Multiple sequence alignment - TraesCS2A01G426900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G426900 chr2A 100.000 5726 0 0 1 5726 679997276 679991551 0.000000e+00 10575.0
1 TraesCS2A01G426900 chr2A 97.619 42 1 0 5685 5726 447903091 447903050 7.960000e-09 73.1
2 TraesCS2A01G426900 chr2D 90.516 3722 245 67 762 4450 537462511 537458865 0.000000e+00 4819.0
3 TraesCS2A01G426900 chr2D 88.767 730 53 12 4614 5325 537458760 537458042 0.000000e+00 867.0
4 TraesCS2A01G426900 chr2D 87.776 499 44 12 4 491 537463506 537463014 8.330000e-158 568.0
5 TraesCS2A01G426900 chr2D 84.385 301 29 11 5371 5653 537457954 537457654 4.370000e-71 279.0
6 TraesCS2A01G426900 chr2B 92.437 2856 135 36 2369 5197 640105630 640102829 0.000000e+00 4002.0
7 TraesCS2A01G426900 chr2B 87.801 1328 92 31 762 2025 640112124 640110803 0.000000e+00 1491.0
8 TraesCS2A01G426900 chr2B 86.832 524 60 4 4 519 640113082 640112560 1.380000e-160 577.0
9 TraesCS2A01G426900 chr2B 89.247 186 16 4 2189 2373 640110790 640110608 4.460000e-56 230.0
10 TraesCS2A01G426900 chr2B 84.722 144 13 7 5517 5659 640102641 640102506 1.000000e-27 135.0
11 TraesCS2A01G426900 chr2B 87.500 56 7 0 604 659 11018233 11018178 1.330000e-06 65.8
12 TraesCS2A01G426900 chr2B 80.233 86 14 3 569 652 477526518 477526602 1.720000e-05 62.1
13 TraesCS2A01G426900 chr3A 83.089 751 93 20 1272 1995 707605408 707604665 0.000000e+00 652.0
14 TraesCS2A01G426900 chr3A 91.469 211 15 1 964 1171 707605611 707605401 2.610000e-73 287.0
15 TraesCS2A01G426900 chr5B 79.240 684 81 25 1273 1912 641993684 641994350 2.470000e-113 420.0
16 TraesCS2A01G426900 chr5B 87.019 208 22 3 964 1171 641993488 641993690 4.460000e-56 230.0
17 TraesCS2A01G426900 chr5B 83.077 65 10 1 588 652 241402237 241402300 2.230000e-04 58.4
18 TraesCS2A01G426900 chr6D 79.379 354 49 20 4073 4415 272108304 272107964 1.610000e-55 228.0
19 TraesCS2A01G426900 chr6D 85.124 121 16 2 3327 3447 272108766 272108648 7.790000e-24 122.0
20 TraesCS2A01G426900 chr6D 87.324 71 7 2 1768 1838 426985771 426985703 4.760000e-11 80.5
21 TraesCS2A01G426900 chr6A 79.191 346 49 19 4073 4408 388209663 388209331 9.660000e-53 219.0
22 TraesCS2A01G426900 chr6A 83.471 121 18 2 3327 3447 388210149 388210031 1.690000e-20 111.0
23 TraesCS2A01G426900 chr6A 97.619 42 1 0 5685 5726 187768741 187768700 7.960000e-09 73.1
24 TraesCS2A01G426900 chr6B 78.371 356 54 19 4073 4415 433271519 433271174 5.810000e-50 209.0
25 TraesCS2A01G426900 chr6B 78.931 318 46 12 1521 1830 642726323 642726019 4.530000e-46 196.0
26 TraesCS2A01G426900 chr6B 83.471 121 18 2 3327 3447 433271995 433271877 1.690000e-20 111.0
27 TraesCS2A01G426900 chr6B 94.872 39 2 0 5685 5723 551954935 551954973 1.720000e-05 62.1
28 TraesCS2A01G426900 chr7B 76.164 365 55 21 4073 4415 438399085 438398731 4.590000e-36 163.0
29 TraesCS2A01G426900 chr7B 84.298 121 17 2 3327 3447 438399561 438399443 3.620000e-22 117.0
30 TraesCS2A01G426900 chr7B 85.294 68 7 2 662 726 202787340 202787407 3.700000e-07 67.6
31 TraesCS2A01G426900 chr4A 91.228 57 5 0 665 721 613157792 613157736 1.710000e-10 78.7
32 TraesCS2A01G426900 chr4A 97.619 42 1 0 5685 5726 546010190 546010149 7.960000e-09 73.1
33 TraesCS2A01G426900 chr7D 90.909 55 3 2 600 653 116468415 116468468 7.960000e-09 73.1
34 TraesCS2A01G426900 chr7D 83.077 65 8 2 588 650 541964143 541964080 8.010000e-04 56.5
35 TraesCS2A01G426900 chr7A 97.619 42 1 0 5685 5726 7865121 7865080 7.960000e-09 73.1
36 TraesCS2A01G426900 chr5A 87.037 54 7 0 599 652 291792518 291792571 1.720000e-05 62.1
37 TraesCS2A01G426900 chr1B 83.582 67 9 2 586 651 322955347 322955282 1.720000e-05 62.1
38 TraesCS2A01G426900 chr1A 79.070 86 16 2 568 652 591096014 591095930 2.230000e-04 58.4
39 TraesCS2A01G426900 chr1D 82.812 64 9 2 589 651 223533020 223532958 8.010000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G426900 chr2A 679991551 679997276 5725 True 10575.00 10575 100.0000 1 5726 1 chr2A.!!$R2 5725
1 TraesCS2A01G426900 chr2D 537457654 537463506 5852 True 1633.25 4819 87.8610 4 5653 4 chr2D.!!$R1 5649
2 TraesCS2A01G426900 chr2B 640102506 640105630 3124 True 2068.50 4002 88.5795 2369 5659 2 chr2B.!!$R2 3290
3 TraesCS2A01G426900 chr2B 640110608 640113082 2474 True 766.00 1491 87.9600 4 2373 3 chr2B.!!$R3 2369
4 TraesCS2A01G426900 chr3A 707604665 707605611 946 True 469.50 652 87.2790 964 1995 2 chr3A.!!$R1 1031
5 TraesCS2A01G426900 chr5B 641993488 641994350 862 False 325.00 420 83.1295 964 1912 2 chr5B.!!$F2 948

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
962 1269 0.393267 AGCCACCGCCGCTTAATAAA 60.393 50.000 0.00 0.0 30.57 1.40 F
1919 2307 3.497640 GGCTGATCTATTTGCTGCTACTG 59.502 47.826 0.00 0.0 0.00 2.74 F
2599 2991 0.670162 GCATGGCCATCGCTGTTAAT 59.330 50.000 24.36 0.0 34.44 1.40 F
3175 3587 2.846193 TGCTGGGTTACAAAGAGTGAC 58.154 47.619 0.00 0.0 36.09 3.67 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2039 2427 3.139397 ACACACCCCTAATTCAGGTTTCA 59.861 43.478 0.00 0.0 43.80 2.69 R
3230 3642 1.194098 CACGCTCTTCAGTTTCTGCTG 59.806 52.381 0.00 0.0 37.81 4.41 R
4070 4497 2.228343 CTCTGCAGAAAGGAAAGGCAAG 59.772 50.000 18.85 0.0 33.58 4.01 R
4922 5377 0.179004 AGGACAATTCCAACCGCACA 60.179 50.000 0.00 0.0 45.72 4.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.696917 AAGTGGTTTTATTTTGTCTGATCAATC 57.303 29.630 0.00 0.00 0.00 2.67
47 48 4.221924 TGATCAATCGTTGTAGAAGGTCCA 59.778 41.667 0.00 0.00 0.00 4.02
57 58 5.661056 TGTAGAAGGTCCACAACTATGAG 57.339 43.478 0.00 0.00 0.00 2.90
82 84 3.984090 AGAGAAAGGGAAAAGGGAGTCTT 59.016 43.478 0.00 0.00 37.28 3.01
94 96 2.494073 AGGGAGTCTTCTTGTCTTAGCG 59.506 50.000 0.00 0.00 0.00 4.26
95 97 2.492484 GGGAGTCTTCTTGTCTTAGCGA 59.508 50.000 0.00 0.00 0.00 4.93
96 98 3.428316 GGGAGTCTTCTTGTCTTAGCGAG 60.428 52.174 0.00 0.00 0.00 5.03
114 117 6.887626 AGCGAGTTTTTAGGTTAATCCAAA 57.112 33.333 0.00 0.00 39.02 3.28
115 118 6.675026 AGCGAGTTTTTAGGTTAATCCAAAC 58.325 36.000 0.00 0.00 39.02 2.93
167 170 1.698506 TGCCGGTGGAAAAGATGTTT 58.301 45.000 1.90 0.00 0.00 2.83
236 239 6.526526 AGTCTTTCTGAGTAAAGGAGGAAAC 58.473 40.000 0.00 0.00 37.13 2.78
292 303 8.810652 TTCTTAACAGTAATCCAAACATTTGC 57.189 30.769 0.00 0.00 36.86 3.68
