Multiple sequence alignment - TraesCS2A01G425700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G425700 chr2A 100.000 7727 0 0 1 7727 679502814 679510540 0.000000e+00 14270.0
1 TraesCS2A01G425700 chr2A 87.719 171 19 2 279 447 719496810 719496640 1.700000e-46 198.0
2 TraesCS2A01G425700 chr2A 86.857 175 19 4 275 447 41145399 41145227 7.910000e-45 193.0
3 TraesCS2A01G425700 chr2B 93.926 3754 140 27 1060 4757 638962694 638966415 0.000000e+00 5589.0
4 TraesCS2A01G425700 chr2B 93.603 2173 109 19 4915 7072 638966413 638968570 0.000000e+00 3216.0
5 TraesCS2A01G425700 chr2B 81.737 668 70 29 7084 7727 638968716 638969355 1.920000e-140 510.0
6 TraesCS2A01G425700 chr2B 76.384 271 49 12 469 732 669159737 669159475 1.750000e-26 132.0
7 TraesCS2A01G425700 chr2D 96.214 2932 95 9 1831 4757 536914166 536917086 0.000000e+00 4785.0
8 TraesCS2A01G425700 chr2D 90.229 2835 198 53 4915 7726 536917084 536919862 0.000000e+00 3627.0
9 TraesCS2A01G425700 chr2D 88.118 1902 142 36 1 1839 536912129 536914009 0.000000e+00 2183.0
10 TraesCS2A01G425700 chr2D 93.865 163 10 0 4755 4917 87407526 87407364 5.990000e-61 246.0
11 TraesCS2A01G425700 chr2D 86.047 172 21 3 278 447 605349961 605349791 1.710000e-41 182.0
12 TraesCS2A01G425700 chr7B 84.802 454 52 8 2289 2741 92207587 92207150 2.560000e-119 440.0
13 TraesCS2A01G425700 chr7B 96.970 33 1 0 705 737 117218998 117218966 1.000000e-03 56.5
14 TraesCS2A01G425700 chr4D 93.491 169 10 1 4753 4921 334164555 334164388 4.630000e-62 250.0
15 TraesCS2A01G425700 chr1D 93.939 165 10 0 4756 4920 443117355 443117191 4.630000e-62 250.0
16 TraesCS2A01G425700 chr7D 92.486 173 13 0 4756 4928 296507844 296507672 1.670000e-61 248.0
17 TraesCS2A01G425700 chr5A 92.486 173 13 0 4746 4918 320214415 320214243 1.670000e-61 248.0
18 TraesCS2A01G425700 chr5A 76.608 342 55 18 468 796 637188692 637189021 1.730000e-36 165.0
19 TraesCS2A01G425700 chr7A 93.333 165 11 0 4756 4920 494786829 494786993 2.150000e-60 244.0
20 TraesCS2A01G425700 chr7A 85.965 171 22 2 279 447 569123491 569123661 1.710000e-41 182.0
21 TraesCS2A01G425700 chr7A 77.725 211 33 10 533 737 170075015 170074813 4.900000e-22 117.0
22 TraesCS2A01G425700 chr3D 93.333 165 11 0 4756 4920 87926161 87925997 2.150000e-60 244.0
23 TraesCS2A01G425700 chr3D 77.542 236 27 16 510 737 550421885 550422102 1.360000e-22 119.0
24 TraesCS2A01G425700 chr4B 91.860 172 14 0 4752 4923 135218214 135218043 2.790000e-59 241.0
25 TraesCS2A01G425700 chr1A 90.556 180 13 4 4749 4924 566481178 566480999 1.300000e-57 235.0
26 TraesCS2A01G425700 chr3A 88.304 171 17 3 279 447 710896102 710895933 1.310000e-47 202.0
27 TraesCS2A01G425700 chr1B 85.294 170 24 1 279 447 596164184 596164353 2.870000e-39 174.0
28 TraesCS2A01G425700 chr5D 85.207 169 23 2 279 445 556874774 556874606 1.030000e-38 172.0
29 TraesCS2A01G425700 chr4A 85.380 171 18 6 279 447 611522070 611521905 3.710000e-38 171.0
30 TraesCS2A01G425700 chr3B 78.603 229 36 8 515 737 710830737 710830516 1.050000e-28 139.0
31 TraesCS2A01G425700 chr5B 79.870 154 22 6 580 732 664693805 664693660 3.810000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G425700 chr2A 679502814 679510540 7726 False 14270.000000 14270 100.000000 1 7727 1 chr2A.!!$F1 7726
1 TraesCS2A01G425700 chr2B 638962694 638969355 6661 False 3105.000000 5589 89.755333 1060 7727 3 chr2B.!!$F1 6667
2 TraesCS2A01G425700 chr2D 536912129 536919862 7733 False 3531.666667 4785 91.520333 1 7726 3 chr2D.!!$F1 7725

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
237 238 0.104855 TCCGGCGAAATCAGATCCTG 59.895 55.000 9.30 0.0 0.0 3.86 F
1166 1213 0.036010 AGTTCCATCTCGCACAAGGG 60.036 55.000 0.00 0.0 0.0 3.95 F
2329 2584 0.808125 GTGGCGATGTTAATGCACCA 59.192 50.000 0.00 0.0 0.0 4.17 F
2886 3141 1.679032 GCCCATGGAAGGTAGTGACAC 60.679 57.143 15.22 0.0 0.0 3.67 F
4372 4628 1.031235 TGTTGTCATGCTGGTTGTGG 58.969 50.000 0.00 0.0 0.0 4.17 F
5886 6162 1.831343 CGGCATGCTAAATGAACTGC 58.169 50.000 18.92 0.0 0.0 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1951 2202 0.731417 CAAGATGCCTGCTCTTTCCG 59.269 55.000 2.46 0.00 30.60 4.30 R
2980 3235 1.343142 TCAGTAGTTGAAGCGGCTTCA 59.657 47.619 34.77 34.77 46.93 3.02 R
4235 4491 0.248255 TCGCAGCGAGATCTTCTTCG 60.248 55.000 15.11 4.25 0.00 3.79 R
4453 4728 0.035458 ACAAGAAGTGAAGAGGGGCG 59.965 55.000 0.00 0.00 0.00 6.13 R
5905 6181 0.106868 TCAGAGCATGCCCATCCAAG 60.107 55.000 15.66 0.00 0.00 3.61 R
6871 7154 0.112412 TTCTCCTTTTCCCCAGCACC 59.888 55.000 0.00 0.00 0.00 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
104 105 5.097742 TGATGTTGACGATCCAAGGTAAT 57.902 39.130 0.00 0.00 0.00 1.89
109 110 1.766496 GACGATCCAAGGTAATCCCCA 59.234 52.381 0.00 0.00 0.00 4.96
118 119 5.732170 TCCAAGGTAATCCCCATACAAGTTA 59.268 40.000 0.00 0.00 0.00 2.24
129 130 5.297527 CCCCATACAAGTTATTTACCGTTCC 59.702 44.000 0.00 0.00 0.00 3.62
133 134 4.630111 ACAAGTTATTTACCGTTCCGTGA 58.370 39.130 0.00 0.00 0.00 4.35
202 203 2.625737 GATAGAGCTTCACTGCTTGCA 58.374 47.619 0.00 0.00 44.17 4.08
205 206 2.236766 AGAGCTTCACTGCTTGCATTT 58.763 42.857 0.00 0.00 44.17 2.32
221 222 2.223433 GCATTTGCTTCAAGGATCTCCG 60.223 50.000 0.00 0.00 38.50 4.63
234 235 2.333014 GATCTCCGGCGAAATCAGATC 58.667 52.381 9.30 11.99 34.36 2.75
235 236 0.389391 TCTCCGGCGAAATCAGATCC 59.611 55.000 9.30 0.00 0.00 3.36
236 237 0.390860 CTCCGGCGAAATCAGATCCT 59.609 55.000 9.30 0.00 0.00 3.24
237 238 0.104855 TCCGGCGAAATCAGATCCTG 59.895 55.000 9.30 0.00 0.00 3.86
238 239 0.104855 CCGGCGAAATCAGATCCTGA 59.895 55.000 9.30 0.00 44.99 3.86
239 240 1.473257 CCGGCGAAATCAGATCCTGAA 60.473 52.381 9.30 0.00 44.04 3.02
240 241 1.594862 CGGCGAAATCAGATCCTGAAC 59.405 52.381 0.00 0.00 44.04 3.18
241 242 2.739932 CGGCGAAATCAGATCCTGAACT 60.740 50.000 0.00 0.00 44.04 3.01
242 243 3.490933 CGGCGAAATCAGATCCTGAACTA 60.491 47.826 0.00 0.00 44.04 2.24
243 244 3.804873 GGCGAAATCAGATCCTGAACTAC 59.195 47.826 0.43 0.00 44.04 2.73
244 245 4.433615 GCGAAATCAGATCCTGAACTACA 58.566 43.478 0.43 0.00 44.04 2.74
245 246 4.505922 GCGAAATCAGATCCTGAACTACAG 59.494 45.833 0.43 0.00 44.04 2.74
246 247 5.655488 CGAAATCAGATCCTGAACTACAGT 58.345 41.667 0.43 0.00 44.04 3.55
247 248 5.746245 CGAAATCAGATCCTGAACTACAGTC 59.254 44.000 0.43 0.00 44.04 3.51
