Multiple sequence alignment - TraesCS2A01G426100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G426100 chr2A 100.000 4887 0 0 1 4887 679880786 679885672 0.000000e+00 9025.0
1 TraesCS2A01G426100 chr2A 94.792 96 1 3 551 643 756909888 756909794 3.940000e-31 147.0
2 TraesCS2A01G426100 chr2B 90.442 2783 176 44 1898 4641 639216342 639219073 0.000000e+00 3583.0
3 TraesCS2A01G426100 chr2B 88.353 1494 129 21 744 2211 639214866 639216340 0.000000e+00 1753.0
4 TraesCS2A01G426100 chr2B 94.118 238 14 0 4650 4887 639219035 639219272 3.600000e-96 363.0
5 TraesCS2A01G426100 chr2B 91.391 151 3 7 545 689 639214369 639214515 1.070000e-46 198.0
6 TraesCS2A01G426100 chr2B 97.753 89 1 1 549 636 76882505 76882593 8.470000e-33 152.0
7 TraesCS2A01G426100 chr2B 96.629 89 1 1 551 637 767472317 767472405 3.940000e-31 147.0
8 TraesCS2A01G426100 chr2B 91.228 57 4 1 4179 4234 639218540 639218596 5.250000e-10 76.8
9 TraesCS2A01G426100 chr2D 92.707 1851 88 19 2808 4641 537214936 537216756 0.000000e+00 2627.0
10 TraesCS2A01G426100 chr2D 95.619 913 32 3 1845 2757 537214037 537214941 0.000000e+00 1458.0
11 TraesCS2A01G426100 chr2D 83.400 1494 164 52 808 2261 537212564 537214013 0.000000e+00 1308.0
12 TraesCS2A01G426100 chr2D 89.344 244 17 3 4644 4887 537216712 537216946 1.030000e-76 298.0
13 TraesCS2A01G426100 chr2D 81.844 358 37 17 139 484 537211687 537212028 4.820000e-70 276.0
14 TraesCS2A01G426100 chr2D 89.157 166 12 6 483 646 537212125 537212286 8.290000e-48 202.0
15 TraesCS2A01G426100 chr6A 97.260 146 4 0 1 146 73648292 73648437 1.050000e-61 248.0
16 TraesCS2A01G426100 chrUn 94.558 147 8 0 1 147 71387128 71386982 1.370000e-55 228.0
17 TraesCS2A01G426100 chr1A 94.521 146 8 0 1 146 13173879 13174024 4.920000e-55 226.0
18 TraesCS2A01G426100 chr6B 93.151 146 10 0 1 146 334467954 334468099 1.070000e-51 215.0
19 TraesCS2A01G426100 chr6B 94.681 94 2 3 541 632 41858415 41858507 5.100000e-30 143.0
20 TraesCS2A01G426100 chr7A 90.850 153 14 0 1 153 718371983 718371831 6.410000e-49 206.0
21 TraesCS2A01G426100 chr7A 94.118 102 1 5 545 641 292417 292316 3.050000e-32 150.0
22 TraesCS2A01G426100 chr7A 96.629 89 1 1 549 635 299734 299646 3.940000e-31 147.0
23 TraesCS2A01G426100 chr7B 91.781 146 10 2 1 145 12778832 12778976 8.290000e-48 202.0
24 TraesCS2A01G426100 chr3B 89.041 146 13 2 1 146 744390844 744390986 1.400000e-40 178.0
25 TraesCS2A01G426100 chr5A 94.505 91 3 1 549 639 90607120 90607208 6.600000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G426100 chr2A 679880786 679885672 4886 False 9025.000000 9025 100.0000 1 4887 1 chr2A.!!$F1 4886
1 TraesCS2A01G426100 chr2B 639214369 639219272 4903 False 1194.760000 3583 91.1064 545 4887 5 chr2B.!!$F3 4342
2 TraesCS2A01G426100 chr2D 537211687 537216946 5259 False 1028.166667 2627 88.6785 139 4887 6 chr2D.!!$F1 4748

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
160 161 0.035739 AAAAAGCTGGCTGCCCAATG 59.964 50.000 17.53 5.01 41.58 2.82 F
1153 1606 0.034337 TCGTCCCCGTCTTTTTCCTG 59.966 55.000 0.00 0.00 35.01 3.86 F
1194 1649 0.179200 CGGTACATTGACGCCTTTGC 60.179 55.000 0.00 0.00 0.00 3.68 F
1469 1936 0.546122 TGCCTAGGGTTTGATGCGAT 59.454 50.000 11.72 0.00 0.00 4.58 F
1598 2067 0.804364 TTCACGACAGGATGCAATGC 59.196 50.000 0.00 0.00 42.53 3.56 F
1812 2281 1.198637 GTGCTCTGTCCTTTGTCATGC 59.801 52.381 0.00 0.00 0.00 4.06 F
3259 4480 1.330521 CCGATTAACCAATGGTCAGCG 59.669 52.381 4.95 10.29 33.12 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1157 1610 0.034059 CGAATCCCCCTTCCTCATCG 59.966 60.000 0.0 0.0 0.00 3.84 R
3105 4326 0.035881 TTCTCAGCCAACAGCCTCAG 59.964 55.000 0.0 0.0 45.47 3.35 R
3167 4388 1.415659 CAAGGATGGTCTAGGGCTCTG 59.584 57.143 0.0 0.0 0.00 3.35 R
3346 4567 0.108585 AACTTCACCACACGAGCCAT 59.891 50.000 0.0 0.0 0.00 4.40 R
3528 4758 3.131223 ACATGGTGATAGGACAGAAGACG 59.869 47.826 0.0 0.0 0.00 4.18 R
3754 4985 2.425143 TCTGAACCTCCCATTCATGC 57.575 50.000 0.0 0.0 35.57 4.06 R
4644 5889 0.034756 TGGTTCATGACAGTCCCGTG 59.965 55.000 0.0 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.869481 GGCAAACTTTGAGGCCCA 58.131 55.556 0.00 0.00 40.55 5.36
19 20 2.365410 GGCAAACTTTGAGGCCCAT 58.635 52.632 0.00 0.00 40.55 4.00
20 21 0.037046 GGCAAACTTTGAGGCCCATG 60.037 55.000 0.00 0.00 40.55 3.66
21 22 0.671472 GCAAACTTTGAGGCCCATGC 60.671 55.000 0.00 0.00 0.00 4.06
43 44 2.359230 GCAAAGGCAGCCTCGTCT 60.359 61.111 16.53 0.00 40.72 4.18
44 45 2.394563 GCAAAGGCAGCCTCGTCTC 61.395 63.158 16.53 0.00 40.72 3.36
45 46 1.294780 CAAAGGCAGCCTCGTCTCT 59.705 57.895 16.53 0.00 30.89 3.10
46 47 0.739112 CAAAGGCAGCCTCGTCTCTC 60.739 60.000 16.53 0.00 30.89 3.20
47 48 1.893919 AAAGGCAGCCTCGTCTCTCC 61.894 60.000 16.53 0.00 30.89 3.71
48 49 3.844090 GGCAGCCTCGTCTCTCCC 61.844 72.222 3.29 0.00 0.00 4.30
49 50 2.757917 GCAGCCTCGTCTCTCCCT 60.758 66.667 0.00 0.00 0.00 4.20
50 51 1.454111 GCAGCCTCGTCTCTCCCTA 60.454 63.158 0.00 0.00 0.00 3.53
51 52 1.730451 GCAGCCTCGTCTCTCCCTAC 61.730 65.000 0.00 0.00 0.00 3.18
52 53 1.153127 AGCCTCGTCTCTCCCTACG 60.153 63.158 0.00 0.00 40.40 3.51
53 54 2.188161 GCCTCGTCTCTCCCTACGG 61.188 68.421 0.00 0.00 39.52 4.02
54 55 1.526455 CCTCGTCTCTCCCTACGGG 60.526 68.421 0.00 0.00 46.11 5.28
55 56 1.224039 CTCGTCTCTCCCTACGGGT 59.776 63.158 0.00 0.00 44.74 5.28
56 57 0.814812 CTCGTCTCTCCCTACGGGTC 60.815 65.000 0.00 0.00 44.74 4.46
57 58 2.178890 CGTCTCTCCCTACGGGTCG 61.179 68.421 0.00 0.00 44.74 4.79
58 59 2.124403 TCTCTCCCTACGGGTCGC 60.124 66.667 0.00 0.00 44.74 5.19
59 60 3.217743 CTCTCCCTACGGGTCGCC 61.218 72.222 0.00 0.00 44.74 5.54
60 61 4.051167 TCTCCCTACGGGTCGCCA 62.051 66.667 0.00 0.00 44.74 5.69
61 62 2.838225 CTCCCTACGGGTCGCCAT 60.838 66.667 0.00 0.00 44.74 4.40
62 63 2.836360 TCCCTACGGGTCGCCATC 60.836 66.667 0.00 0.00 44.74 3.51
63 64 2.838225 CCCTACGGGTCGCCATCT 60.838 66.667 0.00 0.00 38.25 2.90
64 65 2.417516 CCTACGGGTCGCCATCTG 59.582 66.667 0.00 0.00 0.00 2.90
65 66 2.423898 CCTACGGGTCGCCATCTGT 61.424 63.158 0.00 0.00 0.00 3.41
66 67 1.226974 CTACGGGTCGCCATCTGTG 60.227 63.158 0.00 0.00 0.00 3.66
76 77 3.788672 CCATCTGTGGCTAGGGAAC 57.211 57.895 0.00 0.00 39.01 3.62
77 78 0.181350 CCATCTGTGGCTAGGGAACC 59.819 60.000 0.00 0.00 44.99 3.62
78 79 3.203970 CCATCTGTGGCTAGGGAACCC 62.204 61.905 0.94 0.94 45.58 4.11