315 326 3.381908 TGTACAAACCAACACCAATGACC 59.618 43.478 0.00 0.00 0.00 4.02
322 333 4.219115 ACCAACACCAATGACCATGTAAA 58.781 39.130 0.00 0.00 0.00 2.01
327 338 6.084326 ACACCAATGACCATGTAAAGAAAC 57.916 37.500 0.00 0.00 0.00 2.78
333 344 5.235850 TGACCATGTAAAGAAACTAGCCA 57.764 39.130 0.00 0.00 0.00 4.75
348 359 7.393234 AGAAACTAGCCATGTTAAATTGCAGTA 59.607 33.333 0.00 0.00 0.00 2.74
353 364 5.011533 AGCCATGTTAAATTGCAGTAAACCA 59.988 36.000 5.32 0.00 0.00 3.67
363 374 6.724893 ATTGCAGTAAACCACCTAGTTTTT 57.275 33.333 0.00 0.00 40.38 1.94
438 449 6.627395 TGTTTAGTACAAATCAACAGTGGG 57.373 37.500 0.00 0.00 32.64 4.61
454 466 2.028748 AGTGGGTTTCATCTTTGCATGC 60.029 45.455 11.82 11.82 0.00 4.06
472 484 2.688477 TGCCCCCTTTGATTCAAAAGT 58.312 42.857 12.62 0.00 35.73 2.66
511 545 9.238368 CTTATTCCTTGTGTATTTTTCCTACCA 57.762 33.333 0.00 0.00 0.00 3.25
552 586 8.705048 AGAATACTTCGATTTTCTTAGGACAC 57.295 34.615 0.00 0.00 34.02 3.67
553 587 7.488471 AGAATACTTCGATTTTCTTAGGACACG 59.512 37.037 0.00 0.00 34.02 4.49
554 588 5.130292 ACTTCGATTTTCTTAGGACACGA 57.870 39.130 0.00 0.00 0.00 4.35
555 589 5.535333 ACTTCGATTTTCTTAGGACACGAA 58.465 37.500 0.00 0.00 37.09 3.85
556 590 6.164176 ACTTCGATTTTCTTAGGACACGAAT 58.836 36.000 0.00 0.00 37.74 3.34
557 591 7.318141 ACTTCGATTTTCTTAGGACACGAATA 58.682 34.615 0.00 0.00 37.74 1.75
558 592 7.980099 ACTTCGATTTTCTTAGGACACGAATAT 59.020 33.333 0.00 0.00 37.74 1.28
559 593 7.925703 TCGATTTTCTTAGGACACGAATATC 57.074 36.000 0.00 0.00 0.00 1.63
560 594 7.713750 TCGATTTTCTTAGGACACGAATATCT 58.286 34.615 0.00 0.00 0.00 1.98
561 595 8.843262 TCGATTTTCTTAGGACACGAATATCTA 58.157 33.333 0.00 0.00 0.00 1.98
562 596 9.119329 CGATTTTCTTAGGACACGAATATCTAG 57.881 37.037 0.00 0.00 0.00 2.43
563 597 8.819643 ATTTTCTTAGGACACGAATATCTAGC 57.180 34.615 0.00 0.00 0.00 3.42
564 598 5.608676 TCTTAGGACACGAATATCTAGCG 57.391 43.478 0.00 0.00 0.00 4.26
565 599 5.303165 TCTTAGGACACGAATATCTAGCGA 58.697 41.667 0.00 0.00 0.00 4.93
566 600 3.900388 AGGACACGAATATCTAGCGAC 57.100 47.619 0.00 0.00 0.00 5.19
567 601 2.553172 AGGACACGAATATCTAGCGACC 59.447 50.000 0.00 0.00 0.00 4.79
568 602 2.572243 GACACGAATATCTAGCGACCG 58.428 52.381 0.00 0.00 0.00 4.79
569 603 1.945394 ACACGAATATCTAGCGACCGT 59.055 47.619 0.00 0.00 0.00 4.83
570 604 2.032204 ACACGAATATCTAGCGACCGTC 60.032 50.000 0.00 0.00 0.00 4.79
571 605 1.194098 ACGAATATCTAGCGACCGTCG 59.806 52.381 16.72 16.72 43.89 5.12
572 606 1.463693 CGAATATCTAGCGACCGTCGG 60.464 57.143 21.84 10.48 40.84 4.79
573 607 1.802960 GAATATCTAGCGACCGTCGGA 59.197 52.381 20.51 11.38 40.84 4.55
574 608 2.110901 ATATCTAGCGACCGTCGGAT 57.889 50.000 20.51 17.02 40.84 4.18
575 609 1.888215 TATCTAGCGACCGTCGGATT 58.112 50.000 20.51 0.00 40.84 3.01
576 610 1.030457 ATCTAGCGACCGTCGGATTT 58.970 50.000 20.51 0.00 40.84 2.17
577 611 0.813184 TCTAGCGACCGTCGGATTTT 59.187 50.000 20.51 3.33 40.84 1.82
578 612 1.203052 TCTAGCGACCGTCGGATTTTT 59.797 47.619 20.51 0.00 40.84 1.94
579 613 2.423185 TCTAGCGACCGTCGGATTTTTA 59.577 45.455 20.51 2.97 40.84 1.52
580 614 1.636988 AGCGACCGTCGGATTTTTAG 58.363 50.000 20.51 0.00 40.84 1.85
581 615 0.648958 GCGACCGTCGGATTTTTAGG 59.351 55.000 20.51 0.00 40.84 2.69
582 616 0.648958 CGACCGTCGGATTTTTAGGC 59.351 55.000 20.51 0.00 36.00 3.93
583 617 1.729284 GACCGTCGGATTTTTAGGCA 58.271 50.000 20.51 0.00 0.00 4.75
584 618 1.395954 GACCGTCGGATTTTTAGGCAC 59.604 52.381 20.51 0.00 0.00 5.01
593 627 4.378978 CGGATTTTTAGGCACGACAAATCA 60.379 41.667 0.00 0.00 36.13 2.57
598 632 4.433186 TTAGGCACGACAAATCAAATGG 57.567 40.909 0.00 0.00 0.00 3.16
613 647 6.746745 ATCAAATGGTTTTCATGGCAAATC 57.253 33.333 0.00 0.00 35.99 2.17
623 657 4.730600 TCATGGCAAATCATATTCGACG 57.269 40.909 0.00 0.00 0.00 5.12
630 664 4.686091 GCAAATCATATTCGACGAGGATGA 59.314 41.667 19.80 19.80 0.00 2.92
641 675 4.022589 TCGACGAGGATGACAAGTTTAGTT 60.023 41.667 0.00 0.00 0.00 2.24
653 687 4.281688 ACAAGTTTAGTTGGCAAGCATGAT 59.718 37.500 0.00 0.00 0.00 2.45
656 690 6.199937 AGTTTAGTTGGCAAGCATGATAAG 57.800 37.500 0.00 0.00 0.00 1.73
658 692 6.209391 AGTTTAGTTGGCAAGCATGATAAGTT 59.791 34.615 0.00 0.00 0.00 2.66
659 693 4.445452 AGTTGGCAAGCATGATAAGTTG 57.555 40.909 0.00 0.00 0.00 3.16
661 695 4.157289 AGTTGGCAAGCATGATAAGTTGAG 59.843 41.667 0.00 0.00 0.00 3.02
662 696 3.689347 TGGCAAGCATGATAAGTTGAGT 58.311 40.909 0.00 0.00 0.00 3.41
667 701 6.094048 GGCAAGCATGATAAGTTGAGTTTAGA 59.906 38.462 0.00 0.00 0.00 2.10
669 703 8.830580 GCAAGCATGATAAGTTGAGTTTAGATA 58.169 33.333 0.00 0.00 0.00 1.98
691 725 9.521841 AGATATCTTCGTATCTAGACAAATCCA 57.478 33.333 0.00 0.00 39.13 3.41
695 729 9.838339 ATCTTCGTATCTAGACAAATCCAAAAT 57.162 29.630 0.00 0.00 0.00 1.82
709 743 9.634163 ACAAATCCAAAATAAGTAATTCGGAAC 57.366 29.630 0.00 0.00 34.43 3.62
726 760 4.732672 GGAACGTAGGGAGTACTGATTT 57.267 45.455 0.00 0.00 0.00 2.17
727 761 4.680702 GGAACGTAGGGAGTACTGATTTC 58.319 47.826 0.00 0.00 0.00 2.17
729 763 5.450274 GGAACGTAGGGAGTACTGATTTCTC 60.450 48.000 0.00 0.00 0.00 2.87
730 764 4.597004 ACGTAGGGAGTACTGATTTCTCA 58.403 43.478 0.00 0.00 0.00 3.27
731 765 5.202004 ACGTAGGGAGTACTGATTTCTCAT 58.798 41.667 0.00 0.00 0.00 2.90
732 766 5.299782 ACGTAGGGAGTACTGATTTCTCATC 59.700 44.000 0.00 0.00 0.00 2.92
741 1040 5.613358 ACTGATTTCTCATCGAAAACCAC 57.387 39.130 0.00 0.00 44.25 4.16
747 1046 5.862924 TTCTCATCGAAAACCACTGATTC 57.137 39.130 0.00 0.00 0.00 2.52
748 1047 4.253685 TCTCATCGAAAACCACTGATTCC 58.746 43.478 0.00 0.00 0.00 3.01
759 1058 3.774766 ACCACTGATTCCTGCATGTACTA 59.225 43.478 0.00 0.00 0.00 1.82
760 1059 4.122776 CCACTGATTCCTGCATGTACTAC 58.877 47.826 0.00 0.00 0.00 2.73
761 1060 4.141846 CCACTGATTCCTGCATGTACTACT 60.142 45.833 0.00 0.00 0.00 2.57
762 1061 5.069119 CCACTGATTCCTGCATGTACTACTA 59.931 44.000 0.00 0.00 0.00 1.82
763 1062 5.980116 CACTGATTCCTGCATGTACTACTAC 59.020 44.000 0.00 0.00 0.00 2.73
764 1063 5.894393 ACTGATTCCTGCATGTACTACTACT 59.106 40.000 0.00 0.00 0.00 2.57
767 1066 6.831868 TGATTCCTGCATGTACTACTACTGTA 59.168 38.462 0.00 0.00 0.00 2.74
780 1079 7.090953 ACTACTACTGTACTTGCATCTCTTC 57.909 40.000 0.00 0.00 0.00 2.87
781 1080 5.984695 ACTACTGTACTTGCATCTCTTCA 57.015 39.130 0.00 0.00 0.00 3.02