248 249 6.611613 AAATCAGATCCTGAACTACAGTCA 57.388 37.500 0.43 0.00 44.04 3.41
255 256 2.417719 CTGAACTACAGTCACCAAGGC 58.582 52.381 0.00 0.00 41.30 4.35
257 258 2.143925 GAACTACAGTCACCAAGGCAC 58.856 52.381 0.00 0.00 0.00 5.01
293 309 9.814899 AACATGTTTCATTTGTTTGAGACAATA 57.185 25.926 4.92 0.00 46.99 1.90
350 367 4.536090 ACAGGGATGAAAGTAAGATCACCA 59.464 41.667 0.00 0.00 0.00 4.17
351 368 5.121811 CAGGGATGAAAGTAAGATCACCAG 58.878 45.833 0.00 0.00 0.00 4.00
352 369 4.164988 AGGGATGAAAGTAAGATCACCAGG 59.835 45.833 0.00 0.00 0.00 4.45
357 374 6.126863 TGAAAGTAAGATCACCAGGATTGT 57.873 37.500 0.00 0.00 36.00 2.71
378 395 1.883275 CTAACCAAACATGACGGGCAA 59.117 47.619 0.00 0.00 0.00 4.52
448 466 7.500992 TCGAGCTCCTAAATTCATGACTAATT 58.499 34.615 8.47 0.00 0.00 1.40
490 508 2.291411 GGACCTCCTATATGGCGACCTA 60.291 54.545 0.00 0.00 35.26 3.08
491 509 2.754002 GACCTCCTATATGGCGACCTAC 59.246 54.545 0.00 0.00 35.26 3.18
492 510 1.743958 CCTCCTATATGGCGACCTACG 59.256 57.143 0.00 0.00 45.66 3.51
493 511 2.434428 CTCCTATATGGCGACCTACGT 58.566 52.381 0.00 0.00 44.60 3.57
494 512 2.156917 TCCTATATGGCGACCTACGTG 58.843 52.381 0.00 0.00 44.60 4.49
495 513 1.884579 CCTATATGGCGACCTACGTGT 59.115 52.381 0.00 0.00 44.60 4.49
514 532 3.668386 GGAAACCAGTGAAGCCCG 58.332 61.111 0.00 0.00 0.00 6.13
517 535 2.130073 GAAACCAGTGAAGCCCGCAC 62.130 60.000 0.00 0.00 36.53 5.34
557 575 3.731728 ATGAGCCGGCCCATGTGT 61.732 61.111 24.02 1.15 0.00 3.72
679 712 6.890663 AAATGTCCGTGCATTCAATAAATG 57.109 33.333 0.00 0.00 46.37 2.32
722 755 6.644248 TGAGGAAATGATAAATGCTCATGG 57.356 37.500 0.00 0.00 36.74 3.66
740 773 6.292488 GCTCATGGATTCAAAAACTGTTTGTG 60.292 38.462 15.74 15.74 0.00 3.33
744 777 7.769272 TGGATTCAAAAACTGTTTGTGATTC 57.231 32.000 25.83 25.83 0.00 2.52
746 779 6.074356 GGATTCAAAAACTGTTTGTGATTCCG 60.074 38.462 31.51 9.56 32.45 4.30
967 1007 7.066374 TGCCAAATTTTAAATATTGTTCGCC 57.934 32.000 10.71 0.00 0.00 5.54
982 1022 4.225984 TGTTCGCCGATTCAAGAAAAATG 58.774 39.130 0.00 0.00 0.00 2.32
984 1024 4.497473 TCGCCGATTCAAGAAAAATGTT 57.503 36.364 0.00 0.00 0.00 2.71
998 1038 4.316205 AAAATGTTCCCGAGTTCCAAAC 57.684 40.909 0.00 0.00 0.00 2.93
1009 1055 3.120338 CGAGTTCCAAACAATGTACGCAT 60.120 43.478 0.00 0.00 36.80 4.73
1013 1059 6.740110 AGTTCCAAACAATGTACGCATTAAA 58.260 32.000 0.00 0.00 42.91 1.52
1048 1095 0.612744 TACCCCCGTTTTTACCCGAG 59.387 55.000 0.00 0.00 0.00 4.63
1166 1213 0.036010 AGTTCCATCTCGCACAAGGG 60.036 55.000 0.00 0.00 0.00 3.95
1309 1359 2.771688 CCTCATCCCCAAACCCTACTA 58.228 52.381 0.00 0.00 0.00 1.82
1374 1425 2.742372 GCGGACGCCATGTGAGTT 60.742 61.111 5.20 0.00 34.56 3.01
1462 1513 2.754552 GCCTGGTGCTTGATTTGACATA 59.245 45.455 0.00 0.00 36.87 2.29
1605 1656 3.628646 AAGTAAGCGCCTGGCCTGG 62.629 63.158 23.89 23.89 45.17 4.45
1672 1737 7.253684 GGTTAGAATCGAACGACTAGATTTGTG 60.254 40.741 0.00 0.00 35.06 3.33
1726 1812 4.095932 CGGAAAGTTAGTAGGGAAAATGGC 59.904 45.833 0.00 0.00 0.00 4.40
1762 1848 5.923204 ACAAGAGAGTCAACATCTCACTTT 58.077 37.500 5.81 0.00 44.68 2.66
1769 1855 7.675062 AGAGTCAACATCTCACTTTTGTATCT 58.325 34.615 0.00 0.00 34.73 1.98
1864 2115 1.308998 CCTGACTTGAACCACACCAC 58.691 55.000 0.00 0.00 0.00 4.16
1878 2129 3.271014 CCACATGTGGCTGTCTGC 58.729 61.111 31.13 0.00 44.73 4.26
1917 2168 5.500234 TGCATTTGTAGCCTGAAGACTATT 58.500 37.500 0.00 0.00 0.00 1.73
1932 2183 9.214953 CTGAAGACTATTTGTAAATTGATTCGC 57.785 33.333 5.93 0.00 31.11 4.70
1951 2202 3.400505 GCTTTGCGTGTTTATAGGGAC 57.599 47.619 0.00 0.00 0.00 4.46
2157 2412 5.237344 GCTTGTAGGCGATTGAATGATACTT 59.763 40.000 0.00 0.00 0.00 2.24
2275 2530 2.857483 TGGAGTCGCCATTCTTTGAAA 58.143 42.857 0.00 0.00 43.33 2.69
2303 2558 7.995488 AGCCAGAATATAATGCTAAAGACAAGT 59.005 33.333 0.00 0.00 0.00 3.16
2329 2584 0.808125 GTGGCGATGTTAATGCACCA 59.192 50.000 0.00 0.00 0.00 4.17
2337 2592 4.154015 CGATGTTAATGCACCACTGAAGAA 59.846 41.667 0.00 0.00 0.00 2.52
2618 2873 4.686191 ACAAATGATTTGCCCTCACAAA 57.314 36.364 17.19 0.00 44.39 2.83
2635 2890 4.581824 TCACAAAATGCTTCAGAGAAGCTT 59.418 37.500 26.26 19.61 43.38 3.74
2744 2999 6.289064 TCTGATGATGAAGATTCTGGTGATG 58.711 40.000 0.00 0.00 0.00 3.07
2794 3049 5.357314 AGAACCATCTGATGAATTGCTTGAG 59.643 40.000 18.92 0.94 33.59 3.02
2886 3141 1.679032 GCCCATGGAAGGTAGTGACAC 60.679 57.143 15.22 0.00 0.00 3.67
2893 3148 2.547218 GGAAGGTAGTGACACGCAAGAA 60.547 50.000 0.00 0.00 43.62 2.52
3082 3338 6.790285 ACTACGTATGTTTTTACTTGGTGG 57.210 37.500 0.00 0.00 0.00 4.61
3332 3588 3.955471 TGGCTAGCAGCTTTGTTATCTT 58.045 40.909 18.24 0.00 41.99 2.40
3353 3609 3.230976 TCGATGCAGAAGGATAGGCTTA 58.769 45.455 0.00 0.00 0.00 3.09
3354 3610 3.834813 TCGATGCAGAAGGATAGGCTTAT 59.165 43.478 0.00 0.00 0.00 1.73
3355 3611 4.284490 TCGATGCAGAAGGATAGGCTTATT 59.716 41.667 0.00 0.00 0.00 1.40
3356 3612 4.999950 CGATGCAGAAGGATAGGCTTATTT 59.000 41.667 0.00 0.00 0.00 1.40
3357 3613 5.121454 CGATGCAGAAGGATAGGCTTATTTC 59.879 44.000 0.00 0.00 0.00 2.17
3396 3652 8.383175 TCAACTTACAGGAGATTGTTTAATCCT 58.617 33.333 0.00 0.00 42.99 3.24
3397 3653 9.014297 CAACTTACAGGAGATTGTTTAATCCTT 57.986 33.333 0.00 0.00 42.99 3.36
3509 3765 3.325716 ACTTAAGTTTTCAGGGGCGACTA 59.674 43.478 1.12 0.00 0.00 2.59
3510 3766 4.019591 ACTTAAGTTTTCAGGGGCGACTAT 60.020 41.667 1.12 0.00 0.00 2.12
3573 3829 9.670719 CATTTGAGTAAGAAAAGAAGTTCCTTC 57.329 33.333 0.00 3.39 40.45 3.46
3590 3846 2.951642 CCTTCTGTGCTGTTTCCTTTCA 59.048 45.455 0.00 0.00 0.00 2.69
3594 3850 3.953612 TCTGTGCTGTTTCCTTTCATTGT 59.046 39.130 0.00 0.00 0.00 2.71
3814 4070 4.739195 TGAGTACTGGTTTTTGTTTGTGC 58.261 39.130 0.00 0.00 0.00 4.57
3827 4083 2.495270 TGTTTGTGCCAACTCAACATGT 59.505 40.909 0.00 0.00 30.05 3.21
3828 4084 3.115554 GTTTGTGCCAACTCAACATGTC 58.884 45.455 0.00 0.00 0.00 3.06
3837 4093 5.106869 GCCAACTCAACATGTCGTTTATGTA 60.107 40.000 0.00 0.00 37.77 2.29
3838 4094 6.304126 CCAACTCAACATGTCGTTTATGTAC 58.696 40.000 0.00 0.00 37.77 2.90
3849 4105 6.950545 TGTCGTTTATGTACTTTTGTTGAGG 58.049 36.000 0.00 0.00 0.00 3.86
3870 4126 6.128391 TGAGGCAATTGTCGTTTATGTACTTC 60.128 38.462 7.40 0.00 0.00 3.01
3874 4130 6.736853 GCAATTGTCGTTTATGTACTTCTGTC 59.263 38.462 7.40 0.00 0.00 3.51
3877 4133 5.388111 TGTCGTTTATGTACTTCTGTCGAG 58.612 41.667 0.00 0.00 0.00 4.04
