Multiple sequence alignment - TraesCS2A01G425400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G425400 chr2A 100.000 6927 0 0 1 6927 679268800 679261874 0.000000e+00 12792.0
1 TraesCS2A01G425400 chr2A 77.229 2187 412 63 2855 5006 678969694 678967559 0.000000e+00 1201.0
2 TraesCS2A01G425400 chr2A 74.288 2213 477 64 2835 4993 682613131 682610957 0.000000e+00 850.0
3 TraesCS2A01G425400 chr2A 76.554 1062 193 31 3120 4166 756953066 756952046 1.320000e-146 531.0
4 TraesCS2A01G425400 chr2A 77.879 330 67 6 5585 5911 678966967 678966641 4.240000e-47 200.0
5 TraesCS2A01G425400 chr2A 78.370 319 62 5 5620 5935 733680882 733680568 4.240000e-47 200.0
6 TraesCS2A01G425400 chr2A 79.032 248 48 4 75 320 421494947 421494702 4.300000e-37 167.0
7 TraesCS2A01G425400 chr2A 78.992 238 45 4 1844 2077 12964501 12964265 2.590000e-34 158.0
8 TraesCS2A01G425400 chr2A 90.909 44 3 1 5045 5087 202838831 202838788 2.700000e-04 58.4
9 TraesCS2A01G425400 chr2D 97.459 2558 58 5 2679 5232 536509627 536507073 0.000000e+00 4357.0
10 TraesCS2A01G425400 chr2D 90.854 1804 123 29 711 2479 536511449 536509653 0.000000e+00 2379.0
11 TraesCS2A01G425400 chr2D 77.372 2192 400 69 2855 5006 536157741 536155606 0.000000e+00 1212.0
12 TraesCS2A01G425400 chr2D 95.699 744 23 2 5281 6024 536506783 536506049 0.000000e+00 1188.0
13 TraesCS2A01G425400 chr2D 76.826 1739 309 68 3312 5009 536226210 536224525 0.000000e+00 893.0
14 TraesCS2A01G425400 chr2D 75.139 1621 340 50 2835 4419 539310858 539309265 0.000000e+00 702.0
15 TraesCS2A01G425400 chr2D 81.563 499 81 10 4522 5016 536383076 536382585 1.080000e-107 401.0
16 TraesCS2A01G425400 chr2D 78.873 497 102 3 2855 3350 536226723 536226229 4.000000e-87 333.0
17 TraesCS2A01G425400 chr2D 80.479 292 53 4 5622 5911 536155124 536154835 3.250000e-53 220.0
18 TraesCS2A01G425400 chr2D 75.442 452 89 15 3525 3956 536384305 536383856 4.240000e-47 200.0
19 TraesCS2A01G425400 chr2D 79.054 296 58 2 5620 5913 599944948 599944655 4.240000e-47 200.0
20 TraesCS2A01G425400 chr2D 78.322 286 59 2 1796 2078 12329425 12329710 1.530000e-41 182.0
21 TraesCS2A01G425400 chr2D 78.715 249 49 4 1808 2054 536386219 536385973 5.560000e-36 163.0
22 TraesCS2A01G425400 chr2D 90.909 121 6 3 6017 6135 536504963 536504846 2.590000e-34 158.0
23 TraesCS2A01G425400 chr2D 78.571 238 46 4 1844 2077 12387939 12387703 1.200000e-32 152.0
24 TraesCS2A01G425400 chr2D 92.079 101 8 0 2497 2597 41862366 41862466 7.240000e-30 143.0
25 TraesCS2A01G425400 chr2B 94.871 2788 100 16 2679 5458 638758327 638755575 0.000000e+00 4316.0
26 TraesCS2A01G425400 chr2B 91.218 1765 97 27 711 2420 638760111 638758350 0.000000e+00 2348.0
27 TraesCS2A01G425400 chr2B 77.298 2198 398 75 2855 5009 638264793 638262654 0.000000e+00 1201.0
28 TraesCS2A01G425400 chr2B 77.238 2201 393 80 2855 5009 637767813 637765675 0.000000e+00 1190.0
29 TraesCS2A01G425400 chr2B 93.855 537 25 5 5589 6120 638755335 638754802 0.000000e+00 802.0
30 TraesCS2A01G425400 chr2B 74.566 1612 325 58 2835 4398 643202619 643201045 1.640000e-175 627.0
31 TraesCS2A01G425400 chr2B 86.596 567 61 10 3765 4329 17173565 17173012 4.590000e-171 612.0
32 TraesCS2A01G425400 chr2B 81.100 291 53 2 5622 5911 638262147 638261858 1.500000e-56 231.0
33 TraesCS2A01G425400 chr2B 74.124 599 128 24 35 613 52628102 52627511 9.040000e-54 222.0
34 TraesCS2A01G425400 chr2B 78.056 319 68 2 5595 5911 637582862 637582544 4.240000e-47 200.0
35 TraesCS2A01G425400 chr2B 80.952 252 46 2 5661 5911 637993493 637993243 1.520000e-46 198.0
36 TraesCS2A01G425400 chr2B 78.409 264 53 4 99 361 778453738 778453478 1.190000e-37 169.0
37 TraesCS2A01G425400 chr2B 76.052 309 66 6 1776 2077 18714380 18714073 3.350000e-33 154.0
38 TraesCS2A01G425400 chr2B 76.052 309 66 6 1776 2077 18724338 18724031 3.350000e-33 154.0
39 TraesCS2A01G425400 chr2B 91.176 68 3 1 5492 5556 638755589 638755522 9.570000e-14 89.8
40 TraesCS2A01G425400 chr7D 91.690 722 60 0 6206 6927 397174621 397173900 0.000000e+00 1002.0
41 TraesCS2A01G425400 chr7D 91.794 719 56 2 6209 6927 60328531 60329246 0.000000e+00 998.0
42 TraesCS2A01G425400 chr7D 91.655 719 58 2 6209 6927 139305878 139305162 0.000000e+00 994.0
43 TraesCS2A01G425400 chr7D 82.740 730 99 14 3786 4514 500350919 500351622 5.900000e-175 625.0
44 TraesCS2A01G425400 chr7D 82.430 461 66 7 3786 4245 112126383 112126829 8.430000e-104 388.0
45 TraesCS2A01G425400 chr3D 91.551 722 59 2 6206 6927 459899023 459899742 0.000000e+00 994.0
46 TraesCS2A01G425400 chr3D 79.793 386 70 7 100 481 449282184 449281803 2.460000e-69 274.0
47 TraesCS2A01G425400 chr6D 91.516 719 58 2 6209 6927 121825233 121824518 0.000000e+00 987.0
48 TraesCS2A01G425400 chr6D 89.423 104 10 1 5165 5267 158562614 158562511 5.640000e-26 130.0
49 TraesCS2A01G425400 chr7A 90.972 720 63 2 6209 6927 267558914 267559632 0.000000e+00 968.0
50 TraesCS2A01G425400 chr7A 77.561 410 87 5 45 453 631880174 631880579 6.940000e-60 243.0
51 TraesCS2A01G425400 chr7A 83.851 161 25 1 120 280 730422655 730422496 1.200000e-32 152.0
52 TraesCS2A01G425400 chr7A 79.433 141 29 0 475 615 17602848 17602988 4.420000e-17 100.0
53 TraesCS2A01G425400 chr5B 90.859 722 64 2 6206 6927 220808130 220807411 0.000000e+00 966.0
54 TraesCS2A01G425400 chr5B 91.000 100 9 0 5165 5264 378998875 378998974 1.210000e-27 135.0
55 TraesCS2A01G425400 chr5B 90.909 99 5 2 2497 2591 273458361 273458459 5.640000e-26 130.0
56 TraesCS2A01G425400 chr5D 91.086 718 55 6 6210 6927 394148853 394148145 0.000000e+00 963.0
57 TraesCS2A01G425400 chr5D 96.809 94 3 0 2498 2591 231789213 231789120 2.590000e-34 158.0
58 TraesCS2A01G425400 chr5D 72.953 403 80 16 32 432 536027405 536027780 5.680000e-21 113.0
59 TraesCS2A01G425400 chr4D 90.694 720 64 3 6209 6927 497924908 497925625 0.000000e+00 955.0
60 TraesCS2A01G425400 chr4D 75.748 602 112 21 36 616 127101360 127100772 8.850000e-69 272.0
61 TraesCS2A01G425400 chr4D 88.785 107 10 2 5165 5269 414999562 414999668 5.640000e-26 130.0
62 TraesCS2A01G425400 chr1A 86.467 569 62 10 3765 4331 572707905 572708460 1.650000e-170 610.0
63 TraesCS2A01G425400 chr5A 86.140 570 64 9 3765 4331 685743507 685742950 9.940000e-168 601.0
64 TraesCS2A01G425400 chr5A 90.526 95 9 0 2497 2591 325180452 325180546 7.290000e-25 126.0
65 TraesCS2A01G425400 chr1B 82.845 478 68 6 3791 4267 136532969 136532505 3.860000e-112 416.0
66 TraesCS2A01G425400 chrUn 82.430 461 66 7 3786 4245 111069079 111068633 8.430000e-104 388.0
67 TraesCS2A01G425400 chrUn 79.021 286 57 2 1796 2078 12444620 12444335 7.090000e-45 193.0
68 TraesCS2A01G425400 chrUn 91.753 97 8 0 5165 5261 15903921 15904017 1.210000e-27 135.0
69 TraesCS2A01G425400 chr7B 77.038 601 108 20 34 612 122854170 122853578 1.120000e-82 318.0
70 TraesCS2A01G425400 chr4A 80.471 425 74 9 34 454 616659986 616660405 4.030000e-82 316.0
71 TraesCS2A01G425400 chr4A 83.571 280 42 3 39 318 158192733 158193008 6.890000e-65 259.0
72 TraesCS2A01G425400 chr4A 75.472 318 66 9 33 345 446468491 446468181 2.010000e-30 145.0
73 TraesCS2A01G425400 chr4A 98.361 61 1 0 6010 6070 140364353 140364413 2.640000e-19 108.0
74 TraesCS2A01G425400 chr6B 79.585 289 55 4 4711 4997 20490695 20490981 3.280000e-48 204.0
75 TraesCS2A01G425400 chr6B 79.570 279 54 3 4720 4997 20497207 20497483 5.480000e-46 196.0
76 TraesCS2A01G425400 chr6B 79.570 279 54 3 4720 4997 20501322 20501598 5.480000e-46 196.0
77 TraesCS2A01G425400 chr6B 87.903 124 14 1 3605 3728 15268913 15268791 2.010000e-30 145.0
78 TraesCS2A01G425400 chr6A 90.083 121 10 2 3605 3724 142075021 142075140 9.300000e-34 156.0
79 TraesCS2A01G425400 chr3A 86.508 126 14 3 5144 5268 470095798 470095675 1.210000e-27 135.0
80 TraesCS2A01G425400 chr3A 89.320 103 11 0 5162 5264 12778905 12778803 5.640000e-26 130.0
81 TraesCS2A01G425400 chr3A 79.675 123 24 1 34 155 163618044 163617922 3.440000e-13 87.9
82 TraesCS2A01G425400 chr4B 88.679 106 11 1 5165 5269 511163709 511163814 2.030000e-25 128.0
83 TraesCS2A01G425400 chr4B 92.308 39 2 1 5048 5086 42932344 42932307 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G425400 chr2A 679261874 679268800 6926 True 12792.000000 12792 100.000000 1 6927 1 chr2A.!!$R4 6926
1 TraesCS2A01G425400 chr2A 682610957 682613131 2174 True 850.000000 850 74.288000 2835 4993 1 chr2A.!!$R5 2158
2 TraesCS2A01G425400 chr2A 678966641 678969694 3053 True 700.500000 1201 77.554000 2855 5911 2 chr2A.!!$R8 3056
3 TraesCS2A01G425400 chr2A 756952046 756953066 1020 True 531.000000 531 76.554000 3120 4166 1 chr2A.!!$R7 1046
4 TraesCS2A01G425400 chr2D 536504846 536511449 6603 True 2020.500000 4357 93.730250 711 6135 4 chr2D.!!$R7 5424
5 TraesCS2A01G425400 chr2D 536154835 536157741 2906 True 716.000000 1212 78.925500 2855 5911 2 chr2D.!!$R4 3056
6 TraesCS2A01G425400 chr2D 539309265 539310858 1593 True 702.000000 702 75.139000 2835 4419 1 chr2D.!!$R2 1584
7 TraesCS2A01G425400 chr2D 536224525 536226723 2198 True 613.000000 893 77.849500 2855 5009 2 chr2D.!!$R5 2154