90 91 3.800826 GGAACCCGCCAGACATTAT 57.199 52.632 0.00 0.00 0.00 1.28
91 92 2.922740 GGAACCCGCCAGACATTATA 57.077 50.000 0.00 0.00 0.00 0.98
92 93 3.418684 GGAACCCGCCAGACATTATAT 57.581 47.619 0.00 0.00 0.00 0.86
93 94 3.074412 GGAACCCGCCAGACATTATATG 58.926 50.000 0.00 0.00 0.00 1.78
95 96 4.262721 GGAACCCGCCAGACATTATATGTA 60.263 45.833 0.00 0.00 45.03 2.29
96 97 5.488341 GAACCCGCCAGACATTATATGTAT 58.512 41.667 0.00 0.00 45.03 2.29
97 98 5.499004 ACCCGCCAGACATTATATGTATT 57.501 39.130 0.00 0.00 45.03 1.89
98 99 5.488341 ACCCGCCAGACATTATATGTATTC 58.512 41.667 0.00 0.00 45.03 1.75
99 100 4.876107 CCCGCCAGACATTATATGTATTCC 59.124 45.833 0.00 0.00 45.03 3.01
100 101 5.338381 CCCGCCAGACATTATATGTATTCCT 60.338 44.000 0.00 0.00 45.03 3.36
101 102 5.812642 CCGCCAGACATTATATGTATTCCTC 59.187 44.000 0.00 0.00 45.03 3.71
102 103 5.812642 CGCCAGACATTATATGTATTCCTCC 59.187 44.000 0.00 0.00 45.03 4.30
103 104 5.812642 GCCAGACATTATATGTATTCCTCCG 59.187 44.000 0.00 0.00 45.03 4.63
104 105 6.341316 CCAGACATTATATGTATTCCTCCGG 58.659 44.000 0.00 0.00 45.03 5.14
105 106 6.070767 CCAGACATTATATGTATTCCTCCGGT 60.071 42.308 0.00 0.00 45.03 5.28
106 107 7.386851 CAGACATTATATGTATTCCTCCGGTT 58.613 38.462 0.00 0.00 45.03 4.44
107 108 7.878127 CAGACATTATATGTATTCCTCCGGTTT 59.122 37.037 0.00 0.00 45.03 3.27
108 109 8.437575 AGACATTATATGTATTCCTCCGGTTTT 58.562 33.333 0.00 0.00 45.03 2.43
109 110 9.715121 GACATTATATGTATTCCTCCGGTTTTA 57.285 33.333 0.00 0.00 45.03 1.52
110 111 9.720769 ACATTATATGTATTCCTCCGGTTTTAG 57.279 33.333 0.00 0.00 42.78 1.85
111 112 8.665685 CATTATATGTATTCCTCCGGTTTTAGC 58.334 37.037 0.00 0.00 0.00 3.09
112 113 4.772886 ATGTATTCCTCCGGTTTTAGCT 57.227 40.909 0.00 0.00 0.00 3.32
113 114 3.869065 TGTATTCCTCCGGTTTTAGCTG 58.131 45.455 0.00 0.00 0.00 4.24
114 115 3.516300 TGTATTCCTCCGGTTTTAGCTGA 59.484 43.478 0.00 0.00 0.00 4.26
115 116 3.933861 ATTCCTCCGGTTTTAGCTGAT 57.066 42.857 0.00 0.00 0.00 2.90
116 117 2.981859 TCCTCCGGTTTTAGCTGATC 57.018 50.000 0.00 0.00 0.00 2.92
117 118 2.184533 TCCTCCGGTTTTAGCTGATCA 58.815 47.619 0.00 0.00 0.00 2.92
118 119 2.569853 TCCTCCGGTTTTAGCTGATCAA 59.430 45.455 0.00 0.00 0.00 2.57
119 120 3.199946 TCCTCCGGTTTTAGCTGATCAAT 59.800 43.478 0.00 0.00 0.00 2.57
120 121 4.407621 TCCTCCGGTTTTAGCTGATCAATA 59.592 41.667 0.00 0.00 0.00 1.90
121 122 5.104693 TCCTCCGGTTTTAGCTGATCAATAA 60.105 40.000 0.00 0.00 0.00 1.40
122 123 5.588648 CCTCCGGTTTTAGCTGATCAATAAA 59.411 40.000 0.00 2.92 0.00 1.40
123 124 6.094881 CCTCCGGTTTTAGCTGATCAATAAAA 59.905 38.462 16.15 16.15 0.00 1.52
124 125 7.201821 CCTCCGGTTTTAGCTGATCAATAAAAT 60.202 37.037 20.20 0.00 32.68 1.82
125 126 7.703328 TCCGGTTTTAGCTGATCAATAAAATC 58.297 34.615 20.20 19.09 32.68 2.17
126 127 6.918022 CCGGTTTTAGCTGATCAATAAAATCC 59.082 38.462 20.20 19.67 32.68 3.01
127 128 6.918022 CGGTTTTAGCTGATCAATAAAATCCC 59.082 38.462 20.20 17.32 32.68 3.85
128 129 7.201821 CGGTTTTAGCTGATCAATAAAATCCCT 60.202 37.037 20.20 2.26 32.68 4.20
129 130 9.131791 GGTTTTAGCTGATCAATAAAATCCCTA 57.868 33.333 20.20 3.71 32.68 3.53
131 132 9.920946 TTTTAGCTGATCAATAAAATCCCTAGT 57.079 29.630 16.15 0.00 0.00 2.57
132 133 9.920946 TTTAGCTGATCAATAAAATCCCTAGTT 57.079 29.630 0.00 0.00 0.00 2.24
134 135 8.910351 AGCTGATCAATAAAATCCCTAGTTAC 57.090 34.615 0.00 0.00 0.00 2.50
135 136 8.494433 AGCTGATCAATAAAATCCCTAGTTACA 58.506 33.333 0.00 0.00 0.00 2.41
136 137 8.560374 GCTGATCAATAAAATCCCTAGTTACAC 58.440 37.037 0.00 0.00 0.00 2.90
137 138 8.974060 TGATCAATAAAATCCCTAGTTACACC 57.026 34.615 0.00 0.00 0.00 4.16
138 139 8.778059 TGATCAATAAAATCCCTAGTTACACCT 58.222 33.333 0.00 0.00 0.00 4.00
139 140 9.274206 GATCAATAAAATCCCTAGTTACACCTC 57.726 37.037 0.00 0.00 0.00 3.85
140 141 8.153221 TCAATAAAATCCCTAGTTACACCTCA 57.847 34.615 0.00 0.00 0.00 3.86
141 142 8.607713 TCAATAAAATCCCTAGTTACACCTCAA 58.392 33.333 0.00 0.00 0.00 3.02
142 143 9.238368 CAATAAAATCCCTAGTTACACCTCAAA 57.762 33.333 0.00 0.00 0.00 2.69
143 144 9.816787 AATAAAATCCCTAGTTACACCTCAAAA 57.183 29.630 0.00 0.00 0.00 2.44
159 160 2.455497 AAAAAGCTGGCTGCCCAAT 58.545 47.368 17.53 0.00 41.58 3.16
160 161 0.035739 AAAAAGCTGGCTGCCCAATG 59.964 50.000 17.53 5.01 41.58 2.82
174 175 4.288398 TGCCCAATGTTACATGGATCAAT 58.712 39.130 12.94 0.00 39.12 2.57
175 176 4.341806 TGCCCAATGTTACATGGATCAATC 59.658 41.667 12.94 0.00 39.12 2.67
183 184 6.820335 TGTTACATGGATCAATCTAGAGTGG 58.180 40.000 19.36 5.46 0.00 4.00
186 187 2.050144 TGGATCAATCTAGAGTGGCCC 58.950 52.381 19.36 18.83 0.00 5.80
195 196 2.009774 CTAGAGTGGCCCAAAATGACG 58.990 52.381 0.00 0.00 0.00 4.35
197 198 2.212900 GAGTGGCCCAAAATGACGCC 62.213 60.000 0.00 0.00 41.99 5.68
199 200 3.370231 GGCCCAAAATGACGCCGT 61.370 61.111 0.00 0.00 0.00 5.68
234 235 1.512156 AAGGGCCGTTACAGCGTTTG 61.512 55.000 9.42 0.00 0.00 2.93
240 241 2.222729 GCCGTTACAGCGTTTGTATCTG 60.223 50.000 3.35 0.00 41.72 2.90
247 248 5.584253 ACAGCGTTTGTATCTGTCTATCT 57.416 39.130 0.00 0.00 38.56 1.98
250 251 7.544622 ACAGCGTTTGTATCTGTCTATCTTAA 58.455 34.615 0.00 0.00 38.56 1.85
255 256 9.011407 CGTTTGTATCTGTCTATCTTAAGTGAC 57.989 37.037 1.63 9.97 0.00 3.67
267 268 4.969196 AGTGACGCGTGGGTGCAG 62.969 66.667 20.70 0.00 34.15 4.41
274 275 3.653009 CGTGGGTGCAGTGCAGTG 61.653 66.667 20.42 17.56 40.08 3.66
275 276 3.289834 GTGGGTGCAGTGCAGTGG 61.290 66.667 20.42 5.23 40.08 4.00
276 277 3.487626 TGGGTGCAGTGCAGTGGA 61.488 61.111 20.42 17.90 40.08 4.02
280 281 1.303799 GGTGCAGTGCAGTGGATGAG 61.304 60.000 20.42 0.00 40.08 2.90
288 289 1.145598 CAGTGGATGAGAGCGGCAT 59.854 57.895 1.45 0.00 0.00 4.40
306 307 2.848608 TGGCAACAGGTAGAGTGGT 58.151 52.632 0.00 0.00 46.17 4.16
307 308 1.136828 TGGCAACAGGTAGAGTGGTT 58.863 50.000 0.00 0.00 46.17 3.67
308 309 1.202758 TGGCAACAGGTAGAGTGGTTG 60.203 52.381 0.00 0.00 46.17 3.77
309 310 1.071699 GGCAACAGGTAGAGTGGTTGA 59.928 52.381 7.48 0.00 42.34 3.18
345 346 1.671379 GTTCTGAACCAGGCCGGAC 60.671 63.158 18.74 0.00 38.63 4.79
346 347 2.890766 TTCTGAACCAGGCCGGACC 61.891 63.158 18.74 4.96 38.63 4.46
347 348 4.760047 CTGAACCAGGCCGGACCG 62.760 72.222 18.74 6.99 46.52 4.79
364 365 0.944311 CCGGAGACCACTCAACAACG 60.944 60.000 0.00 0.00 44.22 4.10
367 368 0.582005 GAGACCACTCAACAACGCAC 59.418 55.000 0.00 0.00 42.21 5.34
