Multiple sequence alignment - TraesCS2A01G425500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G425500 chr2A 100.000 5353 0 0 1 5353 679280810 679275458 0.000000e+00 9886.0
1 TraesCS2A01G425500 chr2A 100.000 33 0 0 1204 1236 679279517 679279485 1.610000e-05 62.1
2 TraesCS2A01G425500 chr2D 95.627 2950 102 13 1482 4416 536535810 536532873 0.000000e+00 4708.0
3 TraesCS2A01G425500 chr2D 89.652 1063 68 16 204 1236 536537083 536536033 0.000000e+00 1315.0
4 TraesCS2A01G425500 chr2D 90.349 974 58 11 4399 5353 536532863 536531907 0.000000e+00 1245.0
5 TraesCS2A01G425500 chr2D 76.481 1688 341 44 2649 4315 536904909 536903257 0.000000e+00 867.0
6 TraesCS2A01G425500 chr2D 92.670 191 7 2 1294 1483 536536065 536535881 8.840000e-68 268.0
7 TraesCS2A01G425500 chr2B 93.328 2683 140 10 2686 5348 638774442 638771779 0.000000e+00 3927.0
8 TraesCS2A01G425500 chr2B 92.486 905 42 17 1333 2228 638776054 638775167 0.000000e+00 1271.0
9 TraesCS2A01G425500 chr2B 87.031 987 48 29 279 1228 638776994 638776051 0.000000e+00 1040.0
10 TraesCS2A01G425500 chr2B 93.426 502 19 6 2207 2703 638774999 638774507 0.000000e+00 732.0
11 TraesCS2A01G425500 chr2B 92.308 130 9 1 1 129 785543000 785543129 3.290000e-42 183.0
12 TraesCS2A01G425500 chr2B 85.890 163 23 0 130 292 638821984 638821822 1.980000e-39 174.0
13 TraesCS2A01G425500 chr2B 100.000 36 0 0 1258 1293 490871080 490871115 3.460000e-07 67.6
14 TraesCS2A01G425500 chr1A 93.846 130 7 1 1 129 426727782 426727653 1.520000e-45 195.0
15 TraesCS2A01G425500 chr1A 91.045 134 11 1 1 133 448917068 448916935 4.260000e-41 180.0
16 TraesCS2A01G425500 chr1A 95.122 41 2 0 319 359 253314090 253314050 1.240000e-06 65.8
17 TraesCS2A01G425500 chr1A 81.928 83 9 4 280 359 277626307 277626386 1.240000e-06 65.8
18 TraesCS2A01G425500 chr6B 90.345 145 12 2 1 144 694664040 694664183 7.080000e-44 189.0
19 TraesCS2A01G425500 chr5D 93.077 130 7 2 1 129 449905260 449905132 7.080000e-44 189.0
20 TraesCS2A01G425500 chr5D 91.538 130 10 1 1 129 128586554 128586683 1.530000e-40 178.0
21 TraesCS2A01G425500 chr7A 91.912 136 8 2 1 133 85953626 85953761 2.550000e-43 187.0
22 TraesCS2A01G425500 chr4A 90.714 140 11 2 1 139 664482318 664482180 9.160000e-43 185.0
23 TraesCS2A01G425500 chr3D 92.188 128 9 1 3 129 578148977 578149104 4.260000e-41 180.0
24 TraesCS2A01G425500 chr3B 83.333 84 6 6 280 359 24510961 24511040 2.670000e-08 71.3
25 TraesCS2A01G425500 chr3B 95.122 41 2 0 319 359 698298408 698298368 1.240000e-06 65.8
26 TraesCS2A01G425500 chr3B 80.723 83 10 4 280 359 541062328 541062407 5.790000e-05 60.2
27 TraesCS2A01G425500 chr7B 81.928 83 9 4 280 359 534056231 534056310 1.240000e-06 65.8
28 TraesCS2A01G425500 chr5A 81.928 83 9 4 280 359 343043375 343043454 1.240000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G425500 chr2A 679275458 679280810 5352 True 4974.05 9886 100.00000 1 5353 2 chr2A.!!$R1 5352
1 TraesCS2A01G425500 chr2D 536531907 536537083 5176 True 1884.00 4708 92.07450 204 5353 4 chr2D.!!$R2 5149
2 TraesCS2A01G425500 chr2D 536903257 536904909 1652 True 867.00 867 76.48100 2649 4315 1 chr2D.!!$R1 1666
3 TraesCS2A01G425500 chr2B 638771779 638776994 5215 True 1742.50 3927 91.56775 279 5348 4 chr2B.!!$R2 5069

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
782 807 0.179032 TGAACCTTTTGAGCCAGCGA 60.179 50.0 0.0 0.0 0.00 4.93 F
783 808 0.238553 GAACCTTTTGAGCCAGCGAC 59.761 55.0 0.0 0.0 0.00 5.19 F
1578 1705 0.447406 GCATCATACGCTGCACACAA 59.553 50.0 0.0 0.0 38.28 3.33 F
2751 3162 0.523072 TCTACACTACGTTGGACCGC 59.477 55.0 0.0 0.0 0.00 5.68 F
3651 4069 3.096092 GGAATGGAGAGAGAGCGGATAT 58.904 50.0 0.0 0.0 0.00 1.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2589 2912 0.038526 AGCTACAAGGTGACGGTTCG 60.039 55.000 0.00 0.0 0.00 3.95 R
2751 3162 6.018589 TCGATGTTCATCTTATGCTCTAGG 57.981 41.667 10.44 0.0 0.00 3.02 R
3356 3770 1.561643 TCCCACCTGCACAACAAAAA 58.438 45.000 0.00 0.0 0.00 1.94 R
3681 4099 0.384974 ATGCAAACGTAACAACCGCG 60.385 50.000 0.00 0.0 0.00 6.46 R
5249 5720 0.748450 AGTTCCACAACTTCGACGGA 59.252 50.000 0.00 0.0 40.16 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.724074 CACACATGTGGGCAATTCTAAT 57.276 40.909 28.64 0.98 42.10 1.73
28 29 4.426416 CACACATGTGGGCAATTCTAATG 58.574 43.478 28.64 10.14 42.10 1.90
29 30 4.082081 CACACATGTGGGCAATTCTAATGT 60.082 41.667 28.64 0.31 42.10 2.71
30 31 4.158394 ACACATGTGGGCAATTCTAATGTC 59.842 41.667 28.64 0.00 34.19 3.06
31 32 4.400251 CACATGTGGGCAATTCTAATGTCT 59.600 41.667 18.51 0.00 0.00 3.41
32 33 4.400251 ACATGTGGGCAATTCTAATGTCTG 59.600 41.667 0.00 0.00 0.00 3.51
33 34 2.754552 TGTGGGCAATTCTAATGTCTGC 59.245 45.455 0.00 0.00 0.00 4.26
38 39 3.762779 GCAATTCTAATGTCTGCCACAC 58.237 45.455 0.00 0.00 38.04 3.82
39 40 3.191162 GCAATTCTAATGTCTGCCACACA 59.809 43.478 0.00 0.00 38.04 3.72
40 41 4.726416 CAATTCTAATGTCTGCCACACAC 58.274 43.478 0.00 0.00 38.04 3.82
41 42 3.483808 TTCTAATGTCTGCCACACACA 57.516 42.857 0.00 0.00 38.04 3.72
42 43 3.044235 TCTAATGTCTGCCACACACAG 57.956 47.619 0.00 0.00 38.04 3.66
43 44 1.466167 CTAATGTCTGCCACACACAGC 59.534 52.381 0.00 0.00 38.04 4.40
44 45 1.174712 AATGTCTGCCACACACAGCC 61.175 55.000 0.00 0.00 38.04 4.85
45 46 2.980233 GTCTGCCACACACAGCCC 60.980 66.667 0.00 0.00 35.04 5.19
46 47 4.624364 TCTGCCACACACAGCCCG 62.624 66.667 0.00 0.00 35.04 6.13
47 48 4.935495 CTGCCACACACAGCCCGT 62.935 66.667 0.00 0.00 0.00 5.28
61 62 2.683933 CCGTGTGGGCTACCTCCT 60.684 66.667 0.00 0.00 37.76 3.69
62 63 1.380785 CCGTGTGGGCTACCTCCTA 60.381 63.158 0.00 0.00 37.76 2.94
63 64 1.673808 CCGTGTGGGCTACCTCCTAC 61.674 65.000 0.00 0.00 38.01 3.18
64 65 0.683504 CGTGTGGGCTACCTCCTACT 60.684 60.000 0.00 0.00 38.30 2.57
65 66 1.112950 GTGTGGGCTACCTCCTACTC 58.887 60.000 0.00 0.00 38.30 2.59
66 67 0.708209 TGTGGGCTACCTCCTACTCA 59.292 55.000 0.00 0.00 38.30 3.41
67 68 1.112950 GTGGGCTACCTCCTACTCAC 58.887 60.000 0.00 0.00 35.07 3.51
68 69 0.708209 TGGGCTACCTCCTACTCACA 59.292 55.000 0.00 0.00 37.76 3.58
69 70 1.112950 GGGCTACCTCCTACTCACAC 58.887 60.000 0.00 0.00 0.00 3.82
70 71 1.112950 GGCTACCTCCTACTCACACC 58.887 60.000 0.00 0.00 0.00 4.16