8 TraesCS2A01G425400 chr2D 536382585 536386219 3634 True 254.666667 401 78.573333 1808 5016 3 chr2D.!!$R6 3208
9 TraesCS2A01G425400 chr2B 638754802 638760111 5309 True 1888.950000 4316 92.780000 711 6120 4 chr2B.!!$R11 5409
10 TraesCS2A01G425400 chr2B 637765675 637767813 2138 True 1190.000000 1190 77.238000 2855 5009 1 chr2B.!!$R6 2154
11 TraesCS2A01G425400 chr2B 638261858 638264793 2935 True 716.000000 1201 79.199000 2855 5911 2 chr2B.!!$R10 3056
12 TraesCS2A01G425400 chr2B 643201045 643202619 1574 True 627.000000 627 74.566000 2835 4398 1 chr2B.!!$R8 1563
13 TraesCS2A01G425400 chr2B 17173012 17173565 553 True 612.000000 612 86.596000 3765 4329 1 chr2B.!!$R1 564
14 TraesCS2A01G425400 chr2B 52627511 52628102 591 True 222.000000 222 74.124000 35 613 1 chr2B.!!$R4 578
15 TraesCS2A01G425400 chr7D 397173900 397174621 721 True 1002.000000 1002 91.690000 6206 6927 1 chr7D.!!$R2 721
16 TraesCS2A01G425400 chr7D 60328531 60329246 715 False 998.000000 998 91.794000 6209 6927 1 chr7D.!!$F1 718
17 TraesCS2A01G425400 chr7D 139305162 139305878 716 True 994.000000 994 91.655000 6209 6927 1 chr7D.!!$R1 718
18 TraesCS2A01G425400 chr7D 500350919 500351622 703 False 625.000000 625 82.740000 3786 4514 1 chr7D.!!$F3 728
19 TraesCS2A01G425400 chr3D 459899023 459899742 719 False 994.000000 994 91.551000 6206 6927 1 chr3D.!!$F1 721
20 TraesCS2A01G425400 chr6D 121824518 121825233 715 True 987.000000 987 91.516000 6209 6927 1 chr6D.!!$R1 718
21 TraesCS2A01G425400 chr7A 267558914 267559632 718 False 968.000000 968 90.972000 6209 6927 1 chr7A.!!$F2 718
22 TraesCS2A01G425400 chr5B 220807411 220808130 719 True 966.000000 966 90.859000 6206 6927 1 chr5B.!!$R1 721
23 TraesCS2A01G425400 chr5D 394148145 394148853 708 True 963.000000 963 91.086000 6210 6927 1 chr5D.!!$R2 717
24 TraesCS2A01G425400 chr4D 497924908 497925625 717 False 955.000000 955 90.694000 6209 6927 1 chr4D.!!$F2 718
25 TraesCS2A01G425400 chr4D 127100772 127101360 588 True 272.000000 272 75.748000 36 616 1 chr4D.!!$R1 580
26 TraesCS2A01G425400 chr1A 572707905 572708460 555 False 610.000000 610 86.467000 3765 4331 1 chr1A.!!$F1 566
27 TraesCS2A01G425400 chr5A 685742950 685743507 557 True 601.000000 601 86.140000 3765 4331 1 chr5A.!!$R1 566
28 TraesCS2A01G425400 chr7B 122853578 122854170 592 True 318.000000 318 77.038000 34 612 1 chr7B.!!$R1 578

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
287 301 0.108585 AGAGCAACAACCATCACCGT 59.891 50.0 0.00 0.0 0.00 4.83 F
577 611 0.173481 CGAGATTCTTCGCACCTCCA 59.827 55.0 0.00 0.0 33.39 3.86 F
2491 2598 0.116342 TGCCCTGGAGTAGAGTTGGA 59.884 55.0 0.00 0.0 0.00 3.53 F
2545 2652 0.029834 GGCCGCATGTGCTTGATTAG 59.970 55.0 0.00 0.0 39.32 1.73 F
2547 2654 0.029834 CCGCATGTGCTTGATTAGGC 59.970 55.0 0.00 0.0 39.32 3.93 F
2635 2742 0.183014 TAACCCTGCAAACCAACGGA 59.817 50.0 0.00 0.0 0.00 4.69 F
5044 5961 0.255890 TCCTGCAGACCCCTTAATGC 59.744 55.0 17.39 0.0 39.14 3.56 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1595 1682 0.167470 GAGTCACGACCGACGAATCA 59.833 55.000 0.00 0.0 45.77 2.57 R
2544 2651 0.251787 GTTCCCAAATCCACCAGCCT 60.252 55.000 0.00 0.0 0.00 4.58 R
3722 4332 1.914108 ACCTCTAAGTTTGGTAGGCCC 59.086 52.381 0.00 0.0 31.50 5.80 R
4461 5363 2.030007 GCAATGTGTAAGGCAGAAGCAA 60.030 45.455 0.00 0.0 44.61 3.91 R
5057 5977 0.179026 GCCGGGGTAATCCTCCTTTC 60.179 60.000 2.18 0.0 35.33 2.62 R
5104 6025 5.066505 GGTCTGCGAAATCTTGAATAATGGT 59.933 40.000 0.00 0.0 0.00 3.55 R
6178 8661 0.106015 AATCCAATGGCTGTAGGGGC 60.106 55.000 0.00 0.0 0.00 5.80 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.972107 AAGTTAGCAAATGCACTTCAGAT 57.028 34.783 8.28 0.00 45.16 2.90
23 24 5.972107 AGTTAGCAAATGCACTTCAGATT 57.028 34.783 8.28 0.00 45.16 2.40
24 25 7.452880 AAGTTAGCAAATGCACTTCAGATTA 57.547 32.000 8.28 0.00 45.16 1.75
25 26 7.636150 AGTTAGCAAATGCACTTCAGATTAT 57.364 32.000 8.28 0.00 45.16 1.28
26 27 7.478322 AGTTAGCAAATGCACTTCAGATTATG 58.522 34.615 8.28 0.00 45.16 1.90
27 28 5.258456 AGCAAATGCACTTCAGATTATGG 57.742 39.130 8.28 0.00 45.16 2.74
28 29 3.800506 GCAAATGCACTTCAGATTATGGC 59.199 43.478 0.00 0.00 41.59 4.40
29 30 4.365723 CAAATGCACTTCAGATTATGGCC 58.634 43.478 0.00 0.00 0.00 5.36
30 31 1.667236 TGCACTTCAGATTATGGCCG 58.333 50.000 0.00 0.00 0.00 6.13
31 32 1.065491 TGCACTTCAGATTATGGCCGT 60.065 47.619 1.35 1.35 0.00 5.68
32 33 1.599542 GCACTTCAGATTATGGCCGTC 59.400 52.381 0.00 0.00 0.00 4.79
33 34 2.743183 GCACTTCAGATTATGGCCGTCT 60.743 50.000 0.00 0.00 0.00 4.18
37 38 4.636206 ACTTCAGATTATGGCCGTCTTTTC 59.364 41.667 0.00 0.00 0.00 2.29
42 43 5.801947 CAGATTATGGCCGTCTTTTCTTTTG 59.198 40.000 0.00 0.00 0.00 2.44
129 131 2.832129 ACAATCATGTCCGTAGACCACT 59.168 45.455 0.00 0.00 42.81 4.00
136 138 3.084039 TGTCCGTAGACCACTTAACGAT 58.916 45.455 0.00 0.00 42.81 3.73
158 160 0.244994 CTACAAGCACTGGAGCGAGT 59.755 55.000 0.00 0.00 40.15 4.18
161 163 3.288308 AAGCACTGGAGCGAGTCGG 62.288 63.158 15.52 0.00 40.15 4.79
167 169 3.532155 GGAGCGAGTCGGAGGCAT 61.532 66.667 15.52 0.00 0.00 4.40
205 207 2.108566 CTCATCAGAGCCGGGCAG 59.891 66.667 23.09 10.77 34.61 4.85
211 213 2.038975 AGAGCCGGGCAGACCTTA 59.961 61.111 23.09 0.00 36.97 2.69
214 216 0.756903 GAGCCGGGCAGACCTTATTA 59.243 55.000 23.09 0.00 36.97 0.98
222 224 5.657302 CCGGGCAGACCTTATTATAGTAGAT 59.343 44.000 0.00 0.00 36.97 1.98
242 244 0.872388 AATCCGAAAGTTGTCGTGCC 59.128 50.000 6.68 0.00 39.43 5.01
245 247 0.591170 CCGAAAGTTGTCGTGCCAAT 59.409 50.000 6.68 0.00 39.43 3.16
256 270 0.762418 CGTGCCAATACCCCCATAGA 59.238 55.000 0.00 0.00 0.00 1.98
272 286 2.507110 TAGAACCAGCGCACCAGAGC 62.507 60.000 11.47 0.00 41.26 4.09
274 288 3.772853 AACCAGCGCACCAGAGCAA 62.773 57.895 11.47 0.00 43.61 3.91
287 301 0.108585 AGAGCAACAACCATCACCGT 59.891 50.000 0.00 0.00 0.00 4.83
292 306 2.480416 GCAACAACCATCACCGTTGAAA 60.480 45.455 7.63 0.00 42.63 2.69
330 344 6.263168 CAGAAGAATCAAACCCTGTAAACACT 59.737 38.462 0.00 0.00 0.00 3.55
334 348 6.777580 AGAATCAAACCCTGTAAACACTCAAT 59.222 34.615 0.00 0.00 0.00 2.57
335 349 6.976934 ATCAAACCCTGTAAACACTCAATT 57.023 33.333 0.00 0.00 0.00 2.32
369 383 4.034285 AGACCGAATCCAAACAAATCCT 57.966 40.909 0.00 0.00 0.00 3.24
377 391 4.301072 TCCAAACAAATCCTCCGAAGAT 57.699 40.909 0.00 0.00 0.00 2.40
381 395 4.559862 AACAAATCCTCCGAAGATCAGT 57.440 40.909 0.00 0.00 0.00 3.41
395 409 1.955080 GATCAGTACCGACCGAATCCT 59.045 52.381 0.00 0.00 0.00 3.24
398 412 0.968901 AGTACCGACCGAATCCTGCA 60.969 55.000 0.00 0.00 0.00 4.41
402 416 1.084370 CCGACCGAATCCTGCAAGAC 61.084 60.000 0.00 0.00 34.07 3.01
411 425 2.342279 CTGCAAGACCCGACGGAA 59.658 61.111 17.49 0.00 34.07 4.30
427 441 0.463116 GGAAACACACCTCCACACGT 60.463 55.000 0.00 0.00 0.00 4.49
434 448 3.760035 CCTCCACACGTCCTCCGG 61.760 72.222 0.00 0.00 42.24 5.14
440 454 0.245539 CACACGTCCTCCGGTAATGT 59.754 55.000 0.00 0.00 42.24 2.71
446 460 3.006752 ACGTCCTCCGGTAATGTTAAACA 59.993 43.478 0.00 0.00 42.24 2.83
457 471 5.105917 GGTAATGTTAAACACACCATCAGGG 60.106 44.000 0.00 0.00 38.61 4.45
459 473 1.199097 GTTAAACACACCATCAGGGCG 59.801 52.381 0.00 0.00 42.05 6.13
464 479 0.812811 CACACCATCAGGGCGAGATG 60.813 60.000 9.93 9.93 42.05 2.90
465 480 0.977627 ACACCATCAGGGCGAGATGA 60.978 55.000 16.43 1.76 44.34 2.92
485 519 4.671377 TGAAATATGAAAGACATTGCCGC 58.329 39.130 0.00 0.00 40.07 6.53
486 520 4.398988 TGAAATATGAAAGACATTGCCGCT 59.601 37.500 0.00 0.00 40.07 5.52
488 522 1.538047 ATGAAAGACATTGCCGCTGT 58.462 45.000 0.00 0.00 35.45 4.40
491 525 1.470098 GAAAGACATTGCCGCTGTCAT 59.530 47.619 13.52 1.02 44.37 3.06
493 527 1.656652 AGACATTGCCGCTGTCATAC 58.343 50.000 13.52 0.00 44.37 2.39
495 529 1.942657 GACATTGCCGCTGTCATACAT 59.057 47.619 7.67 0.00 42.08 2.29
498 532 0.541392 TTGCCGCTGTCATACATCCT 59.459 50.000 0.00 0.00 0.00 3.24
511 545 4.532126 TCATACATCCTCAACCAAGACAGT 59.468 41.667 0.00 0.00 0.00 3.55
526 560 7.227156 ACCAAGACAGTGAATCTAACAAGAAT 58.773 34.615 0.00 0.00 0.00 2.40
527 561 7.389053 ACCAAGACAGTGAATCTAACAAGAATC 59.611 37.037 0.00 0.00 0.00 2.52
529 563 8.777413 CAAGACAGTGAATCTAACAAGAATCAA 58.223 33.333 0.00 0.00 30.56 2.57
534 568 8.282592 CAGTGAATCTAACAAGAATCAAAACGA 58.717 33.333 0.00 0.00 30.56 3.85
535 569 8.499162 AGTGAATCTAACAAGAATCAAAACGAG 58.501 33.333 0.00 0.00 30.56 4.18
536 570 8.495949 GTGAATCTAACAAGAATCAAAACGAGA 58.504 33.333 0.00 0.00 30.56 4.04
537 571 9.219603 TGAATCTAACAAGAATCAAAACGAGAT 57.780 29.630 0.00 0.00 0.00 2.75
538 572 9.695884 GAATCTAACAAGAATCAAAACGAGATC 57.304 33.333 0.00 0.00 0.00 2.75
539 573 7.596749 TCTAACAAGAATCAAAACGAGATCC 57.403 36.000 0.00 0.00 0.00 3.36
540 574 5.629079 AACAAGAATCAAAACGAGATCCC 57.371 39.130 0.00 0.00 0.00 3.85
541 575 4.651778 ACAAGAATCAAAACGAGATCCCA 58.348 39.130 0.00 0.00 0.00 4.37
542 576 5.256474 ACAAGAATCAAAACGAGATCCCAT 58.744 37.500 0.00 0.00 0.00 4.00
543 577 5.711976 ACAAGAATCAAAACGAGATCCCATT 59.288 36.000 0.00 0.00 0.00 3.16
544 578 6.127897 ACAAGAATCAAAACGAGATCCCATTC 60.128 38.462 0.00 0.00 0.00 2.67
545 579 4.572389 AGAATCAAAACGAGATCCCATTCG 59.428 41.667 0.00 0.94 42.26 3.34