379 380 1.953686 ACAACGCACCATTTTAGCTGT 59.046 42.857 0.00 0.00 0.00 4.40
385 386 2.095059 GCACCATTTTAGCTGTCAGTGG 60.095 50.000 0.00 2.65 0.00 4.00
387 388 1.474077 CCATTTTAGCTGTCAGTGGCC 59.526 52.381 0.00 0.00 0.00 5.36
390 391 2.390306 TTTAGCTGTCAGTGGCCGCA 62.390 55.000 20.59 0.00 0.00 5.69
393 394 2.740055 CTGTCAGTGGCCGCAGTC 60.740 66.667 20.59 9.16 0.00 3.51
401 413 1.080093 TGGCCGCAGTCGAAACTAG 60.080 57.895 0.00 0.00 38.10 2.57
405 417 1.669211 GCCGCAGTCGAAACTAGAGTT 60.669 52.381 0.00 0.00 40.50 3.01
407 419 2.351447 CCGCAGTCGAAACTAGAGTTGA 60.351 50.000 0.00 0.00 38.44 3.18
423 435 4.063689 GAGTTGAGTATGGATGGATGCAG 58.936 47.826 0.00 0.00 0.00 4.41
424 436 2.551459 GTTGAGTATGGATGGATGCAGC 59.449 50.000 0.00 0.00 0.00 5.25
425 437 1.270465 TGAGTATGGATGGATGCAGCG 60.270 52.381 0.00 0.00 0.00 5.18
427 439 1.970640 AGTATGGATGGATGCAGCGTA 59.029 47.619 0.00 0.00 0.00 4.42
479 491 2.323968 ATGTGCGGTATGTGTGCATA 57.676 45.000 0.00 0.00 41.23 3.14
488 598 1.755179 ATGTGTGCATAGGTTCCAGC 58.245 50.000 0.00 0.00 32.73 4.85
506 616 2.892373 GCAATAAGCTTGTGCACGTA 57.108 45.000 24.31 1.48 42.74 3.57
524 634 4.002267 CGTACCGTACACGTAGATGAAA 57.998 45.455 9.34 0.00 37.74 2.69
525 635 4.402583 CGTACCGTACACGTAGATGAAAA 58.597 43.478 9.34 0.00 37.74 2.29
526 636 4.260656 CGTACCGTACACGTAGATGAAAAC 59.739 45.833 9.34 0.00 37.74 2.43
530 640 4.433805 CCGTACACGTAGATGAAAACTTGC 60.434 45.833 0.58 0.00 37.74 4.01
625 735 3.699134 GATTCCCCGCACCTCCACC 62.699 68.421 0.00 0.00 0.00 4.61
626 736 4.974438 TTCCCCGCACCTCCACCT 62.974 66.667 0.00 0.00 0.00 4.00
690 1135 8.894409 TTGCTAACTTGAATAACAAATCATCG 57.106 30.769 0.00 0.00 38.08 3.84
691 1136 8.039603 TGCTAACTTGAATAACAAATCATCGT 57.960 30.769 0.00 0.00 38.08 3.73
692 1137 9.157104 TGCTAACTTGAATAACAAATCATCGTA 57.843 29.630 0.00 0.00 38.08 3.43
693 1138 9.422196 GCTAACTTGAATAACAAATCATCGTAC 57.578 33.333 0.00 0.00 38.08 3.67
694 1139 9.916397 CTAACTTGAATAACAAATCATCGTACC 57.084 33.333 0.00 0.00 38.08 3.34
695 1140 7.316544 ACTTGAATAACAAATCATCGTACCC 57.683 36.000 0.00 0.00 38.08 3.69
696 1141 7.110155 ACTTGAATAACAAATCATCGTACCCT 58.890 34.615 0.00 0.00 38.08 4.34
697 1142 7.610305 ACTTGAATAACAAATCATCGTACCCTT 59.390 33.333 0.00 0.00 38.08 3.95
698 1143 7.931578 TGAATAACAAATCATCGTACCCTTT 57.068 32.000 0.00 0.00 0.00 3.11
699 1144 8.343168 TGAATAACAAATCATCGTACCCTTTT 57.657 30.769 0.00 0.00 0.00 2.27
700 1145 8.798402 TGAATAACAAATCATCGTACCCTTTTT 58.202 29.630 0.00 0.00 0.00 1.94
741 1186 0.548510 GAGAGGGTTCCCATCCCAAG 59.451 60.000 10.73 0.00 46.82 3.61
742 1187 0.921256 AGAGGGTTCCCATCCCAAGG 60.921 60.000 10.73 0.00 46.82 3.61
793 1239 0.179119 AGCGCAACGGTACTCCATAC 60.179 55.000 11.47 0.00 35.27 2.39
794 1240 1.477030 GCGCAACGGTACTCCATACG 61.477 60.000 0.30 0.00 34.22 3.06
820 1266 1.676014 CGTTCTTCCCATCCACCTCAC 60.676 57.143 0.00 0.00 0.00 3.51
847 1293 1.081094 CACGACCGTTAATTCCCCAC 58.919 55.000 0.00 0.00 0.00 4.61
860 1306 1.982395 CCCCACTCTACGGCTCACA 60.982 63.158 0.00 0.00 0.00 3.58
918 1364 1.335324 CGCAAGAAAGAAAGCCCACAG 60.335 52.381 0.00 0.00 43.02 3.66
922 1368 2.587522 AGAAAGAAAGCCCACAGGAAC 58.412 47.619 0.00 0.00 33.47 3.62
946 1392 2.114411 GGCCGAGGAAAACCACCA 59.886 61.111 0.00 0.00 0.00 4.17
958 1404 1.637724 AACCACCAGGACCAACGGAA 61.638 55.000 0.00 0.00 38.69 4.30
959 1405 1.302511 CCACCAGGACCAACGGAAG 60.303 63.158 0.00 0.00 36.89 3.46
960 1406 1.752198 CACCAGGACCAACGGAAGA 59.248 57.895 0.00 0.00 0.00 2.87
962 1408 1.376037 CCAGGACCAACGGAAGAGC 60.376 63.158 0.00 0.00 0.00 4.09
981 1433 0.036294 CGAAGAGGGGAACTGGGAAC 60.036 60.000 0.00 0.00 0.00 3.62
1152 1605 0.760572 TTCGTCCCCGTCTTTTTCCT 59.239 50.000 0.00 0.00 35.01 3.36
1153 1606 0.034337 TCGTCCCCGTCTTTTTCCTG 59.966 55.000 0.00 0.00 35.01 3.86
1156 1609 1.302192 CCCCGTCTTTTTCCTGCGA 60.302 57.895 0.00 0.00 0.00 5.10
1157 1610 1.574702 CCCCGTCTTTTTCCTGCGAC 61.575 60.000 0.00 0.00 0.00 5.19
1189 1644 0.935196 GGATTCGGTACATTGACGCC 59.065 55.000 0.00 0.00 0.00 5.68
1194 1649 0.179200 CGGTACATTGACGCCTTTGC 60.179 55.000 0.00 0.00 0.00 3.68
1252 1707 2.568090 GTGGATGCGCAGGGTTTG 59.432 61.111 18.32 0.00 0.00 2.93
1264 1729 3.653344 GCAGGGTTTGTTTGGAGAATTC 58.347 45.455 0.00 0.00 0.00 2.17
1268 1733 2.888414 GGTTTGTTTGGAGAATTCGGGA 59.112 45.455 0.00 0.00 0.00 5.14
1296 1761 2.124024 GCGGGGGATGGGGTTTAC 60.124 66.667 0.00 0.00 0.00 2.01
1346 1812 6.832804 AGTTTTTCTTTTCGATTCGAGGATC 58.167 36.000 8.98 0.00 37.14 3.36
1353 1819 3.386768 TCGATTCGAGGATCCATTTCC 57.613 47.619 15.82 0.00 35.90 3.13
1388 1854 0.631212 GGTTTGGGAGATGGATGGGT 59.369 55.000 0.00 0.00 0.00 4.51
1448 1915 4.278170 TGAAATTTCCCAACTGTACTGCTG 59.722 41.667 15.48 0.00 0.00 4.41
1469 1936 0.546122 TGCCTAGGGTTTGATGCGAT 59.454 50.000 11.72 0.00 0.00 4.58
1524 1991 3.141398 GTTTGCAGTTCTGGAGATGTGA 58.859 45.455 1.97 0.00 0.00 3.58
1566 2034 4.997395 ACAATGTCAACACTGATGTAGGTC 59.003 41.667 0.00 0.00 38.45 3.85
1572 2040 2.180276 ACACTGATGTAGGTCCTGGTC 58.820 52.381 0.00 0.00 37.26 4.02
1578 2047 1.390926 GTAGGTCCTGGTCTGGGGA 59.609 63.158 0.00 0.00 0.00 4.81
1584 2053 1.221840 CCTGGTCTGGGGATTCACG 59.778 63.158 0.00 0.00 0.00 4.35
1585 2054 1.264749 CCTGGTCTGGGGATTCACGA 61.265 60.000 0.00 0.00 0.00 4.35
1593 2062 0.815615 GGGGATTCACGACAGGATGC 60.816 60.000 0.00 0.00 42.53 3.91
1595 2064 1.678728 GGGATTCACGACAGGATGCAA 60.679 52.381 0.00 0.00 42.53 4.08
1598 2067 0.804364 TTCACGACAGGATGCAATGC 59.196 50.000 0.00 0.00 42.53 3.56
1607 2076 3.756933 AGGATGCAATGCTGTGTTTTT 57.243 38.095 6.82 0.00 46.20 1.94
1691 2160 6.294176 CCTCATTTCGTTGATTTCAGGTTCTT 60.294 38.462 0.00 0.00 0.00 2.52
1710 2179 4.642429 TCTTCTCACAAAGTTTCCTAGCC 58.358 43.478 0.00 0.00 0.00 3.93
1725 2194 2.158623 CCTAGCCTGCCACCATCATTTA 60.159 50.000 0.00 0.00 0.00 1.40
1729 2198 2.760092 GCCTGCCACCATCATTTAAGAA 59.240 45.455 0.00 0.00 0.00 2.52
1730 2199 3.385755 GCCTGCCACCATCATTTAAGAAT 59.614 43.478 0.00 0.00 0.00 2.40
1736 2205 5.221244 GCCACCATCATTTAAGAATACACCC 60.221 44.000 0.00 0.00 0.00 4.61
1806 2275 4.376340 AAAAACTGTGCTCTGTCCTTTG 57.624 40.909 0.00 0.00 0.00 2.77
1812 2281 1.198637 GTGCTCTGTCCTTTGTCATGC 59.801 52.381 0.00 0.00 0.00 4.06
1923 2820 5.964958 TGGAGTTTCATCCAATTTGAGAC 57.035 39.130 0.00 0.00 46.45 3.36
1961 2858 4.969484 AGGTGTTTCGTGGAATACTCTTT 58.031 39.130 0.00 0.00 0.00 2.52