3913 4169 7.030768 TGCAAATCACATGATATTGTTGTCAG 58.969 34.615 0.00 0.00 33.73 3.51
3987 4243 9.997189 CAACTGATTGAAGCAATTGCGTTTGTG 62.997 40.741 24.02 13.55 41.45 3.33
4034 4290 7.041712 GCAAGGAAGAATGGTATAAGTAAGAGC 60.042 40.741 0.00 0.00 0.00 4.09
4328 4584 2.572191 TCGCCTTGGTATGTTCTACG 57.428 50.000 0.00 0.00 0.00 3.51
4345 4601 7.583230 TGTTCTACGTTTTACTTGTGTTGTTT 58.417 30.769 0.00 0.00 0.00 2.83
4372 4628 1.031235 TGTTGTCATGCTGGTTGTGG 58.969 50.000 0.00 0.00 0.00 4.17
4453 4728 2.113860 TTGCCACCTGAGCTGATAAC 57.886 50.000 0.00 0.00 0.00 1.89
4648 4923 7.561021 TCACAAAGTTTGCACTCTGTATTAA 57.439 32.000 15.59 0.00 31.29 1.40
4719 4994 7.693952 AGTAAAGTAATGCAACGAATGGTATG 58.306 34.615 0.00 0.00 0.00 2.39
4726 5001 2.351726 GCAACGAATGGTATGTCTGACC 59.648 50.000 5.17 0.00 37.49 4.02
4757 5032 9.722184 ATTAGGAAGGTTCTCTTTAGTTTGTAC 57.278 33.333 0.00 0.00 35.50 2.90
4758 5033 7.376335 AGGAAGGTTCTCTTTAGTTTGTACT 57.624 36.000 0.00 0.00 35.50 2.73
4759 5034 7.443477 AGGAAGGTTCTCTTTAGTTTGTACTC 58.557 38.462 0.00 0.00 35.50 2.59
4760 5035 6.649973 GGAAGGTTCTCTTTAGTTTGTACTCC 59.350 42.308 0.00 0.00 35.50 3.85
4761 5036 6.997942 AGGTTCTCTTTAGTTTGTACTCCT 57.002 37.500 0.00 0.00 35.78 3.69
4762 5037 7.376335 AGGTTCTCTTTAGTTTGTACTCCTT 57.624 36.000 0.00 0.00 35.78 3.36
4763 5038 7.443477 AGGTTCTCTTTAGTTTGTACTCCTTC 58.557 38.462 0.00 0.00 35.78 3.46
4764 5039 6.649973 GGTTCTCTTTAGTTTGTACTCCTTCC 59.350 42.308 0.00 0.00 35.78 3.46
4765 5040 6.022163 TCTCTTTAGTTTGTACTCCTTCCG 57.978 41.667 0.00 0.00 35.78 4.30
4766 5041 5.771666 TCTCTTTAGTTTGTACTCCTTCCGA 59.228 40.000 0.00 0.00 35.78 4.55
4767 5042 6.436532 TCTCTTTAGTTTGTACTCCTTCCGAT 59.563 38.462 0.00 0.00 35.78 4.18
4768 5043 6.628185 TCTTTAGTTTGTACTCCTTCCGATC 58.372 40.000 0.00 0.00 35.78 3.69
4769 5044 3.889520 AGTTTGTACTCCTTCCGATCC 57.110 47.619 0.00 0.00 0.00 3.36
4770 5045 3.442076 AGTTTGTACTCCTTCCGATCCT 58.558 45.455 0.00 0.00 0.00 3.24
4771 5046 4.607239 AGTTTGTACTCCTTCCGATCCTA 58.393 43.478 0.00 0.00 0.00 2.94
4772 5047 5.021458 AGTTTGTACTCCTTCCGATCCTAA 58.979 41.667 0.00 0.00 0.00 2.69
4773 5048 5.482878 AGTTTGTACTCCTTCCGATCCTAAA 59.517 40.000 0.00 0.00 0.00 1.85
4774 5049 6.156429 AGTTTGTACTCCTTCCGATCCTAAAT 59.844 38.462 0.00 0.00 0.00 1.40
4775 5050 7.343833 AGTTTGTACTCCTTCCGATCCTAAATA 59.656 37.037 0.00 0.00 0.00 1.40
4776 5051 7.850935 TTGTACTCCTTCCGATCCTAAATAT 57.149 36.000 0.00 0.00 0.00 1.28
4777 5052 8.945195 TTGTACTCCTTCCGATCCTAAATATA 57.055 34.615 0.00 0.00 0.00 0.86
4778 5053 8.945195 TGTACTCCTTCCGATCCTAAATATAA 57.055 34.615 0.00 0.00 0.00 0.98
4779 5054 9.021807 TGTACTCCTTCCGATCCTAAATATAAG 57.978 37.037 0.00 0.00 0.00 1.73
4780 5055 9.022884 GTACTCCTTCCGATCCTAAATATAAGT 57.977 37.037 0.00 0.00 0.00 2.24
4781 5056 8.124808 ACTCCTTCCGATCCTAAATATAAGTC 57.875 38.462 0.00 0.00 0.00 3.01
4782 5057 7.951245 ACTCCTTCCGATCCTAAATATAAGTCT 59.049 37.037 0.00 0.00 0.00 3.24
4783 5058 8.722622 TCCTTCCGATCCTAAATATAAGTCTT 57.277 34.615 0.00 0.00 0.00 3.01
4784 5059 9.155785 TCCTTCCGATCCTAAATATAAGTCTTT 57.844 33.333 0.00 0.00 0.00 2.52
4785 5060 9.780186 CCTTCCGATCCTAAATATAAGTCTTTT 57.220 33.333 0.00 0.00 0.00 2.27
4803 5078 9.720769 AAGTCTTTTTAGAGATTCCAATACGAA 57.279 29.630 0.00 0.00 0.00 3.85
4804 5079 9.152595 AGTCTTTTTAGAGATTCCAATACGAAC 57.847 33.333 0.00 0.00 0.00 3.95
4805 5080 9.152595 GTCTTTTTAGAGATTCCAATACGAACT 57.847 33.333 0.00 0.00 0.00 3.01
4812 5087 7.361127 AGAGATTCCAATACGAACTATGTACG 58.639 38.462 0.00 0.00 0.00 3.67
4813 5088 6.444633 AGATTCCAATACGAACTATGTACGG 58.555 40.000 0.00 0.00 0.00 4.02
4814 5089 5.833406 TTCCAATACGAACTATGTACGGA 57.167 39.130 0.00 0.00 0.00 4.69
4815 5090 6.395426 TTCCAATACGAACTATGTACGGAT 57.605 37.500 0.00 0.00 30.83 4.18
4816 5091 5.765176 TCCAATACGAACTATGTACGGATG 58.235 41.667 0.00 0.00 30.78 3.51
4817 5092 5.300034 TCCAATACGAACTATGTACGGATGT 59.700 40.000 0.00 0.00 30.78 3.06
4818 5093 6.486320 TCCAATACGAACTATGTACGGATGTA 59.514 38.462 0.00 0.00 30.78 2.29
4819 5094 7.175467 TCCAATACGAACTATGTACGGATGTAT 59.825 37.037 0.00 0.00 30.78 2.29
4820 5095 8.453320 CCAATACGAACTATGTACGGATGTATA 58.547 37.037 0.00 0.00 30.78 1.47
4821 5096 9.999009 CAATACGAACTATGTACGGATGTATAT 57.001 33.333 0.00 0.00 36.50 0.86
4825 5100 9.831737 ACGAACTATGTACGGATGTATATAAAC 57.168 33.333 0.00 0.00 35.18 2.01
4826 5101 9.830294 CGAACTATGTACGGATGTATATAAACA 57.170 33.333 0.00 0.00 35.18 2.83
4858 5133 6.734104 AGTGTAGATTCACTCATTTTGCTC 57.266 37.500 0.00 0.00 44.07 4.26
4859 5134 6.233434 AGTGTAGATTCACTCATTTTGCTCA 58.767 36.000 0.00 0.00 44.07 4.26
4860 5135 6.712095 AGTGTAGATTCACTCATTTTGCTCAA 59.288 34.615 0.00 0.00 44.07 3.02
4861 5136 7.392673 AGTGTAGATTCACTCATTTTGCTCAAT 59.607 33.333 0.00 0.00 44.07 2.57
4862 5137 8.668353 GTGTAGATTCACTCATTTTGCTCAATA 58.332 33.333 0.00 0.00 35.68 1.90
4863 5138 9.399797 TGTAGATTCACTCATTTTGCTCAATAT 57.600 29.630 0.00 0.00 0.00 1.28
4864 5139 9.661187 GTAGATTCACTCATTTTGCTCAATATG 57.339 33.333 6.68 6.68 33.10 1.78
4865 5140 8.289939 AGATTCACTCATTTTGCTCAATATGT 57.710 30.769 11.05 0.00 33.43 2.29
4866 5141 9.399797 AGATTCACTCATTTTGCTCAATATGTA 57.600 29.630 11.05 1.52 33.43 2.29
4867 5142 9.661187 GATTCACTCATTTTGCTCAATATGTAG 57.339 33.333 11.05 9.86 33.43 2.74
4868 5143 8.565896 TTCACTCATTTTGCTCAATATGTAGT 57.434 30.769 11.05 10.29 33.43 2.73
4869 5144 8.201554 TCACTCATTTTGCTCAATATGTAGTC 57.798 34.615 11.05 0.00 33.43 2.59
4870 5145 7.280876 TCACTCATTTTGCTCAATATGTAGTCC 59.719 37.037 11.05 0.00 33.43 3.85
4871 5146 7.066163 CACTCATTTTGCTCAATATGTAGTCCA 59.934 37.037 11.05 0.00 33.43 4.02
4872 5147 7.776969 ACTCATTTTGCTCAATATGTAGTCCAT 59.223 33.333 11.05 0.00 37.58 3.41
4873 5148 9.276590 CTCATTTTGCTCAATATGTAGTCCATA 57.723 33.333 11.05 0.00 40.27 2.74
4874 5149 9.797642 TCATTTTGCTCAATATGTAGTCCATAT 57.202 29.630 11.05 0.00 46.52 1.78
4911 5186 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
4912 5187 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
4913 5188 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
4914 5189 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
4915 5190 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
4916 5191 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
4932 5207 8.202137 CGGAGGGAGTATATTCTTAAAAACTCA 58.798 37.037 0.00 0.00 36.03 3.41