549 583 3.760693 ACGAGATCCCATTCGTTGG 57.239 52.632 2.18 0.82 46.87 3.77
550 584 0.902531 ACGAGATCCCATTCGTTGGT 59.097 50.000 2.18 0.00 46.87 3.67
551 585 1.290203 CGAGATCCCATTCGTTGGTG 58.710 55.000 6.44 0.00 44.83 4.17
552 586 1.668419 GAGATCCCATTCGTTGGTGG 58.332 55.000 6.44 0.00 44.83 4.61
569 603 2.109181 GGGGGCCGAGATTCTTCG 59.891 66.667 0.00 0.00 40.18 3.79
570 604 2.589159 GGGGCCGAGATTCTTCGC 60.589 66.667 0.00 0.00 39.19 4.70
571 605 2.186903 GGGCCGAGATTCTTCGCA 59.813 61.111 0.00 0.00 39.19 5.10
572 606 2.174319 GGGCCGAGATTCTTCGCAC 61.174 63.158 0.00 1.41 39.19 5.34
573 607 2.174319 GGCCGAGATTCTTCGCACC 61.174 63.158 7.85 4.94 39.19 5.01
574 608 1.153549 GCCGAGATTCTTCGCACCT 60.154 57.895 0.00 0.00 39.19 4.00
575 609 1.148759 GCCGAGATTCTTCGCACCTC 61.149 60.000 0.00 0.00 39.19 3.85
576 610 0.528684 CCGAGATTCTTCGCACCTCC 60.529 60.000 0.00 0.00 39.19 4.30
577 611 0.173481 CGAGATTCTTCGCACCTCCA 59.827 55.000 0.00 0.00 33.39 3.86
578 612 1.202463 CGAGATTCTTCGCACCTCCAT 60.202 52.381 0.00 0.00 33.39 3.41
579 613 2.208431 GAGATTCTTCGCACCTCCATG 58.792 52.381 0.00 0.00 0.00 3.66
580 614 1.134280 AGATTCTTCGCACCTCCATGG 60.134 52.381 4.97 4.97 42.93 3.66
589 623 2.914289 CCTCCATGGTCCAGAGGC 59.086 66.667 12.58 0.00 40.75 4.70
590 624 2.750657 CCTCCATGGTCCAGAGGCC 61.751 68.421 12.58 0.00 40.75 5.19
591 625 1.997311 CTCCATGGTCCAGAGGCCA 60.997 63.158 12.58 0.00 39.33 5.36
592 626 1.308128 TCCATGGTCCAGAGGCCAT 60.308 57.895 12.58 0.00 45.55 4.40
593 627 1.150081 CCATGGTCCAGAGGCCATC 59.850 63.158 5.01 0.00 43.05 3.51
594 628 1.227764 CATGGTCCAGAGGCCATCG 60.228 63.158 5.01 0.00 43.05 3.84
595 629 2.446848 ATGGTCCAGAGGCCATCGG 61.447 63.158 5.01 0.82 41.24 4.18
596 630 2.764128 GGTCCAGAGGCCATCGGA 60.764 66.667 5.01 3.84 0.00 4.55
597 631 2.801631 GGTCCAGAGGCCATCGGAG 61.802 68.421 5.01 0.00 33.27 4.63
598 632 1.758514 GTCCAGAGGCCATCGGAGA 60.759 63.158 5.01 0.00 45.75 3.71
599 633 1.118356 GTCCAGAGGCCATCGGAGAT 61.118 60.000 5.01 0.00 45.12 2.75
600 634 0.482887 TCCAGAGGCCATCGGAGATA 59.517 55.000 5.01 0.00 45.12 1.98
601 635 0.894141 CCAGAGGCCATCGGAGATAG 59.106 60.000 5.01 0.00 45.12 2.08
602 636 0.894141 CAGAGGCCATCGGAGATAGG 59.106 60.000 5.01 0.00 45.12 2.57
603 637 0.780637 AGAGGCCATCGGAGATAGGA 59.219 55.000 5.01 0.00 45.12 2.94
604 638 0.892063 GAGGCCATCGGAGATAGGAC 59.108 60.000 5.01 0.00 45.12 3.85
605 639 0.896019 AGGCCATCGGAGATAGGACG 60.896 60.000 5.01 0.00 45.12 4.79
606 640 1.587054 GCCATCGGAGATAGGACGG 59.413 63.158 0.00 0.00 45.12 4.79
607 641 0.894184 GCCATCGGAGATAGGACGGA 60.894 60.000 0.00 0.00 45.12 4.69
608 642 0.882474 CCATCGGAGATAGGACGGAC 59.118 60.000 0.00 0.00 45.12 4.79
609 643 0.882474 CATCGGAGATAGGACGGACC 59.118 60.000 0.00 0.00 45.12 4.46
610 644 0.605860 ATCGGAGATAGGACGGACCG 60.606 60.000 13.61 13.61 45.12 4.79
611 645 2.259439 CGGAGATAGGACGGACCGG 61.259 68.421 20.00 0.00 44.74 5.28
612 646 2.562876 GGAGATAGGACGGACCGGC 61.563 68.421 20.00 16.70 44.74 6.13
613 647 2.905807 GAGATAGGACGGACCGGCG 61.906 68.421 20.00 0.00 44.74 6.46
614 648 3.974757 GATAGGACGGACCGGCGG 61.975 72.222 27.06 27.06 44.74 6.13
615 649 4.828296 ATAGGACGGACCGGCGGT 62.828 66.667 34.81 34.81 44.74 5.68
625 659 4.973055 CCGGCGGTGGTCGTCAAA 62.973 66.667 19.97 0.00 44.96 2.69
626 660 3.411351 CGGCGGTGGTCGTCAAAG 61.411 66.667 0.00 0.00 44.96 2.77
627 661 2.280592 GGCGGTGGTCGTCAAAGT 60.281 61.111 0.00 0.00 43.98 2.66
628 662 1.890510 GGCGGTGGTCGTCAAAGTT 60.891 57.895 0.00 0.00 43.98 2.66
629 663 1.278637 GCGGTGGTCGTCAAAGTTG 59.721 57.895 0.00 0.00 41.72 3.16
630 664 1.278637 CGGTGGTCGTCAAAGTTGC 59.721 57.895 0.00 0.00 0.00 4.17
631 665 1.157870 CGGTGGTCGTCAAAGTTGCT 61.158 55.000 0.00 0.00 0.00 3.91
632 666 1.021968 GGTGGTCGTCAAAGTTGCTT 58.978 50.000 0.00 0.00 0.00 3.91
633 667 1.268539 GGTGGTCGTCAAAGTTGCTTG 60.269 52.381 0.00 0.00 0.00 4.01
634 668 0.380378 TGGTCGTCAAAGTTGCTTGC 59.620 50.000 0.00 0.00 0.00 4.01
635 669 0.380378 GGTCGTCAAAGTTGCTTGCA 59.620 50.000 0.00 0.00 0.00 4.08
636 670 1.001378 GGTCGTCAAAGTTGCTTGCAT 60.001 47.619 0.00 0.00 0.00 3.96
637 671 2.543653 GGTCGTCAAAGTTGCTTGCATT 60.544 45.455 0.00 0.00 0.00 3.56
638 672 3.115554 GTCGTCAAAGTTGCTTGCATTT 58.884 40.909 0.00 0.00 0.00 2.32
639 673 3.180387 GTCGTCAAAGTTGCTTGCATTTC 59.820 43.478 0.00 0.00 0.00 2.17
640 674 3.114809 CGTCAAAGTTGCTTGCATTTCA 58.885 40.909 0.00 0.00 0.00 2.69
641 675 3.180980 CGTCAAAGTTGCTTGCATTTCAG 59.819 43.478 0.00 0.00 0.00 3.02
642 676 3.492011 GTCAAAGTTGCTTGCATTTCAGG 59.508 43.478 0.00 0.00 0.00 3.86
643 677 3.132646 TCAAAGTTGCTTGCATTTCAGGT 59.867 39.130 0.00 0.00 0.00 4.00
644 678 3.825143 AAGTTGCTTGCATTTCAGGTT 57.175 38.095 0.00 0.00 0.00 3.50
645 679 4.935352 AAGTTGCTTGCATTTCAGGTTA 57.065 36.364 0.00 0.00 0.00 2.85
646 680 4.935352 AGTTGCTTGCATTTCAGGTTAA 57.065 36.364 0.00 0.00 0.00 2.01
647 681 4.620982 AGTTGCTTGCATTTCAGGTTAAC 58.379 39.130 0.00 0.00 0.00 2.01
648 682 4.342092 AGTTGCTTGCATTTCAGGTTAACT 59.658 37.500 5.42 0.00 31.70 2.24
649 683 4.935352 TGCTTGCATTTCAGGTTAACTT 57.065 36.364 5.42 0.00 0.00 2.66
650 684 5.275067 TGCTTGCATTTCAGGTTAACTTT 57.725 34.783 5.42 0.00 0.00 2.66
651 685 6.398234 TGCTTGCATTTCAGGTTAACTTTA 57.602 33.333 5.42 0.00 0.00 1.85
652 686 6.446318 TGCTTGCATTTCAGGTTAACTTTAG 58.554 36.000 5.42 0.00 0.00 1.85
653 687 6.040391 TGCTTGCATTTCAGGTTAACTTTAGT 59.960 34.615 5.42 0.00 0.00 2.24
654 688 6.923508 GCTTGCATTTCAGGTTAACTTTAGTT 59.076 34.615 5.42 0.29 41.73 2.24
655 689 7.438160 GCTTGCATTTCAGGTTAACTTTAGTTT 59.562 33.333 5.42 0.00 39.31 2.66
656 690 9.313118 CTTGCATTTCAGGTTAACTTTAGTTTT 57.687 29.630 5.42 0.00 39.31 2.43
657 691 8.641499 TGCATTTCAGGTTAACTTTAGTTTTG 57.359 30.769 5.42 0.00 39.31 2.44
658 692 8.470805 TGCATTTCAGGTTAACTTTAGTTTTGA 58.529 29.630 5.42 0.00 39.31 2.69
659 693 9.308318 GCATTTCAGGTTAACTTTAGTTTTGAA 57.692 29.630 5.42 4.56 39.31 2.69
676 710 8.631480 AGTTTTGAAAGTAATATTCCCTTCGT 57.369 30.769 0.00 0.00 0.00 3.85
677 711 9.729281 AGTTTTGAAAGTAATATTCCCTTCGTA 57.271 29.630 0.00 0.00 0.00 3.43
681 715 9.947433 TTGAAAGTAATATTCCCTTCGTAAAGA 57.053 29.630 0.00 0.00 34.14 2.52
682 716 9.947433 TGAAAGTAATATTCCCTTCGTAAAGAA 57.053 29.630 0.00 0.00 34.14 2.52
689 723 9.901172 AATATTCCCTTCGTAAAGAAATACTGT 57.099 29.630 0.00 0.00 38.57 3.55
883 919 0.599204 TTTCCGTTCGCAGTGTCCTC 60.599 55.000 0.00 0.00 0.00 3.71
913 949 1.727467 GCCGCTCTCACTCTCTCTC 59.273 63.158 0.00 0.00 0.00 3.20
915 951 1.351707 CGCTCTCACTCTCTCTCGC 59.648 63.158 0.00 0.00 0.00 5.03
1120 1157 1.952133 TTTCGCTCCAACCGTCGTG 60.952 57.895 0.00 0.00 0.00 4.35
1263 1300 0.669625 GGACTCCGTGCTGTGGTAAC 60.670 60.000 0.00 0.00 0.00 2.50
1276 1313 4.030913 CTGTGGTAACTCCCCAGATCTTA 58.969 47.826 0.00 0.00 34.77 2.10
1339 1397 4.657075 TTTTCTTACGCGAGGAAATCAC 57.343 40.909 15.93 0.00 30.22 3.06
1397 1463 2.297701 TGTTTGGAGTTCAGGTTCAGC 58.702 47.619 0.00 0.00 0.00 4.26
1398 1464 1.609072 GTTTGGAGTTCAGGTTCAGCC 59.391 52.381 0.00 0.00 37.58 4.85
1495 1568 0.870393 ACGACACTGCTGCTGAATTG 59.130 50.000 13.69 4.00 0.00 2.32
1500 1573 4.493708 CGACACTGCTGCTGAATTGAATAG 60.494 45.833 13.69 0.00 0.00 1.73
1519 1592 7.108194 TGAATAGATCTGACAATTGTCTTGCT 58.892 34.615 32.57 25.20 44.99 3.91
1522 1595 5.798132 AGATCTGACAATTGTCTTGCTGTA 58.202 37.500 32.57 14.51 44.99 2.74
1524 1597 4.318332 TCTGACAATTGTCTTGCTGTAGG 58.682 43.478 32.57 14.67 44.99 3.18
1595 1682 6.378280 GGCATGATCCGGATCCTAATTTAATT 59.622 38.462 35.72 3.27 37.02 1.40
1601 1688 7.667043 TCCGGATCCTAATTTAATTGATTCG 57.333 36.000 10.75 10.10 34.88 3.34
1603 1690 7.386848 TCCGGATCCTAATTTAATTGATTCGTC 59.613 37.037 10.75 1.78 33.60 4.20
1631 1721 4.217118 GTGACTCACATGGCATCTCTTTTT 59.783 41.667 0.00 0.00 34.08 1.94
1632 1722 4.456911 TGACTCACATGGCATCTCTTTTTC 59.543 41.667 0.00 0.00 0.00 2.29
1634 1724 5.809001 ACTCACATGGCATCTCTTTTTCTA 58.191 37.500 0.00 0.00 0.00 2.10
1718 1811 2.987149 GACGTCACTGATGGTTACTGTG 59.013 50.000 11.55 0.00 38.12 3.66
1721 1814 3.428870 CGTCACTGATGGTTACTGTGTTC 59.571 47.826 0.00 0.00 38.02 3.18
1977 2076 3.203716 GGATCTTGGGATAACAACGACC 58.796 50.000 0.00 0.00 31.46 4.79
2033 2132 1.336148 ACATTGGCATGTGTTCTTGCG 60.336 47.619 0.00 0.00 42.46 4.85
2077 2176 4.442192 CCAAGAGCACATAAGGAGAGGTAC 60.442 50.000 0.00 0.00 0.00 3.34
2127 2226 3.730215 CCGACACATGTGAATGTTGTTTG 59.270 43.478 31.94 10.56 31.37 2.93
2169 2268 0.239879 CAAACGCCTTAACGCCATGT 59.760 50.000 0.00 0.00 36.19 3.21
2241 2340 0.401738 TTGCTGCTCCTACAGGCTTT 59.598 50.000 0.00 0.00 38.16 3.51
2275 2374 0.463654 TGGTATGCTTAGCCTTGCCG 60.464 55.000 0.29 0.00 0.00 5.69
2331 2430 9.731819 CAAACTGATATTGATTGGATTCTTCAG 57.268 33.333 0.00 0.00 35.40 3.02
2476 2583 2.057137 TGGAAATGCACTATCTGCCC 57.943 50.000 0.00 0.00 46.51 5.36
2479 2586 1.952296 GAAATGCACTATCTGCCCTGG 59.048 52.381 0.00 0.00 46.51 4.45
2480 2587 1.216064 AATGCACTATCTGCCCTGGA 58.784 50.000 0.00 0.00 46.51 3.86
2481 2588 0.763652 ATGCACTATCTGCCCTGGAG 59.236 55.000 0.00 0.00 46.51 3.86