71 72 1.618888 GGCTACCTCCTACTCACACCA 60.619 57.143 0.00 0.00 0.00 4.17
72 73 1.477295 GCTACCTCCTACTCACACCAC 59.523 57.143 0.00 0.00 0.00 4.16
73 74 2.803956 CTACCTCCTACTCACACCACA 58.196 52.381 0.00 0.00 0.00 4.17
74 75 1.339097 ACCTCCTACTCACACCACAC 58.661 55.000 0.00 0.00 0.00 3.82
75 76 1.338107 CCTCCTACTCACACCACACA 58.662 55.000 0.00 0.00 0.00 3.72
76 77 1.000955 CCTCCTACTCACACCACACAC 59.999 57.143 0.00 0.00 0.00 3.82
77 78 0.671796 TCCTACTCACACCACACACG 59.328 55.000 0.00 0.00 0.00 4.49
78 79 0.319555 CCTACTCACACCACACACGG 60.320 60.000 0.00 0.00 0.00 4.94
79 80 0.387929 CTACTCACACCACACACGGT 59.612 55.000 0.00 0.00 41.07 4.83
91 92 2.664851 CACGGTGTGTGGACGCAT 60.665 61.111 0.00 0.00 45.21 4.73
92 93 2.664851 ACGGTGTGTGGACGCATG 60.665 61.111 0.00 0.00 38.74 4.06
93 94 2.664851 CGGTGTGTGGACGCATGT 60.665 61.111 0.00 0.00 38.74 3.21
94 95 2.667318 CGGTGTGTGGACGCATGTC 61.667 63.158 0.00 0.00 44.72 3.06
95 96 2.667318 GGTGTGTGGACGCATGTCG 61.667 63.158 7.79 7.79 46.49 4.35
96 97 1.663388 GTGTGTGGACGCATGTCGA 60.663 57.895 14.88 0.00 46.49 4.20
97 98 1.068250 TGTGTGGACGCATGTCGAA 59.932 52.632 14.88 0.09 46.49 3.71
98 99 0.320334 TGTGTGGACGCATGTCGAAT 60.320 50.000 14.88 0.00 46.49 3.34
99 100 1.067495 TGTGTGGACGCATGTCGAATA 60.067 47.619 14.88 0.22 46.49 1.75
100 101 2.201732 GTGTGGACGCATGTCGAATAT 58.798 47.619 14.88 0.00 46.49 1.28
101 102 3.181485 TGTGTGGACGCATGTCGAATATA 60.181 43.478 14.88 0.00 46.49 0.86
102 103 3.987868 GTGTGGACGCATGTCGAATATAT 59.012 43.478 14.88 0.00 46.49 0.86
103 104 4.090066 GTGTGGACGCATGTCGAATATATC 59.910 45.833 14.88 2.83 46.49 1.63
104 105 4.234574 GTGGACGCATGTCGAATATATCA 58.765 43.478 14.88 0.00 46.49 2.15
105 106 4.090066 GTGGACGCATGTCGAATATATCAC 59.910 45.833 14.88 8.59 46.49 3.06
106 107 4.234574 GGACGCATGTCGAATATATCACA 58.765 43.478 14.88 0.00 46.49 3.58
107 108 4.090066 GGACGCATGTCGAATATATCACAC 59.910 45.833 14.88 0.00 46.49 3.82
108 109 3.668656 ACGCATGTCGAATATATCACACG 59.331 43.478 14.88 0.00 41.67 4.49
109 110 3.668656 CGCATGTCGAATATATCACACGT 59.331 43.478 3.85 0.00 41.67 4.49
110 111 4.431599 CGCATGTCGAATATATCACACGTG 60.432 45.833 15.48 15.48 41.67 4.49
111 112 4.444388 GCATGTCGAATATATCACACGTGT 59.556 41.667 17.22 17.22 33.16 4.49
112 113 5.610338 GCATGTCGAATATATCACACGTGTG 60.610 44.000 37.04 37.04 46.91 3.82
113 114 4.356289 TGTCGAATATATCACACGTGTGG 58.644 43.478 39.88 24.84 45.65 4.17
114 115 3.181774 GTCGAATATATCACACGTGTGGC 59.818 47.826 39.88 22.07 45.65 5.01
115 116 3.120041 CGAATATATCACACGTGTGGCA 58.880 45.455 39.88 29.75 45.65 4.92
116 117 3.182372 CGAATATATCACACGTGTGGCAG 59.818 47.826 39.88 21.10 45.65 4.85
117 118 3.819564 ATATATCACACGTGTGGCAGT 57.180 42.857 39.88 27.08 45.65 4.40
118 119 2.472695 ATATCACACGTGTGGCAGTT 57.527 45.000 39.88 24.35 45.65 3.16
119 120 3.603158 ATATCACACGTGTGGCAGTTA 57.397 42.857 39.88 24.77 45.65 2.24
120 121 2.472695 ATCACACGTGTGGCAGTTAT 57.527 45.000 39.88 25.74 45.65 1.89
121 122 1.790755 TCACACGTGTGGCAGTTATC 58.209 50.000 39.88 0.00 45.65 1.75
122 123 1.069358 TCACACGTGTGGCAGTTATCA 59.931 47.619 39.88 20.41 45.65 2.15
123 124 1.460743 CACACGTGTGGCAGTTATCAG 59.539 52.381 35.65 10.09 42.10 2.90
124 125 0.443869 CACGTGTGGCAGTTATCAGC 59.556 55.000 7.58 0.00 0.00 4.26
125 126 1.014044 ACGTGTGGCAGTTATCAGCG 61.014 55.000 0.00 0.00 0.00 5.18
126 127 1.014044 CGTGTGGCAGTTATCAGCGT 61.014 55.000 0.00 0.00 0.00 5.07
127 128 0.721718 GTGTGGCAGTTATCAGCGTC 59.278 55.000 0.00 0.00 0.00 5.19
128 129 0.391130 TGTGGCAGTTATCAGCGTCC 60.391 55.000 0.00 0.00 0.00 4.79
129 130 0.391130 GTGGCAGTTATCAGCGTCCA 60.391 55.000 0.00 0.00 0.00 4.02
130 131 0.323302 TGGCAGTTATCAGCGTCCAA 59.677 50.000 0.00 0.00 0.00 3.53
131 132 1.271108 TGGCAGTTATCAGCGTCCAAA 60.271 47.619 0.00 0.00 0.00 3.28
132 133 1.810151 GGCAGTTATCAGCGTCCAAAA 59.190 47.619 0.00 0.00 0.00 2.44
133 134 2.414161 GGCAGTTATCAGCGTCCAAAAC 60.414 50.000 0.00 0.00 0.00 2.43
134 135 2.225491 GCAGTTATCAGCGTCCAAAACA 59.775 45.455 0.00 0.00 0.00 2.83
135 136 3.304391 GCAGTTATCAGCGTCCAAAACAA 60.304 43.478 0.00 0.00 0.00 2.83
136 137 4.791411 GCAGTTATCAGCGTCCAAAACAAA 60.791 41.667 0.00 0.00 0.00 2.83
137 138 5.277825 CAGTTATCAGCGTCCAAAACAAAA 58.722 37.500 0.00 0.00 0.00 2.44
138 139 5.399301 CAGTTATCAGCGTCCAAAACAAAAG 59.601 40.000 0.00 0.00 0.00 2.27
139 140 2.202295 TCAGCGTCCAAAACAAAAGC 57.798 45.000 0.00 0.00 0.00 3.51
140 141 1.474478 TCAGCGTCCAAAACAAAAGCA 59.526 42.857 0.00 0.00 0.00 3.91
141 142 2.100584 TCAGCGTCCAAAACAAAAGCAT 59.899 40.909 0.00 0.00 0.00 3.79
142 143 2.865551 CAGCGTCCAAAACAAAAGCATT 59.134 40.909 0.00 0.00 0.00 3.56
143 144 3.309410 CAGCGTCCAAAACAAAAGCATTT 59.691 39.130 0.00 0.00 42.41 2.32
155 156 4.942761 AAAAGCATTTGAAGAGGAAGCA 57.057 36.364 0.00 0.00 39.02 3.91
156 157 4.942761 AAAGCATTTGAAGAGGAAGCAA 57.057 36.364 0.00 0.00 36.60 3.91
157 158 4.942761 AAGCATTTGAAGAGGAAGCAAA 57.057 36.364 0.00 0.00 36.15 3.68
158 159 4.942761 AGCATTTGAAGAGGAAGCAAAA 57.057 36.364 0.00 0.00 35.44 2.44
159 160 5.280654 AGCATTTGAAGAGGAAGCAAAAA 57.719 34.783 0.00 0.00 35.44 1.94
160 161 5.052481 AGCATTTGAAGAGGAAGCAAAAAC 58.948 37.500 0.00 0.00 35.44 2.43
161 162 4.810491 GCATTTGAAGAGGAAGCAAAAACA 59.190 37.500 0.00 0.00 35.44 2.83
162 163 5.467735 GCATTTGAAGAGGAAGCAAAAACAT 59.532 36.000 0.00 0.00 35.44 2.71
163 164 6.646240 GCATTTGAAGAGGAAGCAAAAACATA 59.354 34.615 0.00 0.00 35.44 2.29
164 165 7.171337 GCATTTGAAGAGGAAGCAAAAACATAA 59.829 33.333 0.00 0.00 35.44 1.90
165 166 9.211485 CATTTGAAGAGGAAGCAAAAACATAAT 57.789 29.630 0.00 0.00 35.44 1.28
166 167 9.783081 ATTTGAAGAGGAAGCAAAAACATAATT 57.217 25.926 0.00 0.00 35.44 1.40
168 169 9.912634 TTGAAGAGGAAGCAAAAACATAATTAG 57.087 29.630 0.00 0.00 0.00 1.73
169 170 8.028938 TGAAGAGGAAGCAAAAACATAATTAGC 58.971 33.333 0.00 0.00 0.00 3.09
170 171 7.466746 AGAGGAAGCAAAAACATAATTAGCA 57.533 32.000 0.00 0.00 0.00 3.49
171 172 7.542025 AGAGGAAGCAAAAACATAATTAGCAG 58.458 34.615 0.00 0.00 0.00 4.24
172 173 7.177392 AGAGGAAGCAAAAACATAATTAGCAGT 59.823 33.333 0.00 0.00 0.00 4.40