1963 2860 5.469084 AGGTGTTTCGTGGAATACTCTTTTC 59.531 40.000 0.00 0.00 0.00 2.29
1971 2868 4.034510 GTGGAATACTCTTTTCAGGATGCG 59.965 45.833 0.00 0.00 34.76 4.73
1977 2874 4.579869 ACTCTTTTCAGGATGCGTGTATT 58.420 39.130 0.00 0.00 34.76 1.89
2000 2897 3.711086 AGCTCTGTATGTATGTTCGCTG 58.289 45.455 0.00 0.00 0.00 5.18
2154 3366 7.334421 CCATTTTGCAAGTGTGTAGTAGACTAT 59.666 37.037 0.00 0.00 31.71 2.12
2155 3367 9.366216 CATTTTGCAAGTGTGTAGTAGACTATA 57.634 33.333 0.00 0.00 31.71 1.31
2242 3455 4.370917 TGCAAGTCTGGAAAGCATTTTTC 58.629 39.130 0.00 0.00 39.27 2.29
2379 3595 2.544267 GGCCATATACGAGTTTGCTGTC 59.456 50.000 0.00 0.00 0.00 3.51
2494 3710 4.454504 ACTTAAGCACATTTTGGTCCTACG 59.545 41.667 1.29 0.00 33.68 3.51
2540 3756 8.487313 TGTAGTCATGCACGTAAATTATCTTT 57.513 30.769 0.00 0.00 0.00 2.52
2733 3949 4.443457 GCATTCTATTCCTCACAGCACCTA 60.443 45.833 0.00 0.00 0.00 3.08
2735 3951 6.519043 GCATTCTATTCCTCACAGCACCTATA 60.519 42.308 0.00 0.00 0.00 1.31
2777 3993 6.330250 AGCAGGACACCCTTGATATAAGTAAT 59.670 38.462 0.00 0.00 42.02 1.89
2917 4137 2.289565 GCGACCTCCTGGATTTTTAGG 58.710 52.381 0.00 0.00 37.04 2.69
2923 4143 2.985896 TCCTGGATTTTTAGGAGCACG 58.014 47.619 0.00 0.00 38.15 5.34
3032 4253 6.677920 GCCGAGTGCTATTGATATTGTGTTTT 60.678 38.462 0.00 0.00 36.87 2.43
3054 4275 6.957920 TTCTTTTGTGATTGTCCATCAGAA 57.042 33.333 0.00 0.00 42.98 3.02
3091 4312 7.012704 ACCATCACCAGAAGAATATCGAATTTG 59.987 37.037 0.00 0.00 0.00 2.32
3105 4326 3.951680 TCGAATTTGGGGGCTTAATCTTC 59.048 43.478 0.00 0.00 0.00 2.87
3256 4477 3.757270 ACAACCGATTAACCAATGGTCA 58.243 40.909 4.95 0.00 33.12 4.02
3259 4480 1.330521 CCGATTAACCAATGGTCAGCG 59.669 52.381 4.95 10.29 33.12 5.18
3298 4519 3.967987 ACATACCTCTACTTCATGGACCC 59.032 47.826 0.00 0.00 0.00 4.46
3594 4825 4.034048 GTGAATCGTTGGCGTCTGAATAAT 59.966 41.667 0.00 0.00 39.49 1.28
3682 4913 6.264744 ACTGACATAACCATATGCGTACTAGT 59.735 38.462 0.00 0.00 42.26 2.57
3683 4914 7.446319 ACTGACATAACCATATGCGTACTAGTA 59.554 37.037 0.00 0.00 42.26 1.82
3684 4915 7.813645 TGACATAACCATATGCGTACTAGTAG 58.186 38.462 1.87 0.00 42.26 2.57
3685 4916 7.662669 TGACATAACCATATGCGTACTAGTAGA 59.337 37.037 1.87 0.00 42.26 2.59
3686 4917 7.814642 ACATAACCATATGCGTACTAGTAGAC 58.185 38.462 1.87 0.00 42.26 2.59
3754 4985 5.028549 ACTCCTTATGTTGGCAGATACAG 57.971 43.478 0.00 0.00 0.00 2.74
3887 5118 0.525029 GCTCGAGCGGGTAGTGTAAC 60.525 60.000 23.61 0.00 0.00 2.50
3911 5142 5.509501 CCTGCAAAACACTGTGGATATTGTT 60.510 40.000 13.09 0.00 33.59 2.83
3977 5208 4.087182 CCCATGTAGGTAGTCCGTGATAT 58.913 47.826 0.00 0.00 39.05 1.63
3993 5224 7.496591 GTCCGTGATATTAGTATTTTGTCCCAA 59.503 37.037 0.00 0.00 0.00 4.12
4057 5288 1.730446 GCGTTCTCCTTGCTGAAATGC 60.730 52.381 0.00 0.00 0.00 3.56
4108 5339 3.375299 GGACTGCTTGACGATGCTAAAAT 59.625 43.478 0.00 0.00 0.00 1.82
4124 5355 7.338440 TGCTAAAATCGATGAGATATGTTCG 57.662 36.000 0.00 0.00 38.98 3.95
4147 5378 1.135094 CCAGTATGATGCTCCCCTGT 58.865 55.000 0.00 0.00 39.69 4.00
4148 5379 1.071385 CCAGTATGATGCTCCCCTGTC 59.929 57.143 0.00 0.00 39.69 3.51
4264 5500 2.673775 TGGAAATTGGGAACTCAGCA 57.326 45.000 0.00 0.00 0.00 4.41
4280 5516 2.067013 CAGCATAGGATCATGTGAGCG 58.933 52.381 8.40 0.00 0.00 5.03
4285 5521 4.631131 CATAGGATCATGTGAGCGGTTAA 58.369 43.478 0.00 0.00 0.00 2.01
4286 5522 3.627395 AGGATCATGTGAGCGGTTAAA 57.373 42.857 0.00 0.00 0.00 1.52
4334 5570 3.241067 TCTAAAGTGACGGCGCTATTT 57.759 42.857 3.85 0.00 33.70 1.40
4373 5609 8.862325 ACTATTTTGACACATTCAGGACATTA 57.138 30.769 0.00 0.00 34.94 1.90
4384 5620 8.777413 CACATTCAGGACATTATACATAACCAG 58.223 37.037 0.00 0.00 0.00 4.00
4461 5697 3.244561 ACATGAATGGTCAGGAAACGAGT 60.245 43.478 0.00 0.00 37.78 4.18
4496 5733 2.025418 GCATTGCACTTGTGCTGCC 61.025 57.895 23.53 9.43 36.02 4.85
4509 5746 3.225235 CTGCCTCAGCTACCCTCC 58.775 66.667 0.00 0.00 40.80 4.30
4515 5752 1.207791 CTCAGCTACCCTCCCATGTT 58.792 55.000 0.00 0.00 0.00 2.71
4516 5753 1.139853 CTCAGCTACCCTCCCATGTTC 59.860 57.143 0.00 0.00 0.00 3.18
4517 5754 0.181350 CAGCTACCCTCCCATGTTCC 59.819 60.000 0.00 0.00 0.00 3.62
4518 5755 0.044855 AGCTACCCTCCCATGTTCCT 59.955 55.000 0.00 0.00 0.00 3.36
4521 5758 2.196595 CTACCCTCCCATGTTCCTTGA 58.803 52.381 0.00 0.00 0.00 3.02
4522 5759 0.995024 ACCCTCCCATGTTCCTTGAG 59.005 55.000 0.00 0.00 0.00 3.02
4523 5760 0.257039 CCCTCCCATGTTCCTTGAGG 59.743 60.000 0.00 0.00 41.84 3.86
4524 5761 1.289160 CCTCCCATGTTCCTTGAGGA 58.711 55.000 0.00 0.00 44.34 3.71
4550 5793 7.158099 ACTAATTCCTTATTCCTTGTTGTGC 57.842 36.000 0.00 0.00 0.00 4.57
4602 5847 3.711814 TGGCCGGCCAAGAATCGA 61.712 61.111 45.50 20.75 44.12 3.59
4603 5848 3.202706 GGCCGGCCAAGAATCGAC 61.203 66.667 40.73 8.62 35.81 4.20
4604 5849 2.125106 GCCGGCCAAGAATCGACT 60.125 61.111 18.11 0.00 0.00 4.18
4605 5850 2.464459 GCCGGCCAAGAATCGACTG 61.464 63.158 18.11 0.00 0.00 3.51
4606 5851 1.079127 CCGGCCAAGAATCGACTGT 60.079 57.895 2.24 0.00 0.00 3.55
4607 5852 1.084370 CCGGCCAAGAATCGACTGTC 61.084 60.000 2.24 0.00 0.00 3.51
4608 5853 0.389817 CGGCCAAGAATCGACTGTCA 60.390 55.000 2.24 0.00 0.00 3.58
4609 5854 1.740380 CGGCCAAGAATCGACTGTCAT 60.740 52.381 2.24 0.00 0.00 3.06
4610 5855 1.667724 GGCCAAGAATCGACTGTCATG 59.332 52.381 8.73 0.00 0.00 3.07
4611 5856 2.621338 GCCAAGAATCGACTGTCATGA 58.379 47.619 8.73 0.00 0.00 3.07
4612 5857 3.002791 GCCAAGAATCGACTGTCATGAA 58.997 45.455 8.73 0.00 0.00 2.57
4613 5858 3.181516 GCCAAGAATCGACTGTCATGAAC 60.182 47.826 8.73 0.00 0.00 3.18
4614 5859 3.372206 CCAAGAATCGACTGTCATGAACC 59.628 47.826 8.73 0.00 0.00 3.62
4615 5860 2.881074 AGAATCGACTGTCATGAACCG 58.119 47.619 8.73 0.00 0.00 4.44
4616 5861 1.927174 GAATCGACTGTCATGAACCGG 59.073 52.381 8.73 0.00 0.00 5.28
4617 5862 1.182667 ATCGACTGTCATGAACCGGA 58.817 50.000 9.46 0.00 0.00 5.14
4618 5863 1.182667 TCGACTGTCATGAACCGGAT 58.817 50.000 9.46 0.00 0.00 4.18
4619 5864 1.134367 TCGACTGTCATGAACCGGATC 59.866 52.381 9.46 6.62 0.00 3.36
4620 5865 1.135112 CGACTGTCATGAACCGGATCA 60.135 52.381 17.51 17.51 0.00 2.92
4621 5866 2.271800 GACTGTCATGAACCGGATCAC 58.728 52.381 17.55 5.21 30.82 3.06
4622 5867 1.902508 ACTGTCATGAACCGGATCACT 59.097 47.619 17.55 3.80 30.82 3.41
4623 5868 2.274437 CTGTCATGAACCGGATCACTG 58.726 52.381 17.55 15.34 30.82 3.66