2482 2589 0.618680 TGCACTATCTGCCCTGGAGT 60.619 55.000 0.00 0.00 46.51 3.85
2483 2590 1.342975 TGCACTATCTGCCCTGGAGTA 60.343 52.381 0.00 0.00 46.51 2.59
2484 2591 1.342819 GCACTATCTGCCCTGGAGTAG 59.657 57.143 0.00 0.00 40.42 2.57
2486 2593 2.890311 CACTATCTGCCCTGGAGTAGAG 59.110 54.545 0.00 0.00 0.00 2.43
2490 2597 0.539051 CTGCCCTGGAGTAGAGTTGG 59.461 60.000 0.00 0.00 0.00 3.77
2491 2598 0.116342 TGCCCTGGAGTAGAGTTGGA 59.884 55.000 0.00 0.00 0.00 3.53
2492 2599 0.827368 GCCCTGGAGTAGAGTTGGAG 59.173 60.000 0.00 0.00 0.00 3.86
2494 2601 2.623502 GCCCTGGAGTAGAGTTGGAGTA 60.624 54.545 0.00 0.00 0.00 2.59
2495 2602 3.025262 CCCTGGAGTAGAGTTGGAGTAC 58.975 54.545 0.00 0.00 0.00 2.73
2496 2603 3.025262 CCTGGAGTAGAGTTGGAGTACC 58.975 54.545 0.00 0.00 0.00 3.34
2497 2604 2.683867 CTGGAGTAGAGTTGGAGTACCG 59.316 54.545 0.00 0.00 39.42 4.02
2499 2606 3.053842 TGGAGTAGAGTTGGAGTACCGAT 60.054 47.826 0.00 0.00 39.42 4.18
2500 2607 3.315749 GGAGTAGAGTTGGAGTACCGATG 59.684 52.174 0.00 0.00 39.42 3.84
2501 2608 4.197750 GAGTAGAGTTGGAGTACCGATGA 58.802 47.826 0.00 0.00 39.42 2.92
2503 2610 5.014858 AGTAGAGTTGGAGTACCGATGAAA 58.985 41.667 0.00 0.00 39.42 2.69
2504 2611 4.457834 AGAGTTGGAGTACCGATGAAAG 57.542 45.455 0.00 0.00 39.42 2.62
2505 2612 3.833070 AGAGTTGGAGTACCGATGAAAGT 59.167 43.478 0.00 0.00 39.42 2.66
2506 2613 3.926616 AGTTGGAGTACCGATGAAAGTG 58.073 45.455 0.00 0.00 39.42 3.16
2507 2614 2.380084 TGGAGTACCGATGAAAGTGC 57.620 50.000 0.00 0.00 39.42 4.40
2508 2615 1.066430 TGGAGTACCGATGAAAGTGCC 60.066 52.381 0.00 0.00 39.42 5.01
2509 2616 1.207329 GGAGTACCGATGAAAGTGCCT 59.793 52.381 0.00 0.00 0.00 4.75
2510 2617 2.541556 GAGTACCGATGAAAGTGCCTC 58.458 52.381 0.00 0.00 0.00 4.70
2511 2618 1.207329 AGTACCGATGAAAGTGCCTCC 59.793 52.381 0.00 0.00 0.00 4.30
2512 2619 0.539986 TACCGATGAAAGTGCCTCCC 59.460 55.000 0.00 0.00 0.00 4.30
2513 2620 1.815421 CCGATGAAAGTGCCTCCCG 60.815 63.158 0.00 0.00 0.00 5.14
2514 2621 2.464459 CGATGAAAGTGCCTCCCGC 61.464 63.158 0.00 0.00 38.31 6.13
2515 2622 1.078143 GATGAAAGTGCCTCCCGCT 60.078 57.895 0.00 0.00 38.78 5.52
2516 2623 1.372087 GATGAAAGTGCCTCCCGCTG 61.372 60.000 0.00 0.00 38.78 5.18
2517 2624 3.435186 GAAAGTGCCTCCCGCTGC 61.435 66.667 0.00 0.00 38.78 5.25
2542 2649 3.511595 CGGCCGCATGTGCTTGAT 61.512 61.111 14.67 0.00 39.32 2.57
2543 2650 2.887360 GGCCGCATGTGCTTGATT 59.113 55.556 0.00 0.00 39.32 2.57
2544 2651 1.713937 CGGCCGCATGTGCTTGATTA 61.714 55.000 14.67 0.00 39.32 1.75
2545 2652 0.029834 GGCCGCATGTGCTTGATTAG 59.970 55.000 0.00 0.00 39.32 1.73
2546 2653 0.029834 GCCGCATGTGCTTGATTAGG 59.970 55.000 0.00 0.00 39.32 2.69
2547 2654 0.029834 CCGCATGTGCTTGATTAGGC 59.970 55.000 0.00 0.00 39.32 3.93
2548 2655 1.019673 CGCATGTGCTTGATTAGGCT 58.980 50.000 3.25 0.00 39.32 4.58
2549 2656 1.268386 CGCATGTGCTTGATTAGGCTG 60.268 52.381 0.00 0.00 39.32 4.85
2550 2657 1.066605 GCATGTGCTTGATTAGGCTGG 59.933 52.381 0.00 0.00 38.21 4.85
2551 2658 2.372264 CATGTGCTTGATTAGGCTGGT 58.628 47.619 0.00 0.00 0.00 4.00
2552 2659 1.825090 TGTGCTTGATTAGGCTGGTG 58.175 50.000 0.00 0.00 0.00 4.17
2553 2660 1.098050 GTGCTTGATTAGGCTGGTGG 58.902 55.000 0.00 0.00 0.00 4.61
2554 2661 0.991146 TGCTTGATTAGGCTGGTGGA 59.009 50.000 0.00 0.00 0.00 4.02
2555 2662 1.565759 TGCTTGATTAGGCTGGTGGAT 59.434 47.619 0.00 0.00 0.00 3.41
2556 2663 2.025037 TGCTTGATTAGGCTGGTGGATT 60.025 45.455 0.00 0.00 0.00 3.01
2557 2664 3.026694 GCTTGATTAGGCTGGTGGATTT 58.973 45.455 0.00 0.00 0.00 2.17
2558 2665 3.181483 GCTTGATTAGGCTGGTGGATTTG 60.181 47.826 0.00 0.00 0.00 2.32
2559 2666 3.017048 TGATTAGGCTGGTGGATTTGG 57.983 47.619 0.00 0.00 0.00 3.28
2560 2667 2.310538 GATTAGGCTGGTGGATTTGGG 58.689 52.381 0.00 0.00 0.00 4.12
2561 2668 1.377690 TTAGGCTGGTGGATTTGGGA 58.622 50.000 0.00 0.00 0.00 4.37
2562 2669 1.377690 TAGGCTGGTGGATTTGGGAA 58.622 50.000 0.00 0.00 0.00 3.97
2563 2670 0.251787 AGGCTGGTGGATTTGGGAAC 60.252 55.000 0.00 0.00 0.00 3.62
2585 2692 9.020731 GGAACCTAGATTAAAGATTGGAAAACA 57.979 33.333 0.00 0.00 0.00 2.83
2588 2695 9.362151 ACCTAGATTAAAGATTGGAAAACAACA 57.638 29.630 0.00 0.00 42.94 3.33
2589 2696 9.626045 CCTAGATTAAAGATTGGAAAACAACAC 57.374 33.333 0.00 0.00 42.94 3.32
2592 2699 9.750125 AGATTAAAGATTGGAAAACAACACTTC 57.250 29.630 0.00 0.00 42.94 3.01
2593 2700 9.750125 GATTAAAGATTGGAAAACAACACTTCT 57.250 29.630 0.00 0.00 42.94 2.85
2595 2702 9.936759 TTAAAGATTGGAAAACAACACTTCTTT 57.063 25.926 9.78 9.78 42.65 2.52
2597 2704 9.586435 AAAGATTGGAAAACAACACTTCTTTAG 57.414 29.630 0.00 0.00 40.33 1.85
2598 2705 7.203218 AGATTGGAAAACAACACTTCTTTAGC 58.797 34.615 0.00 0.00 42.94 3.09
2599 2706 6.524101 TTGGAAAACAACACTTCTTTAGCT 57.476 33.333 0.00 0.00 33.18 3.32
2600 2707 5.890334 TGGAAAACAACACTTCTTTAGCTG 58.110 37.500 0.00 0.00 0.00 4.24
2601 2708 5.163561 TGGAAAACAACACTTCTTTAGCTGG 60.164 40.000 0.00 0.00 0.00 4.85
2602 2709 5.067283 GGAAAACAACACTTCTTTAGCTGGA 59.933 40.000 0.00 0.00 0.00 3.86
2603 2710 5.757850 AAACAACACTTCTTTAGCTGGAG 57.242 39.130 0.00 0.00 0.00 3.86
2604 2711 4.689612 ACAACACTTCTTTAGCTGGAGA 57.310 40.909 0.00 0.00 0.00 3.71
2605 2712 5.036117 ACAACACTTCTTTAGCTGGAGAA 57.964 39.130 11.60 11.60 0.00 2.87
2606 2713 5.437060 ACAACACTTCTTTAGCTGGAGAAA 58.563 37.500 12.75 0.00 31.99 2.52
2607 2714 5.885912 ACAACACTTCTTTAGCTGGAGAAAA 59.114 36.000 12.75 0.00 31.99 2.29
2608 2715 6.547510 ACAACACTTCTTTAGCTGGAGAAAAT 59.452 34.615 12.75 4.23 31.99 1.82
2609 2716 7.719633 ACAACACTTCTTTAGCTGGAGAAAATA 59.280 33.333 12.75 0.00 31.99 1.40
2610 2717 7.674471 ACACTTCTTTAGCTGGAGAAAATAC 57.326 36.000 12.75 0.00 31.99 1.89
2611 2718 7.454225 ACACTTCTTTAGCTGGAGAAAATACT 58.546 34.615 12.75 0.00 31.99 2.12
2612 2719 7.389053 ACACTTCTTTAGCTGGAGAAAATACTG 59.611 37.037 12.75 5.18 31.99 2.74
2613 2720 7.604164 CACTTCTTTAGCTGGAGAAAATACTGA 59.396 37.037 12.75 0.00 31.99 3.41
2614 2721 8.157476 ACTTCTTTAGCTGGAGAAAATACTGAA 58.843 33.333 12.75 0.00 31.99 3.02
2615 2722 7.907214 TCTTTAGCTGGAGAAAATACTGAAC 57.093 36.000 0.00 0.00 0.00 3.18
2616 2723 7.680730 TCTTTAGCTGGAGAAAATACTGAACT 58.319 34.615 0.00 0.00 0.00 3.01
2617 2724 8.812972 TCTTTAGCTGGAGAAAATACTGAACTA 58.187 33.333 0.00 0.00 0.00 2.24
2618 2725 9.436957 CTTTAGCTGGAGAAAATACTGAACTAA 57.563 33.333 0.00 0.00 0.00 2.24
2619 2726 8.773404 TTAGCTGGAGAAAATACTGAACTAAC 57.227 34.615 0.00 0.00 0.00 2.34
2620 2727 6.174049 AGCTGGAGAAAATACTGAACTAACC 58.826 40.000 0.00 0.00 0.00 2.85
2621 2728 5.354513 GCTGGAGAAAATACTGAACTAACCC 59.645 44.000 0.00 0.00 0.00 4.11
2622 2729 6.697641 TGGAGAAAATACTGAACTAACCCT 57.302 37.500 0.00 0.00 0.00 4.34
2623 2730 6.472887 TGGAGAAAATACTGAACTAACCCTG 58.527 40.000 0.00 0.00 0.00 4.45
2624 2731 5.354513 GGAGAAAATACTGAACTAACCCTGC 59.645 44.000 0.00 0.00 0.00 4.85
2625 2732 5.876357 AGAAAATACTGAACTAACCCTGCA 58.124 37.500 0.00 0.00 0.00 4.41
2626 2733 6.303839 AGAAAATACTGAACTAACCCTGCAA 58.696 36.000 0.00 0.00 0.00 4.08
2627 2734 6.775629 AGAAAATACTGAACTAACCCTGCAAA 59.224 34.615 0.00 0.00 0.00 3.68
2628 2735 5.959618 AATACTGAACTAACCCTGCAAAC 57.040 39.130 0.00 0.00 0.00 2.93
2629 2736 2.583143 ACTGAACTAACCCTGCAAACC 58.417 47.619 0.00 0.00 0.00 3.27
2630 2737 2.092103 ACTGAACTAACCCTGCAAACCA 60.092 45.455 0.00 0.00 0.00 3.67
2631 2738 2.955660 CTGAACTAACCCTGCAAACCAA 59.044 45.455 0.00 0.00 0.00 3.67
2632 2739 2.691011 TGAACTAACCCTGCAAACCAAC 59.309 45.455 0.00 0.00 0.00 3.77
2633 2740 1.314730 ACTAACCCTGCAAACCAACG 58.685 50.000 0.00 0.00 0.00 4.10
2634 2741 0.596082 CTAACCCTGCAAACCAACGG 59.404 55.000 0.00 0.00 0.00 4.44
2635 2742 0.183014 TAACCCTGCAAACCAACGGA 59.817 50.000 0.00 0.00 0.00 4.69
2636 2743 0.469144 AACCCTGCAAACCAACGGAT 60.469 50.000 0.00 0.00 0.00 4.18
2637 2744 1.178534 ACCCTGCAAACCAACGGATG 61.179 55.000 0.00 0.00 0.00 3.51
2651 2758 4.920376 CAACGGATGGATTTGATTGGTAC 58.080 43.478 0.00 0.00 0.00 3.34
2652 2759 4.503714 ACGGATGGATTTGATTGGTACT 57.496 40.909 0.00 0.00 0.00 2.73
2653 2760 4.451900 ACGGATGGATTTGATTGGTACTC 58.548 43.478 0.00 0.00 0.00 2.59
2654 2761 3.815401 CGGATGGATTTGATTGGTACTCC 59.185 47.826 0.00 0.00 0.00 3.85
2655 2762 4.685848 CGGATGGATTTGATTGGTACTCCA 60.686 45.833 0.00 0.00 42.66 3.86
2666 2773 3.820195 TGGTACTCCAACTCTACTCCA 57.180 47.619 0.00 0.00 41.25 3.86
2667 2774 3.698289 TGGTACTCCAACTCTACTCCAG 58.302 50.000 0.00 0.00 41.25 3.86
2668 2775 3.025262 GGTACTCCAACTCTACTCCAGG 58.975 54.545 0.00 0.00 0.00 4.45
2669 2776 2.239681 ACTCCAACTCTACTCCAGGG 57.760 55.000 0.00 0.00 0.00 4.45
2670 2777 1.717077 ACTCCAACTCTACTCCAGGGA 59.283 52.381 0.00 0.00 0.00 4.20
2671 2778 2.291930 ACTCCAACTCTACTCCAGGGAG 60.292 54.545 13.74 13.74 46.91 4.30
3018 3133 7.096023 GCGTTAGTCCACAACTATGATGATAAG 60.096 40.741 0.00 0.00 40.18 1.73
3180 3300 6.545504 GTGTATCCACTAAATATGCACTGG 57.454 41.667 0.00 0.00 38.61 4.00
3639 4249 4.576463 ACAAGGCTTCAAAAGTCAGTGTAG 59.424 41.667 0.00 0.00 33.56 2.74
3722 4332 1.673665 GTGCTCTGAAGGGGTGCAG 60.674 63.158 0.00 0.00 34.58 4.41
3760 4373 2.232941 AGGTGCCTGCATGAAATTTGAG 59.767 45.455 0.00 0.00 0.00 3.02