173 174 7.092716 AGGAAGCAAAAACATAATTAGCAGTG 58.907 34.615 0.00 0.00 0.00 3.66
174 175 7.039784 AGGAAGCAAAAACATAATTAGCAGTGA 60.040 33.333 0.00 0.00 0.00 3.41
175 176 7.274250 GGAAGCAAAAACATAATTAGCAGTGAG 59.726 37.037 0.00 0.00 0.00 3.51
176 177 7.452880 AGCAAAAACATAATTAGCAGTGAGA 57.547 32.000 0.00 0.00 0.00 3.27
177 178 7.533426 AGCAAAAACATAATTAGCAGTGAGAG 58.467 34.615 0.00 0.00 0.00 3.20
178 179 6.252228 GCAAAAACATAATTAGCAGTGAGAGC 59.748 38.462 0.00 0.00 0.00 4.09
179 180 7.307694 CAAAAACATAATTAGCAGTGAGAGCA 58.692 34.615 0.00 0.00 0.00 4.26
180 181 6.674694 AAACATAATTAGCAGTGAGAGCAG 57.325 37.500 0.00 0.00 0.00 4.24
181 182 5.604758 ACATAATTAGCAGTGAGAGCAGA 57.395 39.130 0.00 0.00 0.00 4.26
182 183 5.982356 ACATAATTAGCAGTGAGAGCAGAA 58.018 37.500 0.00 0.00 0.00 3.02
183 184 6.409704 ACATAATTAGCAGTGAGAGCAGAAA 58.590 36.000 0.00 0.00 0.00 2.52
184 185 7.052873 ACATAATTAGCAGTGAGAGCAGAAAT 58.947 34.615 0.00 0.00 0.00 2.17
185 186 7.226325 ACATAATTAGCAGTGAGAGCAGAAATC 59.774 37.037 0.00 0.00 0.00 2.17
186 187 2.399916 AGCAGTGAGAGCAGAAATCC 57.600 50.000 0.00 0.00 0.00 3.01
187 188 1.065564 AGCAGTGAGAGCAGAAATCCC 60.066 52.381 0.00 0.00 0.00 3.85
188 189 2.016096 GCAGTGAGAGCAGAAATCCCC 61.016 57.143 0.00 0.00 0.00 4.81
189 190 1.280133 CAGTGAGAGCAGAAATCCCCA 59.720 52.381 0.00 0.00 0.00 4.96
190 191 2.092538 CAGTGAGAGCAGAAATCCCCAT 60.093 50.000 0.00 0.00 0.00 4.00
191 192 3.135348 CAGTGAGAGCAGAAATCCCCATA 59.865 47.826 0.00 0.00 0.00 2.74
192 193 3.390639 AGTGAGAGCAGAAATCCCCATAG 59.609 47.826 0.00 0.00 0.00 2.23
193 194 2.105477 TGAGAGCAGAAATCCCCATAGC 59.895 50.000 0.00 0.00 0.00 2.97
194 195 2.105477 GAGAGCAGAAATCCCCATAGCA 59.895 50.000 0.00 0.00 0.00 3.49
195 196 2.511218 AGAGCAGAAATCCCCATAGCAA 59.489 45.455 0.00 0.00 0.00 3.91
196 197 3.139770 AGAGCAGAAATCCCCATAGCAAT 59.860 43.478 0.00 0.00 0.00 3.56
197 198 3.494332 AGCAGAAATCCCCATAGCAATC 58.506 45.455 0.00 0.00 0.00 2.67
198 199 3.139770 AGCAGAAATCCCCATAGCAATCT 59.860 43.478 0.00 0.00 0.00 2.40
199 200 3.893813 GCAGAAATCCCCATAGCAATCTT 59.106 43.478 0.00 0.00 0.00 2.40
200 201 4.022503 GCAGAAATCCCCATAGCAATCTTC 60.023 45.833 0.00 0.00 0.00 2.87
201 202 5.383476 CAGAAATCCCCATAGCAATCTTCT 58.617 41.667 0.00 0.00 0.00 2.85
202 203 5.472820 CAGAAATCCCCATAGCAATCTTCTC 59.527 44.000 0.00 0.00 0.00 2.87
223 224 8.668510 TTCTCCTTAAGCATCAGATGTATTTC 57.331 34.615 12.18 0.00 0.00 2.17
226 227 5.180117 CCTTAAGCATCAGATGTATTTCCCG 59.820 44.000 12.18 0.00 0.00 5.14
227 228 3.845781 AGCATCAGATGTATTTCCCGT 57.154 42.857 12.18 0.00 0.00 5.28
240 241 7.795482 TGTATTTCCCGTCATAAATACCAAG 57.205 36.000 12.79 0.00 43.31 3.61
241 242 7.566569 TGTATTTCCCGTCATAAATACCAAGA 58.433 34.615 12.79 0.00 43.31 3.02
257 258 2.097466 CCAAGAAATAATTGGCTCGCGT 59.903 45.455 5.77 0.00 40.74 6.01
261 262 6.293190 CCAAGAAATAATTGGCTCGCGTATTA 60.293 38.462 5.77 4.64 40.74 0.98
269 270 0.435008 GCTCGCGTATTATGAAGCCG 59.565 55.000 5.77 0.00 0.00 5.52
276 277 4.798907 CGCGTATTATGAAGCCGATCTTAT 59.201 41.667 0.00 0.00 34.56 1.73
330 331 0.535780 CAGAACAGCCTCACCAGCAA 60.536 55.000 0.00 0.00 0.00 3.91
345 346 2.486982 CCAGCAAGATCAACCTCACAAG 59.513 50.000 0.00 0.00 0.00 3.16
373 376 9.013229 TCTATCAATAATTTTCCAATCCCATCG 57.987 33.333 0.00 0.00 0.00 3.84
374 377 7.601705 ATCAATAATTTTCCAATCCCATCGT 57.398 32.000 0.00 0.00 0.00 3.73
375 378 7.416964 TCAATAATTTTCCAATCCCATCGTT 57.583 32.000 0.00 0.00 0.00 3.85
376 379 8.526667 TCAATAATTTTCCAATCCCATCGTTA 57.473 30.769 0.00 0.00 0.00 3.18
377 380 8.629158 TCAATAATTTTCCAATCCCATCGTTAG 58.371 33.333 0.00 0.00 0.00 2.34
488 499 1.222300 CGATCGACATCTCCTCTCGT 58.778 55.000 10.26 0.00 0.00 4.18
731 756 2.095843 GCACGCGTGAATTCCGTC 59.904 61.111 41.19 17.94 32.18 4.79
734 759 1.800315 ACGCGTGAATTCCGTCTCG 60.800 57.895 12.93 12.60 37.52 4.04
756 781 1.134965 ACGAGGCATGTCTACTTGCTC 60.135 52.381 17.31 12.54 43.82 4.26
757 782 1.135915 CGAGGCATGTCTACTTGCTCT 59.864 52.381 17.31 13.34 43.82 4.09
758 783 2.417924 CGAGGCATGTCTACTTGCTCTT 60.418 50.000 17.31 6.83 43.82 2.85
759 784 2.935201 GAGGCATGTCTACTTGCTCTTG 59.065 50.000 17.31 0.00 43.82 3.02
760 785 1.399791 GGCATGTCTACTTGCTCTTGC 59.600 52.381 17.31 0.00 43.82 4.01
761 786 2.354259 GCATGTCTACTTGCTCTTGCT 58.646 47.619 12.32 0.00 41.90 3.91
782 807 0.179032 TGAACCTTTTGAGCCAGCGA 60.179 50.000 0.00 0.00 0.00 4.93
783 808 0.238553 GAACCTTTTGAGCCAGCGAC 59.761 55.000 0.00 0.00 0.00 5.19
784 809 0.465460 AACCTTTTGAGCCAGCGACA 60.465 50.000 0.00 0.00 0.00 4.35
785 810 0.886490 ACCTTTTGAGCCAGCGACAG 60.886 55.000 0.00 0.00 0.00 3.51
786 811 1.580845 CCTTTTGAGCCAGCGACAGG 61.581 60.000 0.00 0.00 0.00 4.00
787 812 0.603707 CTTTTGAGCCAGCGACAGGA 60.604 55.000 0.00 0.00 0.00 3.86
829 854 7.599171 TCGTGAAACAGAAGTGATAACAGATA 58.401 34.615 0.00 0.00 35.74 1.98
839 864 8.346300 AGAAGTGATAACAGATACATACTCGTG 58.654 37.037 0.00 0.00 0.00 4.35
885 916 5.863935 TGGATTTTCGATACGATATCTGCAG 59.136 40.000 7.63 7.63 35.23 4.41
903 934 1.770658 CAGCCCAGATAGGAATGTCCA 59.229 52.381 0.00 0.00 39.61 4.02
911 942 2.447408 TAGGAATGTCCAGCGACCTA 57.553 50.000 0.00 0.00 39.61 3.08
1005 1051 1.676529 ACATCGGTCGATCGAATGACT 59.323 47.619 26.41 4.87 42.69 3.41
1032 1078 0.872388 GGGGCGTAATTAATCTGCCG 59.128 55.000 15.37 5.84 46.66 5.69
1070 1116 4.335647 AAGTGGTCGCTGCCCCTG 62.336 66.667 0.00 0.00 0.00 4.45
1121 1167 3.910490 GCGGCCGAGCAGATCTCT 61.910 66.667 33.48 0.00 39.70 3.10
1178 1227 1.174783 GCCCATGCATGATCCATCTC 58.825 55.000 28.31 3.86 37.47 2.75
1199 1248 3.189080 TCGGTCGTCTCGTTTCTTTGATA 59.811 43.478 0.00 0.00 0.00 2.15
1228 1277 6.980593 TGTTTTATACATGCAAACAGCTTCT 58.019 32.000 0.00 0.00 45.94 2.85
1229 1278 7.432869 TGTTTTATACATGCAAACAGCTTCTT 58.567 30.769 0.00 0.00 45.94 2.52
1230 1279 7.594758 TGTTTTATACATGCAAACAGCTTCTTC 59.405 33.333 0.00 0.00 45.94 2.87
1231 1280 7.452880 TTTATACATGCAAACAGCTTCTTCT 57.547 32.000 0.00 0.00 45.94 2.85
1232 1281 5.972107 ATACATGCAAACAGCTTCTTCTT 57.028 34.783 0.00 0.00 45.94 2.52
1233 1282 4.234530 ACATGCAAACAGCTTCTTCTTC 57.765 40.909 0.00 0.00 45.94 2.87
1234 1283 3.887716 ACATGCAAACAGCTTCTTCTTCT 59.112 39.130 0.00 0.00 45.94 2.85