782 1081 6.537453 ACTACTGTACTTGCATCTCTTCAT 57.463 37.500 0.00 0.00 0.00 2.57
783 1082 6.336566 ACTACTGTACTTGCATCTCTTCATG 58.663 40.000 0.00 0.00 0.00 3.07
784 1083 5.411831 ACTGTACTTGCATCTCTTCATGA 57.588 39.130 0.00 0.00 0.00 3.07
785 1084 5.798132 ACTGTACTTGCATCTCTTCATGAA 58.202 37.500 8.12 8.12 0.00 2.57
786 1085 6.233434 ACTGTACTTGCATCTCTTCATGAAA 58.767 36.000 9.88 0.00 0.00 2.69
799 1098 2.368439 TCATGAAAGAAATCCGGCCAG 58.632 47.619 2.24 0.00 0.00 4.85
825 1124 5.222213 ACATGATCCATTTCCTTATCCCCTC 60.222 44.000 0.00 0.00 0.00 4.30
829 1128 3.391296 TCCATTTCCTTATCCCCTCGAAG 59.609 47.826 0.00 0.00 0.00 3.79
860 1167 1.847798 ATAAACCAGCTCCCCGCACA 61.848 55.000 0.00 0.00 42.61 4.57
962 1269 0.393267 AGCCACCGCCGCTTAATAAA 60.393 50.000 0.00 0.00 30.57 1.40
1600 1943 4.581824 TGGATCTGCTTTGAATTAGGATGC 59.418 41.667 0.00 0.00 0.00 3.91
1609 1952 4.248174 TGAATTAGGATGCAATGTCCCA 57.752 40.909 1.05 0.00 36.36 4.37
1665 2027 6.612247 TGTGTAACCAGAAGTGTGTTTATG 57.388 37.500 0.00 0.00 34.36 1.90
1799 2167 5.831702 AGATTCTTCACATTTCTGATGCC 57.168 39.130 0.00 0.00 0.00 4.40
1919 2307 3.497640 GGCTGATCTATTTGCTGCTACTG 59.502 47.826 0.00 0.00 0.00 2.74
1934 2322 7.601856 TGCTGCTACTGCTTTAAAAACATAAT 58.398 30.769 0.00 0.00 40.48 1.28
2024 2412 6.300703 AGGTTTAGTGGTAACTGTTGCATTA 58.699 36.000 10.71 0.00 37.19 1.90
2031 2419 3.506067 GGTAACTGTTGCATTAAGGCAGT 59.494 43.478 15.10 7.26 45.88 4.40
2038 2426 1.340600 TGCATTAAGGCAGTGGTACCC 60.341 52.381 11.36 0.32 39.25 3.69
2039 2427 1.064685 GCATTAAGGCAGTGGTACCCT 60.065 52.381 10.07 3.03 0.00 4.34
2040 2428 2.643551 CATTAAGGCAGTGGTACCCTG 58.356 52.381 20.25 20.25 0.00 4.45
2041 2429 2.032965 TTAAGGCAGTGGTACCCTGA 57.967 50.000 25.81 9.08 31.38 3.86
2042 2430 2.032965 TAAGGCAGTGGTACCCTGAA 57.967 50.000 25.81 10.77 31.38 3.02
2043 2431 1.145571 AAGGCAGTGGTACCCTGAAA 58.854 50.000 25.81 0.00 31.38 2.69
2066 2454 4.407365 CCTGAATTAGGGGTGTGTTTTCT 58.593 43.478 0.00 0.00 43.33 2.52
2071 2459 4.463050 TTAGGGGTGTGTTTTCTCCATT 57.537 40.909 0.00 0.00 0.00 3.16
2099 2487 5.304101 TCATTTTTGTATTCCAAGCACTGGT 59.696 36.000 4.89 0.00 46.51 4.00
2122 2510 9.064706 TGGTCCGTTAATCATTTACTTTTGTTA 57.935 29.630 0.00 0.00 0.00 2.41
2191 2579 8.447833 TGTCTGTTAGTTCAACACTTTTTAGTG 58.552 33.333 3.87 3.87 42.29 2.74
2224 2612 2.741145 TGGGGGTGTATTAATGGTTGC 58.259 47.619 0.00 0.00 0.00 4.17
2323 2711 5.391312 ACAGATGCACCAAAAGGTATTTC 57.609 39.130 0.00 0.00 0.00 2.17
2419 2807 8.225603 TCCAAGGTCATTATCTAATTTTCTGC 57.774 34.615 0.00 0.00 0.00 4.26
2486 2875 8.677300 CCATAATACACAGCAATTACACTCTTT 58.323 33.333 0.00 0.00 0.00 2.52
2494 2883 7.168135 CACAGCAATTACACTCTTTTCCTTTTC 59.832 37.037 0.00 0.00 0.00 2.29
2599 2991 0.670162 GCATGGCCATCGCTGTTAAT 59.330 50.000 24.36 0.00 34.44 1.40
2666 3058 7.173218 TGTTCTTCATTGTTAGGAACTGTGATC 59.827 37.037 0.00 0.00 41.52 2.92
2807 3199 4.731961 GCATTTTCATTCTGTATGTCAGCG 59.268 41.667 0.00 0.00 43.32 5.18
3102 3500 7.285401 GTCCAACCCATTTGACATAAGACATAT 59.715 37.037 0.00 0.00 37.39 1.78
3103 3501 7.285172 TCCAACCCATTTGACATAAGACATATG 59.715 37.037 0.00 0.00 38.79 1.78
3104 3502 7.285172 CCAACCCATTTGACATAAGACATATGA 59.715 37.037 10.38 0.00 39.61 2.15
3105 3503 7.807977 ACCCATTTGACATAAGACATATGAC 57.192 36.000 10.38 2.89 43.52 3.06
3106 3504 6.772716 ACCCATTTGACATAAGACATATGACC 59.227 38.462 10.38 0.64 43.52 4.02
3107 3505 7.000472 CCCATTTGACATAAGACATATGACCT 59.000 38.462 10.38 3.15 43.52 3.85
3108 3506 7.503566 CCCATTTGACATAAGACATATGACCTT 59.496 37.037 10.38 13.72 43.52 3.50
3109 3507 8.562892 CCATTTGACATAAGACATATGACCTTC 58.437 37.037 10.38 0.00 43.52 3.46
3110 3508 9.112725 CATTTGACATAAGACATATGACCTTCA 57.887 33.333 10.38 4.24 43.52 3.02
3111 3509 8.492673 TTTGACATAAGACATATGACCTTCAC 57.507 34.615 10.38 5.82 43.52 3.18
3112 3510 6.582636 TGACATAAGACATATGACCTTCACC 58.417 40.000 10.38 4.29 43.52 4.02
3113 3511 6.384015 TGACATAAGACATATGACCTTCACCT 59.616 38.462 10.38 0.00 43.52 4.00
3114 3512 7.092891 TGACATAAGACATATGACCTTCACCTT 60.093 37.037 10.38 2.60 43.52 3.50
3175 3587 2.846193 TGCTGGGTTACAAAGAGTGAC 58.154 47.619 0.00 0.00 36.09 3.67
3230 3642 7.754851 TGTTAACCTTGGGAAGAATTAGAAC 57.245 36.000 2.48 0.00 0.00 3.01
3238 3650 5.630121 TGGGAAGAATTAGAACAGCAGAAA 58.370 37.500 0.00 0.00 0.00 2.52
3483 3902 6.060136 TCACTGTGTACTACTCAGTTGTACT 58.940 40.000 24.19 7.05 46.90 2.73
3594 4013 4.885325 ACACCTACAGTTTTCCGACAAAAT 59.115 37.500 0.00 0.00 0.00 1.82
3598 4024 7.749126 CACCTACAGTTTTCCGACAAAATAATC 59.251 37.037 0.00 0.00 0.00 1.75
3843 4270 6.869206 ACTTTGCTACAGGTAAATCTCCTA 57.131 37.500 0.00 0.00 33.54 2.94
3899 4326 7.446931 TGAATTGAATTCAAGTAGCTTGGTACA 59.553 33.333 24.17 10.93 45.57 2.90
4034 4461 5.947443 ACTAGACAAATTGCTCTGAATTGC 58.053 37.500 0.00 0.00 0.00 3.56
4270 4697 7.020010 GTGATATTCTTGCTTCAGTGTCTTTG 58.980 38.462 0.00 0.00 0.00 2.77
4283 4710 8.472683 TTCAGTGTCTTTGTTTGGTTTTAATG 57.527 30.769 0.00 0.00 0.00 1.90
4421 4848 7.672239 ACCATGTAAGCTAAATGTTCCCTTTTA 59.328 33.333 0.00 0.00 0.00 1.52
4452 4883 4.202441 ACAAGCTCAATAAGTAGCATGGG 58.798 43.478 0.00 0.00 40.71 4.00
4535 4987 3.088532 TGAATTTTCAATGAGGGTCCCG 58.911 45.455 0.99 0.00 33.55 5.14
4580 5032 9.788960 GTTAAATGGACCATTTTAGATTGAGTC 57.211 33.333 32.06 9.69 40.60 3.36
4581 5033 7.410120 AAATGGACCATTTTAGATTGAGTCC 57.590 36.000 24.12 0.00 40.60 3.85
4590 5042 7.067372 CCATTTTAGATTGAGTCCATGCAACTA 59.933 37.037 0.00 0.00 0.00 2.24
4605 5057 6.688385 CCATGCAACTAATCTTGTAACATTCG 59.312 38.462 0.00 0.00 0.00 3.34
4641 5093 2.161855 CCTGCAAGTTGGCTAACATGA 58.838 47.619 20.46 6.32 37.62 3.07
4643 5095 1.885887 TGCAAGTTGGCTAACATGACC 59.114 47.619 20.46 5.74 37.62 4.02
4644 5096 2.162681 GCAAGTTGGCTAACATGACCT 58.837 47.619 20.46 0.00 37.62 3.85
4707 5159 1.588404 CTTCTCGACGCGTGCATAAAT 59.412 47.619 20.70 0.00 0.00 1.40
4722 5174 3.067320 GCATAAATCCAAAGGAGTGGCTC 59.933 47.826 0.00 0.00 38.68 4.70
4765 5217 8.964420 TTGTTCTTTCAGTCTTTTTGTTAGTG 57.036 30.769 0.00 0.00 0.00 2.74
4768 5220 9.062674 GTTCTTTCAGTCTTTTTGTTAGTGTTC 57.937 33.333 0.00 0.00 0.00 3.18
4792 5244 3.445450 TCACTCTGTGTAGCCTTGAGATC 59.555 47.826 0.00 0.00 34.79 2.75
4795 5247 1.139853 CTGTGTAGCCTTGAGATCCCC 59.860 57.143 0.00 0.00 0.00 4.81