3845 4482 3.056678 TCGAGTATGCCGTTAAGTTTCCA 60.057 43.478 0.00 0.00 0.00 3.53
4066 4721 2.204237 CTTTTGGCTTTGGCTGTTGAC 58.796 47.619 0.00 0.00 38.73 3.18
4449 5109 4.825546 AACTTGATGTCTTTGTCTGCTG 57.174 40.909 0.00 0.00 0.00 4.41
4457 5359 4.377021 TGTCTTTGTCTGCTGTTTCGTAT 58.623 39.130 0.00 0.00 0.00 3.06
4461 5363 6.090898 GTCTTTGTCTGCTGTTTCGTATGTAT 59.909 38.462 0.00 0.00 0.00 2.29
4750 5667 1.504912 ATCCATCTGCAGTGGCTACT 58.495 50.000 22.98 0.00 41.91 2.57
5044 5961 0.255890 TCCTGCAGACCCCTTAATGC 59.744 55.000 17.39 0.00 39.14 3.56
5104 6025 5.044772 TGCATAGACCCCTTTATGTTACCAA 60.045 40.000 0.00 0.00 31.45 3.67
5174 6095 8.429641 AGTGTTTCTTTAATGTTACTCTCTCCA 58.570 33.333 0.00 0.00 0.00 3.86
5249 6170 5.796350 AAACTGCGACACTTATTATGGAC 57.204 39.130 0.00 0.00 0.00 4.02
5256 6177 4.381411 GACACTTATTATGGACCAGAGGC 58.619 47.826 0.00 0.00 0.00 4.70
5262 6183 7.016914 ACTTATTATGGACCAGAGGCAGTATA 58.983 38.462 0.00 0.00 0.00 1.47
5313 6475 0.893270 TGGTGGACTTGCAATTCCCG 60.893 55.000 27.53 7.19 0.00 5.14
5606 6940 5.738909 CATTAGGATGACTCTGACCTGTTT 58.261 41.667 0.00 0.00 35.16 2.83
5998 7387 4.292178 GGAGCAGAGGGATCGGCG 62.292 72.222 0.00 0.00 35.99 6.46
6010 7399 1.644786 GATCGGCGGTGAACCTTTGG 61.645 60.000 7.21 0.00 0.00 3.28
6061 8543 3.335579 ACGAAGGTAGGCTCAATGTTTC 58.664 45.455 0.00 0.00 0.00 2.78
6062 8544 3.244422 ACGAAGGTAGGCTCAATGTTTCA 60.244 43.478 0.00 0.00 0.00 2.69
6063 8545 3.751175 CGAAGGTAGGCTCAATGTTTCAA 59.249 43.478 0.00 0.00 0.00 2.69
6127 8610 5.009010 AGTTTCATCAGAAAAACACATCGCT 59.991 36.000 12.11 0.00 44.75 4.93
6128 8611 4.408993 TCATCAGAAAAACACATCGCTG 57.591 40.909 0.00 0.00 0.00 5.18
6129 8612 3.814842 TCATCAGAAAAACACATCGCTGT 59.185 39.130 0.00 0.00 35.44 4.40
6130 8613 3.878086 TCAGAAAAACACATCGCTGTC 57.122 42.857 0.00 0.00 31.62 3.51
6132 8615 2.549754 CAGAAAAACACATCGCTGTCCT 59.450 45.455 0.00 0.00 31.62 3.85
6133 8616 3.745975 CAGAAAAACACATCGCTGTCCTA 59.254 43.478 0.00 0.00 31.62 2.94
6134 8617 4.393062 CAGAAAAACACATCGCTGTCCTAT 59.607 41.667 0.00 0.00 31.62 2.57
6135 8618 4.393062 AGAAAAACACATCGCTGTCCTATG 59.607 41.667 0.00 0.00 31.62 2.23
6136 8619 3.334583 AAACACATCGCTGTCCTATGT 57.665 42.857 0.00 0.00 34.22 2.29
6137 8620 4.465632 AAACACATCGCTGTCCTATGTA 57.534 40.909 0.00 0.00 32.70 2.29
6138 8621 4.672587 AACACATCGCTGTCCTATGTAT 57.327 40.909 0.00 0.00 32.70 2.29
6139 8622 5.784578 AACACATCGCTGTCCTATGTATA 57.215 39.130 0.00 0.00 32.70 1.47
6140 8623 5.984695 ACACATCGCTGTCCTATGTATAT 57.015 39.130 0.00 0.00 32.70 0.86
6141 8624 7.462571 AACACATCGCTGTCCTATGTATATA 57.537 36.000 0.00 0.00 32.70 0.86
6142 8625 7.646548 ACACATCGCTGTCCTATGTATATAT 57.353 36.000 0.00 0.00 32.70 0.86
6143 8626 8.747538 ACACATCGCTGTCCTATGTATATATA 57.252 34.615 0.00 0.00 32.70 0.86
6144 8627 9.355916 ACACATCGCTGTCCTATGTATATATAT 57.644 33.333 0.00 0.00 32.70 0.86
6165 8648 3.278157 AAAAAGGGCGCTGCTAGC 58.722 55.556 8.10 8.10 38.02 3.42
6173 8656 4.271816 CGCTGCTAGCCGTCCGAT 62.272 66.667 13.29 0.00 38.18 4.18
6174 8657 2.355244 GCTGCTAGCCGTCCGATC 60.355 66.667 13.29 0.00 34.48 3.69
6175 8658 2.851071 GCTGCTAGCCGTCCGATCT 61.851 63.158 13.29 0.00 34.48 2.75
6176 8659 1.516365 GCTGCTAGCCGTCCGATCTA 61.516 60.000 13.29 0.00 34.48 1.98
6177 8660 0.519519 CTGCTAGCCGTCCGATCTAG 59.480 60.000 13.29 9.85 34.45 2.43
6178 8661 0.889638 TGCTAGCCGTCCGATCTAGG 60.890 60.000 13.29 0.00 32.54 3.02
6181 8664 3.992317 GCCGTCCGATCTAGGCCC 61.992 72.222 0.00 0.00 43.54 5.80
6182 8665 3.303928 CCGTCCGATCTAGGCCCC 61.304 72.222 0.00 0.00 0.00 5.80
6183 8666 2.203509 CGTCCGATCTAGGCCCCT 60.204 66.667 0.00 0.00 0.00 4.79
6184 8667 1.074423 CGTCCGATCTAGGCCCCTA 59.926 63.158 0.00 0.00 0.00 3.53
6185 8668 1.242665 CGTCCGATCTAGGCCCCTAC 61.243 65.000 0.00 0.00 0.00 3.18
6186 8669 0.178970 GTCCGATCTAGGCCCCTACA 60.179 60.000 0.00 0.00 0.00 2.74
6187 8670 0.112606 TCCGATCTAGGCCCCTACAG 59.887 60.000 0.00 0.00 0.00 2.74
6188 8671 1.536943 CCGATCTAGGCCCCTACAGC 61.537 65.000 0.00 0.00 0.00 4.40
6195 8678 3.006677 GCCCCTACAGCCATTGGA 58.993 61.111 6.95 0.00 0.00 3.53
6196 8679 1.538666 GCCCCTACAGCCATTGGAT 59.461 57.895 6.95 0.00 0.00 3.41
6197 8680 0.106015 GCCCCTACAGCCATTGGATT 60.106 55.000 6.95 0.00 0.00 3.01
6198 8681 1.696063 CCCCTACAGCCATTGGATTG 58.304 55.000 6.95 6.49 0.00 2.67
6199 8682 1.063717 CCCCTACAGCCATTGGATTGT 60.064 52.381 6.95 12.11 0.00 2.71
6200 8683 2.624029 CCCCTACAGCCATTGGATTGTT 60.624 50.000 15.63 0.00 0.00 2.83
6201 8684 3.099141 CCCTACAGCCATTGGATTGTTT 58.901 45.455 15.63 0.00 0.00 2.83
6202 8685 3.131046 CCCTACAGCCATTGGATTGTTTC 59.869 47.826 15.63 0.00 0.00 2.78
6203 8686 3.763360 CCTACAGCCATTGGATTGTTTCA 59.237 43.478 15.63 1.70 0.00 2.69
6204 8687 4.220382 CCTACAGCCATTGGATTGTTTCAA 59.780 41.667 15.63 1.42 0.00 2.69
6224 8707 2.803155 CTTAGGCCAACTCCAGCGCA 62.803 60.000 11.47 0.00 0.00 6.09
6269 8753 2.841266 TCCGTTTGGGATAGAATGGACA 59.159 45.455 0.00 0.00 40.94 4.02
6310 8794 2.360801 CGACCCCAAACAGACAAATGTT 59.639 45.455 0.00 0.00 45.18 2.71
6463 8948 1.966451 CCTTCGCTTCCAACGCCTT 60.966 57.895 0.00 0.00 0.00 4.35
6478 8963 2.124996 CTTCACCCCCTCTCCCCA 59.875 66.667 0.00 0.00 0.00 4.96
6529 9014 3.699894 CGGCTGCCTCCTCACTGT 61.700 66.667 17.92 0.00 0.00 3.55
6533 9018 1.298993 CTGCCTCCTCACTGTGCAT 59.701 57.895 2.12 0.00 0.00 3.96
6537 9025 1.153489 CTCCTCACTGTGCATCCCG 60.153 63.158 2.12 0.00 0.00 5.14
6564 9052 3.618752 CGTCCATACCAAACCACATCTCA 60.619 47.826 0.00 0.00 0.00 3.27
6665 9153 1.043673 GTGGCAGAGGGGATACGACT 61.044 60.000 0.00 0.00 37.60 4.18
6726 9214 2.496817 CTCCAGAGCGGCCAGTAC 59.503 66.667 2.24 0.00 33.14 2.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.972107 ATCTGAAGTGCATTTGCTAACTT 57.028 34.783 0.00 7.70 39.16 2.66
1 2 5.972107 AATCTGAAGTGCATTTGCTAACT 57.028 34.783 0.00 0.00 42.66 2.24
2 3 6.694411 CCATAATCTGAAGTGCATTTGCTAAC 59.306 38.462 0.00 0.00 42.66 2.34
5 6 4.441079 GCCATAATCTGAAGTGCATTTGCT 60.441 41.667 0.00 0.00 42.66 3.91
6 7 3.800506 GCCATAATCTGAAGTGCATTTGC 59.199 43.478 0.00 0.00 42.50 3.68
7 8 4.365723 GGCCATAATCTGAAGTGCATTTG 58.634 43.478 0.00 0.00 0.00 2.32
8 9 3.067180 CGGCCATAATCTGAAGTGCATTT 59.933 43.478 2.24 0.00 0.00 2.32
9 10 2.620115 CGGCCATAATCTGAAGTGCATT 59.380 45.455 2.24 0.00 0.00 3.56
10 11 2.224606 CGGCCATAATCTGAAGTGCAT 58.775 47.619 2.24 0.00 0.00 3.96
11 12 1.065491 ACGGCCATAATCTGAAGTGCA 60.065 47.619 2.24 0.00 0.00 4.57
12 13 1.599542 GACGGCCATAATCTGAAGTGC 59.400 52.381 2.24 0.00 0.00 4.40
13 14 3.185246 AGACGGCCATAATCTGAAGTG 57.815 47.619 2.24 0.00 0.00 3.16
14 15 3.914426 AAGACGGCCATAATCTGAAGT 57.086 42.857 2.24 0.00 0.00 3.01
15 16 4.878397 AGAAAAGACGGCCATAATCTGAAG 59.122 41.667 2.24 0.00 0.00 3.02
16 17 4.843728 AGAAAAGACGGCCATAATCTGAA 58.156 39.130 2.24 0.00 0.00 3.02
17 18 4.487714 AGAAAAGACGGCCATAATCTGA 57.512 40.909 2.24 0.00 0.00 3.27
18 19 5.567138 AAAGAAAAGACGGCCATAATCTG 57.433 39.130 2.24 0.00 0.00 2.90
19 20 5.105756 CCAAAAGAAAAGACGGCCATAATCT 60.106 40.000 2.24 0.00 0.00 2.40
20 21 5.102313 CCAAAAGAAAAGACGGCCATAATC 58.898 41.667 2.24 0.00 0.00 1.75
21 22 4.770010 TCCAAAAGAAAAGACGGCCATAAT 59.230 37.500 2.24 0.00 0.00 1.28
22 23 4.145807 TCCAAAAGAAAAGACGGCCATAA 58.854 39.130 2.24 0.00 0.00 1.90
23 24 3.756434 CTCCAAAAGAAAAGACGGCCATA 59.244 43.478 2.24 0.00 0.00 2.74
24 25 2.558359 CTCCAAAAGAAAAGACGGCCAT 59.442 45.455 2.24 0.00 0.00 4.40
25 26 1.953686 CTCCAAAAGAAAAGACGGCCA 59.046 47.619 2.24 0.00 0.00 5.36
26 27 2.227194 TCTCCAAAAGAAAAGACGGCC 58.773 47.619 0.00 0.00 0.00 6.13
27 28 3.982576 TTCTCCAAAAGAAAAGACGGC 57.017 42.857 0.00 0.00 41.10 5.68
122 124 5.710984 CTTGTAGTCATCGTTAAGTGGTCT 58.289 41.667 0.00 0.00 0.00 3.85
129 131 4.021807 TCCAGTGCTTGTAGTCATCGTTAA 60.022 41.667 0.00 0.00 0.00 2.01
136 138 0.038251 CGCTCCAGTGCTTGTAGTCA 60.038 55.000 0.00 0.00 0.00 3.41
182 184 1.456518 CGGCTCTGATGAGGGAGGA 60.457 63.158 0.00 0.00 40.53 3.71
214 216 7.861372 CACGACAACTTTCGGATTATCTACTAT 59.139 37.037 0.00 0.00 43.58 2.12
222 224 2.070783 GGCACGACAACTTTCGGATTA 58.929 47.619 0.00 0.00 43.58 1.75
227 229 2.412325 GGTATTGGCACGACAACTTTCG 60.412 50.000 0.00 0.00 44.87 3.46
242 244 2.810400 CGCTGGTTCTATGGGGGTATTG 60.810 54.545 0.00 0.00 0.00 1.90
245 247 1.692173 GCGCTGGTTCTATGGGGGTA 61.692 60.000 0.00 0.00 0.00 3.69
256 270 3.772853 TTGCTCTGGTGCGCTGGTT 62.773 57.895 9.73 0.00 35.36 3.67
272 286 3.428746 TTTCAACGGTGATGGTTGTTG 57.571 42.857 2.76 0.00 43.93 3.33
296 310 7.937942 CAGGGTTTGATTCTTCTGATCTATGAT 59.062 37.037 0.00 0.00 0.00 2.45
311 325 6.976934 ATTGAGTGTTTACAGGGTTTGATT 57.023 33.333 0.00 0.00 0.00 2.57
315 329 8.410912 GTCTTTAATTGAGTGTTTACAGGGTTT 58.589 33.333 0.00 0.00 0.00 3.27
318 332 6.425721 TCGTCTTTAATTGAGTGTTTACAGGG 59.574 38.462 0.00 0.00 0.00 4.45
330 344 4.383649 CGGTCTTCGTTCGTCTTTAATTGA 59.616 41.667 0.00 0.00 0.00 2.57
334 348 3.624326 TCGGTCTTCGTTCGTCTTTAA 57.376 42.857 0.00 0.00 40.32 1.52
335 349 3.624326 TTCGGTCTTCGTTCGTCTTTA 57.376 42.857 0.00 0.00 40.32 1.85
369 383 1.386533 GGTCGGTACTGATCTTCGGA 58.613 55.000 7.85 0.00 0.00 4.55