1235 1284 4.340381 ACATGCAAACAGCTTCTTCTTCTT 59.660 37.500 0.00 0.00 45.94 2.52
1236 1285 4.989279 TGCAAACAGCTTCTTCTTCTTT 57.011 36.364 0.00 0.00 45.94 2.52
1237 1286 4.675510 TGCAAACAGCTTCTTCTTCTTTG 58.324 39.130 0.00 0.00 45.94 2.77
1238 1287 4.398988 TGCAAACAGCTTCTTCTTCTTTGA 59.601 37.500 0.00 0.00 45.94 2.69
1239 1288 5.068198 TGCAAACAGCTTCTTCTTCTTTGAT 59.932 36.000 0.00 0.00 45.94 2.57
1240 1289 6.262944 TGCAAACAGCTTCTTCTTCTTTGATA 59.737 34.615 0.00 0.00 45.94 2.15
1241 1290 7.040201 TGCAAACAGCTTCTTCTTCTTTGATAT 60.040 33.333 0.00 0.00 45.94 1.63
1242 1291 7.272948 GCAAACAGCTTCTTCTTCTTTGATATG 59.727 37.037 0.00 0.00 41.15 1.78
1243 1292 7.992754 AACAGCTTCTTCTTCTTTGATATGT 57.007 32.000 0.00 0.00 0.00 2.29
1244 1293 7.992754 ACAGCTTCTTCTTCTTTGATATGTT 57.007 32.000 0.00 0.00 0.00 2.71
1245 1294 8.401490 ACAGCTTCTTCTTCTTTGATATGTTT 57.599 30.769 0.00 0.00 0.00 2.83
1246 1295 8.295288 ACAGCTTCTTCTTCTTTGATATGTTTG 58.705 33.333 0.00 0.00 0.00 2.93
1247 1296 8.295288 CAGCTTCTTCTTCTTTGATATGTTTGT 58.705 33.333 0.00 0.00 0.00 2.83
1248 1297 8.854117 AGCTTCTTCTTCTTTGATATGTTTGTT 58.146 29.630 0.00 0.00 0.00 2.83
1249 1298 9.468532 GCTTCTTCTTCTTTGATATGTTTGTTT 57.531 29.630 0.00 0.00 0.00 2.83
1269 1318 8.973835 TTGTTTTATACCAAAATAGGCTTTCG 57.026 30.769 0.00 0.00 0.00 3.46
1270 1319 7.030768 TGTTTTATACCAAAATAGGCTTTCGC 58.969 34.615 0.00 0.00 0.00 4.70
1314 1363 7.268872 GCAAATTGTTTTATACATGCAAACAGC 59.731 33.333 10.96 8.65 40.54 4.40
1315 1364 8.497554 CAAATTGTTTTATACATGCAAACAGCT 58.502 29.630 10.96 0.00 40.54 4.24
1316 1365 8.606040 AATTGTTTTATACATGCAAACAGCTT 57.394 26.923 10.96 7.94 40.54 3.74
1317 1366 7.636259 TTGTTTTATACATGCAAACAGCTTC 57.364 32.000 10.96 0.00 40.54 3.86
1318 1367 6.980593 TGTTTTATACATGCAAACAGCTTCT 58.019 32.000 0.00 0.00 45.94 2.85
1319 1368 7.432869 TGTTTTATACATGCAAACAGCTTCTT 58.567 30.769 0.00 0.00 45.94 2.52
1320 1369 7.594758 TGTTTTATACATGCAAACAGCTTCTTC 59.405 33.333 0.00 0.00 45.94 2.87
1321 1370 7.452880 TTTATACATGCAAACAGCTTCTTCT 57.547 32.000 0.00 0.00 45.94 2.85
1322 1371 5.972107 ATACATGCAAACAGCTTCTTCTT 57.028 34.783 0.00 0.00 45.94 2.52
1323 1372 4.234530 ACATGCAAACAGCTTCTTCTTC 57.765 40.909 0.00 0.00 45.94 2.87
1324 1373 3.887716 ACATGCAAACAGCTTCTTCTTCT 59.112 39.130 0.00 0.00 45.94 2.85
1420 1471 4.274147 TCTTTACAACAGTGGCCAAGAAA 58.726 39.130 7.24 0.00 0.00 2.52
1578 1705 0.447406 GCATCATACGCTGCACACAA 59.553 50.000 0.00 0.00 38.28 3.33
1641 1768 8.827177 TTGTATGTGTACTTTTCAGTTAGGAG 57.173 34.615 0.00 0.00 34.06 3.69
1656 1783 7.573710 TCAGTTAGGAGTAATAAATGGCATGT 58.426 34.615 0.00 0.00 31.07 3.21
1673 1800 4.513318 GGCATGTATCAGAAGAAGGTTAGC 59.487 45.833 0.00 0.00 0.00 3.09
1684 1811 4.968812 AGAAGGTTAGCGAGACTAGAAC 57.031 45.455 0.00 0.00 30.79 3.01
1685 1812 3.374678 AGAAGGTTAGCGAGACTAGAACG 59.625 47.826 0.00 0.00 30.79 3.95
1742 1869 2.665089 CCATGACACGGCAGGGGTA 61.665 63.158 0.00 0.00 36.14 3.69
1790 1917 1.516110 CCTCCCCTCAGATCCAATGT 58.484 55.000 0.00 0.00 0.00 2.71
1993 2120 4.688511 ACTGATTGTAGAGTCTCGTGTC 57.311 45.455 0.00 0.00 0.00 3.67
2286 2607 5.701290 ACTAACTACTCACCTGAAAACATGC 59.299 40.000 0.00 0.00 0.00 4.06
2508 2829 8.117312 ACTCCTAAGAGAGGTAAATACTCAACT 58.883 37.037 0.00 0.00 46.76 3.16
2511 2832 5.941555 AGAGAGGTAAATACTCAACTGGG 57.058 43.478 0.00 0.00 37.43 4.45
2537 2860 1.935199 ACTTGTACCCACAACGTTTCG 59.065 47.619 0.00 0.00 39.75 3.46
2589 2912 6.798959 GTGAACTTGTGATAAATCTTCAGTGC 59.201 38.462 0.00 0.00 0.00 4.40
2684 3013 7.094720 ACTCTACTTGTATGCTCGGTGATATAC 60.095 40.741 0.00 0.00 0.00 1.47
2751 3162 0.523072 TCTACACTACGTTGGACCGC 59.477 55.000 0.00 0.00 0.00 5.68
2775 3186 6.092092 CCTAGAGCATAAGATGAACATCGAG 58.908 44.000 8.79 2.97 42.48 4.04
2776 3187 5.781210 AGAGCATAAGATGAACATCGAGA 57.219 39.130 8.79 0.38 42.48 4.04
2886 3299 8.458573 ACTTCACAAGACACCAATGTTATTAA 57.541 30.769 0.00 0.00 39.95 1.40
2904 3317 9.284968 TGTTATTAAATATCTTAAGCAGGCCTC 57.715 33.333 0.00 0.00 0.00 4.70
3519 3933 8.709646 CAAACACTTTGTAGACATAGTTAGTCC 58.290 37.037 3.36 0.00 36.29 3.85
3592 4010 9.669353 CAAATACTAATGTGATTACTGGATTGC 57.331 33.333 0.00 0.00 0.00 3.56
3651 4069 3.096092 GGAATGGAGAGAGAGCGGATAT 58.904 50.000 0.00 0.00 0.00 1.63
3681 4099 3.100671 ACCAGAGGAGTACATGGAGAAC 58.899 50.000 3.70 0.00 36.62 3.01
3909 4333 4.079665 TGTCGAGAGATAAACACGTCTG 57.920 45.455 0.00 0.00 45.19 3.51
3968 4392 7.310983 GGAAAATAGCAGGAGGAGATAGCTAAT 60.311 40.741 0.00 0.00 40.70 1.73
3996 4420 6.639671 TTTTGTTGTTGTTGACTATGTTGC 57.360 33.333 0.00 0.00 0.00 4.17
4052 4476 3.295785 CGTATCTCTGCTCGTTCATCAG 58.704 50.000 0.00 0.00 0.00 2.90
4065 4489 1.812922 CATCAGAGTGGTGGCTCGC 60.813 63.158 0.00 0.00 40.26 5.03
4115 4539 1.487976 CAGGAGCCCATAGACACATGT 59.512 52.381 0.00 0.00 0.00 3.21
4130 4554 6.219473 AGACACATGTAGAAGAGACTTGTTG 58.781 40.000 0.00 0.00 34.09 3.33
4184 4608 5.491982 CCTAGACTATGCAAGGAGTTGTTT 58.508 41.667 0.00 0.00 35.92 2.83
4247 4671 2.510238 GCGTTCAGCTCGCCAGAT 60.510 61.111 7.01 0.00 46.61 2.90
4309 4733 1.500474 CAGCTCCCCCTGAATCTACA 58.500 55.000 0.00 0.00 34.77 2.74
4330 4754 0.244994 CCTGGTCTCGACTTGTCCTG 59.755 60.000 0.00 0.00 0.00 3.86
4338 4762 1.067565 TCGACTTGTCCTGTCTGCATC 60.068 52.381 0.00 0.00 32.70 3.91
4474 4925 6.062095 GGGCATCATACCTAATAAGTGTGTT 58.938 40.000 0.00 0.00 0.00 3.32
4738 5196 7.663081 TCTGCATTCTTTCTTTTCACTCTATGT 59.337 33.333 0.00 0.00 0.00 2.29
4796 5264 3.339141 GTGTTGGAGCTTCCCTCTTAAG 58.661 50.000 0.00 0.00 40.57 1.85
4799 5267 4.257731 GTTGGAGCTTCCCTCTTAAGAAG 58.742 47.826 6.63 0.00 41.99 2.85
4814 5282 5.769662 TCTTAAGAAGCTTGCCATTTCTTCA 59.230 36.000 2.10 0.00 40.53 3.02
4832 5300 6.925610 TCTTCAGATCCAAATATTCCAACG 57.074 37.500 0.00 0.00 0.00 4.10
4875 5343 1.982913 GCAATTTCTTTACGCGGGTTG 59.017 47.619 11.50 0.96 0.00 3.77
4936 5405 1.139163 CAGTTTGTTGGCGAAATGGC 58.861 50.000 0.00 0.00 45.12 4.40
4980 5449 7.042456 CCGTATCACAATCCTAGAAAAGATGTG 60.042 40.741 0.00 0.00 36.36 3.21
5037 5506 6.147656 CACATAGTTGTAACAGTCAAGATGCA 59.852 38.462 0.00 0.00 33.76 3.96