4796 5248 1.204146 GTGTAGCCTTGAGATCCCCA 58.796 55.000 0.00 0.00 0.00 4.96
4922 5377 6.485830 TCCGAGATGAATGAAGGATAAACT 57.514 37.500 0.00 0.00 0.00 2.66
4927 5382 4.944962 TGAATGAAGGATAAACTGTGCG 57.055 40.909 0.00 0.00 0.00 5.34
4939 5394 0.951558 ACTGTGCGGTTGGAATTGTC 59.048 50.000 0.00 0.00 0.00 3.18
4940 5395 0.240945 CTGTGCGGTTGGAATTGTCC 59.759 55.000 0.00 0.00 45.21 4.02
4941 5396 0.179004 TGTGCGGTTGGAATTGTCCT 60.179 50.000 0.00 0.00 45.22 3.85
4942 5397 0.958822 GTGCGGTTGGAATTGTCCTT 59.041 50.000 0.00 0.00 45.22 3.36
4943 5398 0.958091 TGCGGTTGGAATTGTCCTTG 59.042 50.000 0.00 0.00 45.22 3.61
4944 5399 0.388520 GCGGTTGGAATTGTCCTTGC 60.389 55.000 0.00 0.00 45.22 4.01
4945 5400 0.243636 CGGTTGGAATTGTCCTTGCC 59.756 55.000 0.00 0.00 45.22 4.52
4946 5401 1.632589 GGTTGGAATTGTCCTTGCCT 58.367 50.000 0.00 0.00 45.22 4.75
4993 5454 0.833287 GGCTCTCCAACATGCCTCTA 59.167 55.000 0.00 0.00 41.92 2.43
4997 5458 4.314121 GCTCTCCAACATGCCTCTATTAG 58.686 47.826 0.00 0.00 0.00 1.73
5013 5474 8.626526 GCCTCTATTAGTGATATTACTAGAGCC 58.373 40.741 15.59 6.01 34.84 4.70
5085 5546 5.435686 TTCTGGTGCTACTATCCAACATT 57.564 39.130 0.00 0.00 0.00 2.71
5094 5556 7.429340 GTGCTACTATCCAACATTCATTTTTCG 59.571 37.037 0.00 0.00 0.00 3.46
5111 5573 6.925610 TTTTTCGTGATGGATAATCTGGAG 57.074 37.500 0.00 0.00 36.15 3.86
5117 5579 3.509184 TGATGGATAATCTGGAGAGCTCG 59.491 47.826 8.37 0.00 36.15 5.03
5197 5670 4.165866 CTGTGACGAGCAGAGCAG 57.834 61.111 0.00 0.00 36.12 4.24
5204 5677 2.104729 GAGCAGAGCAGAGCCGAG 59.895 66.667 0.00 0.00 0.00 4.63
5210 5683 0.610509 AGAGCAGAGCCGAGTGAAGA 60.611 55.000 0.00 0.00 0.00 2.87
5211 5684 0.459489 GAGCAGAGCCGAGTGAAGAT 59.541 55.000 0.00 0.00 0.00 2.40
5212 5685 0.175302 AGCAGAGCCGAGTGAAGATG 59.825 55.000 0.00 0.00 0.00 2.90
5214 5687 1.140589 AGAGCCGAGTGAAGATGCG 59.859 57.895 0.00 0.00 0.00 4.73
5236 5709 3.064271 GCCACAAACGTGAAAGTCTTACA 59.936 43.478 0.00 0.00 36.43 2.41
5241 5714 5.413523 ACAAACGTGAAAGTCTTACAAGGTT 59.586 36.000 0.00 0.00 0.00 3.50
5307 5784 2.593026 GGAGGACTCCTACTCATCCAG 58.407 57.143 11.09 0.00 46.16 3.86
5325 5802 2.428890 CCAGTAGATCAGTGTCCAGTCC 59.571 54.545 0.00 0.00 0.00 3.85
5327 5804 3.766591 CAGTAGATCAGTGTCCAGTCCTT 59.233 47.826 0.00 0.00 0.00 3.36
5330 5807 2.564947 AGATCAGTGTCCAGTCCTTCAC 59.435 50.000 0.00 0.00 0.00 3.18
5331 5808 1.048601 TCAGTGTCCAGTCCTTCACC 58.951 55.000 0.00 0.00 0.00 4.02
5332 5809 0.035458 CAGTGTCCAGTCCTTCACCC 59.965 60.000 0.00 0.00 0.00 4.61
5333 5810 0.399949 AGTGTCCAGTCCTTCACCCA 60.400 55.000 0.00 0.00 0.00 4.51
5334 5811 0.035458 GTGTCCAGTCCTTCACCCAG 59.965 60.000 0.00 0.00 0.00 4.45
5335 5812 1.003233 GTCCAGTCCTTCACCCAGC 60.003 63.158 0.00 0.00 0.00 4.85
5336 5813 2.224159 TCCAGTCCTTCACCCAGCC 61.224 63.158 0.00 0.00 0.00 4.85
5337 5814 2.528818 CCAGTCCTTCACCCAGCCA 61.529 63.158 0.00 0.00 0.00 4.75
5339 5816 0.038744 CAGTCCTTCACCCAGCCAAT 59.961 55.000 0.00 0.00 0.00 3.16
5340 5817 0.329596 AGTCCTTCACCCAGCCAATC 59.670 55.000 0.00 0.00 0.00 2.67
5341 5818 1.026718 GTCCTTCACCCAGCCAATCG 61.027 60.000 0.00 0.00 0.00 3.34
5342 5819 1.750399 CCTTCACCCAGCCAATCGG 60.750 63.158 0.00 0.00 0.00 4.18
5373 5892 3.807538 CAATGGCGCGCTCAAGCT 61.808 61.111 32.29 12.71 39.32 3.74
5430 5949 0.951558 GTTTGGAACATGAGCCGTGT 59.048 50.000 0.00 0.00 39.30 4.49
5473 5995 3.988976 TCCCAACTCTCTGAATCCAAG 57.011 47.619 0.00 0.00 0.00 3.61
5503 6025 3.760580 AACTGAACCCAACTCTCTCTG 57.239 47.619 0.00 0.00 0.00 3.35
5505 6027 3.309296 ACTGAACCCAACTCTCTCTGAA 58.691 45.455 0.00 0.00 0.00 3.02
5507 6029 5.087323 ACTGAACCCAACTCTCTCTGAATA 58.913 41.667 0.00 0.00 0.00 1.75
5508 6030 5.723887 ACTGAACCCAACTCTCTCTGAATAT 59.276 40.000 0.00 0.00 0.00 1.28
5509 6031 5.982356 TGAACCCAACTCTCTCTGAATATG 58.018 41.667 0.00 0.00 0.00 1.78
5510 6032 5.485353 TGAACCCAACTCTCTCTGAATATGT 59.515 40.000 0.00 0.00 0.00 2.29
5511 6033 5.350504 ACCCAACTCTCTCTGAATATGTG 57.649 43.478 0.00 0.00 0.00 3.21
5514 6036 5.181009 CCAACTCTCTCTGAATATGTGCAA 58.819 41.667 0.00 0.00 0.00 4.08
5537 6082 0.322816 TGCAACCCTCTCTGCAATCC 60.323 55.000 0.00 0.00 45.25 3.01
5541 6086 2.739996 CCCTCTCTGCAATCCGGCT 61.740 63.158 0.00 0.00 34.04 5.52
5558 6106 1.202769 GCTACCCCCTTACCCACACA 61.203 60.000 0.00 0.00 0.00 3.72
5560 6108 0.104567 TACCCCCTTACCCACACACA 60.105 55.000 0.00 0.00 0.00 3.72
5566 6114 2.615493 CCCTTACCCACACACACTGATC 60.615 54.545 0.00 0.00 0.00 2.92
5573 6121 0.888619 ACACACACTGATCGGTCGAT 59.111 50.000 3.54 5.49 37.59 3.59
5613 6161 5.063204 CCAATAAATATCTCCGTGCTTCCA 58.937 41.667 0.00 0.00 0.00 3.53
5616 6164 1.051812 ATATCTCCGTGCTTCCAGGG 58.948 55.000 0.00 0.00 46.03 4.45
5626 6174 1.229984 CTTCCAGGGAAGGGGAGGT 60.230 63.158 18.40 0.00 45.60 3.85
5641 6189 2.287608 GGGAGGTGCGAAGAAAAGTTTG 60.288 50.000 0.00 0.00 0.00 2.93
5653 6201 7.789302 GCGAAGAAAAGTTTGACATGAAAAATC 59.211 33.333 0.00 0.00 0.00 2.17
5655 6203 9.906111 GAAGAAAAGTTTGACATGAAAAATCAC 57.094 29.630 0.00 0.00 0.00 3.06
5659 6207 8.776376 AAAGTTTGACATGAAAAATCACACTT 57.224 26.923 0.00 4.40 42.35 3.16
5660 6208 8.776376 AAGTTTGACATGAAAAATCACACTTT 57.224 26.923 0.00 0.00 39.26 2.66
5661 6209 8.776376 AGTTTGACATGAAAAATCACACTTTT 57.224 26.923 0.00 0.00 31.01 2.27
5662 6210 8.658609 AGTTTGACATGAAAAATCACACTTTTG 58.341 29.630 0.00 0.00 31.01 2.44
5663 6211 8.442384 GTTTGACATGAAAAATCACACTTTTGT 58.558 29.630 0.00 0.00 35.84 2.83
5664 6212 8.545229 TTGACATGAAAAATCACACTTTTGTT 57.455 26.923 0.00 0.00 31.66 2.83
5665 6213 8.545229 TGACATGAAAAATCACACTTTTGTTT 57.455 26.923 0.00 0.00 31.66 2.83
5666 6214 9.645059 TGACATGAAAAATCACACTTTTGTTTA 57.355 25.926 0.00 0.00 31.66 2.01
5696 6244 7.925703 TTTTACTACGAAGACTTTGTCTCTG 57.074 36.000 11.50 4.31 42.59 3.35
5697 6245 3.903360 ACTACGAAGACTTTGTCTCTGC 58.097 45.455 11.50 0.00 42.59 4.26
5698 6246 2.156343 ACGAAGACTTTGTCTCTGCC 57.844 50.000 1.92 0.00 42.59 4.85
5699 6247 1.063806 CGAAGACTTTGTCTCTGCCG 58.936 55.000 0.42 0.46 42.59 5.69
5700 6248 1.335964 CGAAGACTTTGTCTCTGCCGA 60.336 52.381 0.42 0.00 42.59 5.54
5701 6249 2.062519 GAAGACTTTGTCTCTGCCGAC 58.937 52.381 0.42 0.00 42.59 4.79
5702 6250 0.318762 AGACTTTGTCTCTGCCGACC 59.681 55.000 0.00 0.00 38.71 4.79