377 391 1.100510 CAGGATTCGGTCGGTACTGA 58.899 55.000 0.00 0.00 39.30 3.41
381 395 0.174845 CTTGCAGGATTCGGTCGGTA 59.825 55.000 0.00 0.00 0.00 4.02
395 409 1.595929 GTTTCCGTCGGGTCTTGCA 60.596 57.895 12.29 0.00 33.83 4.08
398 412 0.531311 GTGTGTTTCCGTCGGGTCTT 60.531 55.000 12.29 0.00 33.83 3.01
402 416 1.666872 GAGGTGTGTTTCCGTCGGG 60.667 63.158 12.29 0.00 0.00 5.14
411 425 1.145377 GGACGTGTGGAGGTGTGTT 59.855 57.895 0.00 0.00 0.00 3.32
427 441 4.620589 TGTGTTTAACATTACCGGAGGA 57.379 40.909 9.46 0.00 42.93 3.71
434 448 5.621329 GCCCTGATGGTGTGTTTAACATTAC 60.621 44.000 0.00 4.15 41.97 1.89
440 454 1.072489 TCGCCCTGATGGTGTGTTTAA 59.928 47.619 0.00 0.00 45.41 1.52
446 460 0.977627 TCATCTCGCCCTGATGGTGT 60.978 55.000 0.00 0.00 45.41 4.16
457 471 6.359087 GCAATGTCTTTCATATTTCATCTCGC 59.641 38.462 0.00 0.00 35.48 5.03
459 473 6.854892 CGGCAATGTCTTTCATATTTCATCTC 59.145 38.462 0.00 0.00 35.48 2.75
464 479 4.736793 CAGCGGCAATGTCTTTCATATTTC 59.263 41.667 1.45 0.00 35.48 2.17
465 480 4.158394 ACAGCGGCAATGTCTTTCATATTT 59.842 37.500 1.45 0.00 35.48 1.40
485 519 4.872691 GTCTTGGTTGAGGATGTATGACAG 59.127 45.833 0.00 0.00 0.00 3.51
486 520 4.285775 TGTCTTGGTTGAGGATGTATGACA 59.714 41.667 0.00 0.00 0.00 3.58
488 522 4.532126 ACTGTCTTGGTTGAGGATGTATGA 59.468 41.667 0.00 0.00 0.00 2.15
491 525 3.901222 TCACTGTCTTGGTTGAGGATGTA 59.099 43.478 0.00 0.00 0.00 2.29
493 527 3.407424 TCACTGTCTTGGTTGAGGATG 57.593 47.619 0.00 0.00 0.00 3.51
495 529 3.648067 AGATTCACTGTCTTGGTTGAGGA 59.352 43.478 0.00 0.00 0.00 3.71
498 532 5.924356 TGTTAGATTCACTGTCTTGGTTGA 58.076 37.500 0.00 0.00 0.00 3.18
511 545 8.601845 TCTCGTTTTGATTCTTGTTAGATTCA 57.398 30.769 0.00 0.00 38.40 2.57
526 560 3.328382 ACGAATGGGATCTCGTTTTGA 57.672 42.857 0.51 0.00 45.58 2.69
552 586 2.109181 CGAAGAATCTCGGCCCCC 59.891 66.667 0.00 0.00 35.14 5.40
553 587 2.589159 GCGAAGAATCTCGGCCCC 60.589 66.667 0.00 0.00 39.27 5.80
554 588 2.174319 GTGCGAAGAATCTCGGCCC 61.174 63.158 0.00 0.00 39.27 5.80
555 589 2.174319 GGTGCGAAGAATCTCGGCC 61.174 63.158 0.00 0.00 39.27 6.13
556 590 1.148759 GAGGTGCGAAGAATCTCGGC 61.149 60.000 0.00 2.28 39.27 5.54
557 591 0.528684 GGAGGTGCGAAGAATCTCGG 60.529 60.000 0.00 0.00 39.27 4.63
558 592 0.173481 TGGAGGTGCGAAGAATCTCG 59.827 55.000 0.00 0.00 41.84 4.04
559 593 2.208431 CATGGAGGTGCGAAGAATCTC 58.792 52.381 0.00 0.00 0.00 2.75
560 594 1.134280 CCATGGAGGTGCGAAGAATCT 60.134 52.381 5.56 0.00 0.00 2.40
561 595 1.303309 CCATGGAGGTGCGAAGAATC 58.697 55.000 5.56 0.00 0.00 2.52
562 596 3.483954 CCATGGAGGTGCGAAGAAT 57.516 52.632 5.56 0.00 0.00 2.40
572 606 2.750657 GGCCTCTGGACCATGGAGG 61.751 68.421 21.47 20.73 46.65 4.30
573 607 1.351080 ATGGCCTCTGGACCATGGAG 61.351 60.000 21.47 5.55 45.03 3.86
574 608 1.308128 ATGGCCTCTGGACCATGGA 60.308 57.895 21.47 0.00 45.03 3.41
575 609 1.150081 GATGGCCTCTGGACCATGG 59.850 63.158 11.19 11.19 46.72 3.66
576 610 1.227764 CGATGGCCTCTGGACCATG 60.228 63.158 3.32 0.00 46.72 3.66
578 612 3.083349 CCGATGGCCTCTGGACCA 61.083 66.667 3.32 0.00 41.06 4.02
579 613 2.764128 TCCGATGGCCTCTGGACC 60.764 66.667 3.32 0.00 0.00 4.46
580 614 1.118356 ATCTCCGATGGCCTCTGGAC 61.118 60.000 3.32 0.00 0.00 4.02
581 615 0.482887 TATCTCCGATGGCCTCTGGA 59.517 55.000 3.32 7.30 0.00 3.86
582 616 0.894141 CTATCTCCGATGGCCTCTGG 59.106 60.000 3.32 2.36 0.00 3.86
583 617 0.894141 CCTATCTCCGATGGCCTCTG 59.106 60.000 3.32 0.00 0.00 3.35
584 618 0.780637 TCCTATCTCCGATGGCCTCT 59.219 55.000 3.32 0.00 0.00 3.69
585 619 0.892063 GTCCTATCTCCGATGGCCTC 59.108 60.000 3.32 0.00 0.00 4.70
586 620 0.896019 CGTCCTATCTCCGATGGCCT 60.896 60.000 3.32 0.00 0.00 5.19
587 621 1.587054 CGTCCTATCTCCGATGGCC 59.413 63.158 0.00 0.00 0.00 5.36
588 622 0.894184 TCCGTCCTATCTCCGATGGC 60.894 60.000 0.00 0.00 35.48 4.40
589 623 0.882474 GTCCGTCCTATCTCCGATGG 59.118 60.000 0.00 0.00 36.63 3.51
590 624 0.882474 GGTCCGTCCTATCTCCGATG 59.118 60.000 0.00 0.00 0.00 3.84
591 625 0.605860 CGGTCCGTCCTATCTCCGAT 60.606 60.000 2.08 0.00 40.29 4.18
592 626 1.227764 CGGTCCGTCCTATCTCCGA 60.228 63.158 2.08 0.00 40.29 4.55
593 627 2.259439 CCGGTCCGTCCTATCTCCG 61.259 68.421 11.06 0.00 38.05 4.63
594 628 2.562876 GCCGGTCCGTCCTATCTCC 61.563 68.421 11.06 0.00 0.00 3.71
595 629 2.905807 CGCCGGTCCGTCCTATCTC 61.906 68.421 11.06 0.00 0.00 2.75
596 630 2.905880 CGCCGGTCCGTCCTATCT 60.906 66.667 11.06 0.00 0.00 1.98
597 631 3.974757 CCGCCGGTCCGTCCTATC 61.975 72.222 11.06 0.00 0.00 2.08
598 632 4.828296 ACCGCCGGTCCGTCCTAT 62.828 66.667 1.02 0.00 0.00 2.57
608 642 4.973055 TTTGACGACCACCGCCGG 62.973 66.667 0.00 0.00 43.32 6.13
609 643 3.411351 CTTTGACGACCACCGCCG 61.411 66.667 0.00 0.00 43.32 6.46
610 644 1.890510 AACTTTGACGACCACCGCC 60.891 57.895 0.00 0.00 43.32 6.13
611 645 1.278637 CAACTTTGACGACCACCGC 59.721 57.895 0.00 0.00 43.32 5.68
612 646 1.157870 AGCAACTTTGACGACCACCG 61.158 55.000 0.00 0.00 45.44 4.94
613 647 1.021968 AAGCAACTTTGACGACCACC 58.978 50.000 0.00 0.00 0.00 4.61
614 648 1.859998 GCAAGCAACTTTGACGACCAC 60.860 52.381 0.00 0.00 0.00 4.16
615 649 0.380378 GCAAGCAACTTTGACGACCA 59.620 50.000 0.00 0.00 0.00 4.02
616 650 0.380378 TGCAAGCAACTTTGACGACC 59.620 50.000 0.00 0.00 0.00 4.79
617 651 2.405892 ATGCAAGCAACTTTGACGAC 57.594 45.000 0.00 0.00 0.00 4.34
618 652 3.181492 TGAAATGCAAGCAACTTTGACGA 60.181 39.130 0.00 0.00 0.00 4.20
619 653 3.114809 TGAAATGCAAGCAACTTTGACG 58.885 40.909 0.00 0.00 0.00 4.35
620 654 3.492011 CCTGAAATGCAAGCAACTTTGAC 59.508 43.478 0.00 0.00 0.00 3.18
621 655 3.132646 ACCTGAAATGCAAGCAACTTTGA 59.867 39.130 0.00 0.00 0.00 2.69
622 656 3.460103 ACCTGAAATGCAAGCAACTTTG 58.540 40.909 0.00 0.00 0.00 2.77
623 657 3.825143 ACCTGAAATGCAAGCAACTTT 57.175 38.095 0.00 0.00 0.00 2.66
624 658 3.825143 AACCTGAAATGCAAGCAACTT 57.175 38.095 0.00 0.00 0.00 2.66
625 659 4.342092 AGTTAACCTGAAATGCAAGCAACT 59.658 37.500 0.88 0.00 0.00 3.16
626 660 4.620982 AGTTAACCTGAAATGCAAGCAAC 58.379 39.130 0.88 0.00 0.00 4.17
627 661 4.935352 AGTTAACCTGAAATGCAAGCAA 57.065 36.364 0.88 0.00 0.00 3.91
628 662 4.935352 AAGTTAACCTGAAATGCAAGCA 57.065 36.364 0.88 0.00 0.00 3.91
629 663 6.447162 ACTAAAGTTAACCTGAAATGCAAGC 58.553 36.000 0.88 0.00 0.00 4.01
630 664 8.871686 AAACTAAAGTTAACCTGAAATGCAAG 57.128 30.769 0.88 0.00 37.25 4.01
631 665 9.092876 CAAAACTAAAGTTAACCTGAAATGCAA 57.907 29.630 0.88 0.00 37.25 4.08
632 666 8.470805 TCAAAACTAAAGTTAACCTGAAATGCA 58.529 29.630 0.88 0.00 37.25 3.96
633 667 8.865590 TCAAAACTAAAGTTAACCTGAAATGC 57.134 30.769 0.88 0.00 37.25 3.56
650 684 9.729281 ACGAAGGGAATATTACTTTCAAAACTA 57.271 29.630 19.39 0.00 0.00 2.24
651 685 8.631480 ACGAAGGGAATATTACTTTCAAAACT 57.369 30.769 19.39 0.00 0.00 2.66
655 689 9.947433 TCTTTACGAAGGGAATATTACTTTCAA 57.053 29.630 19.39 7.13 33.56 2.69
656 690 9.947433 TTCTTTACGAAGGGAATATTACTTTCA 57.053 29.630 19.39 1.75 33.56 2.69
663 697 9.901172 ACAGTATTTCTTTACGAAGGGAATATT 57.099 29.630 0.00 0.00 33.56 1.28
690 724 9.778741 TGTTTGAAGTGATCTAAACAGTCTTAT 57.221 29.630 0.00 0.00 35.77 1.73
691 725 9.607988 TTGTTTGAAGTGATCTAAACAGTCTTA 57.392 29.630 0.00 0.00 38.76 2.10
692 726 8.506168 TTGTTTGAAGTGATCTAAACAGTCTT 57.494 30.769 0.00 0.00 38.76 3.01
693 727 8.682936 ATTGTTTGAAGTGATCTAAACAGTCT 57.317 30.769 0.00 0.00 38.76 3.24
694 728 9.736023 AAATTGTTTGAAGTGATCTAAACAGTC 57.264 29.630 0.00 0.00 38.76 3.51
728 762 1.300481 GCTTCCCGCAGATAAGTTCC 58.700 55.000 0.00 0.00 38.92 3.62
729 763 0.931005 CGCTTCCCGCAGATAAGTTC 59.069 55.000 0.00 0.00 39.08 3.01
732 766 1.595382 CCCGCTTCCCGCAGATAAG 60.595 63.158 0.00 0.00 39.08 1.73
816 851 2.531428 TGGGATGTGGGACCAGCA 60.531 61.111 0.00 0.00 0.00 4.41
913 949 1.776034 GCCGGAATAGGAAAGCAGCG 61.776 60.000 5.05 0.00 0.00 5.18
915 951 0.179084 TCGCCGGAATAGGAAAGCAG 60.179 55.000 5.05 0.00 0.00 4.24
1120 1157 2.126031 GGCGGGAGTGAGTCGAAC 60.126 66.667 0.00 0.00 0.00 3.95
1145 1182 0.602638 AATCCTTGAAGCGTGCACGA 60.603 50.000 41.19 19.13 43.02 4.35
1148 1185 0.960364 GGGAATCCTTGAAGCGTGCA 60.960 55.000 0.00 0.00 0.00 4.57
1276 1313 3.474570 GGAGCGATCCAGCCAGGT 61.475 66.667 16.44 0.00 39.02 4.00
1322 1359 3.927142 AGAAAGTGATTTCCTCGCGTAAG 59.073 43.478 5.77 0.00 39.46 2.34
1339 1397 5.240891 TGCTGGAATTACTCACAGAGAAAG 58.759 41.667 0.31 0.00 33.32 2.62
1376 1434 2.887152 GCTGAACCTGAACTCCAAACAT 59.113 45.455 0.00 0.00 0.00 2.71
1397 1463 3.437741 GGTAAAACACATACAGGGTTCGG 59.562 47.826 0.00 0.00 44.99 4.30
1398 1464 4.320870 AGGTAAAACACATACAGGGTTCG 58.679 43.478 0.00 0.00 44.99 3.95
1405 1471 8.623030 GGTTGTTTCTTAGGTAAAACACATACA 58.377 33.333 0.49 0.00 43.11 2.29
1500 1573 8.316956 GCCTACAGCAAGACAATTGTCAGATC 62.317 46.154 33.92 21.23 43.89 2.75
1519 1592 1.207089 ACTAGCAATCGCAAGCCTACA 59.793 47.619 0.00 0.00 42.27 2.74
1522 1595 1.482593 AGTACTAGCAATCGCAAGCCT 59.517 47.619 0.00 0.00 42.27 4.58
1524 1597 2.930040 TCAAGTACTAGCAATCGCAAGC 59.070 45.455 0.00 0.00 42.27 4.01
1555 1628 1.404391 CATGCCGGAGTAAGACGTACT 59.596 52.381 5.05 0.26 46.23 2.73
1556 1629 1.402968 TCATGCCGGAGTAAGACGTAC 59.597 52.381 5.05 0.00 0.00 3.67