4624 5869 1.009829 GTCATGAACCGGATCACTGC 58.990 55.000 17.55 6.06 30.82 4.40
4625 5870 0.612744 TCATGAACCGGATCACTGCA 59.387 50.000 17.55 0.00 30.82 4.41
4626 5871 1.210234 TCATGAACCGGATCACTGCAT 59.790 47.619 17.55 0.00 30.82 3.96
4627 5872 1.600957 CATGAACCGGATCACTGCATC 59.399 52.381 17.55 0.00 30.82 3.91
4628 5873 0.460109 TGAACCGGATCACTGCATCG 60.460 55.000 10.84 0.00 0.00 3.84
4629 5874 0.460284 GAACCGGATCACTGCATCGT 60.460 55.000 9.46 0.00 0.00 3.73
4630 5875 0.460284 AACCGGATCACTGCATCGTC 60.460 55.000 9.46 0.00 0.00 4.20
4631 5876 1.323271 ACCGGATCACTGCATCGTCT 61.323 55.000 9.46 0.00 0.00 4.18
4632 5877 0.179100 CCGGATCACTGCATCGTCTT 60.179 55.000 0.00 0.00 0.00 3.01
4633 5878 1.067060 CCGGATCACTGCATCGTCTTA 59.933 52.381 0.00 0.00 0.00 2.10
4634 5879 2.389059 CGGATCACTGCATCGTCTTAG 58.611 52.381 0.00 0.00 0.00 2.18
4635 5880 2.033424 CGGATCACTGCATCGTCTTAGA 59.967 50.000 0.00 0.00 0.00 2.10
4636 5881 3.637432 GGATCACTGCATCGTCTTAGAG 58.363 50.000 0.00 0.00 0.00 2.43
4637 5882 3.067461 GGATCACTGCATCGTCTTAGAGT 59.933 47.826 0.00 0.00 0.00 3.24
4638 5883 4.276183 GGATCACTGCATCGTCTTAGAGTA 59.724 45.833 0.00 0.00 0.00 2.59
4639 5884 5.221067 GGATCACTGCATCGTCTTAGAGTAA 60.221 44.000 0.00 0.00 0.00 2.24
4640 5885 4.982999 TCACTGCATCGTCTTAGAGTAAC 58.017 43.478 0.00 0.00 0.00 2.50
4641 5886 4.457949 TCACTGCATCGTCTTAGAGTAACA 59.542 41.667 0.00 0.00 0.00 2.41
4642 5887 4.559251 CACTGCATCGTCTTAGAGTAACAC 59.441 45.833 0.00 0.00 0.00 3.32
4643 5888 4.106029 TGCATCGTCTTAGAGTAACACC 57.894 45.455 0.00 0.00 0.00 4.16
4644 5889 3.119245 TGCATCGTCTTAGAGTAACACCC 60.119 47.826 0.00 0.00 0.00 4.61
4645 5890 3.119245 GCATCGTCTTAGAGTAACACCCA 60.119 47.826 0.00 0.00 0.00 4.51
4663 5908 0.034756 CACGGGACTGTCATGAACCA 59.965 55.000 10.38 0.00 0.00 3.67
4764 6009 9.691362 ACTGAAAATAAAGCAAAATCGTGTTAT 57.309 25.926 0.00 0.00 0.00 1.89
4767 6012 8.958175 AAAATAAAGCAAAATCGTGTTATCGA 57.042 26.923 0.00 0.00 43.86 3.59
4789 6034 9.912634 ATCGATGATGATGTTTTGTTTTAAACT 57.087 25.926 9.33 0.00 38.52 2.66
4806 6051 7.696992 TTTAAACTTAGGCTGAACTAATGGG 57.303 36.000 0.00 0.00 32.88 4.00
4840 6085 4.588106 TGAAATTTTGATCAAGGTGGCTGA 59.412 37.500 8.41 0.00 0.00 4.26
4868 6113 5.415701 GTCATGGGAAATTTGCTTACTCAGA 59.584 40.000 9.70 0.00 0.00 3.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.178924 ATGGGCCTCAAAGTTTGCCT 60.179 50.000 10.90 0.00 43.50 4.75
1 2 0.037046 CATGGGCCTCAAAGTTTGCC 60.037 55.000 10.90 8.69 43.26 4.52
2 3 0.671472 GCATGGGCCTCAAAGTTTGC 60.671 55.000 10.90 1.86 0.00 3.68
3 4 3.520187 GCATGGGCCTCAAAGTTTG 57.480 52.632 9.44 9.44 0.00 2.93
26 27 2.359230 AGACGAGGCTGCCTTTGC 60.359 61.111 24.26 14.38 31.76 3.68
27 28 0.739112 GAGAGACGAGGCTGCCTTTG 60.739 60.000 24.26 20.15 31.76 2.77
28 29 1.594310 GAGAGACGAGGCTGCCTTT 59.406 57.895 24.26 13.23 31.76 3.11
29 30 2.355193 GGAGAGACGAGGCTGCCTT 61.355 63.158 24.26 7.79 31.76 4.35
30 31 2.757917 GGAGAGACGAGGCTGCCT 60.758 66.667 23.64 23.64 36.03 4.75
31 32 2.912987 TAGGGAGAGACGAGGCTGCC 62.913 65.000 11.65 11.65 42.32 4.85
32 33 1.454111 TAGGGAGAGACGAGGCTGC 60.454 63.158 0.00 0.00 0.00 5.25
33 34 1.440938 CGTAGGGAGAGACGAGGCTG 61.441 65.000 0.00 0.00 41.60 4.85
34 35 1.153127 CGTAGGGAGAGACGAGGCT 60.153 63.158 0.00 0.00 41.60 4.58
35 36 3.423179 CGTAGGGAGAGACGAGGC 58.577 66.667 0.00 0.00 41.60 4.70
48 49 1.226974 CACAGATGGCGACCCGTAG 60.227 63.158 0.00 0.00 0.00 3.51
49 50 2.717044 CCACAGATGGCGACCCGTA 61.717 63.158 0.00 0.00 39.82 4.02
50 51 4.082523 CCACAGATGGCGACCCGT 62.083 66.667 0.00 0.00 39.82 5.28
59 60 0.181350 GGGTTCCCTAGCCACAGATG 59.819 60.000 0.00 0.00 44.15 2.90
60 61 1.338136 CGGGTTCCCTAGCCACAGAT 61.338 60.000 6.31 0.00 45.03 2.90
61 62 1.987855 CGGGTTCCCTAGCCACAGA 60.988 63.158 6.31 0.00 45.03 3.41
62 63 2.584608 CGGGTTCCCTAGCCACAG 59.415 66.667 6.31 0.00 45.03 3.66
63 64 3.712907 GCGGGTTCCCTAGCCACA 61.713 66.667 6.31 0.00 45.03 4.17
64 65 4.484872 GGCGGGTTCCCTAGCCAC 62.485 72.222 17.80 0.00 45.03 5.01
66 67 4.176752 CTGGCGGGTTCCCTAGCC 62.177 72.222 16.45 16.45 43.48 3.93
67 68 3.081409 TCTGGCGGGTTCCCTAGC 61.081 66.667 6.31 3.00 0.00 3.42
68 69 1.338136 ATGTCTGGCGGGTTCCCTAG 61.338 60.000 6.31 2.48 0.00 3.02
69 70 0.912487 AATGTCTGGCGGGTTCCCTA 60.912 55.000 6.31 0.00 0.00 3.53
70 71 0.912487 TAATGTCTGGCGGGTTCCCT 60.912 55.000 6.31 0.00 0.00 4.20
71 72 0.182775 ATAATGTCTGGCGGGTTCCC 59.817 55.000 0.00 0.00 0.00 3.97
72 73 2.922740 TATAATGTCTGGCGGGTTCC 57.077 50.000 0.00 0.00 0.00 3.62
73 74 3.740115 ACATATAATGTCTGGCGGGTTC 58.260 45.455 0.00 0.00 39.92 3.62
74 75 3.857157 ACATATAATGTCTGGCGGGTT 57.143 42.857 0.00 0.00 39.92 4.11
75 76 5.488341 GAATACATATAATGTCTGGCGGGT 58.512 41.667 0.00 0.00 43.67 5.28
76 77 4.876107 GGAATACATATAATGTCTGGCGGG 59.124 45.833 0.00 0.00 43.67 6.13
77 78 5.734720 AGGAATACATATAATGTCTGGCGG 58.265 41.667 0.00 0.00 43.67 6.13
78 79 5.812642 GGAGGAATACATATAATGTCTGGCG 59.187 44.000 0.00 0.00 43.67 5.69
79 80 5.812642 CGGAGGAATACATATAATGTCTGGC 59.187 44.000 0.00 0.00 43.67 4.85
99 100 6.677781 TTTATTGATCAGCTAAAACCGGAG 57.322 37.500 9.46 0.00 0.00 4.63
100 101 7.201785 GGATTTTATTGATCAGCTAAAACCGGA 60.202 37.037 9.46 5.91 29.82 5.14
101 102 6.918022 GGATTTTATTGATCAGCTAAAACCGG 59.082 38.462 19.40 0.00 29.82 5.28
102 103 6.918022 GGGATTTTATTGATCAGCTAAAACCG 59.082 38.462 19.40 0.00 29.82 4.44
103 104 8.011844 AGGGATTTTATTGATCAGCTAAAACC 57.988 34.615 19.40 19.56 29.82 3.27
105 106 9.920946 ACTAGGGATTTTATTGATCAGCTAAAA 57.079 29.630 19.35 19.35 0.00 1.52
106 107 9.920946 AACTAGGGATTTTATTGATCAGCTAAA 57.079 29.630 0.00 2.24 0.00 1.85
108 109 9.998106 GTAACTAGGGATTTTATTGATCAGCTA 57.002 33.333 0.00 0.00 0.00 3.32
109 110 8.494433 TGTAACTAGGGATTTTATTGATCAGCT 58.506 33.333 0.00 0.00 0.00 4.24
110 111 8.560374 GTGTAACTAGGGATTTTATTGATCAGC 58.440 37.037 0.00 0.00 0.00 4.26
111 112 9.057089 GGTGTAACTAGGGATTTTATTGATCAG 57.943 37.037 0.00 0.00 36.74 2.90
112 113 8.778059 AGGTGTAACTAGGGATTTTATTGATCA 58.222 33.333 0.00 0.00 36.74 2.92
113 114 9.274206 GAGGTGTAACTAGGGATTTTATTGATC 57.726 37.037 0.00 0.00 36.74 2.92
114 115 8.778059 TGAGGTGTAACTAGGGATTTTATTGAT 58.222 33.333 0.00 0.00 36.74 2.57
115 116 8.153221 TGAGGTGTAACTAGGGATTTTATTGA 57.847 34.615 0.00 0.00 36.74 2.57
116 117 8.801882 TTGAGGTGTAACTAGGGATTTTATTG 57.198 34.615 0.00 0.00 36.74 1.90