5703 6251 0.033504 GACTTTGTCTCTGCCGACCA 59.966 55.000 0.00 0.00 32.97 4.02
5704 6252 0.468226 ACTTTGTCTCTGCCGACCAA 59.532 50.000 0.00 0.00 32.97 3.67
5705 6253 0.868406 CTTTGTCTCTGCCGACCAAC 59.132 55.000 0.00 0.00 32.97 3.77
5706 6254 0.179234 TTTGTCTCTGCCGACCAACA 59.821 50.000 0.00 0.00 32.97 3.33
5707 6255 0.531974 TTGTCTCTGCCGACCAACAC 60.532 55.000 0.00 0.00 32.97 3.32
5708 6256 1.367840 GTCTCTGCCGACCAACACT 59.632 57.895 0.00 0.00 0.00 3.55
5709 6257 0.946221 GTCTCTGCCGACCAACACTG 60.946 60.000 0.00 0.00 0.00 3.66
5710 6258 2.280797 TCTGCCGACCAACACTGC 60.281 61.111 0.00 0.00 0.00 4.40
5711 6259 2.281070 CTGCCGACCAACACTGCT 60.281 61.111 0.00 0.00 0.00 4.24
5712 6260 1.893808 CTGCCGACCAACACTGCTT 60.894 57.895 0.00 0.00 0.00 3.91
5713 6261 1.845809 CTGCCGACCAACACTGCTTC 61.846 60.000 0.00 0.00 0.00 3.86
5714 6262 1.598130 GCCGACCAACACTGCTTCT 60.598 57.895 0.00 0.00 0.00 2.85
5715 6263 0.320421 GCCGACCAACACTGCTTCTA 60.320 55.000 0.00 0.00 0.00 2.10
5716 6264 1.714794 CCGACCAACACTGCTTCTAG 58.285 55.000 0.00 0.00 0.00 2.43
5717 6265 1.673033 CCGACCAACACTGCTTCTAGG 60.673 57.143 0.00 0.00 0.00 3.02
5718 6266 1.673033 CGACCAACACTGCTTCTAGGG 60.673 57.143 0.00 0.00 0.00 3.53
5719 6267 1.348036 GACCAACACTGCTTCTAGGGT 59.652 52.381 0.00 0.00 35.36 4.34
5720 6268 1.072331 ACCAACACTGCTTCTAGGGTG 59.928 52.381 0.00 0.00 33.80 4.61
5721 6269 1.347707 CCAACACTGCTTCTAGGGTGA 59.652 52.381 0.00 0.00 33.80 4.02
5722 6270 2.417719 CAACACTGCTTCTAGGGTGAC 58.582 52.381 0.00 0.00 33.80 3.67
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 9.743057 TCAGACAAAATAAAACCACTTGTATTG 57.257 29.630 0.00 0.00 30.62 1.90
3 4 9.126151 TGATCAGACAAAATAAAACCACTTGTA 57.874 29.630 0.00 0.00 30.62 2.41
5 6 8.870160 TTGATCAGACAAAATAAAACCACTTG 57.130 30.769 0.00 0.00 0.00 3.16
6 7 9.696917 GATTGATCAGACAAAATAAAACCACTT 57.303 29.630 0.00 0.00 33.44 3.16
7 8 8.023128 CGATTGATCAGACAAAATAAAACCACT 58.977 33.333 0.00 0.00 33.44 4.00
8 9 7.807907 ACGATTGATCAGACAAAATAAAACCAC 59.192 33.333 0.00 0.00 33.44 4.16
9 10 7.881142 ACGATTGATCAGACAAAATAAAACCA 58.119 30.769 0.00 0.00 33.44 3.67
10 11 8.638565 CAACGATTGATCAGACAAAATAAAACC 58.361 33.333 0.00 0.00 33.44 3.27
16 17 7.905604 TCTACAACGATTGATCAGACAAAAT 57.094 32.000 0.00 0.00 33.44 1.82
21 22 5.411781 ACCTTCTACAACGATTGATCAGAC 58.588 41.667 0.00 0.00 0.00 3.51
28 29 3.659786 TGTGGACCTTCTACAACGATTG 58.340 45.455 0.00 0.00 34.87 2.67
47 48 5.094387 TCCCTTTCTCTTCCTCATAGTTGT 58.906 41.667 0.00 0.00 0.00 3.32
57 58 3.074687 ACTCCCTTTTCCCTTTCTCTTCC 59.925 47.826 0.00 0.00 0.00 3.46
82 84 5.850614 ACCTAAAAACTCGCTAAGACAAGA 58.149 37.500 0.00 0.00 0.00 3.02
94 96 7.534723 AGGGTTTGGATTAACCTAAAAACTC 57.465 36.000 5.60 0.00 45.58 3.01
95 97 7.732025 CAAGGGTTTGGATTAACCTAAAAACT 58.268 34.615 5.60 0.00 45.58 2.66
96 98 7.956420 CAAGGGTTTGGATTAACCTAAAAAC 57.044 36.000 5.60 0.00 45.58 2.43
114 117 0.037734 CTTAACGGGCTTCCAAGGGT 59.962 55.000 0.00 0.00 0.00 4.34
115 118 0.037734 ACTTAACGGGCTTCCAAGGG 59.962 55.000 0.00 0.00 0.00 3.95
116 119 2.235402 TCTACTTAACGGGCTTCCAAGG 59.765 50.000 0.00 0.00 0.00 3.61
122 125 2.026636 TGCCATTCTACTTAACGGGCTT 60.027 45.455 0.00 0.00 40.51 4.35
124 127 1.940613 CTGCCATTCTACTTAACGGGC 59.059 52.381 0.00 0.00 40.29 6.13
211 214 7.289317 TGTTTCCTCCTTTACTCAGAAAGACTA 59.711 37.037 0.00 0.00 38.48 2.59
290 301 2.130272 TGGTGTTGGTTTGTACAGCA 57.870 45.000 0.00 0.00 46.79 4.41
292 303 4.499019 GGTCATTGGTGTTGGTTTGTACAG 60.499 45.833 0.00 0.00 0.00 2.74
322 333 6.209391 ACTGCAATTTAACATGGCTAGTTTCT 59.791 34.615 0.00 0.00 0.00 2.52
327 338 6.751888 GGTTTACTGCAATTTAACATGGCTAG 59.248 38.462 0.00 0.00 0.00 3.42
333 344 6.664428 AGGTGGTTTACTGCAATTTAACAT 57.336 33.333 0.00 0.00 0.00 2.71
341 352 7.285858 ACATAAAAACTAGGTGGTTTACTGCAA 59.714 33.333 0.00 0.00 38.30 4.08
379 390 9.677567 GTGCAAATTTCATAACTTTGACTCTTA 57.322 29.630 6.64 0.00 32.83 2.10
435 446 1.275856 GGCATGCAAAGATGAAACCCA 59.724 47.619 21.36 0.00 0.00 4.51
437 448 1.405933 GGGGCATGCAAAGATGAAACC 60.406 52.381 21.36 6.89 0.00 3.27
438 449 1.405933 GGGGGCATGCAAAGATGAAAC 60.406 52.381 21.36 0.00 0.00 2.78
454 466 4.156477 TGGTACTTTTGAATCAAAGGGGG 58.844 43.478 19.55 9.60 35.26 5.40
529 563 7.318141 TCGTGTCCTAAGAAAATCGAAGTATT 58.682 34.615 0.00 0.00 0.00 1.89
532 566 5.130292 TCGTGTCCTAAGAAAATCGAAGT 57.870 39.130 0.00 0.00 0.00 3.01
535 569 7.713750 AGATATTCGTGTCCTAAGAAAATCGA 58.286 34.615 0.00 0.00 30.65 3.59
536 570 7.932120 AGATATTCGTGTCCTAAGAAAATCG 57.068 36.000 0.00 0.00 30.65 3.34
537 571 8.917655 GCTAGATATTCGTGTCCTAAGAAAATC 58.082 37.037 0.00 0.00 30.65 2.17
538 572 7.595502 CGCTAGATATTCGTGTCCTAAGAAAAT 59.404 37.037 0.00 0.00 30.65 1.82
539 573 6.916387 CGCTAGATATTCGTGTCCTAAGAAAA 59.084 38.462 0.00 0.00 30.65 2.29
540 574 6.261603 TCGCTAGATATTCGTGTCCTAAGAAA 59.738 38.462 0.00 0.00 30.65 2.52
541 575 5.761726 TCGCTAGATATTCGTGTCCTAAGAA 59.238 40.000 0.00 0.00 0.00 2.52
542 576 5.178996 GTCGCTAGATATTCGTGTCCTAAGA 59.821 44.000 0.00 0.00 0.00 2.10
543 577 5.383958 GTCGCTAGATATTCGTGTCCTAAG 58.616 45.833 0.00 0.00 0.00 2.18
544 578 4.214971 GGTCGCTAGATATTCGTGTCCTAA 59.785 45.833 0.00 0.00 0.00 2.69
545 579 3.750130 GGTCGCTAGATATTCGTGTCCTA 59.250 47.826 0.00 0.00 0.00 2.94
546 580 2.553172 GGTCGCTAGATATTCGTGTCCT 59.447 50.000 0.00 0.00 0.00 3.85
547 581 2.664971 CGGTCGCTAGATATTCGTGTCC 60.665 54.545 0.00 0.00 0.00 4.02
548 582 2.032204 ACGGTCGCTAGATATTCGTGTC 60.032 50.000 0.00 0.00 0.00 3.67
549 583 1.945394 ACGGTCGCTAGATATTCGTGT 59.055 47.619 0.00 0.00 0.00 4.49
550 584 2.572243 GACGGTCGCTAGATATTCGTG 58.428 52.381 0.00 0.00 0.00 4.35
551 585 1.194098 CGACGGTCGCTAGATATTCGT 59.806 52.381 18.36 0.00 31.14 3.85
552 586 1.463693 CCGACGGTCGCTAGATATTCG 60.464 57.143 24.26 3.52 38.82 3.34
553 587 1.802960 TCCGACGGTCGCTAGATATTC 59.197 52.381 24.26 0.00 38.82 1.75
554 588 1.888215 TCCGACGGTCGCTAGATATT 58.112 50.000 24.26 0.00 38.82 1.28
555 589 2.110901 ATCCGACGGTCGCTAGATAT 57.889 50.000 24.26 7.73 38.82 1.63
556 590 1.888215 AATCCGACGGTCGCTAGATA 58.112 50.000 24.26 5.82 38.82 1.98
557 591 1.030457 AAATCCGACGGTCGCTAGAT 58.970 50.000 24.26 17.84 38.82 1.98
558 592 0.813184 AAAATCCGACGGTCGCTAGA 59.187 50.000 24.26 16.41 38.82 2.43