1558 1631 1.067212 GATCATGCCGGAGTAAGACGT 59.933 52.381 5.05 0.00 0.00 4.34
1560 1633 2.156343 GGATCATGCCGGAGTAAGAC 57.844 55.000 5.05 0.00 0.00 3.01
1595 1682 0.167470 GAGTCACGACCGACGAATCA 59.833 55.000 0.00 0.00 45.77 2.57
1601 1688 0.732880 CCATGTGAGTCACGACCGAC 60.733 60.000 18.17 0.00 37.14 4.79
1603 1690 2.094659 GCCATGTGAGTCACGACCG 61.095 63.158 18.17 6.90 37.14 4.79
1631 1721 6.263168 TCTTCTCGACATATGCTGTTCATAGA 59.737 38.462 1.58 0.00 40.69 1.98
1632 1722 6.442112 TCTTCTCGACATATGCTGTTCATAG 58.558 40.000 1.58 0.00 40.69 2.23
1634 1724 5.268118 TCTTCTCGACATATGCTGTTCAT 57.732 39.130 1.58 0.00 38.54 2.57
1977 2076 1.542915 CTTGTTGGCTGATGACCCAAG 59.457 52.381 0.00 0.00 41.46 3.61
2033 2132 3.429960 GGCCAAGATTCCATTTCTCAAGC 60.430 47.826 0.00 0.00 0.00 4.01
2127 2226 2.860136 GCTCTTGAAAACAAACACAGGC 59.140 45.455 0.00 0.00 0.00 4.85
2169 2268 4.746535 TCCGATAAAATGTAGTCCTGCA 57.253 40.909 0.00 0.00 0.00 4.41
2241 2340 7.716799 AAGCATACCAGGAAAAATCATGTTA 57.283 32.000 0.00 0.00 0.00 2.41
2275 2374 2.390306 AATTGCAAACCCGCCCCAAC 62.390 55.000 1.71 0.00 0.00 3.77
2320 2419 2.577563 TCTCCCATTGCTGAAGAATCCA 59.422 45.455 0.00 0.00 0.00 3.41
2331 2430 4.741321 TTTCAATTCCATCTCCCATTGC 57.259 40.909 0.00 0.00 0.00 3.56
2476 2583 2.683867 CGGTACTCCAACTCTACTCCAG 59.316 54.545 0.00 0.00 0.00 3.86
2479 2586 4.197750 TCATCGGTACTCCAACTCTACTC 58.802 47.826 0.00 0.00 0.00 2.59
2480 2587 4.232188 TCATCGGTACTCCAACTCTACT 57.768 45.455 0.00 0.00 0.00 2.57
2481 2588 4.978083 TTCATCGGTACTCCAACTCTAC 57.022 45.455 0.00 0.00 0.00 2.59
2482 2589 5.014858 ACTTTCATCGGTACTCCAACTCTA 58.985 41.667 0.00 0.00 0.00 2.43
2483 2590 3.833070 ACTTTCATCGGTACTCCAACTCT 59.167 43.478 0.00 0.00 0.00 3.24
2484 2591 3.927142 CACTTTCATCGGTACTCCAACTC 59.073 47.826 0.00 0.00 0.00 3.01
2486 2593 2.415512 GCACTTTCATCGGTACTCCAAC 59.584 50.000 0.00 0.00 0.00 3.77
2490 2597 2.541556 GAGGCACTTTCATCGGTACTC 58.458 52.381 0.00 0.00 41.55 2.59
2491 2598 1.207329 GGAGGCACTTTCATCGGTACT 59.793 52.381 0.00 0.00 41.55 2.73
2492 2599 1.653151 GGAGGCACTTTCATCGGTAC 58.347 55.000 0.00 0.00 41.55 3.34
2494 2601 1.299976 GGGAGGCACTTTCATCGGT 59.700 57.895 0.00 0.00 41.55 4.69
2495 2602 1.815421 CGGGAGGCACTTTCATCGG 60.815 63.158 0.00 0.00 41.55 4.18
2496 2603 2.464459 GCGGGAGGCACTTTCATCG 61.464 63.158 0.00 0.00 41.55 3.84
2497 2604 3.502572 GCGGGAGGCACTTTCATC 58.497 61.111 0.00 0.00 41.55 2.92
2530 2637 1.066605 CCAGCCTAATCAAGCACATGC 59.933 52.381 0.00 0.00 42.49 4.06
2531 2638 2.098607 CACCAGCCTAATCAAGCACATG 59.901 50.000 0.00 0.00 0.00 3.21
2532 2639 2.372264 CACCAGCCTAATCAAGCACAT 58.628 47.619 0.00 0.00 0.00 3.21
2533 2640 1.614051 CCACCAGCCTAATCAAGCACA 60.614 52.381 0.00 0.00 0.00 4.57
2534 2641 1.098050 CCACCAGCCTAATCAAGCAC 58.902 55.000 0.00 0.00 0.00 4.40
2535 2642 0.991146 TCCACCAGCCTAATCAAGCA 59.009 50.000 0.00 0.00 0.00 3.91
2536 2643 2.355010 ATCCACCAGCCTAATCAAGC 57.645 50.000 0.00 0.00 0.00 4.01
2537 2644 3.382546 CCAAATCCACCAGCCTAATCAAG 59.617 47.826 0.00 0.00 0.00 3.02
2538 2645 3.364549 CCAAATCCACCAGCCTAATCAA 58.635 45.455 0.00 0.00 0.00 2.57
2539 2646 2.358090 CCCAAATCCACCAGCCTAATCA 60.358 50.000 0.00 0.00 0.00 2.57
2540 2647 2.091885 TCCCAAATCCACCAGCCTAATC 60.092 50.000 0.00 0.00 0.00 1.75
2541 2648 1.929494 TCCCAAATCCACCAGCCTAAT 59.071 47.619 0.00 0.00 0.00 1.73
2542 2649 1.377690 TCCCAAATCCACCAGCCTAA 58.622 50.000 0.00 0.00 0.00 2.69
2543 2650 1.005450 GTTCCCAAATCCACCAGCCTA 59.995 52.381 0.00 0.00 0.00 3.93
2544 2651 0.251787 GTTCCCAAATCCACCAGCCT 60.252 55.000 0.00 0.00 0.00 4.58
2545 2652 1.257750 GGTTCCCAAATCCACCAGCC 61.258 60.000 0.00 0.00 0.00 4.85
2546 2653 0.251787 AGGTTCCCAAATCCACCAGC 60.252 55.000 0.00 0.00 0.00 4.85
2547 2654 2.576191 TCTAGGTTCCCAAATCCACCAG 59.424 50.000 0.00 0.00 0.00 4.00
2548 2655 2.638325 TCTAGGTTCCCAAATCCACCA 58.362 47.619 0.00 0.00 0.00 4.17
2549 2656 3.953542 ATCTAGGTTCCCAAATCCACC 57.046 47.619 0.00 0.00 0.00 4.61
2550 2657 7.116736 TCTTTAATCTAGGTTCCCAAATCCAC 58.883 38.462 0.00 0.00 0.00 4.02
2551 2658 7.278724 TCTTTAATCTAGGTTCCCAAATCCA 57.721 36.000 0.00 0.00 0.00 3.41
2552 2659 8.633561 CAATCTTTAATCTAGGTTCCCAAATCC 58.366 37.037 0.00 0.00 0.00 3.01
2553 2660 8.633561 CCAATCTTTAATCTAGGTTCCCAAATC 58.366 37.037 0.00 0.00 0.00 2.17
2554 2661 8.343787 TCCAATCTTTAATCTAGGTTCCCAAAT 58.656 33.333 0.00 0.00 0.00 2.32
2555 2662 7.704727 TCCAATCTTTAATCTAGGTTCCCAAA 58.295 34.615 0.00 0.00 0.00 3.28
2556 2663 7.278724 TCCAATCTTTAATCTAGGTTCCCAA 57.721 36.000 0.00 0.00 0.00 4.12
2557 2664 6.901615 TCCAATCTTTAATCTAGGTTCCCA 57.098 37.500 0.00 0.00 0.00 4.37
2558 2665 8.467598 GTTTTCCAATCTTTAATCTAGGTTCCC 58.532 37.037 0.00 0.00 0.00 3.97
2559 2666 9.020731 TGTTTTCCAATCTTTAATCTAGGTTCC 57.979 33.333 0.00 0.00 0.00 3.62
2562 2669 9.362151 TGTTGTTTTCCAATCTTTAATCTAGGT 57.638 29.630 0.00 0.00 35.02 3.08
2563 2670 9.626045 GTGTTGTTTTCCAATCTTTAATCTAGG 57.374 33.333 0.00 0.00 35.02 3.02
2566 2673 9.750125 GAAGTGTTGTTTTCCAATCTTTAATCT 57.250 29.630 0.00 0.00 35.02 2.40
2567 2674 9.750125 AGAAGTGTTGTTTTCCAATCTTTAATC 57.250 29.630 0.00 0.00 35.02 1.75
2569 2676 9.936759 AAAGAAGTGTTGTTTTCCAATCTTTAA 57.063 25.926 0.00 0.00 37.10 1.52
2571 2678 9.586435 CTAAAGAAGTGTTGTTTTCCAATCTTT 57.414 29.630 0.00 0.00 39.84 2.52
2572 2679 7.706607 GCTAAAGAAGTGTTGTTTTCCAATCTT 59.293 33.333 0.00 0.00 32.60 2.40
2573 2680 7.068716 AGCTAAAGAAGTGTTGTTTTCCAATCT 59.931 33.333 0.00 0.00 35.02 2.40
2574 2681 7.168135 CAGCTAAAGAAGTGTTGTTTTCCAATC 59.832 37.037 0.00 0.00 35.02 2.67
2575 2682 6.980397 CAGCTAAAGAAGTGTTGTTTTCCAAT 59.020 34.615 0.00 0.00 35.02 3.16
2576 2683 6.329496 CAGCTAAAGAAGTGTTGTTTTCCAA 58.671 36.000 0.00 0.00 0.00 3.53
2577 2684 5.163561 CCAGCTAAAGAAGTGTTGTTTTCCA 60.164 40.000 0.00 0.00 0.00 3.53
2578 2685 5.067283 TCCAGCTAAAGAAGTGTTGTTTTCC 59.933 40.000 0.00 0.00 0.00 3.13
2579 2686 6.038271 TCTCCAGCTAAAGAAGTGTTGTTTTC 59.962 38.462 0.00 0.00 0.00 2.29
2580 2687 5.885912 TCTCCAGCTAAAGAAGTGTTGTTTT 59.114 36.000 0.00 0.00 0.00 2.43
2581 2688 5.437060 TCTCCAGCTAAAGAAGTGTTGTTT 58.563 37.500 0.00 0.00 0.00 2.83
2582 2689 5.036117 TCTCCAGCTAAAGAAGTGTTGTT 57.964 39.130 0.00 0.00 0.00 2.83
2583 2690 4.689612 TCTCCAGCTAAAGAAGTGTTGT 57.310 40.909 0.00 0.00 0.00 3.32
2584 2691 6.377327 TTTTCTCCAGCTAAAGAAGTGTTG 57.623 37.500 9.25 0.00 33.32 3.33
2585 2692 7.939588 AGTATTTTCTCCAGCTAAAGAAGTGTT 59.060 33.333 9.25 1.65 33.32 3.32
2586 2693 7.389053 CAGTATTTTCTCCAGCTAAAGAAGTGT 59.611 37.037 9.25 4.30 33.32 3.55
2587 2694 7.604164 TCAGTATTTTCTCCAGCTAAAGAAGTG 59.396 37.037 9.25 3.85 33.32 3.16
2588 2695 7.680730 TCAGTATTTTCTCCAGCTAAAGAAGT 58.319 34.615 9.25 6.38 33.32 3.01
2589 2696 8.447053 GTTCAGTATTTTCTCCAGCTAAAGAAG 58.553 37.037 9.25 0.09 33.32 2.85
2590 2697 8.157476 AGTTCAGTATTTTCTCCAGCTAAAGAA 58.843 33.333 5.98 5.98 0.00 2.52
2591 2698 7.680730 AGTTCAGTATTTTCTCCAGCTAAAGA 58.319 34.615 0.00 0.00 0.00 2.52
2592 2699 7.913674 AGTTCAGTATTTTCTCCAGCTAAAG 57.086 36.000 0.00 0.00 0.00 1.85
2593 2700 9.216117 GTTAGTTCAGTATTTTCTCCAGCTAAA 57.784 33.333 0.00 0.00 0.00 1.85
2594 2701 7.822822 GGTTAGTTCAGTATTTTCTCCAGCTAA 59.177 37.037 0.00 0.00 0.00 3.09
2595 2702 7.328737 GGTTAGTTCAGTATTTTCTCCAGCTA 58.671 38.462 0.00 0.00 0.00 3.32
2596 2703 6.174049 GGTTAGTTCAGTATTTTCTCCAGCT 58.826 40.000 0.00 0.00 0.00 4.24
2597 2704 5.354513 GGGTTAGTTCAGTATTTTCTCCAGC 59.645 44.000 0.00 0.00 0.00 4.85
2598 2705 6.595716 CAGGGTTAGTTCAGTATTTTCTCCAG 59.404 42.308 0.00 0.00 0.00 3.86
2599 2706 6.472887 CAGGGTTAGTTCAGTATTTTCTCCA 58.527 40.000 0.00 0.00 0.00 3.86
2600 2707 5.354513 GCAGGGTTAGTTCAGTATTTTCTCC 59.645 44.000 0.00 0.00 0.00 3.71
2601 2708 5.938125 TGCAGGGTTAGTTCAGTATTTTCTC 59.062 40.000 0.00 0.00 0.00 2.87
2602 2709 5.876357 TGCAGGGTTAGTTCAGTATTTTCT 58.124 37.500 0.00 0.00 0.00 2.52
2603 2710 6.569179 TTGCAGGGTTAGTTCAGTATTTTC 57.431 37.500 0.00 0.00 0.00 2.29
2604 2711 6.239204 GGTTTGCAGGGTTAGTTCAGTATTTT 60.239 38.462 0.00 0.00 0.00 1.82
2605 2712 5.243060 GGTTTGCAGGGTTAGTTCAGTATTT 59.757 40.000 0.00 0.00 0.00 1.40
2606 2713 4.765339 GGTTTGCAGGGTTAGTTCAGTATT 59.235 41.667 0.00 0.00 0.00 1.89
2607 2714 4.202524 TGGTTTGCAGGGTTAGTTCAGTAT 60.203 41.667 0.00 0.00 0.00 2.12
2608 2715 3.136809 TGGTTTGCAGGGTTAGTTCAGTA 59.863 43.478 0.00 0.00 0.00 2.74
2609 2716 2.092103 TGGTTTGCAGGGTTAGTTCAGT 60.092 45.455 0.00 0.00 0.00 3.41
2610 2717 2.582052 TGGTTTGCAGGGTTAGTTCAG 58.418 47.619 0.00 0.00 0.00 3.02
2611 2718 2.691011 GTTGGTTTGCAGGGTTAGTTCA 59.309 45.455 0.00 0.00 0.00 3.18
2612 2719 2.287368 CGTTGGTTTGCAGGGTTAGTTC 60.287 50.000 0.00 0.00 0.00 3.01
2613 2720 1.679153 CGTTGGTTTGCAGGGTTAGTT 59.321 47.619 0.00 0.00 0.00 2.24
2614 2721 1.314730 CGTTGGTTTGCAGGGTTAGT 58.685 50.000 0.00 0.00 0.00 2.24
2615 2722 0.596082 CCGTTGGTTTGCAGGGTTAG 59.404 55.000 0.00 0.00 0.00 2.34
2616 2723 0.183014 TCCGTTGGTTTGCAGGGTTA 59.817 50.000 0.00 0.00 0.00 2.85
2617 2724 0.469144 ATCCGTTGGTTTGCAGGGTT 60.469 50.000 0.00 0.00 0.00 4.11