117 118 9.816787 TTTTGAGGTGTAACTAGGGATTTTATT 57.183 29.630 0.00 0.00 36.74 1.40
118 119 9.816787 TTTTTGAGGTGTAACTAGGGATTTTAT 57.183 29.630 0.00 0.00 36.74 1.40
141 142 0.035739 CATTGGGCAGCCAGCTTTTT 59.964 50.000 15.19 0.00 44.79 1.94
142 143 1.123246 ACATTGGGCAGCCAGCTTTT 61.123 50.000 15.19 0.00 44.79 2.27
143 144 1.123246 AACATTGGGCAGCCAGCTTT 61.123 50.000 15.19 0.00 44.79 3.51
149 150 0.461135 CCATGTAACATTGGGCAGCC 59.539 55.000 1.26 1.26 0.00 4.85
159 160 6.686378 GCCACTCTAGATTGATCCATGTAACA 60.686 42.308 11.46 0.00 0.00 2.41
160 161 5.698545 GCCACTCTAGATTGATCCATGTAAC 59.301 44.000 11.46 0.00 0.00 2.50
174 175 2.354704 CGTCATTTTGGGCCACTCTAGA 60.355 50.000 5.23 0.00 0.00 2.43
175 176 2.009774 CGTCATTTTGGGCCACTCTAG 58.990 52.381 5.23 0.00 0.00 2.43
183 184 2.178273 GACGGCGTCATTTTGGGC 59.822 61.111 33.07 4.36 32.09 5.36
186 187 0.366871 CTCTCGACGGCGTCATTTTG 59.633 55.000 35.62 20.98 38.98 2.44
197 198 2.502080 GACACCGCACTCTCGACG 60.502 66.667 0.00 0.00 0.00 5.12
199 200 1.285950 CTTGACACCGCACTCTCGA 59.714 57.895 0.00 0.00 0.00 4.04
211 212 1.302192 GCTGTAACGGCCCTTGACA 60.302 57.895 0.00 0.00 0.00 3.58
234 235 5.846994 CGCGTCACTTAAGATAGACAGATAC 59.153 44.000 10.09 1.91 0.00 2.24
240 241 3.106672 CCACGCGTCACTTAAGATAGAC 58.893 50.000 9.86 12.39 0.00 2.59
247 248 1.957186 GCACCCACGCGTCACTTAA 60.957 57.895 9.86 0.00 0.00 1.85
250 251 4.969196 CTGCACCCACGCGTCACT 62.969 66.667 9.86 0.00 33.35 3.41
267 268 1.812922 CCGCTCTCATCCACTGCAC 60.813 63.158 0.00 0.00 0.00 4.57
271 272 1.145598 CATGCCGCTCTCATCCACT 59.854 57.895 0.00 0.00 0.00 4.00
272 273 1.890979 CCATGCCGCTCTCATCCAC 60.891 63.158 0.00 0.00 0.00 4.02
273 274 2.507452 CCATGCCGCTCTCATCCA 59.493 61.111 0.00 0.00 0.00 3.41
274 275 2.976903 GCCATGCCGCTCTCATCC 60.977 66.667 0.00 0.00 0.00 3.51
275 276 1.820906 TTGCCATGCCGCTCTCATC 60.821 57.895 0.00 0.00 0.00 2.92
276 277 2.117156 GTTGCCATGCCGCTCTCAT 61.117 57.895 0.00 0.00 0.00 2.90
280 281 3.818787 CCTGTTGCCATGCCGCTC 61.819 66.667 0.00 0.00 0.00 5.03
288 289 1.136828 AACCACTCTACCTGTTGCCA 58.863 50.000 0.00 0.00 0.00 4.92
299 300 2.158957 TCAGACGCTTTTCAACCACTCT 60.159 45.455 0.00 0.00 0.00 3.24
301 302 2.325583 TCAGACGCTTTTCAACCACT 57.674 45.000 0.00 0.00 0.00 4.00
302 303 3.181500 ACTTTCAGACGCTTTTCAACCAC 60.181 43.478 0.00 0.00 0.00 4.16
303 304 3.013921 ACTTTCAGACGCTTTTCAACCA 58.986 40.909 0.00 0.00 0.00 3.67
304 305 3.618698 GACTTTCAGACGCTTTTCAACC 58.381 45.455 0.00 0.00 0.00 3.77
305 306 3.280775 CGACTTTCAGACGCTTTTCAAC 58.719 45.455 0.00 0.00 0.00 3.18
306 307 2.286833 CCGACTTTCAGACGCTTTTCAA 59.713 45.455 0.00 0.00 32.36 2.69
307 308 1.864711 CCGACTTTCAGACGCTTTTCA 59.135 47.619 0.00 0.00 32.36 2.69
308 309 1.865340 ACCGACTTTCAGACGCTTTTC 59.135 47.619 0.00 0.00 32.36 2.29
309 310 1.949465 ACCGACTTTCAGACGCTTTT 58.051 45.000 0.00 0.00 32.36 2.27
345 346 0.944311 CGTTGTTGAGTGGTCTCCGG 60.944 60.000 0.00 0.00 39.75 5.14
346 347 1.557443 GCGTTGTTGAGTGGTCTCCG 61.557 60.000 0.00 0.00 39.75 4.63
347 348 0.531974 TGCGTTGTTGAGTGGTCTCC 60.532 55.000 0.00 0.00 39.75 3.71
348 349 0.582005 GTGCGTTGTTGAGTGGTCTC 59.418 55.000 0.00 0.00 40.79 3.36
349 350 0.814010 GGTGCGTTGTTGAGTGGTCT 60.814 55.000 0.00 0.00 0.00 3.85
364 365 2.095059 CCACTGACAGCTAAAATGGTGC 60.095 50.000 1.25 0.00 38.84 5.01
367 368 1.474077 GGCCACTGACAGCTAAAATGG 59.526 52.381 1.25 2.71 0.00 3.16
379 380 3.158537 TTTCGACTGCGGCCACTGA 62.159 57.895 2.24 0.00 38.28 3.41
385 386 0.109226 ACTCTAGTTTCGACTGCGGC 60.109 55.000 0.00 0.00 38.28 6.53
387 388 2.911723 CTCAACTCTAGTTTCGACTGCG 59.088 50.000 0.00 0.00 35.83 5.18
390 391 5.944599 TCCATACTCAACTCTAGTTTCGACT 59.055 40.000 0.00 0.00 35.83 4.18
393 394 5.980116 CCATCCATACTCAACTCTAGTTTCG 59.020 44.000 0.00 0.00 35.83 3.46
401 413 4.063689 CTGCATCCATCCATACTCAACTC 58.936 47.826 0.00 0.00 0.00 3.01
405 417 1.270465 CGCTGCATCCATCCATACTCA 60.270 52.381 0.00 0.00 0.00 3.41
407 419 0.761187 ACGCTGCATCCATCCATACT 59.239 50.000 0.00 0.00 0.00 2.12
431 443 2.816958 CAGCTTCAGGCACGCGAT 60.817 61.111 15.93 0.00 44.79 4.58
472 484 2.512692 ATTGCTGGAACCTATGCACA 57.487 45.000 0.00 0.00 35.01 4.57
473 485 3.243201 GCTTATTGCTGGAACCTATGCAC 60.243 47.826 0.00 0.00 38.95 4.57
488 598 3.117434 GGTACGTGCACAAGCTTATTG 57.883 47.619 18.64 0.09 42.74 1.90
506 616 4.510038 AGTTTTCATCTACGTGTACGGT 57.490 40.909 9.40 0.00 44.95 4.83
514 624 4.334443 CAATCCGCAAGTTTTCATCTACG 58.666 43.478 0.00 0.00 0.00 3.51
516 626 4.355543 GCAATCCGCAAGTTTTCATCTA 57.644 40.909 0.00 0.00 41.79 1.98
517 627 3.221964 GCAATCCGCAAGTTTTCATCT 57.778 42.857 0.00 0.00 41.79 2.90
530 640 2.728846 CGTTGTTGATCCTTGCAATCCG 60.729 50.000 0.00 0.00 0.00 4.18
541 651 1.734163 CTACACCCCCGTTGTTGATC 58.266 55.000 0.00 0.00 0.00 2.92
700 1145 2.420722 GGTACGATGATTCCCGCAAAAA 59.579 45.455 0.00 0.00 0.00 1.94
701 1146 2.011222 GGTACGATGATTCCCGCAAAA 58.989 47.619 0.00 0.00 0.00 2.44
702 1147 1.658994 GGTACGATGATTCCCGCAAA 58.341 50.000 0.00 0.00 0.00 3.68
703 1148 3.372795 GGTACGATGATTCCCGCAA 57.627 52.632 0.00 0.00 0.00 4.85
730 1175 3.407967 GCGGACCTTGGGATGGGA 61.408 66.667 0.00 0.00 0.00 4.37
732 1177 3.727258 TGGCGGACCTTGGGATGG 61.727 66.667 0.00 0.00 36.63 3.51
733 1178 2.438434 GTGGCGGACCTTGGGATG 60.438 66.667 0.00 0.00 36.63 3.51
734 1179 3.728373 GGTGGCGGACCTTGGGAT 61.728 66.667 0.00 0.00 42.25 3.85
760 1205 2.615618 CGCTGCAGAATACGCGTC 59.384 61.111 18.63 0.16 40.64 5.19
793 1239 0.657840 GATGGGAAGAACGGAATGCG 59.342 55.000 0.00 0.00 0.00 4.73
794 1240 1.025041 GGATGGGAAGAACGGAATGC 58.975 55.000 0.00 0.00 0.00 3.56
804 1250 1.450312 GCGTGAGGTGGATGGGAAG 60.450 63.158 0.00 0.00 0.00 3.46
806 1252 2.606213 TGCGTGAGGTGGATGGGA 60.606 61.111 0.00 0.00 0.00 4.37
847 1293 3.723554 GGTCTTGTGAGCCGTAGAG 57.276 57.895 0.00 0.00 34.87 2.43
860 1306 4.675029 CGTCGTTGCGGGGGTCTT 62.675 66.667 0.00 0.00 0.00 3.01
882 1328 3.083349 CGGGAGGAGATGGTGCCA 61.083 66.667 0.00 0.00 0.00 4.92
918 1364 0.536460 TCCTCGGCCACTTTTGTTCC 60.536 55.000 2.24 0.00 0.00 3.62
922 1368 1.269569 GGTTTTCCTCGGCCACTTTTG 60.270 52.381 2.24 0.00 36.94 2.44
930 1376 1.971695 CCTGGTGGTTTTCCTCGGC 60.972 63.158 0.00 0.00 41.38 5.54
946 1392 1.469335 TTCGCTCTTCCGTTGGTCCT 61.469 55.000 0.00 0.00 0.00 3.85