559 593 1.636988 AAAAATCCGACGGTCGCTAG 58.363 50.000 24.26 11.58 38.82 3.42
560 594 2.480073 CCTAAAAATCCGACGGTCGCTA 60.480 50.000 24.26 14.72 38.82 4.26
561 595 1.636988 CTAAAAATCCGACGGTCGCT 58.363 50.000 24.26 11.15 38.82 4.93
562 596 0.648958 CCTAAAAATCCGACGGTCGC 59.351 55.000 24.26 0.00 38.82 5.19
563 597 0.648958 GCCTAAAAATCCGACGGTCG 59.351 55.000 22.88 22.88 40.07 4.79
564 598 1.395954 GTGCCTAAAAATCCGACGGTC 59.604 52.381 14.79 0.00 0.00 4.79
565 599 1.445871 GTGCCTAAAAATCCGACGGT 58.554 50.000 14.79 0.00 0.00 4.83
566 600 0.372334 CGTGCCTAAAAATCCGACGG 59.628 55.000 7.84 7.84 0.00 4.79
567 601 1.060122 GTCGTGCCTAAAAATCCGACG 59.940 52.381 0.00 0.00 35.91 5.12
568 602 2.070783 TGTCGTGCCTAAAAATCCGAC 58.929 47.619 0.00 0.00 43.49 4.79
569 603 2.459060 TGTCGTGCCTAAAAATCCGA 57.541 45.000 0.00 0.00 0.00 4.55
570 604 3.546002 TTTGTCGTGCCTAAAAATCCG 57.454 42.857 0.00 0.00 0.00 4.18
571 605 5.054390 TGATTTGTCGTGCCTAAAAATCC 57.946 39.130 0.00 0.00 36.74 3.01
572 606 7.411804 CCATTTGATTTGTCGTGCCTAAAAATC 60.412 37.037 0.00 0.00 37.62 2.17
573 607 6.368516 CCATTTGATTTGTCGTGCCTAAAAAT 59.631 34.615 0.00 0.00 0.00 1.82
574 608 5.694006 CCATTTGATTTGTCGTGCCTAAAAA 59.306 36.000 0.00 0.00 0.00 1.94
575 609 5.221342 ACCATTTGATTTGTCGTGCCTAAAA 60.221 36.000 0.00 0.00 0.00 1.52
576 610 4.279671 ACCATTTGATTTGTCGTGCCTAAA 59.720 37.500 0.00 0.00 0.00 1.85
577 611 3.823873 ACCATTTGATTTGTCGTGCCTAA 59.176 39.130 0.00 0.00 0.00 2.69
578 612 3.417101 ACCATTTGATTTGTCGTGCCTA 58.583 40.909 0.00 0.00 0.00 3.93
579 613 2.238521 ACCATTTGATTTGTCGTGCCT 58.761 42.857 0.00 0.00 0.00 4.75
580 614 2.723124 ACCATTTGATTTGTCGTGCC 57.277 45.000 0.00 0.00 0.00 5.01
581 615 4.505922 TGAAAACCATTTGATTTGTCGTGC 59.494 37.500 0.00 0.00 0.00 5.34
582 616 6.346758 CCATGAAAACCATTTGATTTGTCGTG 60.347 38.462 0.00 0.00 31.94 4.35
583 617 5.695816 CCATGAAAACCATTTGATTTGTCGT 59.304 36.000 0.00 0.00 31.94 4.34
584 618 5.389725 GCCATGAAAACCATTTGATTTGTCG 60.390 40.000 0.00 0.00 31.94 4.35
593 627 8.810990 AATATGATTTGCCATGAAAACCATTT 57.189 26.923 6.13 0.00 31.94 2.32
598 632 6.075415 CGTCGAATATGATTTGCCATGAAAAC 60.075 38.462 0.00 0.00 0.00 2.43
613 647 4.611943 ACTTGTCATCCTCGTCGAATATG 58.388 43.478 9.24 9.24 0.00 1.78
623 657 4.072131 TGCCAACTAAACTTGTCATCCTC 58.928 43.478 0.00 0.00 0.00 3.71
630 664 3.636300 TCATGCTTGCCAACTAAACTTGT 59.364 39.130 0.00 0.00 0.00 3.16
641 675 3.689347 ACTCAACTTATCATGCTTGCCA 58.311 40.909 0.00 0.00 0.00 4.92
669 703 9.838339 ATTTTGGATTTGTCTAGATACGAAGAT 57.162 29.630 0.00 0.00 0.00 2.40
682 716 9.849166 TTCCGAATTACTTATTTTGGATTTGTC 57.151 29.630 2.15 0.00 33.60 3.18
684 718 8.794406 CGTTCCGAATTACTTATTTTGGATTTG 58.206 33.333 2.15 0.00 33.60 2.32
685 719 8.517056 ACGTTCCGAATTACTTATTTTGGATTT 58.483 29.630 2.15 0.00 33.60 2.17
686 720 8.047413 ACGTTCCGAATTACTTATTTTGGATT 57.953 30.769 2.15 0.00 33.60 3.01
687 721 7.619964 ACGTTCCGAATTACTTATTTTGGAT 57.380 32.000 2.15 0.00 33.60 3.41
689 723 7.404203 CCTACGTTCCGAATTACTTATTTTGG 58.596 38.462 0.00 0.00 0.00 3.28
690 724 7.278424 TCCCTACGTTCCGAATTACTTATTTTG 59.722 37.037 0.00 0.00 0.00 2.44
691 725 7.330262 TCCCTACGTTCCGAATTACTTATTTT 58.670 34.615 0.00 0.00 0.00 1.82
692 726 6.877236 TCCCTACGTTCCGAATTACTTATTT 58.123 36.000 0.00 0.00 0.00 1.40
694 728 5.595952 ACTCCCTACGTTCCGAATTACTTAT 59.404 40.000 0.00 0.00 0.00 1.73
695 729 4.949856 ACTCCCTACGTTCCGAATTACTTA 59.050 41.667 0.00 0.00 0.00 2.24
696 730 3.766051 ACTCCCTACGTTCCGAATTACTT 59.234 43.478 0.00 0.00 0.00 2.24
697 731 3.359950 ACTCCCTACGTTCCGAATTACT 58.640 45.455 0.00 0.00 0.00 2.24
698 732 3.790152 ACTCCCTACGTTCCGAATTAC 57.210 47.619 0.00 0.00 0.00 1.89
699 733 4.336433 CAGTACTCCCTACGTTCCGAATTA 59.664 45.833 0.00 0.00 0.00 1.40
700 734 3.129988 CAGTACTCCCTACGTTCCGAATT 59.870 47.826 0.00 0.00 0.00 2.17
702 736 2.086869 CAGTACTCCCTACGTTCCGAA 58.913 52.381 0.00 0.00 0.00 4.30
703 737 1.278985 TCAGTACTCCCTACGTTCCGA 59.721 52.381 0.00 0.00 0.00 4.55
705 739 4.401837 AGAAATCAGTACTCCCTACGTTCC 59.598 45.833 0.00 0.00 0.00 3.62
706 740 5.125097 TGAGAAATCAGTACTCCCTACGTTC 59.875 44.000 0.00 0.00 0.00 3.95
709 743 5.561145 CGATGAGAAATCAGTACTCCCTACG 60.561 48.000 0.00 0.00 0.00 3.51
710 744 5.531659 TCGATGAGAAATCAGTACTCCCTAC 59.468 44.000 0.00 0.00 0.00 3.18
712 746 4.537751 TCGATGAGAAATCAGTACTCCCT 58.462 43.478 0.00 0.00 0.00 4.20
713 747 4.920640 TCGATGAGAAATCAGTACTCCC 57.079 45.455 0.00 0.00 0.00 4.30
714 748 6.036191 GGTTTTCGATGAGAAATCAGTACTCC 59.964 42.308 0.00 0.00 46.98 3.85
715 749 6.590292 TGGTTTTCGATGAGAAATCAGTACTC 59.410 38.462 0.00 0.00 46.98 2.59
716 750 6.369065 GTGGTTTTCGATGAGAAATCAGTACT 59.631 38.462 0.00 0.00 46.98 2.73
717 751 6.369065 AGTGGTTTTCGATGAGAAATCAGTAC 59.631 38.462 0.11 0.00 46.98 2.73
718 752 6.368791 CAGTGGTTTTCGATGAGAAATCAGTA 59.631 38.462 1.57 0.00 46.98 2.74
719 753 5.180117 CAGTGGTTTTCGATGAGAAATCAGT 59.820 40.000 0.00 0.00 46.98 3.41
721 755 5.304778 TCAGTGGTTTTCGATGAGAAATCA 58.695 37.500 0.00 0.00 46.98 2.57
722 756 5.862924 TCAGTGGTTTTCGATGAGAAATC 57.137 39.130 0.00 0.00 46.98 2.17
725 759 4.695455 GGAATCAGTGGTTTTCGATGAGAA 59.305 41.667 0.00 0.00 37.01 2.87
726 760 4.020218 AGGAATCAGTGGTTTTCGATGAGA 60.020 41.667 0.00 0.00 0.00 3.27
727 761 4.093998 CAGGAATCAGTGGTTTTCGATGAG 59.906 45.833 0.00 0.00 0.00 2.90
729 763 3.426695 GCAGGAATCAGTGGTTTTCGATG 60.427 47.826 0.00 0.00 0.00 3.84
730 764 2.749621 GCAGGAATCAGTGGTTTTCGAT 59.250 45.455 0.00 0.00 0.00 3.59
731 765 2.151202 GCAGGAATCAGTGGTTTTCGA 58.849 47.619 0.00 0.00 0.00 3.71
732 766 1.879380 TGCAGGAATCAGTGGTTTTCG 59.121 47.619 0.00 0.00 0.00 3.46
741 1040 6.183360 ACAGTAGTAGTACATGCAGGAATCAG 60.183 42.308 4.84 0.00 0.00 2.90
747 1046 6.266323 CAAGTACAGTAGTAGTACATGCAGG 58.734 44.000 10.33 0.00 43.24 4.85
759 1058 5.984695 TGAAGAGATGCAAGTACAGTAGT 57.015 39.130 0.00 0.00 0.00 2.73
760 1059 6.567959 TCATGAAGAGATGCAAGTACAGTAG 58.432 40.000 0.00 0.00 0.00 2.57
761 1060 6.530019 TCATGAAGAGATGCAAGTACAGTA 57.470 37.500 0.00 0.00 0.00 2.74
762 1061 5.411831 TCATGAAGAGATGCAAGTACAGT 57.588 39.130 0.00 0.00 0.00 3.55
763 1062 6.592994 TCTTTCATGAAGAGATGCAAGTACAG 59.407 38.462 8.41 0.00 39.44 2.74
764 1063 6.466812 TCTTTCATGAAGAGATGCAAGTACA 58.533 36.000 8.41 0.00 39.44 2.90