2618 2725 1.152830 ATCCGTTGGTTTGCAGGGT 59.847 52.632 0.00 0.00 0.00 4.34
2619 2726 1.586028 CATCCGTTGGTTTGCAGGG 59.414 57.895 0.00 0.00 0.00 4.45
2620 2727 0.893270 TCCATCCGTTGGTTTGCAGG 60.893 55.000 1.96 0.00 46.52 4.85
2621 2728 1.176527 ATCCATCCGTTGGTTTGCAG 58.823 50.000 1.96 0.00 46.52 4.41
2622 2729 1.626686 AATCCATCCGTTGGTTTGCA 58.373 45.000 1.96 0.00 46.52 4.08
2623 2730 2.029470 TCAAATCCATCCGTTGGTTTGC 60.029 45.455 16.22 0.00 46.52 3.68
2624 2731 3.932545 TCAAATCCATCCGTTGGTTTG 57.067 42.857 15.55 15.55 46.52 2.93
2625 2732 4.322650 CCAATCAAATCCATCCGTTGGTTT 60.323 41.667 1.96 0.00 46.52 3.27
2626 2733 3.195396 CCAATCAAATCCATCCGTTGGTT 59.805 43.478 1.96 0.00 46.52 3.67
2627 2734 2.760092 CCAATCAAATCCATCCGTTGGT 59.240 45.455 1.96 0.00 46.52 3.67
2629 2736 4.640201 AGTACCAATCAAATCCATCCGTTG 59.360 41.667 0.00 0.00 0.00 4.10
2630 2737 4.855340 AGTACCAATCAAATCCATCCGTT 58.145 39.130 0.00 0.00 0.00 4.44
2631 2738 4.451900 GAGTACCAATCAAATCCATCCGT 58.548 43.478 0.00 0.00 0.00 4.69
2632 2739 3.815401 GGAGTACCAATCAAATCCATCCG 59.185 47.826 0.00 0.00 35.97 4.18
2633 2740 4.792068 TGGAGTACCAATCAAATCCATCC 58.208 43.478 0.00 0.00 43.91 3.51
2646 2753 3.563697 CCTGGAGTAGAGTTGGAGTACCA 60.564 52.174 0.00 0.00 45.34 3.25
2647 2754 3.025262 CCTGGAGTAGAGTTGGAGTACC 58.975 54.545 0.00 0.00 0.00 3.34
2648 2755 3.025262 CCCTGGAGTAGAGTTGGAGTAC 58.975 54.545 0.00 0.00 0.00 2.73
2649 2756 2.924302 TCCCTGGAGTAGAGTTGGAGTA 59.076 50.000 0.00 0.00 0.00 2.59
2650 2757 1.717077 TCCCTGGAGTAGAGTTGGAGT 59.283 52.381 0.00 0.00 0.00 3.85
2651 2758 2.383855 CTCCCTGGAGTAGAGTTGGAG 58.616 57.143 4.97 0.00 37.47 3.86
2652 2759 2.534042 CTCCCTGGAGTAGAGTTGGA 57.466 55.000 4.97 0.00 37.47 3.53
2662 2769 1.657804 AACCTTGGTACTCCCTGGAG 58.342 55.000 11.68 11.68 46.91 3.86
2663 2770 2.127651 AAACCTTGGTACTCCCTGGA 57.872 50.000 0.00 0.00 33.55 3.86
2664 2771 2.375509 AGAAAACCTTGGTACTCCCTGG 59.624 50.000 0.00 0.00 34.86 4.45
2665 2772 3.790089 AGAAAACCTTGGTACTCCCTG 57.210 47.619 0.00 0.00 0.00 4.45
2666 2773 4.100279 CAAGAAAACCTTGGTACTCCCT 57.900 45.455 0.00 0.00 46.54 4.20
2675 2782 8.244113 AACAGAAGTTCTTACAAGAAAACCTTG 58.756 33.333 1.56 0.00 45.77 3.61
2676 2783 7.939784 ACAGAAGTTCTTACAAGAAAACCTT 57.060 32.000 1.56 6.00 45.77 3.50
2677 2784 7.939784 AACAGAAGTTCTTACAAGAAAACCT 57.060 32.000 1.56 1.73 45.77 3.50
3018 3133 7.827729 ACTACCATATTTAAATAATCGAGGGCC 59.172 37.037 11.80 0.00 0.00 5.80
3180 3300 3.762779 CGAATCCACCATTGAAAGCTTC 58.237 45.455 0.00 0.00 0.00 3.86
3515 4122 3.136077 ACAGCTCATCTGCACCAAGATAT 59.864 43.478 0.00 0.00 46.76 1.63
3516 4123 2.502947 ACAGCTCATCTGCACCAAGATA 59.497 45.455 0.00 0.00 46.76 1.98
3722 4332 1.914108 ACCTCTAAGTTTGGTAGGCCC 59.086 52.381 0.00 0.00 31.50 5.80
3845 4482 2.802057 GCGTTCCAGCGTGGTATAGAAT 60.802 50.000 4.33 0.00 39.03 2.40
4449 5109 4.332819 AGGCAGAAGCAATACATACGAAAC 59.667 41.667 0.00 0.00 44.61 2.78
4457 5359 4.014569 TGTGTAAGGCAGAAGCAATACA 57.985 40.909 0.00 0.00 44.61 2.29
4461 5363 2.030007 GCAATGTGTAAGGCAGAAGCAA 60.030 45.455 0.00 0.00 44.61 3.91
5057 5977 0.179026 GCCGGGGTAATCCTCCTTTC 60.179 60.000 2.18 0.00 35.33 2.62
5104 6025 5.066505 GGTCTGCGAAATCTTGAATAATGGT 59.933 40.000 0.00 0.00 0.00 3.55
5150 6071 9.793259 ATTGGAGAGAGTAACATTAAAGAAACA 57.207 29.630 0.00 0.00 0.00 2.83
5174 6095 5.806654 AACAGTGGCACTTATTTTGGATT 57.193 34.783 19.43 0.00 0.00 3.01
5262 6183 9.434420 CAAATGGTGTGTGGAATAACATAAATT 57.566 29.630 0.00 0.00 31.49 1.82
5313 6475 6.145371 CAGAGAACTAGAGTCTTGACTTTTGC 59.855 42.308 8.66 0.00 0.00 3.68
5399 6576 4.042062 CCACCAAGATAAGAGGCATGGATA 59.958 45.833 0.00 0.00 0.00 2.59
5501 6678 7.280205 AGTTGTATAGCAGCACAGGTATAAAAC 59.720 37.037 18.54 18.54 44.90 2.43
5503 6680 6.884832 AGTTGTATAGCAGCACAGGTATAAA 58.115 36.000 0.00 0.00 36.53 1.40
5504 6681 6.479972 AGTTGTATAGCAGCACAGGTATAA 57.520 37.500 0.00 0.00 36.53 0.98
5505 6682 7.093902 GGATAGTTGTATAGCAGCACAGGTATA 60.094 40.741 0.00 0.00 34.36 1.47
5606 6940 2.037641 CCCTCTGCAACATATGATCGGA 59.962 50.000 10.38 7.24 0.00 4.55
5667 7056 0.249911 AGAACCACCGCTGTGAAGAC 60.250 55.000 10.15 0.00 45.76 3.01
5998 7387 2.882761 GTTACAGGACCAAAGGTTCACC 59.117 50.000 0.00 0.00 35.25 4.02
6010 7399 8.958506 TCTTTACATCTCTCTAAGTTACAGGAC 58.041 37.037 0.00 0.00 0.00 3.85
6063 8545 6.762702 TCCGGTAACAAGAAGTTTCTTTTT 57.237 33.333 0.00 7.62 44.70 1.94
6068 8550 8.713737 ATTACTATCCGGTAACAAGAAGTTTC 57.286 34.615 0.00 0.00 41.64 2.78
6082 8565 5.794894 ACTGCAGGAAATATTACTATCCGG 58.205 41.667 19.93 0.00 37.05 5.14
6148 8631 2.343426 GGCTAGCAGCGCCCTTTTT 61.343 57.895 18.24 0.00 43.62 1.94
6149 8632 2.751837 GGCTAGCAGCGCCCTTTT 60.752 61.111 18.24 0.00 43.62 2.27
6156 8639 4.271816 ATCGGACGGCTAGCAGCG 62.272 66.667 18.24 14.33 43.62 5.18
6157 8640 1.516365 TAGATCGGACGGCTAGCAGC 61.516 60.000 18.24 8.78 41.46 5.25
6158 8641 0.519519 CTAGATCGGACGGCTAGCAG 59.480 60.000 18.24 15.90 0.00 4.24
6159 8642 0.889638 CCTAGATCGGACGGCTAGCA 60.890 60.000 18.24 0.00 32.28 3.49
6160 8643 1.877367 CCTAGATCGGACGGCTAGC 59.123 63.158 6.04 6.04 32.28 3.42
6161 8644 1.587933 GGCCTAGATCGGACGGCTAG 61.588 65.000 14.27 12.38 42.13 3.42
6162 8645 1.602888 GGCCTAGATCGGACGGCTA 60.603 63.158 14.27 0.00 42.13 3.93
6163 8646 2.913060 GGCCTAGATCGGACGGCT 60.913 66.667 14.27 0.00 42.13 5.52
6164 8647 3.992317 GGGCCTAGATCGGACGGC 61.992 72.222 0.84 8.49 41.75 5.68
6165 8648 2.421923 TAGGGGCCTAGATCGGACGG 62.422 65.000 0.84 0.00 30.57 4.79
6166 8649 1.074423 TAGGGGCCTAGATCGGACG 59.926 63.158 0.84 0.00 30.57 4.79
6167 8650 0.178970 TGTAGGGGCCTAGATCGGAC 60.179 60.000 0.84 0.00 0.00 4.79
6168 8651 0.112606 CTGTAGGGGCCTAGATCGGA 59.887 60.000 0.84 0.00 0.00 4.55
6169 8652 1.536943 GCTGTAGGGGCCTAGATCGG 61.537 65.000 0.84 0.00 0.00 4.18
6170 8653 1.536943 GGCTGTAGGGGCCTAGATCG 61.537 65.000 0.84 0.00 45.57 3.69
6171 8654 2.367529 GGCTGTAGGGGCCTAGATC 58.632 63.158 0.84 0.00 45.57 2.75
6172 8655 4.650085 GGCTGTAGGGGCCTAGAT 57.350 61.111 0.84 0.00 45.57 1.98
6178 8661 0.106015 AATCCAATGGCTGTAGGGGC 60.106 55.000 0.00 0.00 0.00 5.80
6179 8662 1.063717 ACAATCCAATGGCTGTAGGGG 60.064 52.381 5.23 0.00 0.00 4.79
6180 8663 2.442236 ACAATCCAATGGCTGTAGGG 57.558 50.000 5.23 0.00 0.00 3.53
6181 8664 3.763360 TGAAACAATCCAATGGCTGTAGG 59.237 43.478 7.17 0.00 0.00 3.18
6182 8665 5.047802 AGTTGAAACAATCCAATGGCTGTAG 60.048 40.000 7.17 0.00 0.00 2.74
6183 8666 4.832266 AGTTGAAACAATCCAATGGCTGTA 59.168 37.500 7.17 0.00 0.00 2.74
6184 8667 3.642848 AGTTGAAACAATCCAATGGCTGT 59.357 39.130 0.00 0.00 0.00 4.40
6185 8668 4.261578 AGTTGAAACAATCCAATGGCTG 57.738 40.909 0.00 0.00 0.00 4.85
6186 8669 4.961438 AAGTTGAAACAATCCAATGGCT 57.039 36.364 0.00 0.00 0.00 4.75
6187 8670 5.170748 CCTAAGTTGAAACAATCCAATGGC 58.829 41.667 0.00 0.00 0.00 4.40
6188 8671 5.170748 GCCTAAGTTGAAACAATCCAATGG 58.829 41.667 0.00 0.00 0.00 3.16
6189 8672 5.170748 GGCCTAAGTTGAAACAATCCAATG 58.829 41.667 0.00 0.00 0.00 2.82
6190 8673 4.837860 TGGCCTAAGTTGAAACAATCCAAT 59.162 37.500 3.32 0.00 0.00 3.16
6191 8674 4.219115 TGGCCTAAGTTGAAACAATCCAA 58.781 39.130 3.32 0.00 0.00 3.53
6192 8675 3.838565 TGGCCTAAGTTGAAACAATCCA 58.161 40.909 3.32 0.00 0.00 3.41
6193 8676 4.280929 AGTTGGCCTAAGTTGAAACAATCC 59.719 41.667 3.32 0.00 0.00 3.01
6194 8677 5.453567 AGTTGGCCTAAGTTGAAACAATC 57.546 39.130 3.32 0.00 0.00 2.67
6195 8678 4.280929 GGAGTTGGCCTAAGTTGAAACAAT 59.719 41.667 3.32 0.00 0.00 2.71
6196 8679 3.634910 GGAGTTGGCCTAAGTTGAAACAA 59.365 43.478 3.32 0.00 0.00 2.83
6197 8680 3.219281 GGAGTTGGCCTAAGTTGAAACA 58.781 45.455 3.32 0.00 0.00 2.83
6198 8681 3.219281 TGGAGTTGGCCTAAGTTGAAAC 58.781 45.455 3.32 0.00 0.00 2.78
6199 8682 3.486383 CTGGAGTTGGCCTAAGTTGAAA 58.514 45.455 3.32 0.00 0.00 2.69
6200 8683 2.814097 GCTGGAGTTGGCCTAAGTTGAA 60.814 50.000 3.32 0.00 0.00 2.69
6201 8684 1.271379 GCTGGAGTTGGCCTAAGTTGA 60.271 52.381 3.32 0.00 0.00 3.18
6202 8685 1.168714 GCTGGAGTTGGCCTAAGTTG 58.831 55.000 3.32 0.00 0.00 3.16
6203 8686 0.321653 CGCTGGAGTTGGCCTAAGTT 60.322 55.000 3.32 0.00 0.00 2.66
6204 8687 1.296715 CGCTGGAGTTGGCCTAAGT 59.703 57.895 3.32 0.00 0.00 2.24
6224 8707 3.075005 CGGACAGGATGGGGTCGT 61.075 66.667 0.00 0.00 43.62 4.34
6269 8753 3.505184 CGTTGGGCCGCGCTATTT 61.505 61.111 5.56 0.00 0.00 1.40
6355 8839 0.547075 TCCGTTTCACCCCAAACTCA 59.453 50.000 0.00 0.00 34.59 3.41
6463 8948 4.348495 GGTGGGGAGAGGGGGTGA 62.348 72.222 0.00 0.00 0.00 4.02
6489 8974 0.800631 AATAGTGACGACGTCAGCGA 59.199 50.000 29.86 19.74 43.57 4.93
6493 8978 1.395954 CGGAGAATAGTGACGACGTCA 59.604 52.381 26.04 26.04 40.50 4.35
6495 8980 0.731417 CCGGAGAATAGTGACGACGT 59.269 55.000 0.00 0.00 0.00 4.34
6501 8986 0.687757 AGGCAGCCGGAGAATAGTGA 60.688 55.000 5.05 0.00 0.00 3.41
6537 9025 2.437002 TTTGGTATGGACGGCCGC 60.437 61.111 28.58 18.35 36.79 6.53
6665 9153 2.179767 CGTGGTACATCGCCGACA 59.820 61.111 0.00 0.00 44.52 4.35
6890 9378 0.321919 TGCAGCCACCACAAGATCTC 60.322 55.000 0.00 0.00 0.00 2.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.