958 1404 1.261238 CCAGTTCCCCTCTTCGCTCT 61.261 60.000 0.00 0.00 0.00 4.09
959 1405 1.219393 CCAGTTCCCCTCTTCGCTC 59.781 63.158 0.00 0.00 0.00 5.03
960 1406 2.294078 CCCAGTTCCCCTCTTCGCT 61.294 63.158 0.00 0.00 0.00 4.93
962 1408 0.036294 GTTCCCAGTTCCCCTCTTCG 60.036 60.000 0.00 0.00 0.00 3.79
1075 1528 4.101448 GATCAGGGTGGCGCAGGT 62.101 66.667 10.83 0.00 0.00 4.00
1090 1543 2.243810 GGATACCTTGAGCTCCGAGAT 58.756 52.381 12.15 0.00 0.00 2.75
1152 1605 2.721167 CCCCTTCCTCATCGTCGCA 61.721 63.158 0.00 0.00 0.00 5.10
1153 1606 2.107141 CCCCTTCCTCATCGTCGC 59.893 66.667 0.00 0.00 0.00 5.19
1156 1609 1.132500 GAATCCCCCTTCCTCATCGT 58.868 55.000 0.00 0.00 0.00 3.73
1157 1610 0.034059 CGAATCCCCCTTCCTCATCG 59.966 60.000 0.00 0.00 0.00 3.84
1159 1612 0.327576 ACCGAATCCCCCTTCCTCAT 60.328 55.000 0.00 0.00 0.00 2.90
1160 1613 0.340558 TACCGAATCCCCCTTCCTCA 59.659 55.000 0.00 0.00 0.00 3.86
1189 1644 1.641677 GCGTATACAGCGGGCAAAG 59.358 57.895 3.32 0.00 0.00 2.77
1201 1656 4.443063 CGGATTTCAGAAACATCGCGTATA 59.557 41.667 5.77 0.00 0.00 1.47
1252 1707 2.747989 GGAACTCCCGAATTCTCCAAAC 59.252 50.000 3.52 0.00 0.00 2.93
1282 1747 1.153025 GCTCGTAAACCCCATCCCC 60.153 63.158 0.00 0.00 0.00 4.81
1283 1748 1.523032 CGCTCGTAAACCCCATCCC 60.523 63.158 0.00 0.00 0.00 3.85
1296 1761 3.788766 CTCGCCCAAAACCGCTCG 61.789 66.667 0.00 0.00 0.00 5.03
1346 1812 2.008242 TCAAACCCAGGTGGAAATGG 57.992 50.000 0.00 0.00 37.39 3.16
1388 1854 1.691337 ATCCCGAATTCCCGACCCA 60.691 57.895 0.00 0.00 0.00 4.51
1448 1915 1.718757 CGCATCAAACCCTAGGCAGC 61.719 60.000 2.05 0.00 0.00 5.25
1469 1936 1.272648 CCTCCCCTCATTTCCAGCAAA 60.273 52.381 0.00 0.00 0.00 3.68
1524 1991 6.721208 ACATTGTTATTGTGGAACTGGATCTT 59.279 34.615 0.00 0.00 38.04 2.40
1566 2034 1.221840 CGTGAATCCCCAGACCAGG 59.778 63.158 0.00 0.00 0.00 4.45
1572 2040 0.833287 ATCCTGTCGTGAATCCCCAG 59.167 55.000 0.00 0.00 0.00 4.45
1578 2047 1.402968 GCATTGCATCCTGTCGTGAAT 59.597 47.619 3.15 0.00 0.00 2.57
1584 2053 1.171308 ACACAGCATTGCATCCTGTC 58.829 50.000 11.91 0.00 37.70 3.51
1585 2054 1.624336 AACACAGCATTGCATCCTGT 58.376 45.000 11.91 3.36 40.22 4.00
1606 2075 6.370166 GTGAAACCCTGACAATTCAAAACAAA 59.630 34.615 0.00 0.00 33.93 2.83
1607 2076 5.872070 GTGAAACCCTGACAATTCAAAACAA 59.128 36.000 0.00 0.00 33.93 2.83
1608 2077 5.186797 AGTGAAACCCTGACAATTCAAAACA 59.813 36.000 0.00 0.00 37.80 2.83
1609 2078 5.660460 AGTGAAACCCTGACAATTCAAAAC 58.340 37.500 0.00 0.00 37.80 2.43
1610 2079 5.930837 AGTGAAACCCTGACAATTCAAAA 57.069 34.783 0.00 0.00 37.80 2.44
1619 2088 5.461526 GCTGAATTTAAGTGAAACCCTGAC 58.538 41.667 0.00 0.00 37.80 3.51
1691 2160 3.807209 GCAGGCTAGGAAACTTTGTGAGA 60.807 47.826 0.00 0.00 43.67 3.27
1710 2179 6.460123 GGTGTATTCTTAAATGATGGTGGCAG 60.460 42.308 0.00 0.00 0.00 4.85
1725 2194 3.056607 GCAACTGCATTGGGTGTATTCTT 60.057 43.478 9.81 0.00 41.59 2.52
1729 2198 0.810648 CGCAACTGCATTGGGTGTAT 59.189 50.000 13.85 0.00 44.27 2.29
1730 2199 2.252556 CGCAACTGCATTGGGTGTA 58.747 52.632 13.85 0.00 44.27 2.90
1736 2205 1.154093 CAGCTCCGCAACTGCATTG 60.154 57.895 2.12 0.00 42.21 2.82
1923 2820 3.585862 ACACCTTCAACTACATAGCACG 58.414 45.455 0.00 0.00 0.00 5.34
1961 2858 2.093500 AGCTCAATACACGCATCCTGAA 60.093 45.455 0.00 0.00 0.00 3.02
1963 2860 1.863454 GAGCTCAATACACGCATCCTG 59.137 52.381 9.40 0.00 0.00 3.86
1971 2868 7.096436 CGAACATACATACAGAGCTCAATACAC 60.096 40.741 17.77 0.00 0.00 2.90
1977 2874 3.381590 AGCGAACATACATACAGAGCTCA 59.618 43.478 17.77 0.00 0.00 4.26
2000 2897 2.472695 TGCAGTTGTAGTCCATGACC 57.527 50.000 0.00 0.00 32.18 4.02
2125 3337 5.432885 ACTACACACTTGCAAAATGGTAC 57.567 39.130 13.41 0.00 0.00 3.34
2154 3366 5.183331 CAGCAGTCTTACAGTAGGACAGTTA 59.817 44.000 21.49 0.00 37.26 2.24
2155 3367 4.021894 CAGCAGTCTTACAGTAGGACAGTT 60.022 45.833 21.49 11.17 37.26 3.16
2379 3595 5.523188 GTCCTTAACTCTGATGCTGAAGATG 59.477 44.000 0.00 0.00 0.00 2.90
2442 3658 7.687941 AACAAACCTTGTATCCATGTAGAAG 57.312 36.000 0.00 0.00 44.59 2.85
2494 3710 8.744652 ACTACATAGGATGAATCTATGCAGTAC 58.255 37.037 12.60 0.00 44.02 2.73
2604 3820 4.145052 AGTGCATGTCCACGATCTAGATA 58.855 43.478 4.89 0.00 40.59 1.98
2650 3866 3.880490 TCACAACACATAACTTCCACCAC 59.120 43.478 0.00 0.00 0.00 4.16
2699 3915 6.042093 TGAGGAATAGAATGCCAAGGTACTAG 59.958 42.308 0.00 0.00 38.49 2.57
2700 3916 5.903010 TGAGGAATAGAATGCCAAGGTACTA 59.097 40.000 0.00 0.00 38.49 1.82
2799 4019 1.070309 GTGCTGACTGCTGAACGAAAG 60.070 52.381 5.87 0.00 43.37 2.62
2801 4021 0.179086 TGTGCTGACTGCTGAACGAA 60.179 50.000 5.87 0.00 43.37 3.85
2825 4045 6.471841 CGACTTGACAAATGACAAACAATGAA 59.528 34.615 0.49 0.00 30.22 2.57
2917 4137 2.555199 AGCCACAAGATAATCGTGCTC 58.445 47.619 0.00 0.00 28.70 4.26
3032 4253 5.048504 GCTTCTGATGGACAATCACAAAAGA 60.049 40.000 8.22 0.00 40.50 2.52
3046 4267 2.486191 GGTGGGAGTATGCTTCTGATGG 60.486 54.545 0.00 0.00 0.00 3.51
3054 4275 0.839946 GGTGATGGTGGGAGTATGCT 59.160 55.000 0.00 0.00 0.00 3.79
3091 4312 1.477740 GCCTCAGAAGATTAAGCCCCC 60.478 57.143 0.00 0.00 0.00 5.40
3105 4326 0.035881 TTCTCAGCCAACAGCCTCAG 59.964 55.000 0.00 0.00 45.47 3.35
3167 4388 1.415659 CAAGGATGGTCTAGGGCTCTG 59.584 57.143 0.00 0.00 0.00 3.35
3203 4424 3.003068 CCATAAAGGATTGCTCAAGCTCG 59.997 47.826 3.32 0.00 41.22 5.03
3256 4477 2.745100 CATGTGGCACAGCTCGCT 60.745 61.111 26.04 4.77 41.80 4.93
3259 4480 0.321034 TGTCTCATGTGGCACAGCTC 60.321 55.000 26.04 13.77 41.80 4.09
3298 4519 7.672983 TTCACCTAATAGTTTCAGCAAGAAG 57.327 36.000 0.00 0.00 37.57 2.85
3346 4567 0.108585 AACTTCACCACACGAGCCAT 59.891 50.000 0.00 0.00 0.00 4.40
3451 4673 6.366061 GGAAAACATCAGCATTTTTCTGGTAC 59.634 38.462 6.12 0.00 38.65 3.34
3528 4758 3.131223 ACATGGTGATAGGACAGAAGACG 59.869 47.826 0.00 0.00 0.00 4.18
3594 4825 7.124448 ACAAGATGTGTTTTACCACCCTTTAAA 59.876 33.333 0.00 0.00 37.01 1.52
3682 4913 9.459640 GCGTTAACAATCATACAATCTAGTCTA 57.540 33.333 6.39 0.00 0.00 2.59
3683 4914 8.198109 AGCGTTAACAATCATACAATCTAGTCT 58.802 33.333 6.39 0.00 0.00 3.24
3684 4915 8.269424 CAGCGTTAACAATCATACAATCTAGTC 58.731 37.037 6.39 0.00 0.00 2.59
3685 4916 7.254455 GCAGCGTTAACAATCATACAATCTAGT 60.254 37.037 6.39 0.00 0.00 2.57
3686 4917 7.065894 GCAGCGTTAACAATCATACAATCTAG 58.934 38.462 6.39 0.00 0.00 2.43
3754 4985 2.425143 TCTGAACCTCCCATTCATGC 57.575 50.000 0.00 0.00 35.57 4.06