4978 5254 9.804977 AATTCTGCTATGGAGATATTTTAAGCT 57.195 29.630 0.00 0.00 0.00 3.74
5191 5467 6.442541 TTTTATCTCCTACCTCAACAACCA 57.557 37.500 0.00 0.00 0.00 3.67
5214 5490 5.934935 TGGAAGAAGACGAAACAAATACC 57.065 39.130 0.00 0.00 0.00 2.73
5326 5602 3.070018 TGCAGCTTTCTCTAACTCTTGC 58.930 45.455 0.00 0.00 0.00 4.01
5337 5613 7.484035 TCTCTAACTCTTGCTTTCTTGTTTC 57.516 36.000 0.00 0.00 0.00 2.78
5369 5645 8.893219 CTCATGAGGAGCATTTGTTATACTTA 57.107 34.615 15.38 0.00 36.69 2.24
5387 5663 5.091261 ACTTAGCCTTCTCCATTGTACAG 57.909 43.478 0.00 0.00 0.00 2.74
5462 5738 7.979444 TGGGCTATTACAATCTTAGTAATGC 57.021 36.000 8.40 9.17 41.06 3.56
5473 5749 5.794687 TCTTAGTAATGCACCATTGTTCG 57.205 39.130 0.00 0.00 35.54 3.95
5611 5887 9.831737 GTATGGACATGCTTATGAATATCAAAC 57.168 33.333 0.00 0.00 0.00 2.93
5622 5898 5.895636 TGAATATCAAACGCATTCTTGGT 57.104 34.783 0.00 0.00 31.37 3.67
5652 5928 7.387948 CCCACTATCTTAATTCTTTACCCATCG 59.612 40.741 0.00 0.00 0.00 3.84
5659 5935 8.517056 TCTTAATTCTTTACCCATCGTTTTTCC 58.483 33.333 0.00 0.00 0.00 3.13
5886 6162 1.831343 CGGCATGCTAAATGAACTGC 58.169 50.000 18.92 0.00 0.00 4.40
5905 6181 1.929169 GCGTGTTAATAGGGAACGGTC 59.071 52.381 0.00 0.00 34.91 4.79
6055 6331 5.418840 TGAAAAGGACCTGAGGCAATTATTC 59.581 40.000 0.00 0.00 0.00 1.75
6483 6763 0.752658 TGGCCGACATCTGGTATGAG 59.247 55.000 0.00 0.00 0.00 2.90
6517 6797 1.492176 AGATCACACCCCCTATGCTTG 59.508 52.381 0.00 0.00 0.00 4.01
6519 6799 0.618458 TCACACCCCCTATGCTTGAC 59.382 55.000 0.00 0.00 0.00 3.18
6536 6816 2.412870 TGACGAACCAACTGCAGTATG 58.587 47.619 22.01 18.93 40.87 2.39
6708 6988 2.994578 GGACGAAGGCTCTGTTAAGTTC 59.005 50.000 0.00 0.00 0.00 3.01
6746 7026 7.770897 AGAATGATAATGTTCTGGAGGTAACAC 59.229 37.037 0.00 0.00 38.35 3.32
6758 7038 1.073284 AGGTAACACCAGGCGTCAAAT 59.927 47.619 0.00 0.00 41.95 2.32
6798 7081 9.462174 GTATATGATAGCATCACTCATCTAAGC 57.538 37.037 0.00 0.00 43.01 3.09
6803 7086 2.402305 CATCACTCATCTAAGCCGAGC 58.598 52.381 0.00 0.00 0.00 5.03
6812 7095 2.299521 TCTAAGCCGAGCCTCTTCTAC 58.700 52.381 0.00 0.00 0.00 2.59
6823 7106 4.164204 AGCCTCTTCTACCTTCTCTTGTT 58.836 43.478 0.00 0.00 0.00 2.83
6825 7108 4.932799 GCCTCTTCTACCTTCTCTTGTTTC 59.067 45.833 0.00 0.00 0.00 2.78
6843 7126 0.181587 TCTTTCGGGTTGTCCAAGCA 59.818 50.000 10.95 0.00 40.33 3.91
6848 7131 0.673437 CGGGTTGTCCAAGCATTTGT 59.327 50.000 10.95 0.00 40.33 2.83
6856 7139 6.481644 GGTTGTCCAAGCATTTGTTTTTATCA 59.518 34.615 4.45 0.00 38.57 2.15
6864 7147 4.388469 GCATTTGTTTTTATCATGCCGTGT 59.612 37.500 0.00 0.00 0.00 4.49
6865 7148 5.444481 GCATTTGTTTTTATCATGCCGTGTC 60.444 40.000 0.00 0.00 0.00 3.67
6871 7154 1.355005 TATCATGCCGTGTCGTGTTG 58.645 50.000 0.00 0.00 0.00 3.33
6872 7155 1.298157 ATCATGCCGTGTCGTGTTGG 61.298 55.000 0.00 0.00 0.00 3.77
6873 7156 2.110213 ATGCCGTGTCGTGTTGGT 59.890 55.556 0.00 0.00 0.00 3.67
6876 7159 2.587753 CCGTGTCGTGTTGGTGCT 60.588 61.111 0.00 0.00 0.00 4.40
6877 7160 2.625906 CGTGTCGTGTTGGTGCTG 59.374 61.111 0.00 0.00 0.00 4.41
6880 7164 2.978010 GTCGTGTTGGTGCTGGGG 60.978 66.667 0.00 0.00 0.00 4.96
6885 7169 0.389025 GTGTTGGTGCTGGGGAAAAG 59.611 55.000 0.00 0.00 0.00 2.27
6897 7181 0.453390 GGGAAAAGGAGAATGCAGCG 59.547 55.000 0.00 0.00 0.00 5.18
6898 7182 0.453390 GGAAAAGGAGAATGCAGCGG 59.547 55.000 0.00 0.00 0.00 5.52
6916 7200 1.330521 CGGCTCGTATGTGGAAAATGG 59.669 52.381 0.00 0.00 0.00 3.16
6919 7203 3.442273 GGCTCGTATGTGGAAAATGGAAA 59.558 43.478 0.00 0.00 0.00 3.13
7000 7289 6.788684 TTGATGCCACAAAATCAGAAAATG 57.211 33.333 0.00 0.00 34.43 2.32
7005 7294 3.998341 CCACAAAATCAGAAAATGGCCTG 59.002 43.478 3.32 0.00 0.00 4.85
7008 7297 3.967332 AAATCAGAAAATGGCCTGGTG 57.033 42.857 3.32 0.00 0.00 4.17
7020 7309 0.312102 GCCTGGTGTTCTGCTTGTTC 59.688 55.000 0.00 0.00 0.00 3.18
7041 7330 8.703604 TGTTCAGCTCTATAACAAATCTGTAC 57.296 34.615 0.00 0.00 33.45 2.90
7044 7333 7.492524 TCAGCTCTATAACAAATCTGTACCAG 58.507 38.462 0.00 0.00 33.45 4.00
7064 7356 1.669779 GCAGCAGCTATTCTTGTCCAG 59.330 52.381 0.00 0.00 37.91 3.86
7065 7357 1.669779 CAGCAGCTATTCTTGTCCAGC 59.330 52.381 0.00 0.00 0.00 4.85
7066 7358 1.020437 GCAGCTATTCTTGTCCAGCC 58.980 55.000 0.00 0.00 34.49 4.85
7067 7359 1.407989 GCAGCTATTCTTGTCCAGCCT 60.408 52.381 0.00 0.00 34.49 4.58
7068 7360 2.286872 CAGCTATTCTTGTCCAGCCTG 58.713 52.381 0.00 0.00 34.49 4.85
7069 7361 1.020437 GCTATTCTTGTCCAGCCTGC 58.980 55.000 0.00 0.00 0.00 4.85
7071 7363 2.286872 CTATTCTTGTCCAGCCTGCAG 58.713 52.381 6.78 6.78 0.00 4.41
7073 7365 0.535780 TTCTTGTCCAGCCTGCAGTG 60.536 55.000 13.81 5.06 0.00 3.66
7145 7569 6.262601 GCTATGTGCAAACCGTATTATGTTT 58.737 36.000 0.00 0.00 42.31 2.83
7147 7571 7.044314 GCTATGTGCAAACCGTATTATGTTTTC 60.044 37.037 0.00 0.00 42.31 2.29
7151 7580 5.410746 TGCAAACCGTATTATGTTTTCCGTA 59.589 36.000 0.00 0.00 32.60 4.02
7156 7585 5.916883 ACCGTATTATGTTTTCCGTATCGAG 59.083 40.000 0.00 0.00 0.00 4.04
7217 7650 0.394080 AATGCAAGAGCTCCTGCCTC 60.394 55.000 29.71 7.99 42.74 4.70
7218 7651 1.273269 ATGCAAGAGCTCCTGCCTCT 61.273 55.000 29.71 14.75 42.74 3.69
7246 7679 5.183228 TGTCAGGTAAAGCTATAAGCAACC 58.817 41.667 1.22 5.94 45.56 3.77
7263 7696 1.237285 ACCTCTTTCATGTGCGCCAC 61.237 55.000 4.18 3.72 34.56 5.01
7274 7708 0.098728 GTGCGCCACATGGTATTCAC 59.901 55.000 4.18 0.00 37.57 3.18
7292 7726 9.353999 GGTATTCACCATTTGTTTGAATTCTAC 57.646 33.333 7.05 5.75 45.04 2.59
7315 7749 2.086869 TGAAATCTTACAGCTGCCTGC 58.913 47.619 15.27 0.00 43.02 4.85
7318 7752 1.747709 ATCTTACAGCTGCCTGCAAG 58.252 50.000 15.27 9.63 45.94 4.01
7324 7758 1.015109 CAGCTGCCTGCAAGTATGAG 58.985 55.000 0.00 0.00 45.94 2.90
7325 7759 0.747283 AGCTGCCTGCAAGTATGAGC 60.747 55.000 0.00 0.00 45.94 4.26
7330 7764 3.208594 TGCCTGCAAGTATGAGCAATAG 58.791 45.455 0.00 0.00 40.73 1.73
7374 7811 5.804639 ACAGCACTAATAATCAACACCTGA 58.195 37.500 0.00 0.00 38.81 3.86
7376 7813 6.886459 ACAGCACTAATAATCAACACCTGAAT 59.114 34.615 0.00 0.00 37.67 2.57
7377 7814 7.394359 ACAGCACTAATAATCAACACCTGAATT 59.606 33.333 0.00 0.00 37.67 2.17
7378 7815 8.246180 CAGCACTAATAATCAACACCTGAATTT 58.754 33.333 0.00 0.00 37.67 1.82
7379 7816 8.462016 AGCACTAATAATCAACACCTGAATTTC 58.538 33.333 0.00 0.00 37.67 2.17
7380 7817 8.243426 GCACTAATAATCAACACCTGAATTTCA 58.757 33.333 0.00 0.00 37.67 2.69
