667 15.69 0.00 38.76 2.15
8872 11013 3.047280 GCGGCGTCCACATGTCAA 61.047 61.111 9.37 0.00 0.00 3.18
8950 11092 0.681564 ACCGCAACCAAGTTTCCACA 60.682 50.000 0.00 0.00 0.00 4.17
8951 11093 0.248866 CACCGCAACCAAGTTTCCAC 60.249 55.000 0.00 0.00 0.00 4.02
8952 11094 1.388065 CCACCGCAACCAAGTTTCCA 61.388 55.000 0.00 0.00 0.00 3.53
8954 11096 1.362355 CCCACCGCAACCAAGTTTC 59.638 57.895 0.00 0.00 0.00 2.78
8955 11097 2.791868 GCCCACCGCAACCAAGTTT 61.792 57.895 0.00 0.00 37.47 2.66
8956 11098 3.223589 GCCCACCGCAACCAAGTT 61.224 61.111 0.00 0.00 37.47 2.66
8982 11124 0.978146 AGATCCCAGAAGTCCCACCG 60.978 60.000 0.00 0.00 0.00 4.94
8983 11125 0.543749 CAGATCCCAGAAGTCCCACC 59.456 60.000 0.00 0.00 0.00 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.