767 1066 6.889301 TTTCTTTCATGAAGAGATGCAAGT 57.111 33.333 8.41 0.00 44.80 3.16
780 1079 2.368439 TCTGGCCGGATTTCTTTCATG 58.632 47.619 11.27 0.00 0.00 3.07
781 1080 2.755103 GTTCTGGCCGGATTTCTTTCAT 59.245 45.455 16.96 0.00 0.00 2.57
782 1081 2.159382 GTTCTGGCCGGATTTCTTTCA 58.841 47.619 16.96 0.00 0.00 2.69
783 1082 2.159382 TGTTCTGGCCGGATTTCTTTC 58.841 47.619 16.96 1.35 0.00 2.62
784 1083 2.286365 TGTTCTGGCCGGATTTCTTT 57.714 45.000 16.96 0.00 0.00 2.52
785 1084 2.094675 CATGTTCTGGCCGGATTTCTT 58.905 47.619 16.96 4.94 0.00 2.52
786 1085 1.281867 TCATGTTCTGGCCGGATTTCT 59.718 47.619 16.96 0.00 0.00 2.52
799 1098 5.478332 GGGGATAAGGAAATGGATCATGTTC 59.522 44.000 0.00 0.00 0.00 3.18
860 1167 4.083862 GAAAGCGGGCGAGGAGGT 62.084 66.667 0.00 0.00 0.00 3.85
1386 1715 1.860078 GGCCTTCTCGAACACGTTG 59.140 57.895 0.00 0.00 0.00 4.10
1609 1952 4.895668 AGGCATCACAATGTCCAAAATT 57.104 36.364 0.00 0.00 38.31 1.82
1624 1967 5.391312 ACACATCCTAAAAACAAGGCATC 57.609 39.130 0.00 0.00 33.84 3.91
1665 2027 4.215399 ACATGCAACTACAATGTACCACAC 59.785 41.667 0.00 0.00 0.00 3.82
1780 2148 5.011586 TCATGGCATCAGAAATGTGAAGAA 58.988 37.500 0.00 0.00 0.00 2.52
1824 2192 8.618702 AGATGAAATATTTGAGTGCTATGGAG 57.381 34.615 5.17 0.00 0.00 3.86
1919 2307 9.476202 ACTGTTCTGGAATTATGTTTTTAAAGC 57.524 29.630 0.00 0.00 0.00 3.51
1934 2322 4.079253 GGGAAGCAAATACTGTTCTGGAA 58.921 43.478 0.00 0.00 0.00 3.53
2001 2389 5.447624 AATGCAACAGTTACCACTAAACC 57.552 39.130 0.00 0.00 0.00 3.27
2031 2419 4.018779 CCTAATTCAGGTTTCAGGGTACCA 60.019 45.833 15.35 0.00 46.62 3.25
2038 2426 3.758554 CACACCCCTAATTCAGGTTTCAG 59.241 47.826 0.00 0.00 43.80 3.02
2039 2427 3.139397 ACACACCCCTAATTCAGGTTTCA 59.861 43.478 0.00 0.00 43.80 2.69
2040 2428 3.763057 ACACACCCCTAATTCAGGTTTC 58.237 45.455 0.00 0.00 43.80 2.78
2041 2429 3.895704 ACACACCCCTAATTCAGGTTT 57.104 42.857 0.00 0.00 43.80 3.27
2042 2430 3.895704 AACACACCCCTAATTCAGGTT 57.104 42.857 0.00 0.00 43.80 3.50
2043 2431 3.895704 AAACACACCCCTAATTCAGGT 57.104 42.857 0.00 0.00 43.80 4.00
2071 2459 9.421806 CAGTGCTTGGAATACAAAAATGATAAA 57.578 29.630 0.00 0.00 38.91 1.40
2191 2579 9.810870 TTAATACACCCCCAAATATGGTATAAC 57.189 33.333 0.00 0.00 46.01 1.89
2261 2649 4.643463 TGAAATGCAATGTTGGAGCAAAT 58.357 34.783 0.00 0.00 42.15 2.32
2323 2711 8.792831 AATGATATTTCGAAATTTGCTAGCAG 57.207 30.769 27.10 5.23 0.00 4.24
2405 2793 9.153721 CAAAAATTGCAGGCAGAAAATTAGATA 57.846 29.630 0.00 0.00 0.00 1.98
2419 2807 6.629128 TGGTGTACATATCAAAAATTGCAGG 58.371 36.000 0.00 0.00 0.00 4.85
2519 2908 4.641868 TCCAATAGAGGTATTTGGGGAGT 58.358 43.478 0.00 0.00 0.00 3.85
2807 3199 6.510317 GCATAGATTTGAAAGACGTAGGAAGC 60.510 42.308 0.00 0.00 0.00 3.86
3102 3500 2.408565 AGAAGGTGAAGGTGAAGGTCA 58.591 47.619 0.00 0.00 0.00 4.02
3103 3501 3.142174 CAAGAAGGTGAAGGTGAAGGTC 58.858 50.000 0.00 0.00 0.00 3.85
3104 3502 2.777692 TCAAGAAGGTGAAGGTGAAGGT 59.222 45.455 0.00 0.00 0.00 3.50
3105 3503 3.492102 TCAAGAAGGTGAAGGTGAAGG 57.508 47.619 0.00 0.00 0.00 3.46
3106 3504 3.565902 GGTTCAAGAAGGTGAAGGTGAAG 59.434 47.826 0.00 0.00 38.17 3.02
3107 3505 3.551846 GGTTCAAGAAGGTGAAGGTGAA 58.448 45.455 0.00 0.00 38.17 3.18
3108 3506 2.158667 GGGTTCAAGAAGGTGAAGGTGA 60.159 50.000 0.00 0.00 38.17 4.02
3109 3507 2.230660 GGGTTCAAGAAGGTGAAGGTG 58.769 52.381 0.00 0.00 38.17 4.00
3110 3508 1.850345 TGGGTTCAAGAAGGTGAAGGT 59.150 47.619 0.00 0.00 38.17 3.50
3111 3509 2.656947 TGGGTTCAAGAAGGTGAAGG 57.343 50.000 0.00 0.00 38.17 3.46
3112 3510 6.209391 ACAAATATGGGTTCAAGAAGGTGAAG 59.791 38.462 0.00 0.00 38.17 3.02
3113 3511 6.015519 CACAAATATGGGTTCAAGAAGGTGAA 60.016 38.462 0.00 0.00 35.14 3.18
3114 3512 5.476599 CACAAATATGGGTTCAAGAAGGTGA 59.523 40.000 0.00 0.00 0.00 4.02
3175 3587 4.935885 AAGAGTCTTGCTCATTAAAGCG 57.064 40.909 4.10 0.00 46.47 4.68
3230 3642 1.194098 CACGCTCTTCAGTTTCTGCTG 59.806 52.381 0.00 0.00 37.81 4.41
3238 3650 1.301244 CAGGCACACGCTCTTCAGT 60.301 57.895 0.00 0.00 38.60 3.41
3366 3780 5.985781 TCGAACTTATCACAAGCTTGTTTC 58.014 37.500 29.23 24.58 39.91 2.78
3598 4024 9.277565 GTACAATTACACAGCAACATTATCAAG 57.722 33.333 0.00 0.00 0.00 3.02
3843 4270 2.502142 TGCTCATCATGCAAGGACTT 57.498 45.000 0.00 0.00 37.51 3.01
3999 4426 9.553064 AGCAATTTGTCTAGTAGGATTTCATAG 57.447 33.333 0.00 0.00 0.00 2.23
4000 4427 9.547753 GAGCAATTTGTCTAGTAGGATTTCATA 57.452 33.333 0.00 0.00 0.00 2.15
4070 4497 2.228343 CTCTGCAGAAAGGAAAGGCAAG 59.772 50.000 18.85 0.00 33.58 4.01
4270 4697 8.601845 AAGGAAAGCATACATTAAAACCAAAC 57.398 30.769 0.00 0.00 0.00 2.93
4421 4848 4.536489 ACTTATTGAGCTTGTAAGGAGGGT 59.464 41.667 14.35 0.00 31.38 4.34
4452 4883 7.417612 TCTAAAGCAAGAAAACATGACACTTC 58.582 34.615 0.00 0.00 0.00 3.01
4496 4948 9.515020 GAAAATTCAACAATTCAGACAGTACAA 57.485 29.630 0.00 0.00 30.37 2.41
4580 5032 6.688385 CGAATGTTACAAGATTAGTTGCATGG 59.312 38.462 0.00 0.00 0.00 3.66
4581 5033 7.243487 ACGAATGTTACAAGATTAGTTGCATG 58.757 34.615 0.00 0.00 26.19 4.06
4582 5034 7.377766 ACGAATGTTACAAGATTAGTTGCAT 57.622 32.000 0.00 0.00 26.19 3.96
4590 5042 6.349300 AGGATGCTACGAATGTTACAAGATT 58.651 36.000 0.00 0.00 0.00 2.40
4605 5057 0.179034 CAGGGCCTTGAGGATGCTAC 60.179 60.000 9.80 0.00 37.39 3.58
4641 5093 2.758423 AGGTTTCTGCAAACGAAAAGGT 59.242 40.909 1.55 0.00 42.66 3.50
4643 5095 4.027572 TCAGGTTTCTGCAAACGAAAAG 57.972 40.909 1.55 0.00 42.66 2.27
4644 5096 3.181491 CCTCAGGTTTCTGCAAACGAAAA 60.181 43.478 1.55 0.00 42.66 2.29
4675 5127 2.333014 GTCGAGAAGCTTCCACTCTTG 58.667 52.381 22.81 8.01 0.00 3.02
4686 5138 1.410737 TTATGCACGCGTCGAGAAGC 61.411 55.000 9.86 9.80 0.00 3.86
4707 5159 1.661463 ATCAGAGCCACTCCTTTGGA 58.339 50.000 0.00 0.00 39.24 3.53
4722 5174 5.471456 AGAACAAACAACCTCAGCTAATCAG 59.529 40.000 0.00 0.00 0.00 2.90
4765 5217 1.896465 AGGCTACACAGAGTGAGGAAC 59.104 52.381 3.88 0.00 36.96 3.62
4768 5220 1.895798 TCAAGGCTACACAGAGTGAGG 59.104 52.381 3.88 0.00 36.96 3.86
4776 5228 1.204146 GGGGATCTCAAGGCTACACA 58.796 55.000 0.00 0.00 0.00 3.72
4777 5229 1.139853 CTGGGGATCTCAAGGCTACAC 59.860 57.143 0.00 0.00 0.00 2.90
4792 5244 0.394352 GGAACTACACATGGCTGGGG 60.394 60.000 0.00 0.00 0.00 4.96
4795 5247 4.853924 AAAAAGGAACTACACATGGCTG 57.146 40.909 0.00 0.00 38.49 4.85