7381 7818 9.559958 CACTAATAATCAACACCTGAATTTCAC 57.440 33.333 0.00 0.00 37.67 3.18
7382 7819 9.520515 ACTAATAATCAACACCTGAATTTCACT 57.479 29.630 0.00 0.00 37.67 3.41
7386 7823 5.304686 TCAACACCTGAATTTCACTACCT 57.695 39.130 0.00 0.00 0.00 3.08
7388 7825 5.530915 TCAACACCTGAATTTCACTACCTTG 59.469 40.000 0.00 0.00 0.00 3.61
7390 7827 5.880901 ACACCTGAATTTCACTACCTTGAT 58.119 37.500 0.00 0.00 0.00 2.57
7398 7835 9.098355 TGAATTTCACTACCTTGATAGATTTCG 57.902 33.333 0.00 0.00 0.00 3.46
7407 7844 4.580167 CCTTGATAGATTTCGGATGCCAAA 59.420 41.667 0.00 0.00 0.00 3.28
7408 7845 5.067674 CCTTGATAGATTTCGGATGCCAAAA 59.932 40.000 0.00 0.00 0.00 2.44
7409 7846 5.499139 TGATAGATTTCGGATGCCAAAAC 57.501 39.130 0.00 0.00 0.00 2.43
7410 7847 4.946772 TGATAGATTTCGGATGCCAAAACA 59.053 37.500 0.00 0.00 0.00 2.83
7411 7848 3.855689 AGATTTCGGATGCCAAAACAG 57.144 42.857 0.00 0.00 0.00 3.16
7412 7849 2.493278 AGATTTCGGATGCCAAAACAGG 59.507 45.455 0.00 0.00 0.00 4.00
7449 7898 4.768968 GCCATTCATTCATTACCTGGCTAT 59.231 41.667 3.51 0.00 43.34 2.97
7546 7995 3.272334 GACATGATCGCCGCCACC 61.272 66.667 0.00 0.00 0.00 4.61
7585 8034 4.922692 CGCTGCACCAGATTTTTCATTTTA 59.077 37.500 0.00 0.00 32.44 1.52
7611 8060 3.745799 TCGTCAGCAAAGAAATACCCAA 58.254 40.909 0.00 0.00 0.00 4.12
7614 8063 4.176271 GTCAGCAAAGAAATACCCAATGC 58.824 43.478 0.00 0.00 0.00 3.56
7618 8067 4.284234 AGCAAAGAAATACCCAATGCTTGT 59.716 37.500 0.00 0.00 39.44 3.16
7622 8071 7.334171 GCAAAGAAATACCCAATGCTTGTATTT 59.666 33.333 11.06 11.06 43.92 1.40
7623 8072 8.658609 CAAAGAAATACCCAATGCTTGTATTTG 58.341 33.333 14.17 3.61 42.28 2.32
7624 8073 6.340522 AGAAATACCCAATGCTTGTATTTGC 58.659 36.000 14.17 8.83 42.28 3.68
7625 8074 4.670896 ATACCCAATGCTTGTATTTGCC 57.329 40.909 0.00 0.00 0.00 4.52
7626 8075 1.204467 ACCCAATGCTTGTATTTGCCG 59.796 47.619 0.00 0.00 0.00 5.69
7628 8077 2.261345 CCAATGCTTGTATTTGCCGTG 58.739 47.619 0.00 0.00 0.00 4.94
7629 8078 2.352617 CCAATGCTTGTATTTGCCGTGT 60.353 45.455 0.00 0.00 0.00 4.49
7630 8079 2.916716 CAATGCTTGTATTTGCCGTGTC 59.083 45.455 0.00 0.00 0.00 3.67
7631 8080 1.598882 TGCTTGTATTTGCCGTGTCA 58.401 45.000 0.00 0.00 0.00 3.58
7632 8081 2.158559 TGCTTGTATTTGCCGTGTCAT 58.841 42.857 0.00 0.00 0.00 3.06
7633 8082 2.556189 TGCTTGTATTTGCCGTGTCATT 59.444 40.909 0.00 0.00 0.00 2.57
7634 8083 3.171277 GCTTGTATTTGCCGTGTCATTC 58.829 45.455 0.00 0.00 0.00 2.67
7635 8084 3.365868 GCTTGTATTTGCCGTGTCATTCA 60.366 43.478 0.00 0.00 0.00 2.57
7636 8085 4.675146 GCTTGTATTTGCCGTGTCATTCAT 60.675 41.667 0.00 0.00 0.00 2.57
7637 8086 5.384063 TTGTATTTGCCGTGTCATTCATT 57.616 34.783 0.00 0.00 0.00 2.57
7638 8087 4.980590 TGTATTTGCCGTGTCATTCATTC 58.019 39.130 0.00 0.00 0.00 2.67
7657 8106 0.818296 CATTTCGAGACGGAGGAGGT 59.182 55.000 0.00 0.00 0.00 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 3.203716 GGGATTACCTTGGATCGTCAAC 58.796 50.000 0.00 0.00 35.85 3.18
93 94 4.731929 ACTTGTATGGGGATTACCTTGGAT 59.268 41.667 0.00 0.00 40.03 3.41
94 95 4.116113 ACTTGTATGGGGATTACCTTGGA 58.884 43.478 0.00 0.00 40.03 3.53
104 105 5.697082 ACGGTAAATAACTTGTATGGGGA 57.303 39.130 0.00 0.00 0.00 4.81
133 134 6.653320 ACAATGTTATTATTGTGACCGACTGT 59.347 34.615 3.57 0.00 46.44 3.55
202 203 2.648059 CCGGAGATCCTTGAAGCAAAT 58.352 47.619 0.00 0.00 0.00 2.32
205 206 1.221840 GCCGGAGATCCTTGAAGCA 59.778 57.895 5.05 0.00 0.00 3.91
221 222 2.911484 AGTTCAGGATCTGATTTCGCC 58.089 47.619 0.00 0.00 40.39 5.54
236 237 1.765904 TGCCTTGGTGACTGTAGTTCA 59.234 47.619 0.00 0.00 0.00 3.18
237 238 2.143925 GTGCCTTGGTGACTGTAGTTC 58.856 52.381 0.00 0.00 0.00 3.01
238 239 1.202770 GGTGCCTTGGTGACTGTAGTT 60.203 52.381 0.00 0.00 0.00 2.24
239 240 0.396811 GGTGCCTTGGTGACTGTAGT 59.603 55.000 0.00 0.00 0.00 2.73
240 241 0.396435 TGGTGCCTTGGTGACTGTAG 59.604 55.000 0.00 0.00 0.00 2.74
241 242 0.840617 TTGGTGCCTTGGTGACTGTA 59.159 50.000 0.00 0.00 0.00 2.74
242 243 0.466189 CTTGGTGCCTTGGTGACTGT 60.466 55.000 0.00 0.00 0.00 3.55
243 244 0.179020 TCTTGGTGCCTTGGTGACTG 60.179 55.000 0.00 0.00 0.00 3.51
244 245 0.550914 TTCTTGGTGCCTTGGTGACT 59.449 50.000 0.00 0.00 0.00 3.41
245 246 1.398692 TTTCTTGGTGCCTTGGTGAC 58.601 50.000 0.00 0.00 0.00 3.67
246 247 1.754226 GTTTTCTTGGTGCCTTGGTGA 59.246 47.619 0.00 0.00 0.00 4.02
247 248 1.480137 TGTTTTCTTGGTGCCTTGGTG 59.520 47.619 0.00 0.00 0.00 4.17
248 249 1.859302 TGTTTTCTTGGTGCCTTGGT 58.141 45.000 0.00 0.00 0.00 3.67
293 309 4.391830 TGAGTTAATGAAAAGCTTCGCGAT 59.608 37.500 10.88 0.00 33.94 4.58
307 323 7.336679 TCCCTGTAACATTGTGATGAGTTAATG 59.663 37.037 0.00 0.00 36.73 1.90
350 367 4.695455 CGTCATGTTTGGTTAGACAATCCT 59.305 41.667 0.00 0.00 0.00 3.24
351 368 4.142687 CCGTCATGTTTGGTTAGACAATCC 60.143 45.833 0.00 0.00 0.00 3.01
352 369 4.142687 CCCGTCATGTTTGGTTAGACAATC 60.143 45.833 0.00 0.00 0.00 2.67
357 374 1.072489 TGCCCGTCATGTTTGGTTAGA 59.928 47.619 0.00 0.00 0.00 2.10
378 395 0.035630 GCATGCTCTCTCACTTGGGT 60.036 55.000 11.37 0.00 0.00 4.51
448 466 6.278363 GTCCCGAGTATATGCAGTCTTTTAA 58.722 40.000 0.00 0.00 0.00 1.52
455 473 2.240279 GAGGTCCCGAGTATATGCAGT 58.760 52.381 0.00 0.00 0.00 4.40
490 508 0.253610 TTCACTGGTTTCCCACACGT 59.746 50.000 0.00 0.00 35.17 4.49
491 509 0.944386 CTTCACTGGTTTCCCACACG 59.056 55.000 0.00 0.00 35.17 4.49
492 510 0.668535 GCTTCACTGGTTTCCCACAC 59.331 55.000 0.00 0.00 35.17 3.82
493 511 0.467290 GGCTTCACTGGTTTCCCACA 60.467 55.000 0.00 0.00 35.17 4.17
494 512 1.179174 GGGCTTCACTGGTTTCCCAC 61.179 60.000 0.00 0.00 35.17 4.61
495 513 1.152830 GGGCTTCACTGGTTTCCCA 59.847 57.895 0.00 0.00 38.87 4.37
679 712 9.590451 TTCCTCATTATTTTTCAAATCATGAGC 57.410 29.630 19.33 0.00 39.77 4.26
698 731 7.008332 TCCATGAGCATTTATCATTTCCTCAT 58.992 34.615 0.00 0.00 38.65 2.90
722 755 6.695278 TCGGAATCACAAACAGTTTTTGAATC 59.305 34.615 16.87 16.94 33.83 2.52
940 980 9.553418 GCGAACAATATTTAAAATTTGGCAATT 57.447 25.926 0.00 0.00 33.72 2.32
941 981 8.180920 GGCGAACAATATTTAAAATTTGGCAAT 58.819 29.630 0.00 0.00 0.00 3.56
944 984 6.035112 TCGGCGAACAATATTTAAAATTTGGC 59.965 34.615 7.35 9.71 0.00 4.52
947 987 9.360093 TGAATCGGCGAACAATATTTAAAATTT 57.640 25.926 15.93 0.00 0.00 1.82
951 991 7.753659 TCTTGAATCGGCGAACAATATTTAAA 58.246 30.769 24.57 9.26 0.00 1.52
955 995 5.811399 TTCTTGAATCGGCGAACAATATT 57.189 34.783 24.57 11.26 0.00 1.28