5055 5524 9.595823 CAAGATGCATGGATTTTCTCTTTAAAT 57.404 29.630 2.46 0.00 0.00 1.40
5109 5579 7.018635 ACAAATGCCAAAAACAAAGATCTTG 57.981 32.000 9.17 6.08 0.00 3.02
5131 5601 0.322277 CCTCAGTCTGCCAGCACATT 60.322 55.000 0.00 0.00 0.00 2.71
5132 5602 1.531423 CTCAGTCTGCCAGCACATTT 58.469 50.000 0.00 0.00 0.00 2.32
5133 5603 1.467734 CTCAGTCTGCCAGCACATTTC 59.532 52.381 0.00 0.00 0.00 2.17
5134 5604 1.072806 TCAGTCTGCCAGCACATTTCT 59.927 47.619 0.00 0.00 0.00 2.52
5135 5605 2.302733 TCAGTCTGCCAGCACATTTCTA 59.697 45.455 0.00 0.00 0.00 2.10
5136 5606 2.676839 CAGTCTGCCAGCACATTTCTAG 59.323 50.000 0.00 0.00 0.00 2.43
5137 5607 2.568956 AGTCTGCCAGCACATTTCTAGA 59.431 45.455 0.00 0.00 0.00 2.43
5138 5608 2.935201 GTCTGCCAGCACATTTCTAGAG 59.065 50.000 0.00 0.00 0.00 2.43
5139 5609 1.669779 CTGCCAGCACATTTCTAGAGC 59.330 52.381 0.00 0.00 0.00 4.09
5140 5610 1.020437 GCCAGCACATTTCTAGAGCC 58.980 55.000 0.00 0.00 0.00 4.70
5141 5611 1.679944 GCCAGCACATTTCTAGAGCCA 60.680 52.381 0.00 0.00 0.00 4.75
5142 5612 2.012673 CCAGCACATTTCTAGAGCCAC 58.987 52.381 0.00 0.00 0.00 5.01
5143 5613 2.355513 CCAGCACATTTCTAGAGCCACT 60.356 50.000 0.00 0.00 0.00 4.00
5144 5614 3.118629 CCAGCACATTTCTAGAGCCACTA 60.119 47.826 0.00 0.00 0.00 2.74
5221 5691 6.699575 AGAAACCCTGATTATTATGTGTGC 57.300 37.500 0.00 0.00 0.00 4.57
5225 5695 3.876914 CCCTGATTATTATGTGTGCGTGT 59.123 43.478 0.00 0.00 0.00 4.49
5249 5720 2.477863 GCACAAACGCTTGTTGAAGAGT 60.478 45.455 0.43 0.00 43.45 3.24
5250 5721 3.354397 CACAAACGCTTGTTGAAGAGTC 58.646 45.455 0.43 0.00 43.45 3.36
5251 5722 2.354821 ACAAACGCTTGTTGAAGAGTCC 59.645 45.455 0.00 0.00 43.45 3.85
5279 5750 3.947834 AGTTGTGGAACTTGAAGGTTGAG 59.052 43.478 0.00 0.00 39.56 3.02
5318 5789 1.133598 TCGCTATCGATGGAACGTTGT 59.866 47.619 13.60 0.00 40.21 3.32
5331 5802 4.573201 TGGAACGTTGTCTTCCACTAAAAG 59.427 41.667 5.00 0.00 41.92 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 4.082081 ACATTAGAATTGCCCACATGTGTG 60.082 41.667 23.79 14.60 45.23 3.82
7 8 4.088634 ACATTAGAATTGCCCACATGTGT 58.911 39.130 23.79 4.52 0.00 3.72
8 9 4.400251 AGACATTAGAATTGCCCACATGTG 59.600 41.667 19.31 19.31 0.00 3.21
9 10 4.400251 CAGACATTAGAATTGCCCACATGT 59.600 41.667 0.00 0.00 0.00 3.21
10 11 4.735578 GCAGACATTAGAATTGCCCACATG 60.736 45.833 0.00 0.00 0.00 3.21
11 12 3.382546 GCAGACATTAGAATTGCCCACAT 59.617 43.478 0.00 0.00 0.00 3.21
12 13 2.754552 GCAGACATTAGAATTGCCCACA 59.245 45.455 0.00 0.00 0.00 4.17
13 14 2.099756 GGCAGACATTAGAATTGCCCAC 59.900 50.000 2.47 0.00 46.61 4.61
14 15 2.378038 GGCAGACATTAGAATTGCCCA 58.622 47.619 2.47 0.00 46.61 5.36
17 18 3.191162 TGTGTGGCAGACATTAGAATTGC 59.809 43.478 14.10 0.00 36.78 3.56
18 19 4.216042 TGTGTGTGGCAGACATTAGAATTG 59.784 41.667 21.00 0.00 36.78 2.32
19 20 4.397420 TGTGTGTGGCAGACATTAGAATT 58.603 39.130 21.00 0.00 36.78 2.17
20 21 4.005650 CTGTGTGTGGCAGACATTAGAAT 58.994 43.478 21.00 0.00 37.04 2.40
21 22 3.402110 CTGTGTGTGGCAGACATTAGAA 58.598 45.455 21.00 4.17 37.04 2.10
22 23 2.871637 GCTGTGTGTGGCAGACATTAGA 60.872 50.000 25.49 10.70 37.04 2.10
23 24 1.466167 GCTGTGTGTGGCAGACATTAG 59.534 52.381 21.00 20.59 37.04 1.73
24 25 1.522668 GCTGTGTGTGGCAGACATTA 58.477 50.000 21.00 11.93 37.04 1.90
25 26 1.174712 GGCTGTGTGTGGCAGACATT 61.175 55.000 21.00 0.00 41.45 2.71
26 27 1.601759 GGCTGTGTGTGGCAGACAT 60.602 57.895 21.00 0.00 41.45 3.06
27 28 2.203195 GGCTGTGTGTGGCAGACA 60.203 61.111 14.10 14.10 41.45 3.41
28 29 2.980233 GGGCTGTGTGTGGCAGAC 60.980 66.667 8.00 8.00 41.11 3.51
29 30 4.624364 CGGGCTGTGTGTGGCAGA 62.624 66.667 0.00 0.00 36.12 4.26
30 31 4.935495 ACGGGCTGTGTGTGGCAG 62.935 66.667 0.00 0.00 37.06 4.85
44 45 1.380785 TAGGAGGTAGCCCACACGG 60.381 63.158 2.86 0.00 0.00 4.94
45 46 0.683504 AGTAGGAGGTAGCCCACACG 60.684 60.000 2.86 0.00 0.00 4.49
46 47 1.112950 GAGTAGGAGGTAGCCCACAC 58.887 60.000 2.86 0.97 0.00 3.82
47 48 0.708209 TGAGTAGGAGGTAGCCCACA 59.292 55.000 2.86 0.00 0.00 4.17
48 49 1.112950 GTGAGTAGGAGGTAGCCCAC 58.887 60.000 2.86 0.00 0.00 4.61
49 50 0.708209 TGTGAGTAGGAGGTAGCCCA 59.292 55.000 2.86 0.00 0.00 5.36
50 51 1.112950 GTGTGAGTAGGAGGTAGCCC 58.887 60.000 0.00 0.00 0.00 5.19
51 52 1.112950 GGTGTGAGTAGGAGGTAGCC 58.887 60.000 0.00 0.00 0.00 3.93
52 53 1.477295 GTGGTGTGAGTAGGAGGTAGC 59.523 57.143 0.00 0.00 0.00 3.58
53 54 2.492484 GTGTGGTGTGAGTAGGAGGTAG 59.508 54.545 0.00 0.00 0.00 3.18
54 55 2.158430 TGTGTGGTGTGAGTAGGAGGTA 60.158 50.000 0.00 0.00 0.00 3.08
55 56 1.339097 GTGTGGTGTGAGTAGGAGGT 58.661 55.000 0.00 0.00 0.00 3.85
56 57 1.000955 GTGTGTGGTGTGAGTAGGAGG 59.999 57.143 0.00 0.00 0.00 4.30
57 58 1.335964 CGTGTGTGGTGTGAGTAGGAG 60.336 57.143 0.00 0.00 0.00 3.69
58 59 0.671796 CGTGTGTGGTGTGAGTAGGA 59.328 55.000 0.00 0.00 0.00 2.94
59 60 0.319555 CCGTGTGTGGTGTGAGTAGG 60.320 60.000 0.00 0.00 0.00 3.18
60 61 0.387929 ACCGTGTGTGGTGTGAGTAG 59.612 55.000 0.00 0.00 41.85 2.57
61 62 2.507213 ACCGTGTGTGGTGTGAGTA 58.493 52.632 0.00 0.00 41.85 2.59
62 63 3.305314 ACCGTGTGTGGTGTGAGT 58.695 55.556 0.00 0.00 41.85 3.41
74 75 2.664851 ATGCGTCCACACACCGTG 60.665 61.111 0.00 0.00 45.92 4.94
75 76 2.664851 CATGCGTCCACACACCGT 60.665 61.111 0.00 0.00 0.00 4.83
76 77 2.664851 ACATGCGTCCACACACCG 60.665 61.111 0.00 0.00 0.00 4.94
77 78 2.667318 CGACATGCGTCCACACACC 61.667 63.158 0.00 0.00 39.11 4.16
78 79 1.218875 TTCGACATGCGTCCACACAC 61.219 55.000 8.91 0.00 39.11 3.82
79 80 0.320334 ATTCGACATGCGTCCACACA 60.320 50.000 8.91 0.00 39.11 3.72
80 81 1.635844 TATTCGACATGCGTCCACAC 58.364 50.000 8.91 0.00 39.11 3.82
81 82 2.595124 ATATTCGACATGCGTCCACA 57.405 45.000 8.91 0.00 39.11 4.17
82 83 4.090066 GTGATATATTCGACATGCGTCCAC 59.910 45.833 8.91 0.00 39.11 4.02
83 84 4.234574 GTGATATATTCGACATGCGTCCA 58.765 43.478 8.91 0.00 39.11 4.02
84 85 4.090066 GTGTGATATATTCGACATGCGTCC 59.910 45.833 8.91 0.00 39.11 4.79
85 86 4.201400 CGTGTGATATATTCGACATGCGTC 60.201 45.833 8.91 0.00 41.80 5.19
86 87 3.668656 CGTGTGATATATTCGACATGCGT 59.331 43.478 8.91 0.00 41.80 5.24
87 88 3.668656 ACGTGTGATATATTCGACATGCG 59.331 43.478 0.00 0.00 42.69 4.73
88 89 4.444388 ACACGTGTGATATATTCGACATGC 59.556 41.667 22.71 0.00 31.25 4.06