3887 5118 4.022068 ACAATATCCACAGTGTTTTGCAGG 60.022 41.667 0.00 0.00 0.00 4.85
3892 5123 5.333798 CGTCGAACAATATCCACAGTGTTTT 60.334 40.000 0.00 0.00 34.44 2.43
3911 5142 1.265095 GTTATACCATCCGCTCGTCGA 59.735 52.381 0.00 0.00 41.67 4.20
3993 5224 3.561143 AGCATCTAGACTGATCGTTCCT 58.439 45.455 0.00 0.00 0.00 3.36
4057 5288 5.750067 CCTGTGTTTTCAACAGAAATTCCAG 59.250 40.000 5.17 0.00 43.10 3.86
4083 5314 1.296392 CATCGTCAAGCAGTCCCCA 59.704 57.895 0.00 0.00 0.00 4.96
4092 5323 5.460091 TCTCATCGATTTTAGCATCGTCAAG 59.540 40.000 0.00 1.76 45.28 3.02
4108 5339 3.634910 TGGAACCGAACATATCTCATCGA 59.365 43.478 0.00 0.00 37.48 3.59
4124 5355 1.202818 GGGGAGCATCATACTGGAACC 60.203 57.143 0.00 0.00 36.25 3.62
4147 5378 8.616942 TGAACTGAACTTAAATGAATTTCACGA 58.383 29.630 0.15 0.00 33.20 4.35
4148 5379 8.781067 TGAACTGAACTTAAATGAATTTCACG 57.219 30.769 0.15 0.00 33.20 4.35
4264 5500 4.955811 TTAACCGCTCACATGATCCTAT 57.044 40.909 0.00 0.00 0.00 2.57
4285 5521 9.927081 AATGGGAGATAGATTTGATAACAAGTT 57.073 29.630 0.00 0.00 37.32 2.66
4286 5522 9.927081 AAATGGGAGATAGATTTGATAACAAGT 57.073 29.630 0.00 0.00 37.32 3.16
4334 5570 6.014584 TGTCAAAATAGTTCTACTGGCTGAGA 60.015 38.462 0.00 0.00 0.00 3.27
4373 5609 3.134804 GGGTCAGTGAGCTGGTTATGTAT 59.865 47.826 20.97 0.00 42.78 2.29
4384 5620 2.680352 TCCCGAGGGTCAGTGAGC 60.680 66.667 14.04 14.04 36.47 4.26
4461 5697 2.671130 TGCTGCATCGAGTATGTTGA 57.329 45.000 0.00 0.00 37.93 3.18
4496 5733 1.139853 GAACATGGGAGGGTAGCTGAG 59.860 57.143 0.00 0.00 0.00 3.35
4523 5760 9.626045 CACAACAAGGAATAAGGAATTAGTTTC 57.374 33.333 0.00 0.00 0.00 2.78
4524 5761 8.088365 GCACAACAAGGAATAAGGAATTAGTTT 58.912 33.333 0.00 0.00 0.00 2.66
4527 5764 7.156876 TGCACAACAAGGAATAAGGAATTAG 57.843 36.000 0.00 0.00 0.00 1.73
4528 5765 7.716799 ATGCACAACAAGGAATAAGGAATTA 57.283 32.000 0.00 0.00 0.00 1.40
4529 5766 6.610075 ATGCACAACAAGGAATAAGGAATT 57.390 33.333 0.00 0.00 0.00 2.17
4531 5768 6.350110 GCTAATGCACAACAAGGAATAAGGAA 60.350 38.462 0.00 0.00 39.41 3.36
4532 5769 5.125417 GCTAATGCACAACAAGGAATAAGGA 59.875 40.000 0.00 0.00 39.41 3.36
4550 5793 8.346300 TCTCTACTCTGTCGATTAAAGCTAATG 58.654 37.037 0.00 0.00 0.00 1.90
4601 5846 2.093973 AGTGATCCGGTTCATGACAGTC 60.094 50.000 17.92 3.99 0.00 3.51
4602 5847 1.902508 AGTGATCCGGTTCATGACAGT 59.097 47.619 17.92 0.00 0.00 3.55
4603 5848 2.274437 CAGTGATCCGGTTCATGACAG 58.726 52.381 17.92 3.91 0.00 3.51
4604 5849 1.675714 GCAGTGATCCGGTTCATGACA 60.676 52.381 17.92 0.00 0.00 3.58
4605 5850 1.009829 GCAGTGATCCGGTTCATGAC 58.990 55.000 17.92 6.05 0.00 3.06
4606 5851 0.612744 TGCAGTGATCCGGTTCATGA 59.387 50.000 17.92 0.00 0.00 3.07
4607 5852 1.600957 GATGCAGTGATCCGGTTCATG 59.399 52.381 17.92 16.24 0.00 3.07
4608 5853 1.807755 CGATGCAGTGATCCGGTTCAT 60.808 52.381 17.92 1.92 0.00 2.57
4609 5854 0.460109 CGATGCAGTGATCCGGTTCA 60.460 55.000 11.25 11.25 0.00 3.18
4610 5855 0.460284 ACGATGCAGTGATCCGGTTC 60.460 55.000 0.00 2.73 0.00 3.62
4611 5856 0.460284 GACGATGCAGTGATCCGGTT 60.460 55.000 0.00 0.00 0.00 4.44
4612 5857 1.141881 GACGATGCAGTGATCCGGT 59.858 57.895 0.00 0.00 0.00 5.28
4613 5858 0.179100 AAGACGATGCAGTGATCCGG 60.179 55.000 0.00 0.00 0.00 5.14
4614 5859 2.033424 TCTAAGACGATGCAGTGATCCG 59.967 50.000 0.00 0.00 0.00 4.18
4615 5860 3.067461 ACTCTAAGACGATGCAGTGATCC 59.933 47.826 0.00 0.00 0.00 3.36
4616 5861 4.300189 ACTCTAAGACGATGCAGTGATC 57.700 45.455 0.00 0.00 0.00 2.92
4617 5862 5.125578 TGTTACTCTAAGACGATGCAGTGAT 59.874 40.000 0.00 0.00 0.00 3.06
4618 5863 4.457949 TGTTACTCTAAGACGATGCAGTGA 59.542 41.667 0.00 0.00 0.00 3.41
4619 5864 4.559251 GTGTTACTCTAAGACGATGCAGTG 59.441 45.833 0.00 0.00 0.00 3.66
4620 5865 4.380655 GGTGTTACTCTAAGACGATGCAGT 60.381 45.833 0.00 0.00 33.17 4.40
4621 5866 4.106197 GGTGTTACTCTAAGACGATGCAG 58.894 47.826 0.00 0.00 33.17 4.41
4622 5867 3.119245 GGGTGTTACTCTAAGACGATGCA 60.119 47.826 0.00 0.00 33.17 3.96
4623 5868 3.119245 TGGGTGTTACTCTAAGACGATGC 60.119 47.826 0.00 0.00 33.17 3.91
4624 5869 4.421948 GTGGGTGTTACTCTAAGACGATG 58.578 47.826 0.00 0.00 33.17 3.84
4625 5870 3.128242 CGTGGGTGTTACTCTAAGACGAT 59.872 47.826 0.00 0.00 33.17 3.73
4626 5871 2.485426 CGTGGGTGTTACTCTAAGACGA 59.515 50.000 0.00 0.00 33.17 4.20
4627 5872 2.415090 CCGTGGGTGTTACTCTAAGACG 60.415 54.545 0.00 0.00 33.17 4.18
4628 5873 2.094338 CCCGTGGGTGTTACTCTAAGAC 60.094 54.545 0.00 0.00 0.00 3.01
4629 5874 2.173519 CCCGTGGGTGTTACTCTAAGA 58.826 52.381 0.00 0.00 0.00 2.10
4630 5875 2.094338 GTCCCGTGGGTGTTACTCTAAG 60.094 54.545 4.53 0.00 36.47 2.18
4631 5876 1.895131 GTCCCGTGGGTGTTACTCTAA 59.105 52.381 4.53 0.00 36.47 2.10
4632 5877 1.076024 AGTCCCGTGGGTGTTACTCTA 59.924 52.381 4.53 0.00 36.47 2.43
4633 5878 0.178941 AGTCCCGTGGGTGTTACTCT 60.179 55.000 4.53 0.00 36.47 3.24
4634 5879 0.037605 CAGTCCCGTGGGTGTTACTC 60.038 60.000 4.53 0.00 36.47 2.59
4635 5880 0.761702 ACAGTCCCGTGGGTGTTACT 60.762 55.000 4.53 0.00 36.47 2.24
4636 5881 0.320160 GACAGTCCCGTGGGTGTTAC 60.320 60.000 4.53 0.00 36.47 2.50
4637 5882 0.759812 TGACAGTCCCGTGGGTGTTA 60.760 55.000 4.53 0.00 36.47 2.41
4638 5883 1.415672 ATGACAGTCCCGTGGGTGTT 61.416 55.000 4.53 0.00 36.47 3.32
4639 5884 1.841556 ATGACAGTCCCGTGGGTGT 60.842 57.895 4.53 2.63 36.47 4.16
4640 5885 1.375908 CATGACAGTCCCGTGGGTG 60.376 63.158 4.53 0.00 36.47 4.61
4641 5886 1.125093 TTCATGACAGTCCCGTGGGT 61.125 55.000 4.53 0.00 36.47 4.51
4642 5887 0.673644 GTTCATGACAGTCCCGTGGG 60.674 60.000 0.00 0.00 0.00 4.61
4643 5888 0.673644 GGTTCATGACAGTCCCGTGG 60.674 60.000 0.00 0.00 0.00 4.94
4644 5889 0.034756 TGGTTCATGACAGTCCCGTG 59.965 55.000 0.00 0.00 0.00 4.94
4645 5890 0.321671 CTGGTTCATGACAGTCCCGT 59.678 55.000 0.00 0.00 0.00 5.28
4663 5908 1.411977 CTCAAGTCGATGCAGGGATCT 59.588 52.381 0.00 0.00 0.00 2.75
4735 5980 7.167468 ACACGATTTTGCTTTATTTTCAGTGAC 59.833 33.333 0.00 0.00 0.00 3.67
4764 6009 9.743057 AAGTTTAAAACAAAACATCATCATCGA 57.257 25.926 0.00 0.00 40.97 3.59
4775 6020 8.697846 AGTTCAGCCTAAGTTTAAAACAAAAC 57.302 30.769 0.00 0.00 39.22 2.43
4789 6034 2.356741 GGCACCCATTAGTTCAGCCTAA 60.357 50.000 0.00 0.00 37.67 2.69
4806 6051 3.701241 TCAAAATTTCAAGTGACGGCAC 58.299 40.909 15.39 15.39 45.49 5.01
4840 6085 2.893424 AGCAAATTTCCCATGACCTGT 58.107 42.857 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.