957 997 5.614923 TTTTCTTGAATCGGCGAACAATA 57.385 34.783 24.57 18.13 0.00 1.90
965 1005 3.926527 GGGAACATTTTTCTTGAATCGGC 59.073 43.478 0.00 0.00 0.00 5.54
967 1007 5.041951 TCGGGAACATTTTTCTTGAATCG 57.958 39.130 0.00 0.00 0.00 3.34
982 1022 2.621526 ACATTGTTTGGAACTCGGGAAC 59.378 45.455 0.00 0.00 0.00 3.62
984 1024 2.649531 ACATTGTTTGGAACTCGGGA 57.350 45.000 0.00 0.00 0.00 5.14
998 1038 6.658831 CCACTCCTATTTAATGCGTACATTG 58.341 40.000 1.63 0.00 46.08 2.82
1009 1055 5.221702 GGGTAATACGGCCACTCCTATTTAA 60.222 44.000 2.24 0.00 0.00 1.52
1013 1059 2.254508 GGGTAATACGGCCACTCCTAT 58.745 52.381 2.24 0.00 0.00 2.57
1048 1095 3.056328 GCTCGAAGGGGTTGGCAC 61.056 66.667 0.00 0.00 0.00 5.01
1136 1183 1.971357 AGATGGAACTGGGCCGTATAG 59.029 52.381 0.00 0.00 0.00 1.31
1150 1197 1.841302 AAGCCCTTGTGCGAGATGGA 61.841 55.000 0.00 0.00 36.02 3.41
1417 1468 4.406173 ACAGCAGCGAGACGACGG 62.406 66.667 0.00 0.00 0.00 4.79
1611 1676 9.013229 ACATAATATGGTTGAATTCGCACATAT 57.987 29.630 16.48 16.48 34.13 1.78
1644 1709 5.481200 TCTAGTCGTTCGATTCTAACCAG 57.519 43.478 0.00 0.00 0.00 4.00
1726 1812 4.070716 ACTCTCTTGTCCAATTGAAGCTG 58.929 43.478 7.12 0.42 0.00 4.24
1762 1848 6.489700 TGAAGATGCAGGAAACAAAGATACAA 59.510 34.615 0.00 0.00 0.00 2.41
1769 1855 4.405358 AGGTTTGAAGATGCAGGAAACAAA 59.595 37.500 0.00 0.00 0.00 2.83
1878 2129 5.990996 ACAAATGCAATTTCTTTACACCAGG 59.009 36.000 0.00 0.00 44.81 4.45
1879 2130 7.148755 GCTACAAATGCAATTTCTTTACACCAG 60.149 37.037 0.00 0.00 44.81 4.00
1883 2134 6.867816 CAGGCTACAAATGCAATTTCTTTACA 59.132 34.615 0.00 0.00 44.81 2.41
1932 2183 2.350498 CCGTCCCTATAAACACGCAAAG 59.650 50.000 0.00 0.00 0.00 2.77
1951 2202 0.731417 CAAGATGCCTGCTCTTTCCG 59.269 55.000 2.46 0.00 30.60 4.30
2157 2412 1.773635 CCCCATCTCAACCCACCAA 59.226 57.895 0.00 0.00 0.00 3.67
2275 2530 8.752005 TGTCTTTAGCATTATATTCTGGCTTT 57.248 30.769 0.00 0.00 36.10 3.51
2303 2558 3.621268 GCATTAACATCGCCACTGTTAGA 59.379 43.478 0.00 0.00 39.51 2.10
2329 2584 3.795688 TGGCTCTTGGAATTCTTCAGT 57.204 42.857 5.23 0.00 0.00 3.41
2337 2592 3.075134 AGACTTTCCTTGGCTCTTGGAAT 59.925 43.478 0.00 0.00 39.30 3.01
2618 2873 4.826183 AGTTTGAAGCTTCTCTGAAGCATT 59.174 37.500 26.09 19.46 45.30 3.56
2635 2890 6.369340 TGTTGTCTCGTTTACTTTCAGTTTGA 59.631 34.615 0.00 0.00 0.00 2.69
2704 2959 3.808466 TCAGATTCGGAATCAGACCAG 57.192 47.619 27.39 12.75 40.42 4.00
2710 2965 6.165700 TCTTCATCATCAGATTCGGAATCA 57.834 37.500 27.39 12.24 40.42 2.57
2794 3049 3.368739 CCATCTGACCCTTTTCATTTGCC 60.369 47.826 0.00 0.00 0.00 4.52
2886 3141 3.124297 GTCAGAATCTTCCACTTCTTGCG 59.876 47.826 0.00 0.00 29.34 4.85
2893 3148 4.103153 TCTTGGTTGTCAGAATCTTCCACT 59.897 41.667 0.00 0.00 0.00 4.00
2980 3235 1.343142 TCAGTAGTTGAAGCGGCTTCA 59.657 47.619 34.77 34.77 46.93 3.02
3082 3338 7.590322 CACATAAATGCTGATCTGAAGTAATGC 59.410 37.037 3.42 0.00 0.00 3.56
3332 3588 1.709578 AGCCTATCCTTCTGCATCGA 58.290 50.000 0.00 0.00 0.00 3.59
3373 3629 8.383175 TGAAGGATTAAACAATCTCCTGTAAGT 58.617 33.333 0.00 0.00 38.15 2.24
3396 3652 6.239232 GGAGGAAAGTAAGTCTGTACAGTGAA 60.239 42.308 21.99 0.30 0.00 3.18
3397 3653 5.243283 GGAGGAAAGTAAGTCTGTACAGTGA 59.757 44.000 21.99 1.42 0.00 3.41
3447 3703 3.091545 CCCTGCAAACCACATATCAAGT 58.908 45.455 0.00 0.00 0.00 3.16
3500 3756 2.869233 TAACACGTAATAGTCGCCCC 57.131 50.000 0.00 0.00 0.00 5.80
3509 3765 4.393990 GGTTTAGCAGCCTTAACACGTAAT 59.606 41.667 0.00 0.00 33.44 1.89
3510 3766 3.747529 GGTTTAGCAGCCTTAACACGTAA 59.252 43.478 0.00 0.00 33.44 3.18
3573 3829 4.311816 ACAATGAAAGGAAACAGCACAG 57.688 40.909 0.00 0.00 0.00 3.66
3580 3836 4.270808 CACAGCCAAACAATGAAAGGAAAC 59.729 41.667 0.00 0.00 0.00 2.78
3590 3846 5.179742 CACATTATTTGCACAGCCAAACAAT 59.820 36.000 0.00 0.00 37.51 2.71
3594 3850 3.065655 GCACATTATTTGCACAGCCAAA 58.934 40.909 0.00 0.00 39.93 3.28
3708 3964 2.025793 TGTATCCCCGCCAATTTCAGAA 60.026 45.455 0.00 0.00 0.00 3.02
3814 4070 5.356882 ACATAAACGACATGTTGAGTTGG 57.643 39.130 20.26 11.92 40.84 3.77
3827 4083 5.527951 TGCCTCAACAAAAGTACATAAACGA 59.472 36.000 0.00 0.00 0.00 3.85
3828 4084 5.753744 TGCCTCAACAAAAGTACATAAACG 58.246 37.500 0.00 0.00 0.00 3.60
3837 4093 3.130340 ACGACAATTGCCTCAACAAAAGT 59.870 39.130 5.05 0.00 32.27 2.66
3838 4094 3.705604 ACGACAATTGCCTCAACAAAAG 58.294 40.909 5.05 0.00 32.27 2.27
3849 4105 6.599437 ACAGAAGTACATAAACGACAATTGC 58.401 36.000 5.05 0.00 0.00 3.56
3870 4126 7.538334 TGATTTGCAACAATATTTTCTCGACAG 59.462 33.333 0.00 0.00 0.00 3.51
3874 4130 7.565450 TGTGATTTGCAACAATATTTTCTCG 57.435 32.000 0.00 0.00 0.00 4.04
3913 4169 2.100605 AGGAACAGCGAGGAAATGTC 57.899 50.000 0.00 0.00 0.00 3.06
3987 4243 5.992729 TGCTATGTTTTCAACGACCTAAAC 58.007 37.500 0.00 0.00 0.00 2.01
4235 4491 0.248255 TCGCAGCGAGATCTTCTTCG 60.248 55.000 15.11 4.25 0.00 3.79
4310 4566 2.288961 ACGTAGAACATACCAAGGCG 57.711 50.000 0.00 0.00 0.00 5.52
4328 4584 7.631915 AACAGTGAAACAACACAAGTAAAAC 57.368 32.000 0.00 0.00 42.45 2.43
4345 4601 2.358582 CCAGCATGACAACAAACAGTGA 59.641 45.455 0.00 0.00 39.69 3.41
4372 4628 6.258507 CCATAAATAGTTCCAAAAGGCAATGC 59.741 38.462 0.00 0.00 0.00 3.56
4453 4728 0.035458 ACAAGAAGTGAAGAGGGGCG 59.965 55.000 0.00 0.00 0.00 6.13
4648 4923 5.221966 TGGAACCCGATCCCGATTAAATAAT 60.222 40.000 0.00 0.00 38.82 1.28
4652 4927 1.838715 TGGAACCCGATCCCGATTAAA 59.161 47.619 0.00 0.00 38.82 1.52
4658 4933 1.071699 ACATTATGGAACCCGATCCCG 59.928 52.381 0.00 0.00 38.82 5.14
4726 5001 9.508642 AACTAAAGAGAACCTTCCTAATTGAAG 57.491 33.333 0.00 0.00 41.15 3.02
4757 5032 8.356000 AGACTTATATTTAGGATCGGAAGGAG 57.644 38.462 0.00 0.00 0.00 3.69
4758 5033 8.722622 AAGACTTATATTTAGGATCGGAAGGA 57.277 34.615 0.00 0.00 0.00 3.36
4759 5034 9.780186 AAAAGACTTATATTTAGGATCGGAAGG 57.220 33.333 0.00 0.00 0.00 3.46
4777 5052 9.720769 TTCGTATTGGAATCTCTAAAAAGACTT 57.279 29.630 0.00 0.00 0.00 3.01
4778 5053 9.152595 GTTCGTATTGGAATCTCTAAAAAGACT 57.847 33.333 0.00 0.00 0.00 3.24
4779 5054 9.152595 AGTTCGTATTGGAATCTCTAAAAAGAC 57.847 33.333 0.00 0.00 0.00 3.01
4786 5061 8.501580 CGTACATAGTTCGTATTGGAATCTCTA 58.498 37.037 0.00 0.00 0.00 2.43
4787 5062 7.361127 CGTACATAGTTCGTATTGGAATCTCT 58.639 38.462 0.00 0.00 0.00 3.10
4788 5063 6.581542 CCGTACATAGTTCGTATTGGAATCTC 59.418 42.308 0.00 0.00 0.00 2.75