103 104 1.460743 CTGATAACTGCCACACGTGTG 59.539 52.381 36.13 36.13 45.23 3.82
104 105 1.795768 CTGATAACTGCCACACGTGT 58.204 50.000 17.22 17.22 0.00 4.49
105 106 0.443869 GCTGATAACTGCCACACGTG 59.556 55.000 15.48 15.48 35.44 4.49
106 107 1.014044 CGCTGATAACTGCCACACGT 61.014 55.000 0.00 0.00 37.62 4.49
107 108 1.014044 ACGCTGATAACTGCCACACG 61.014 55.000 0.00 0.00 37.62 4.49
108 109 0.721718 GACGCTGATAACTGCCACAC 59.278 55.000 0.00 0.00 37.62 3.82
109 110 0.391130 GGACGCTGATAACTGCCACA 60.391 55.000 0.00 0.00 37.62 4.17
110 111 0.391130 TGGACGCTGATAACTGCCAC 60.391 55.000 0.00 0.00 37.62 5.01
111 112 0.323302 TTGGACGCTGATAACTGCCA 59.677 50.000 0.00 0.00 37.62 4.92
112 113 1.448985 TTTGGACGCTGATAACTGCC 58.551 50.000 0.00 0.00 37.62 4.85
113 114 2.225491 TGTTTTGGACGCTGATAACTGC 59.775 45.455 0.00 0.00 37.56 4.40
114 115 4.481930 TTGTTTTGGACGCTGATAACTG 57.518 40.909 0.00 0.00 0.00 3.16
115 116 5.508200 TTTTGTTTTGGACGCTGATAACT 57.492 34.783 0.00 0.00 0.00 2.24
116 117 4.148174 GCTTTTGTTTTGGACGCTGATAAC 59.852 41.667 0.00 0.00 0.00 1.89
117 118 4.202060 TGCTTTTGTTTTGGACGCTGATAA 60.202 37.500 0.00 0.00 0.00 1.75
118 119 3.316588 TGCTTTTGTTTTGGACGCTGATA 59.683 39.130 0.00 0.00 0.00 2.15
119 120 2.100584 TGCTTTTGTTTTGGACGCTGAT 59.899 40.909 0.00 0.00 0.00 2.90
120 121 1.474478 TGCTTTTGTTTTGGACGCTGA 59.526 42.857 0.00 0.00 0.00 4.26
121 122 1.919918 TGCTTTTGTTTTGGACGCTG 58.080 45.000 0.00 0.00 0.00 5.18
122 123 2.888834 ATGCTTTTGTTTTGGACGCT 57.111 40.000 0.00 0.00 0.00 5.07
123 124 3.308323 TCAAATGCTTTTGTTTTGGACGC 59.692 39.130 20.69 0.00 42.37 5.19
124 125 5.290643 TCTTCAAATGCTTTTGTTTTGGACG 59.709 36.000 20.69 3.17 42.37 4.79
125 126 6.238184 CCTCTTCAAATGCTTTTGTTTTGGAC 60.238 38.462 20.69 0.00 42.37 4.02
126 127 5.816777 CCTCTTCAAATGCTTTTGTTTTGGA 59.183 36.000 20.69 12.90 42.37 3.53
127 128 5.816777 TCCTCTTCAAATGCTTTTGTTTTGG 59.183 36.000 20.69 17.90 42.37 3.28
128 129 6.907206 TCCTCTTCAAATGCTTTTGTTTTG 57.093 33.333 20.69 11.88 42.37 2.44
129 130 6.037500 GCTTCCTCTTCAAATGCTTTTGTTTT 59.962 34.615 20.69 0.00 42.37 2.43
130 131 5.525012 GCTTCCTCTTCAAATGCTTTTGTTT 59.475 36.000 20.69 0.00 42.37 2.83
131 132 5.052481 GCTTCCTCTTCAAATGCTTTTGTT 58.948 37.500 20.69 0.00 42.37 2.83
132 133 4.099881 TGCTTCCTCTTCAAATGCTTTTGT 59.900 37.500 20.69 0.00 42.37 2.83
133 134 4.624015 TGCTTCCTCTTCAAATGCTTTTG 58.376 39.130 16.77 16.77 42.98 2.44
134 135 4.942761 TGCTTCCTCTTCAAATGCTTTT 57.057 36.364 0.00 0.00 0.00 2.27
135 136 4.942761 TTGCTTCCTCTTCAAATGCTTT 57.057 36.364 0.00 0.00 0.00 3.51
136 137 4.942761 TTTGCTTCCTCTTCAAATGCTT 57.057 36.364 0.00 0.00 0.00 3.91
137 138 4.942761 TTTTGCTTCCTCTTCAAATGCT 57.057 36.364 0.00 0.00 30.89 3.79
138 139 4.810491 TGTTTTTGCTTCCTCTTCAAATGC 59.190 37.500 0.00 0.00 30.89 3.56
139 140 8.592105 TTATGTTTTTGCTTCCTCTTCAAATG 57.408 30.769 0.00 0.00 30.89 2.32
140 141 9.783081 AATTATGTTTTTGCTTCCTCTTCAAAT 57.217 25.926 0.00 0.00 30.89 2.32
142 143 9.912634 CTAATTATGTTTTTGCTTCCTCTTCAA 57.087 29.630 0.00 0.00 0.00 2.69
143 144 8.028938 GCTAATTATGTTTTTGCTTCCTCTTCA 58.971 33.333 0.00 0.00 0.00 3.02
144 145 8.028938 TGCTAATTATGTTTTTGCTTCCTCTTC 58.971 33.333 0.00 0.00 0.00 2.87
145 146 7.895759 TGCTAATTATGTTTTTGCTTCCTCTT 58.104 30.769 0.00 0.00 0.00 2.85
146 147 7.177392 ACTGCTAATTATGTTTTTGCTTCCTCT 59.823 33.333 0.00 0.00 0.00 3.69
147 148 7.274250 CACTGCTAATTATGTTTTTGCTTCCTC 59.726 37.037 0.00 0.00 0.00 3.71
148 149 7.039784 TCACTGCTAATTATGTTTTTGCTTCCT 60.040 33.333 0.00 0.00 0.00 3.36
149 150 7.090173 TCACTGCTAATTATGTTTTTGCTTCC 58.910 34.615 0.00 0.00 0.00 3.46
150 151 8.023128 TCTCACTGCTAATTATGTTTTTGCTTC 58.977 33.333 0.00 0.00 0.00 3.86
151 152 7.885297 TCTCACTGCTAATTATGTTTTTGCTT 58.115 30.769 0.00 0.00 0.00 3.91
152 153 7.452880 TCTCACTGCTAATTATGTTTTTGCT 57.547 32.000 0.00 0.00 0.00 3.91
153 154 6.252228 GCTCTCACTGCTAATTATGTTTTTGC 59.748 38.462 0.00 0.00 0.00 3.68
154 155 7.307694 TGCTCTCACTGCTAATTATGTTTTTG 58.692 34.615 0.00 0.00 0.00 2.44
155 156 7.391554 TCTGCTCTCACTGCTAATTATGTTTTT 59.608 33.333 0.00 0.00 0.00 1.94
156 157 6.881065 TCTGCTCTCACTGCTAATTATGTTTT 59.119 34.615 0.00 0.00 0.00 2.43
157 158 6.409704 TCTGCTCTCACTGCTAATTATGTTT 58.590 36.000 0.00 0.00 0.00 2.83
158 159 5.982356 TCTGCTCTCACTGCTAATTATGTT 58.018 37.500 0.00 0.00 0.00 2.71
159 160 5.604758 TCTGCTCTCACTGCTAATTATGT 57.395 39.130 0.00 0.00 0.00 2.29
160 161 6.915544 TTTCTGCTCTCACTGCTAATTATG 57.084 37.500 0.00 0.00 0.00 1.90
161 162 6.709846 GGATTTCTGCTCTCACTGCTAATTAT 59.290 38.462 0.00 0.00 0.00 1.28
162 163 6.051717 GGATTTCTGCTCTCACTGCTAATTA 58.948 40.000 0.00 0.00 0.00 1.40
163 164 4.880696 GGATTTCTGCTCTCACTGCTAATT 59.119 41.667 0.00 0.00 0.00 1.40
164 165 4.450053 GGATTTCTGCTCTCACTGCTAAT 58.550 43.478 0.00 0.00 0.00 1.73
165 166 3.369892 GGGATTTCTGCTCTCACTGCTAA 60.370 47.826 0.00 0.00 0.00 3.09
166 167 2.169352 GGGATTTCTGCTCTCACTGCTA 59.831 50.000 0.00 0.00 0.00 3.49
167 168 1.065564 GGGATTTCTGCTCTCACTGCT 60.066 52.381 0.00 0.00 0.00 4.24
168 169 1.377536 GGGATTTCTGCTCTCACTGC 58.622 55.000 0.00 0.00 0.00 4.40
169 170 1.280133 TGGGGATTTCTGCTCTCACTG 59.720 52.381 0.00 0.00 0.00 3.66
170 171 1.661463 TGGGGATTTCTGCTCTCACT 58.339 50.000 0.00 0.00 0.00 3.41
171 172 2.725221 ATGGGGATTTCTGCTCTCAC 57.275 50.000 0.00 0.00 0.00 3.51
172 173 2.105477 GCTATGGGGATTTCTGCTCTCA 59.895 50.000 0.00 0.00 0.00 3.27
173 174 2.105477 TGCTATGGGGATTTCTGCTCTC 59.895 50.000 0.00 0.00 0.00 3.20
174 175 2.130193 TGCTATGGGGATTTCTGCTCT 58.870 47.619 0.00 0.00 0.00 4.09
175 176 2.645838 TGCTATGGGGATTTCTGCTC 57.354 50.000 0.00 0.00 0.00 4.26
176 177 3.139770 AGATTGCTATGGGGATTTCTGCT 59.860 43.478 0.00 0.00 0.00 4.24
177 178 3.494332 AGATTGCTATGGGGATTTCTGC 58.506 45.455 0.00 0.00 0.00 4.26
178 179 5.383476 AGAAGATTGCTATGGGGATTTCTG 58.617 41.667 0.00 0.00 0.00 3.02
179 180 5.457342 GGAGAAGATTGCTATGGGGATTTCT 60.457 44.000 0.00 0.00 0.00 2.52
180 181 4.764308 GGAGAAGATTGCTATGGGGATTTC 59.236 45.833 0.00 0.00 0.00 2.17
181 182 4.418190 AGGAGAAGATTGCTATGGGGATTT 59.582 41.667 0.00 0.00 0.00 2.17