4821 5273 8.032952 TCATGTGCTTATCAAAAACTCTACAG 57.967 34.615 0.00 0.00 0.00 2.74
4922 5377 0.179004 AGGACAATTCCAACCGCACA 60.179 50.000 0.00 0.00 45.72 4.57
4927 5382 1.546029 GAGGCAAGGACAATTCCAACC 59.454 52.381 0.00 0.00 45.72 3.77
4939 5394 1.280457 AGAGTACCAAGGAGGCAAGG 58.720 55.000 0.00 0.00 43.14 3.61
4940 5395 3.077359 CAAAGAGTACCAAGGAGGCAAG 58.923 50.000 0.00 0.00 43.14 4.01
4941 5396 2.441750 ACAAAGAGTACCAAGGAGGCAA 59.558 45.455 0.00 0.00 43.14 4.52
4942 5397 2.054799 ACAAAGAGTACCAAGGAGGCA 58.945 47.619 0.00 0.00 43.14 4.75
4943 5398 2.861147 ACAAAGAGTACCAAGGAGGC 57.139 50.000 0.00 0.00 43.14 4.70
4997 5458 9.664332 ATTGATGAATGGCTCTAGTAATATCAC 57.336 33.333 0.00 0.00 0.00 3.06
5013 5474 5.865552 GGTTTGGACACAAGATTGATGAATG 59.134 40.000 0.00 0.00 37.97 2.67
5018 5479 3.750371 TCGGTTTGGACACAAGATTGAT 58.250 40.909 0.00 0.00 37.97 2.57
5085 5546 7.053498 TCCAGATTATCCATCACGAAAAATGA 58.947 34.615 0.00 0.00 33.75 2.57
5094 5556 4.617995 CGAGCTCTCCAGATTATCCATCAC 60.618 50.000 12.85 0.00 33.75 3.06
5111 5573 2.012673 ACAATTGATCCTTGCGAGCTC 58.987 47.619 13.59 2.73 0.00 4.09
5117 5579 3.367703 CCTGTTGGACAATTGATCCTTGC 60.368 47.826 13.59 9.73 37.13 4.01
5197 5670 2.520904 GCGCATCTTCACTCGGCTC 61.521 63.158 0.30 0.00 0.00 4.70
5204 5677 0.725784 CGTTTGTGGCGCATCTTCAC 60.726 55.000 10.83 8.39 0.00 3.18
5210 5683 0.317770 CTTTCACGTTTGTGGCGCAT 60.318 50.000 10.83 0.00 46.42 4.73
5211 5684 1.063327 CTTTCACGTTTGTGGCGCA 59.937 52.632 10.83 0.00 46.42 6.09
5212 5685 0.928451 GACTTTCACGTTTGTGGCGC 60.928 55.000 0.00 0.00 46.42 6.53
5214 5687 2.844122 AAGACTTTCACGTTTGTGGC 57.156 45.000 0.00 0.00 46.42 5.01
5236 5709 2.012673 GAAGCGATGCTGATGAACCTT 58.987 47.619 0.00 0.00 39.62 3.50
5241 5714 2.904697 ATCAGAAGCGATGCTGATGA 57.095 45.000 23.25 0.00 46.86 2.92
5298 5775 3.957497 GGACACTGATCTACTGGATGAGT 59.043 47.826 0.00 0.00 46.92 3.41
5307 5784 3.764434 TGAAGGACTGGACACTGATCTAC 59.236 47.826 0.00 0.00 0.00 2.59
5317 5794 1.003233 GCTGGGTGAAGGACTGGAC 60.003 63.158 0.00 0.00 0.00 4.02
5325 5802 3.909662 CCGATTGGCTGGGTGAAG 58.090 61.111 0.00 0.00 0.00 3.02
5335 5812 4.536687 GCTTTCGCGGCCGATTGG 62.537 66.667 33.48 14.68 43.97 3.16
5354 5831 4.842091 CTTGAGCGCGCCATTGGC 62.842 66.667 30.33 18.10 46.75 4.52
5355 5832 4.842091 GCTTGAGCGCGCCATTGG 62.842 66.667 30.33 15.51 0.00 3.16
5366 5843 2.496871 AGTGGAGATCAGACAGCTTGAG 59.503 50.000 0.00 0.00 0.00 3.02
5368 5845 2.619147 CAGTGGAGATCAGACAGCTTG 58.381 52.381 0.00 0.00 0.00 4.01
5373 5892 2.658548 ACGCAGTGGAGATCAGACA 58.341 52.632 0.00 0.00 42.51 3.41
5405 5924 1.238439 CTCATGTTCCAAACGGCTGT 58.762 50.000 0.00 0.00 0.00 4.40
5473 5995 4.640647 AGTTGGGTTCAGTTTCAGAGAAAC 59.359 41.667 13.24 13.24 0.00 2.78
5514 6036 1.123861 TGCAGAGAGGGTTGCAGAGT 61.124 55.000 0.00 0.00 44.72 3.24
5537 6082 2.365901 TGGGTAAGGGGGTAGCCG 60.366 66.667 4.56 0.00 43.35 5.52
5541 6086 0.104567 TGTGTGTGGGTAAGGGGGTA 60.105 55.000 0.00 0.00 0.00 3.69
5613 6161 3.864983 TTCGCACCTCCCCTTCCCT 62.865 63.158 0.00 0.00 0.00 4.20
5616 6164 0.036306 TTTCTTCGCACCTCCCCTTC 59.964 55.000 0.00 0.00 0.00 3.46
5626 6174 4.891627 TCATGTCAAACTTTTCTTCGCA 57.108 36.364 0.00 0.00 0.00 5.10
5670 6218 8.979574 CAGAGACAAAGTCTTCGTAGTAAAATT 58.020 33.333 0.70 0.00 43.53 1.82
5671 6219 7.116519 GCAGAGACAAAGTCTTCGTAGTAAAAT 59.883 37.037 0.70 0.00 43.53 1.82
5672 6220 6.420008 GCAGAGACAAAGTCTTCGTAGTAAAA 59.580 38.462 0.70 0.00 43.53 1.52
5673 6221 5.919141 GCAGAGACAAAGTCTTCGTAGTAAA 59.081 40.000 0.70 0.00 43.53 2.01
5674 6222 5.458891 GCAGAGACAAAGTCTTCGTAGTAA 58.541 41.667 0.70 0.00 43.53 2.24
5675 6223 4.082895 GGCAGAGACAAAGTCTTCGTAGTA 60.083 45.833 0.70 0.00 43.53 1.82
5676 6224 3.305471 GGCAGAGACAAAGTCTTCGTAGT 60.305 47.826 0.70 0.00 43.53 2.73
5677 6225 3.246619 GGCAGAGACAAAGTCTTCGTAG 58.753 50.000 0.70 0.00 43.53 3.51
5678 6226 2.351447 CGGCAGAGACAAAGTCTTCGTA 60.351 50.000 0.70 0.00 43.53 3.43
5679 6227 1.603172 CGGCAGAGACAAAGTCTTCGT 60.603 52.381 0.70 0.00 43.53 3.85
5680 6228 1.063806 CGGCAGAGACAAAGTCTTCG 58.936 55.000 0.70 1.11 43.53 3.79
5681 6229 2.062519 GTCGGCAGAGACAAAGTCTTC 58.937 52.381 0.70 0.00 43.53 2.87
5682 6230 1.270358 GGTCGGCAGAGACAAAGTCTT 60.270 52.381 0.70 0.00 43.53 3.01
5683 6231 0.318762 GGTCGGCAGAGACAAAGTCT 59.681 55.000 0.00 0.00 46.42 3.24
5684 6232 0.033504 TGGTCGGCAGAGACAAAGTC 59.966 55.000 8.17 0.00 42.62 3.01
5685 6233 0.468226 TTGGTCGGCAGAGACAAAGT 59.532 50.000 8.17 0.00 42.62 2.66
5686 6234 0.868406 GTTGGTCGGCAGAGACAAAG 59.132 55.000 5.67 0.00 42.62 2.77
5687 6235 0.179234 TGTTGGTCGGCAGAGACAAA 59.821 50.000 5.67 0.00 42.62 2.83
5688 6236 0.531974 GTGTTGGTCGGCAGAGACAA 60.532 55.000 8.17 4.58 42.62 3.18
5689 6237 1.069090 GTGTTGGTCGGCAGAGACA 59.931 57.895 8.17 1.99 42.62 3.41
5690 6238 0.946221 CAGTGTTGGTCGGCAGAGAC 60.946 60.000 0.00 0.00 40.25 3.36
5691 6239 1.367471 CAGTGTTGGTCGGCAGAGA 59.633 57.895 0.00 0.00 0.00 3.10
5692 6240 2.320587 GCAGTGTTGGTCGGCAGAG 61.321 63.158 0.00 0.00 0.00 3.35
5693 6241 2.280797 GCAGTGTTGGTCGGCAGA 60.281 61.111 0.00 0.00 0.00 4.26
5694 6242 1.845809 GAAGCAGTGTTGGTCGGCAG 61.846 60.000 0.00 0.00 32.95 4.85
5695 6243 1.891919 GAAGCAGTGTTGGTCGGCA 60.892 57.895 0.00 0.00 32.95 5.69
5696 6244 0.320421 TAGAAGCAGTGTTGGTCGGC 60.320 55.000 0.00 0.00 32.95 5.54
5697 6245 1.673033 CCTAGAAGCAGTGTTGGTCGG 60.673 57.143 0.00 0.00 32.95 4.79
5698 6246 1.673033 CCCTAGAAGCAGTGTTGGTCG 60.673 57.143 0.00 0.00 32.95 4.79
5699 6247 1.348036 ACCCTAGAAGCAGTGTTGGTC 59.652 52.381 0.00 0.00 32.95 4.02
5700 6248 1.072331 CACCCTAGAAGCAGTGTTGGT 59.928 52.381 0.00 0.00 36.38 3.67
5701 6249 1.347707 TCACCCTAGAAGCAGTGTTGG 59.652 52.381 0.00 0.00 0.00 3.77
5702 6250 2.417719 GTCACCCTAGAAGCAGTGTTG 58.582 52.381 0.00 0.00 0.00 3.33
5703 6251 1.348036 GGTCACCCTAGAAGCAGTGTT 59.652 52.381 0.00 0.00 0.00 3.32
5704 6252 0.977395 GGTCACCCTAGAAGCAGTGT 59.023 55.000 0.00 0.00 0.00 3.55
5705 6253 0.976641 TGGTCACCCTAGAAGCAGTG 59.023 55.000 0.00 0.00 0.00 3.66
5706 6254 0.977395 GTGGTCACCCTAGAAGCAGT 59.023 55.000 0.00 0.00 0.00 4.40
5707 6255 3.842869 GTGGTCACCCTAGAAGCAG 57.157 57.895 0.00 0.00 0.00 4.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.