4789 5064 6.263842 TCCGTACATAGTTCGTATTGGAATCT 59.736 38.462 0.00 0.00 0.00 2.40
4790 5065 6.441274 TCCGTACATAGTTCGTATTGGAATC 58.559 40.000 0.00 0.00 0.00 2.52
4791 5066 6.395426 TCCGTACATAGTTCGTATTGGAAT 57.605 37.500 0.00 0.00 0.00 3.01
4792 5067 5.833406 TCCGTACATAGTTCGTATTGGAA 57.167 39.130 0.00 0.00 0.00 3.53
4793 5068 5.300034 ACATCCGTACATAGTTCGTATTGGA 59.700 40.000 0.00 0.00 33.47 3.53
4794 5069 5.526115 ACATCCGTACATAGTTCGTATTGG 58.474 41.667 0.00 0.00 0.00 3.16
4795 5070 9.999009 ATATACATCCGTACATAGTTCGTATTG 57.001 33.333 0.00 0.00 0.00 1.90
4799 5074 9.831737 GTTTATATACATCCGTACATAGTTCGT 57.168 33.333 0.00 0.00 0.00 3.85
4800 5075 9.830294 TGTTTATATACATCCGTACATAGTTCG 57.170 33.333 0.00 0.00 0.00 3.95
4836 5111 6.486253 TGAGCAAAATGAGTGAATCTACAC 57.514 37.500 0.00 0.00 40.60 2.90
4837 5112 7.692460 ATTGAGCAAAATGAGTGAATCTACA 57.308 32.000 0.00 0.00 0.00 2.74
4838 5113 9.661187 CATATTGAGCAAAATGAGTGAATCTAC 57.339 33.333 0.00 0.00 0.00 2.59
4839 5114 9.399797 ACATATTGAGCAAAATGAGTGAATCTA 57.600 29.630 0.00 0.00 0.00 1.98
4840 5115 8.289939 ACATATTGAGCAAAATGAGTGAATCT 57.710 30.769 0.00 0.00 0.00 2.40
4841 5116 9.661187 CTACATATTGAGCAAAATGAGTGAATC 57.339 33.333 0.00 0.00 0.00 2.52
4842 5117 9.182214 ACTACATATTGAGCAAAATGAGTGAAT 57.818 29.630 0.00 0.00 0.00 2.57
4843 5118 8.565896 ACTACATATTGAGCAAAATGAGTGAA 57.434 30.769 0.00 0.00 0.00 3.18
4844 5119 7.280876 GGACTACATATTGAGCAAAATGAGTGA 59.719 37.037 0.00 0.00 0.00 3.41
4845 5120 7.066163 TGGACTACATATTGAGCAAAATGAGTG 59.934 37.037 0.00 0.00 0.00 3.51
4846 5121 7.112122 TGGACTACATATTGAGCAAAATGAGT 58.888 34.615 0.00 0.00 0.00 3.41
4847 5122 7.558161 TGGACTACATATTGAGCAAAATGAG 57.442 36.000 0.00 0.00 0.00 2.90
4885 5160 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
4886 5161 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
4887 5162 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
4888 5163 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
4889 5164 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
4890 5165 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
4891 5166 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
4892 5167 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
4895 5170 8.912614 AATATACTCCCTCCGTTCCTAAATAT 57.087 34.615 0.00 0.00 0.00 1.28
4896 5171 8.175431 AGAATATACTCCCTCCGTTCCTAAATA 58.825 37.037 0.00 0.00 0.00 1.40
4897 5172 7.017531 AGAATATACTCCCTCCGTTCCTAAAT 58.982 38.462 0.00 0.00 0.00 1.40
4898 5173 6.379579 AGAATATACTCCCTCCGTTCCTAAA 58.620 40.000 0.00 0.00 0.00 1.85
4899 5174 5.961897 AGAATATACTCCCTCCGTTCCTAA 58.038 41.667 0.00 0.00 0.00 2.69
4900 5175 5.595814 AGAATATACTCCCTCCGTTCCTA 57.404 43.478 0.00 0.00 0.00 2.94
4901 5176 4.472690 AGAATATACTCCCTCCGTTCCT 57.527 45.455 0.00 0.00 0.00 3.36
4902 5177 6.661304 TTAAGAATATACTCCCTCCGTTCC 57.339 41.667 0.00 0.00 0.00 3.62
4903 5178 8.824781 GTTTTTAAGAATATACTCCCTCCGTTC 58.175 37.037 0.00 0.00 0.00 3.95
4904 5179 8.546322 AGTTTTTAAGAATATACTCCCTCCGTT 58.454 33.333 0.00 0.00 0.00 4.44
4905 5180 8.087303 AGTTTTTAAGAATATACTCCCTCCGT 57.913 34.615 0.00 0.00 0.00 4.69
4906 5181 8.202137 TGAGTTTTTAAGAATATACTCCCTCCG 58.798 37.037 0.00 0.00 32.96 4.63
4932 5207 8.976353 CAGAATTACAGCCTCTGGTATCTATAT 58.024 37.037 0.00 0.00 35.51 0.86
4978 5254 7.168219 ACACTAAAATGAAAGGATGCAGAGTA 58.832 34.615 0.00 0.00 0.00 2.59
5016 5292 7.787725 AATTTCAGAAGATACGATGGGTAAC 57.212 36.000 0.00 0.00 34.09 2.50
5114 5390 4.451900 AGTATCCCTACAATCCAAAAGCG 58.548 43.478 0.00 0.00 0.00 4.68
5191 5467 5.121768 CGGTATTTGTTTCGTCTTCTTCCAT 59.878 40.000 0.00 0.00 0.00 3.41
5214 5490 4.322080 TGTAATAATCCTCTCACCAGCG 57.678 45.455 0.00 0.00 0.00 5.18
5326 5602 8.449397 CCTCATGAGTCATAAGAAACAAGAAAG 58.551 37.037 21.11 0.00 0.00 2.62
5337 5613 5.821470 ACAAATGCTCCTCATGAGTCATAAG 59.179 40.000 21.11 16.26 43.48 1.73
5369 5645 4.851639 AATCTGTACAATGGAGAAGGCT 57.148 40.909 0.00 0.00 0.00 4.58
5462 5738 1.334960 GGACTGCAACGAACAATGGTG 60.335 52.381 0.00 0.00 0.00 4.17
5469 5745 0.389948 AGATCGGGACTGCAACGAAC 60.390 55.000 6.56 4.74 40.27 3.95
5473 5749 2.604046 ATACAGATCGGGACTGCAAC 57.396 50.000 0.00 0.00 38.74 4.17
5622 5898 8.050930 GGGTAAAGAATTAAGATAGTGGGACAA 58.949 37.037 0.00 0.00 44.16 3.18
5652 5928 6.647895 TCACCTAAATAGTGACTCGGAAAAAC 59.352 38.462 0.00 0.00 39.29 2.43
5843 6119 7.359849 CCGCATATCTATATGAGCACATTATGC 60.360 40.741 19.46 19.46 45.69 3.14
5868 6144 1.133025 ACGCAGTTCATTTAGCATGCC 59.867 47.619 15.66 0.00 37.78 4.40
5886 6162 3.515330 AGACCGTTCCCTATTAACACG 57.485 47.619 0.00 0.00 0.00 4.49
5905 6181 0.106868 TCAGAGCATGCCCATCCAAG 60.107 55.000 15.66 0.00 0.00 3.61
6055 6331 0.251297 TCACCTGGCCAAATGGACTG 60.251 55.000 16.13 6.01 45.91 3.51
6192 6472 4.647424 TGTTGCGAGGAGTTGAATTTTT 57.353 36.364 0.00 0.00 0.00 1.94
6196 6476 3.126001 TCTTGTTGCGAGGAGTTGAAT 57.874 42.857 0.00 0.00 0.00 2.57
6483 6763 3.870419 GTGTGATCTTGAATGAGAGAGGC 59.130 47.826 0.00 0.00 0.00 4.70
6517 6797 2.413837 ACATACTGCAGTTGGTTCGTC 58.586 47.619 27.06 0.00 0.00 4.20
6519 6799 2.805671 TCAACATACTGCAGTTGGTTCG 59.194 45.455 27.06 20.17 43.91 3.95
6536 6816 5.576384 TGAAAGTGAATGCAACAAAGTCAAC 59.424 36.000 0.00 0.00 0.00 3.18
6798 7081 1.679153 GAGAAGGTAGAAGAGGCTCGG 59.321 57.143 9.22 0.00 0.00 4.63
6803 7086 6.353404 AGAAACAAGAGAAGGTAGAAGAGG 57.647 41.667 0.00 0.00 0.00 3.69
6812 7095 3.477530 ACCCGAAAGAAACAAGAGAAGG 58.522 45.455 0.00 0.00 0.00 3.46
6823 7106 1.314730 GCTTGGACAACCCGAAAGAA 58.685 50.000 0.00 0.00 37.93 2.52
6825 7108 1.247567 ATGCTTGGACAACCCGAAAG 58.752 50.000 0.00 0.00 37.93 2.62
6843 7126 4.856487 CGACACGGCATGATAAAAACAAAT 59.144 37.500 0.00 0.00 0.00 2.32
6848 7131 2.809119 ACACGACACGGCATGATAAAAA 59.191 40.909 0.00 0.00 0.00 1.94
6856 7139 2.110213 ACCAACACGACACGGCAT 59.890 55.556 0.00 0.00 0.00 4.40
6864 7147 2.272230 TTTCCCCAGCACCAACACGA 62.272 55.000 0.00 0.00 0.00 4.35
6865 7148 1.388065 TTTTCCCCAGCACCAACACG 61.388 55.000 0.00 0.00 0.00 4.49
6871 7154 0.112412 TTCTCCTTTTCCCCAGCACC 59.888 55.000 0.00 0.00 0.00 5.01
6872 7155 1.821136 CATTCTCCTTTTCCCCAGCAC 59.179 52.381 0.00 0.00 0.00 4.40
6873 7156 1.892329 GCATTCTCCTTTTCCCCAGCA 60.892 52.381 0.00 0.00 0.00 4.41
6876 7159 1.892329 GCTGCATTCTCCTTTTCCCCA 60.892 52.381 0.00 0.00 0.00 4.96