182 183 3.986134 AGGAGAAGATTGCTATGGGGATT 59.014 43.478 0.00 0.00 0.00 3.01
183 184 3.606972 AGGAGAAGATTGCTATGGGGAT 58.393 45.455 0.00 0.00 0.00 3.85
184 185 3.066208 AGGAGAAGATTGCTATGGGGA 57.934 47.619 0.00 0.00 0.00 4.81
185 186 3.872459 AAGGAGAAGATTGCTATGGGG 57.128 47.619 0.00 0.00 0.00 4.96
186 187 4.759183 GCTTAAGGAGAAGATTGCTATGGG 59.241 45.833 4.29 0.00 0.00 4.00
187 188 5.371526 TGCTTAAGGAGAAGATTGCTATGG 58.628 41.667 4.29 0.00 0.00 2.74
188 189 6.709397 TGATGCTTAAGGAGAAGATTGCTATG 59.291 38.462 4.29 0.00 0.00 2.23
189 190 6.835174 TGATGCTTAAGGAGAAGATTGCTAT 58.165 36.000 4.29 0.00 0.00 2.97
190 191 6.098838 TCTGATGCTTAAGGAGAAGATTGCTA 59.901 38.462 4.29 0.00 0.00 3.49
191 192 5.104610 TCTGATGCTTAAGGAGAAGATTGCT 60.105 40.000 4.29 0.00 0.00 3.91
192 193 5.121811 TCTGATGCTTAAGGAGAAGATTGC 58.878 41.667 4.29 0.00 0.00 3.56
193 194 6.766944 ACATCTGATGCTTAAGGAGAAGATTG 59.233 38.462 17.24 14.71 0.00 2.67
194 195 6.897986 ACATCTGATGCTTAAGGAGAAGATT 58.102 36.000 17.24 9.34 0.00 2.40
195 196 6.497624 ACATCTGATGCTTAAGGAGAAGAT 57.502 37.500 17.24 14.69 0.00 2.40
196 197 5.946942 ACATCTGATGCTTAAGGAGAAGA 57.053 39.130 17.24 12.01 0.00 2.87
197 198 8.674263 AAATACATCTGATGCTTAAGGAGAAG 57.326 34.615 17.24 3.63 0.00 2.85
198 199 7.716998 GGAAATACATCTGATGCTTAAGGAGAA 59.283 37.037 17.24 0.00 0.00 2.87
199 200 7.220030 GGAAATACATCTGATGCTTAAGGAGA 58.780 38.462 17.24 0.00 0.00 3.71
200 201 6.429385 GGGAAATACATCTGATGCTTAAGGAG 59.571 42.308 17.24 0.00 0.00 3.69
201 202 6.299141 GGGAAATACATCTGATGCTTAAGGA 58.701 40.000 17.24 0.78 0.00 3.36
202 203 5.180117 CGGGAAATACATCTGATGCTTAAGG 59.820 44.000 17.24 0.00 0.00 2.69
223 224 9.677567 CAATTATTTCTTGGTATTTATGACGGG 57.322 33.333 0.00 0.00 0.00 5.28
240 241 6.827641 TCATAATACGCGAGCCAATTATTTC 58.172 36.000 15.93 0.00 0.00 2.17
241 242 6.795098 TCATAATACGCGAGCCAATTATTT 57.205 33.333 15.93 0.00 0.00 1.40
250 251 0.435008 CGGCTTCATAATACGCGAGC 59.565 55.000 15.93 8.61 0.00 5.03
252 253 2.228103 AGATCGGCTTCATAATACGCGA 59.772 45.455 15.93 0.00 0.00 5.87
253 254 2.596452 AGATCGGCTTCATAATACGCG 58.404 47.619 3.53 3.53 0.00 6.01
308 309 1.612726 GCTGGTGAGGCTGTTCTGAAT 60.613 52.381 0.00 0.00 0.00 2.57
330 331 4.713814 TGATAGAGCTTGTGAGGTTGATCT 59.286 41.667 0.00 0.00 32.79 2.75
345 346 8.181904 TGGGATTGGAAAATTATTGATAGAGC 57.818 34.615 0.00 0.00 0.00 4.09
394 399 8.179367 CTGTTAGGTCAGAGAAACGACAAACG 62.179 46.154 0.00 0.00 41.51 3.60
488 499 0.968901 AGAGACCGGTTACATCGCCA 60.969 55.000 9.42 0.00 0.00 5.69
542 553 2.289547 ACCATCCGAAACAAACACTTCG 59.710 45.455 0.00 0.00 43.12 3.79
731 756 0.867753 GTAGACATGCCTCGTGCGAG 60.868 60.000 13.99 13.99 45.60 5.03
734 759 1.002366 CAAGTAGACATGCCTCGTGC 58.998 55.000 0.00 0.00 41.77 5.34
743 768 3.513119 TCAGAGCAAGAGCAAGTAGACAT 59.487 43.478 0.00 0.00 45.49 3.06
760 785 1.538950 GCTGGCTCAAAAGGTTCAGAG 59.461 52.381 0.00 0.00 0.00 3.35
761 786 1.609208 GCTGGCTCAAAAGGTTCAGA 58.391 50.000 0.00 0.00 0.00 3.27
782 807 3.323979 AGTTACACGAATCCTGTTCCTGT 59.676 43.478 0.00 0.00 0.00 4.00
783 808 3.926616 AGTTACACGAATCCTGTTCCTG 58.073 45.455 0.00 0.00 0.00 3.86
784 809 3.367087 CGAGTTACACGAATCCTGTTCCT 60.367 47.826 0.00 0.00 0.00 3.36
785 810 2.921754 CGAGTTACACGAATCCTGTTCC 59.078 50.000 0.00 0.00 0.00 3.62
786 811 3.364023 CACGAGTTACACGAATCCTGTTC 59.636 47.826 9.40 0.00 34.70 3.18
787 812 3.005050 TCACGAGTTACACGAATCCTGTT 59.995 43.478 9.40 0.00 34.70 3.16
829 854 2.229062 CAGGAGTCACACACGAGTATGT 59.771 50.000 0.00 0.00 0.00 2.29
839 864 2.665603 GGCTCCCAGGAGTCACAC 59.334 66.667 13.47 0.00 45.40 3.82
885 916 1.544314 GCTGGACATTCCTATCTGGGC 60.544 57.143 0.00 0.00 37.46 5.36
903 934 7.119992 CAGAGTTCAGTATATACATAGGTCGCT 59.880 40.741 15.18 4.92 0.00 4.93
911 942 8.988546 AGTGAGTCAGAGTTCAGTATATACAT 57.011 34.615 15.18 0.00 0.00 2.29
1005 1051 0.249676 TAATTACGCCCCTTGTCGCA 59.750 50.000 0.00 0.00 0.00 5.10
1032 1078 2.776913 CGGCGAGAGAGGAGAACCC 61.777 68.421 0.00 0.00 36.73 4.11
1172 1221 0.170561 AAACGAGACGACCGAGATGG 59.829 55.000 0.00 0.00 46.41 3.51
1178 1227 1.762419 TCAAAGAAACGAGACGACCG 58.238 50.000 0.00 0.00 0.00 4.79
1213 1262 4.500603 AGAAGAAGAAGCTGTTTGCATG 57.499 40.909 0.00 0.00 45.94 4.06
1221 1270 8.295288 ACAAACATATCAAAGAAGAAGAAGCTG 58.705 33.333 0.00 0.00 0.00 4.24
1243 1292 9.413048 CGAAAGCCTATTTTGGTATAAAACAAA 57.587 29.630 0.00 0.00 35.01 2.83
1244 1293 8.973835 CGAAAGCCTATTTTGGTATAAAACAA 57.026 30.769 0.00 0.00 0.00 2.83
1264 1313 7.757624 TGCTTTATTTATAAAGTTGGGCGAAAG 59.242 33.333 18.51 4.84 46.78 2.62
1265 1314 7.603651 TGCTTTATTTATAAAGTTGGGCGAAA 58.396 30.769 18.51 0.00 46.78 3.46
1266 1315 7.159322 TGCTTTATTTATAAAGTTGGGCGAA 57.841 32.000 18.51 0.00 46.78 4.70
1267 1316 6.761099 TGCTTTATTTATAAAGTTGGGCGA 57.239 33.333 18.51 0.76 46.78 5.54
1268 1317 7.820044 TTTGCTTTATTTATAAAGTTGGGCG 57.180 32.000 18.51 0.00 46.78 6.13
1269 1318 9.986833 CAATTTGCTTTATTTATAAAGTTGGGC 57.013 29.630 18.51 9.14 46.78 5.36
1285 1334 9.662545 GTTTGCATGTATAAAACAATTTGCTTT 57.337 25.926 3.51 3.51 42.70 3.51
1286 1335 8.834465 TGTTTGCATGTATAAAACAATTTGCTT 58.166 25.926 12.56 0.00 42.70 3.91
1287 1336 8.375608 TGTTTGCATGTATAAAACAATTTGCT 57.624 26.923 12.56 0.00 42.70 3.91
1288 1337 7.268872 GCTGTTTGCATGTATAAAACAATTTGC 59.731 33.333 14.57 11.83 41.74 3.68
1289 1338 8.497554 AGCTGTTTGCATGTATAAAACAATTTG 58.502 29.630 14.57 0.00 41.74 2.32
1290 1339 8.606040 AGCTGTTTGCATGTATAAAACAATTT 57.394 26.923 14.57 5.59 41.74 1.82
1291 1340 8.606040 AAGCTGTTTGCATGTATAAAACAATT 57.394 26.923 14.57 11.18 41.74 2.32
1292 1341 8.090214 AGAAGCTGTTTGCATGTATAAAACAAT 58.910 29.630 14.57 7.62 41.74 2.71
1293 1342 7.432869 AGAAGCTGTTTGCATGTATAAAACAA 58.567 30.769 14.57 0.00 41.74 2.83
1294 1343 6.980593 AGAAGCTGTTTGCATGTATAAAACA 58.019 32.000 13.61 13.61 45.94 2.83
1295 1344 7.809806 AGAAGAAGCTGTTTGCATGTATAAAAC 59.190 33.333 0.00 1.96 45.94 2.43
1296 1345 7.885297 AGAAGAAGCTGTTTGCATGTATAAAA 58.115 30.769 0.00 0.00 45.94 1.52
1297 1346 7.452880 AGAAGAAGCTGTTTGCATGTATAAA 57.547 32.000 0.00 0.00 45.94 1.40
1303 1352 4.500603 AGAAGAAGAAGCTGTTTGCATG 57.499 40.909 0.00 0.00 45.94 4.06
1305 1354 4.202441 AGAAGAAGAAGAAGCTGTTTGCA 58.798 39.130 0.00 0.00 45.94 4.08
1319 1368 9.450807 CGCAAAAATTAAAGAAGAAGAAGAAGA 57.549 29.630 0.00 0.00 0.00 2.87
1320 1369 9.237846 ACGCAAAAATTAAAGAAGAAGAAGAAG 57.762 29.630 0.00 0.00 0.00 2.85
1321 1370 9.581099 AACGCAAAAATTAAAGAAGAAGAAGAA 57.419 25.926 0.00 0.00 0.00 2.52
1322 1371 9.233232 GAACGCAAAAATTAAAGAAGAAGAAGA 57.767 29.630 0.00 0.00 0.00 2.87
1323 1372 8.201401 CGAACGCAAAAATTAAAGAAGAAGAAG 58.799 33.333 0.00 0.00 0.00 2.85
1324 1373 7.911205 TCGAACGCAAAAATTAAAGAAGAAGAA 59.089 29.630 0.00 0.00 0.00 2.52
1395 1446 3.290948 TGGCCACTGTTGTAAAGAACT 57.709 42.857 0.00 0.00 0.00 3.01
1420 1471 2.177594 CTCCGACTTCCAGCTGCCTT 62.178 60.000 8.66 0.00 0.00 4.35
1578 1705 5.245751 TCACATGCAAATTTTGGTAGATGGT 59.754 36.000 10.96 0.00 0.00 3.55
1656 1783 5.194432 AGTCTCGCTAACCTTCTTCTGATA 58.806 41.667 0.00 0.00 0.00 2.15
1673 1800 1.135660 TGCTGCTTCGTTCTAGTCTCG 60.136 52.381 0.00 0.00 0.00 4.04
1756 1883 3.292500 GAGGCAGGCAAAGGCAAGC 62.293 63.158 0.00 0.00 43.71 4.01
1853 1980 3.385433 CAGCAAAATGCCTGGATATTCCA 59.615 43.478 0.00 0.00 46.52 3.53
1863 1990 2.097825 GATCTCACCAGCAAAATGCCT 58.902 47.619 0.00 0.00 46.52 4.75
1993 2120 1.179174 TGTCAGACACCCTCTCACCG 61.179 60.000 0.00 0.00 0.00 4.94
2286 2607 3.495753 TGATAAGCTATCTGCAACATGCG 59.504 43.478 0.00 0.00 45.94 4.73
2511 2832 4.060205 ACGTTGTGGGTACAAGTATGTTC 58.940 43.478 0.00 0.00 46.75 3.18
2537 2860 5.462405 CGAACACATCCTAAGGCTATCTAC 58.538 45.833 0.00 0.00 0.00 2.59
2589 2912 0.038526 AGCTACAAGGTGACGGTTCG 60.039 55.000 0.00 0.00 0.00 3.95
2684 3013 9.935682 CTACCTATAACAACACAAAAGCATATG 57.064 33.333 0.00 0.00 0.00 1.78
2751 3162 6.018589 TCGATGTTCATCTTATGCTCTAGG 57.981 41.667 10.44 0.00 0.00 3.02
2775 3186 7.765307 TCTGATGCTCCATAAAGTCAAATTTC 58.235 34.615 0.00 0.00 0.00 2.17
2776 3187 7.707624 TCTGATGCTCCATAAAGTCAAATTT 57.292 32.000 0.00 0.00 0.00 1.82
2886 3299 2.551071 GCCGAGGCCTGCTTAAGATATT 60.551 50.000 12.00 0.00 34.56 1.28
2904 3317 2.005451 CAGGTCTTGATTTCTCTGCCG 58.995 52.381 0.00 0.00 0.00 5.69
3025 3438 4.454161 TCAATAAGACGATTGTTGGTGGTG 59.546 41.667 12.05 0.00 37.92 4.17
3261 3675 4.639078 TGTGGTGAGATTCTCCAATTCA 57.361 40.909 11.12 2.26 41.15 2.57
3356 3770 1.561643 TCCCACCTGCACAACAAAAA 58.438 45.000 0.00 0.00 0.00 1.94
3358 3772 2.666272 TATCCCACCTGCACAACAAA 57.334 45.000 0.00 0.00 0.00 2.83
3483 3897 4.799564 ACAAAGTGTTTGGTGACATTGT 57.200 36.364 4.52 0.00 44.81 2.71
3592 4010 5.381174 TTTCTCATCAAATCTTGCCACTG 57.619 39.130 0.00 0.00 0.00 3.66
3651 4069 4.422057 TGTACTCCTCTGGTGTTGGAATA 58.578 43.478 0.00 0.00 31.55 1.75
3681 4099 0.384974 ATGCAAACGTAACAACCGCG 60.385 50.000 0.00 0.00 0.00 6.46
3921 4345 8.974060 TTTCCCTTGGAGTGTGATAATATTAC 57.026 34.615 0.00 0.00 31.21 1.89
3977 4401 4.920376 ACAGCAACATAGTCAACAACAAC 58.080 39.130 0.00 0.00 0.00 3.32
3996 4420 3.504134 CCATCGATGTACTCCCTCTACAG 59.496 52.174 23.27 0.00 0.00 2.74
4052 4476 2.433318 GTCAGCGAGCCACCACTC 60.433 66.667 0.00 0.00 0.00 3.51
4065 4489 2.607811 TGGCCTCTGGTATGGTCAG 58.392 57.895 3.32 0.00 32.43 3.51
4115 4539 4.654262 ACCAACCTCAACAAGTCTCTTCTA 59.346 41.667 0.00 0.00 0.00 2.10
4247 4671 1.227823 CACCGCACCAACCTTCTCA 60.228 57.895 0.00 0.00 0.00 3.27
4309 4733 1.186267 GGACAAGTCGAGACCAGGGT 61.186 60.000 0.00 0.00 0.00 4.34
4367 4791 7.939039 ACCTACAATGATATGTACAAATGAGGG 59.061 37.037 0.00 4.24 34.75 4.30
4550 5001 7.649533 TCCTCATTAGTGAAAATACCGTAGA 57.350 36.000 0.00 0.00 33.05 2.59
4551 5002 8.601476 GTTTCCTCATTAGTGAAAATACCGTAG 58.399 37.037 0.00 0.00 33.05 3.51
4694 5152 1.686052 AGATCGCCTTCTCAGATGGAC 59.314 52.381 10.89 1.44 0.00 4.02
4738 5196 8.399425 TGAAGAAAGAGTTAATACGTTTGCAAA 58.601 29.630 8.05 8.05 0.00 3.68
4796 5264 4.439837 GGATCTGAAGAAATGGCAAGCTTC 60.440 45.833 15.91 15.91 37.76 3.86
4799 5267 2.756760 TGGATCTGAAGAAATGGCAAGC 59.243 45.455 0.00 0.00 0.00 4.01
4814 5282 4.080015 TGGGACGTTGGAATATTTGGATCT 60.080 41.667 0.00 0.00 0.00 2.75
4832 5300 6.127647 TGCTCTTGATGTCATTATTTTGGGAC 60.128 38.462 0.00 0.00 0.00 4.46
4875 5343 3.133141 AGAGTCCTTCTGGCTTTTCAC 57.867 47.619 0.00 0.00 33.93 3.18
4936 5405 1.131883 CGGCTCAAAGCTTCTGGAATG 59.868 52.381 0.00 0.00 41.99 2.67
4980 5449 6.339587 TGATAACATTGAAGAAACAACCCC 57.660 37.500 0.00 0.00 32.50 4.95
5062 5531 6.934083 TGTTGCATGATAGAGTTAACACAAGA 59.066 34.615 8.61 0.00 0.00 3.02
5099 5568 3.436015 CAGACTGAGGCACAAGATCTTTG 59.564 47.826 4.86 8.96 0.00 2.77
5109 5579 2.745492 GCTGGCAGACTGAGGCAC 60.745 66.667 20.86 0.00 36.56 5.01
5131 5601 6.595326 CACATCATTGTTTAGTGGCTCTAGAA 59.405 38.462 0.00 0.00 32.34 2.10
5132 5602 6.108687 CACATCATTGTTTAGTGGCTCTAGA 58.891 40.000 0.00 0.00 32.34 2.43
5133 5603 5.877012 ACACATCATTGTTTAGTGGCTCTAG 59.123 40.000 0.00 0.00 32.34 2.43
5134 5604 5.643348 CACACATCATTGTTTAGTGGCTCTA 59.357 40.000 0.00 0.00 32.34 2.43
5135 5605 4.456911 CACACATCATTGTTTAGTGGCTCT 59.543 41.667 0.00 0.00 32.34 4.09
5136 5606 4.726416 CACACATCATTGTTTAGTGGCTC 58.274 43.478 0.00 0.00 32.34 4.70
5137 5607 3.057315 GCACACATCATTGTTTAGTGGCT 60.057 43.478 0.00 0.00 32.34 4.75
5138 5608 3.057315 AGCACACATCATTGTTTAGTGGC 60.057 43.478 0.00 0.00 32.34 5.01
5139 5609 4.771590 AGCACACATCATTGTTTAGTGG 57.228 40.909 0.00 0.00 32.34 4.00
5140 5610 5.978919 ACAAAGCACACATCATTGTTTAGTG 59.021 36.000 0.00 0.00 32.34 2.74
5141 5611 6.147864 ACAAAGCACACATCATTGTTTAGT 57.852 33.333 0.00 0.00 32.34 2.24
5142 5612 7.274033 CCATACAAAGCACACATCATTGTTTAG 59.726 37.037 0.00 0.00 35.89 1.85
5143 5613 7.089538 CCATACAAAGCACACATCATTGTTTA 58.910 34.615 0.00 0.00 35.89 2.01
5144 5614 5.927689 CCATACAAAGCACACATCATTGTTT 59.072 36.000 0.00 0.00 35.89 2.83
5241 5712 2.100252 ACAACTTCGACGGACTCTTCAA 59.900 45.455 0.00 0.00 0.00 2.69
5249 5720 0.748450 AGTTCCACAACTTCGACGGA 59.252 50.000 0.00 0.00 40.16 4.69
5250 5721 3.284197 AGTTCCACAACTTCGACGG 57.716 52.632 0.00 0.00 40.16 4.79
5279 5750 1.668151 GGCGTCTGTGGTGACTTCC 60.668 63.158 0.00 0.00 35.00 3.46
5318 5789 9.793259 AATGTGAATTAGTCTTTTAGTGGAAGA 57.207 29.630 0.00 0.00 0.00 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.