6877 7160 0.820226 GCTGCATTCTCCTTTTCCCC 59.180 55.000 0.00 0.00 0.00 4.81
6880 7164 0.179153 GCCGCTGCATTCTCCTTTTC 60.179 55.000 0.00 0.00 37.47 2.29
6885 7169 2.629050 TACGAGCCGCTGCATTCTCC 62.629 60.000 0.00 0.00 41.13 3.71
6897 7181 2.639065 TCCATTTTCCACATACGAGCC 58.361 47.619 0.00 0.00 0.00 4.70
6898 7182 4.695217 TTTCCATTTTCCACATACGAGC 57.305 40.909 0.00 0.00 0.00 5.03
6916 7200 1.646189 TTTTTGGGCGCACTGTTTTC 58.354 45.000 12.74 0.00 0.00 2.29
7000 7289 1.109323 AACAAGCAGAACACCAGGCC 61.109 55.000 0.00 0.00 0.00 5.19
7044 7333 1.669779 CTGGACAAGAATAGCTGCTGC 59.330 52.381 13.43 7.62 40.05 5.25
7064 7356 3.944015 AGATAAAGATGTTCACTGCAGGC 59.056 43.478 19.93 5.81 0.00 4.85
7065 7357 5.181009 TGAGATAAAGATGTTCACTGCAGG 58.819 41.667 19.93 7.28 0.00 4.85
7066 7358 6.732531 TTGAGATAAAGATGTTCACTGCAG 57.267 37.500 13.48 13.48 0.00 4.41
7067 7359 7.692460 ATTTGAGATAAAGATGTTCACTGCA 57.308 32.000 0.00 0.00 0.00 4.41
7068 7360 8.976986 AAATTTGAGATAAAGATGTTCACTGC 57.023 30.769 0.00 0.00 0.00 4.40
7132 7556 5.830912 TCGATACGGAAAACATAATACGGT 58.169 37.500 0.00 0.00 0.00 4.83
7134 7558 7.749570 AGATCTCGATACGGAAAACATAATACG 59.250 37.037 0.00 0.00 0.00 3.06
7135 7559 8.967552 AGATCTCGATACGGAAAACATAATAC 57.032 34.615 0.00 0.00 0.00 1.89
7137 7561 9.790389 GATAGATCTCGATACGGAAAACATAAT 57.210 33.333 0.00 0.00 0.00 1.28
7138 7562 9.011095 AGATAGATCTCGATACGGAAAACATAA 57.989 33.333 0.00 0.00 29.30 1.90
7140 7564 7.309177 CAGATAGATCTCGATACGGAAAACAT 58.691 38.462 0.00 0.00 34.22 2.71
7145 7569 3.690139 GCCAGATAGATCTCGATACGGAA 59.310 47.826 0.00 0.00 34.22 4.30
7147 7571 3.010420 TGCCAGATAGATCTCGATACGG 58.990 50.000 0.00 0.00 34.22 4.02
7151 7580 3.495331 ACTGTGCCAGATAGATCTCGAT 58.505 45.455 0.00 0.00 34.22 3.59
7156 7585 4.399004 AGACAACTGTGCCAGATAGATC 57.601 45.455 8.91 0.00 35.18 2.75
7171 7600 4.632538 ACTTGTTGCCTTTGTAGACAAC 57.367 40.909 0.00 0.00 42.10 3.32
7174 7603 4.638304 TCCTACTTGTTGCCTTTGTAGAC 58.362 43.478 0.00 0.00 34.28 2.59
7183 7615 3.658757 TGCATTTTCCTACTTGTTGCC 57.341 42.857 0.00 0.00 0.00 4.52
7194 7626 1.135170 GCAGGAGCTCTTGCATTTTCC 60.135 52.381 37.42 12.82 46.60 3.13
7217 7650 4.744795 ATAGCTTTACCTGACAGGACAG 57.255 45.455 28.56 19.00 37.67 3.51
7218 7651 5.395324 GCTTATAGCTTTACCTGACAGGACA 60.395 44.000 28.56 12.20 36.34 4.02
7246 7679 2.246841 TGTGGCGCACATGAAAGAG 58.753 52.632 10.83 0.00 39.62 2.85
7274 7708 8.885494 TTTCAAGGTAGAATTCAAACAAATGG 57.115 30.769 8.44 0.00 0.00 3.16
7282 7716 8.730680 GCTGTAAGATTTCAAGGTAGAATTCAA 58.269 33.333 8.44 0.00 34.07 2.69
7283 7717 8.103305 AGCTGTAAGATTTCAAGGTAGAATTCA 58.897 33.333 8.44 0.00 34.07 2.57
7287 7721 5.643777 GCAGCTGTAAGATTTCAAGGTAGAA 59.356 40.000 16.64 0.00 34.07 2.10
7292 7726 3.128242 CAGGCAGCTGTAAGATTTCAAGG 59.872 47.826 16.64 0.00 34.07 3.61
7303 7737 1.554617 TCATACTTGCAGGCAGCTGTA 59.445 47.619 16.64 7.06 45.94 2.74
7305 7739 1.015109 CTCATACTTGCAGGCAGCTG 58.985 55.000 10.11 10.11 45.94 4.24
7330 7764 8.924691 TGCTGTTTGCTTGATTTGATTAATTAC 58.075 29.630 0.00 0.00 43.37 1.89
7339 7776 7.872163 TTATTAGTGCTGTTTGCTTGATTTG 57.128 32.000 0.00 0.00 43.37 2.32
7374 7811 8.265055 TCCGAAATCTATCAAGGTAGTGAAATT 58.735 33.333 0.00 0.00 0.00 1.82
7376 7813 7.177832 TCCGAAATCTATCAAGGTAGTGAAA 57.822 36.000 0.00 0.00 0.00 2.69
7377 7814 6.785337 TCCGAAATCTATCAAGGTAGTGAA 57.215 37.500 0.00 0.00 0.00 3.18
7378 7815 6.738731 GCATCCGAAATCTATCAAGGTAGTGA 60.739 42.308 0.00 0.00 0.00 3.41
7379 7816 5.406780 GCATCCGAAATCTATCAAGGTAGTG 59.593 44.000 0.00 0.00 0.00 2.74
7380 7817 5.511545 GGCATCCGAAATCTATCAAGGTAGT 60.512 44.000 0.00 0.00 0.00 2.73
7381 7818 4.932200 GGCATCCGAAATCTATCAAGGTAG 59.068 45.833 0.00 0.00 0.00 3.18
7382 7819 4.346709 TGGCATCCGAAATCTATCAAGGTA 59.653 41.667 0.00 0.00 0.00 3.08
7383 7820 3.136443 TGGCATCCGAAATCTATCAAGGT 59.864 43.478 0.00 0.00 0.00 3.50
7384 7821 3.743521 TGGCATCCGAAATCTATCAAGG 58.256 45.455 0.00 0.00 0.00 3.61
7386 7823 5.417266 TGTTTTGGCATCCGAAATCTATCAA 59.583 36.000 1.95 0.00 38.89 2.57
7388 7825 5.499139 TGTTTTGGCATCCGAAATCTATC 57.501 39.130 1.95 0.00 38.89 2.08
7390 7827 3.694072 CCTGTTTTGGCATCCGAAATCTA 59.306 43.478 1.95 0.00 38.89 1.98
7407 7844 3.923017 GCACATCTAGTTTTGCCTGTT 57.077 42.857 1.18 0.00 0.00 3.16
7424 7861 4.311816 CCAGGTAATGAATGAATGGCAC 57.688 45.455 0.00 0.00 0.00 5.01
7449 7898 1.153369 GCCGTGGAAGCAGCATAGA 60.153 57.895 0.00 0.00 0.00 1.98
7546 7995 1.065928 GCGGTACATGGACTCGGAG 59.934 63.158 17.20 2.83 0.00 4.63
7585 8034 6.601613 TGGGTATTTCTTTGCTGACGATAAAT 59.398 34.615 0.00 0.00 0.00 1.40
7591 8040 4.414852 CATTGGGTATTTCTTTGCTGACG 58.585 43.478 0.00 0.00 0.00 4.35
7611 8060 2.158559 TGACACGGCAAATACAAGCAT 58.841 42.857 0.00 0.00 0.00 3.79
7614 8063 4.418013 TGAATGACACGGCAAATACAAG 57.582 40.909 0.00 0.00 0.00 3.16
7618 8067 5.833406 ATGAATGAATGACACGGCAAATA 57.167 34.783 0.00 0.00 0.00 1.40
7622 8071 3.426025 CGAAATGAATGAATGACACGGCA 60.426 43.478 0.00 0.00 0.00 5.69
7623 8072 3.100817 CGAAATGAATGAATGACACGGC 58.899 45.455 0.00 0.00 0.00 5.68
7624 8073 4.329801 TCTCGAAATGAATGAATGACACGG 59.670 41.667 0.00 0.00 0.00 4.94
7625 8074 5.251081 GTCTCGAAATGAATGAATGACACG 58.749 41.667 0.00 0.00 0.00 4.49
7626 8075 5.251081 CGTCTCGAAATGAATGAATGACAC 58.749 41.667 0.00 0.00 0.00 3.67
7628 8077 4.566759 TCCGTCTCGAAATGAATGAATGAC 59.433 41.667 0.00 0.00 0.00 3.06
7629 8078 4.754322 TCCGTCTCGAAATGAATGAATGA 58.246 39.130 0.00 0.00 0.00 2.57
7630 8079 4.025396 CCTCCGTCTCGAAATGAATGAATG 60.025 45.833 0.00 0.00 0.00 2.67
7631 8080 4.122776 CCTCCGTCTCGAAATGAATGAAT 58.877 43.478 0.00 0.00 0.00 2.57
7632 8081 3.194755 TCCTCCGTCTCGAAATGAATGAA 59.805 43.478 0.00 0.00 0.00 2.57
7633 8082 2.758423 TCCTCCGTCTCGAAATGAATGA 59.242 45.455 0.00 0.00 0.00 2.57
7634 8083 3.119291 CTCCTCCGTCTCGAAATGAATG 58.881 50.000 0.00 0.00 0.00 2.67
7635 8084 2.101582 CCTCCTCCGTCTCGAAATGAAT 59.898 50.000 0.00 0.00 0.00 2.57
7636 8085 1.476891 CCTCCTCCGTCTCGAAATGAA 59.523 52.381 0.00 0.00 0.00 2.57
7637 8086 1.103803 CCTCCTCCGTCTCGAAATGA 58.896 55.000 0.00 0.00 0.00 2.57
7638 8087 0.818296 ACCTCCTCCGTCTCGAAATG 59.182 55.000 0.00 0.00 0.00 2.32
7657 8106 0.687354 GGACCAGAGTTCAGAGGCAA 59.313 55.000 0.00 0.00 0.00 4.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.