Multiple sequence alignment - TraesCS2A01G425100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G425100 chr2A 100.000 5608 0 0 524 6131 678971172 678965565 0.000000e+00 10357.0
1 TraesCS2A01G425100 chr2A 77.291 2193 400 70 2002 4137 679265946 679263795 0.000000e+00 1201.0
2 TraesCS2A01G425100 chr2A 100.000 220 0 0 1 220 678971695 678971476 2.060000e-109 407.0
3 TraesCS2A01G425100 chr2A 77.971 345 68 8 4739 5079 733680907 733680567 6.230000e-50 209.0
4 TraesCS2A01G425100 chr2A 76.557 273 64 0 1098 1370 679266996 679266724 3.830000e-32 150.0
5 TraesCS2A01G425100 chr2A 92.222 90 6 1 5459 5547 65084902 65084813 6.450000e-25 126.0
6 TraesCS2A01G425100 chr2D 95.055 3822 166 19 725 4539 536159011 536155206 0.000000e+00 5989.0
7 TraesCS2A01G425100 chr2D 86.333 2056 227 34 2440 4456 536226227 536224187 0.000000e+00 2191.0
8 TraesCS2A01G425100 chr2D 77.422 2188 392 71 2008 4137 536509443 536507300 0.000000e+00 1210.0
9 TraesCS2A01G425100 chr2D 77.047 1869 342 63 2001 3818 599948741 599946909 0.000000e+00 994.0
10 TraesCS2A01G425100 chr2D 84.985 979 92 31 794 1739 536227880 536226924 0.000000e+00 942.0
11 TraesCS2A01G425100 chr2D 77.203 1623 311 43 1980 3571 539310859 539309265 0.000000e+00 893.0
12 TraesCS2A01G425100 chr2D 92.270 608 23 9 5308 5901 536154483 536153886 0.000000e+00 841.0
13 TraesCS2A01G425100 chr2D 93.583 561 26 6 4721 5278 536155169 536154616 0.000000e+00 828.0
14 TraesCS2A01G425100 chr2D 86.679 563 71 3 1937 2495 536226791 536226229 6.750000e-174 621.0
15 TraesCS2A01G425100 chr2D 84.884 516 66 11 3638 4147 536383095 536382586 1.520000e-140 510.0
16 TraesCS2A01G425100 chr2D 87.980 391 38 7 4723 5110 536224108 536223724 2.610000e-123 453.0
17 TraesCS2A01G425100 chr2D 81.842 380 65 4 3194 3571 536383797 536383420 3.570000e-82 316.0
18 TraesCS2A01G425100 chr2D 79.140 465 81 12 2673 3124 536384304 536383843 2.150000e-79 307.0
19 TraesCS2A01G425100 chr2D 90.583 223 13 3 524 741 536160564 536160345 7.780000e-74 289.0
20 TraesCS2A01G425100 chr2D 78.877 374 74 4 4734 5106 536382033 536381664 1.320000e-61 248.0
21 TraesCS2A01G425100 chr2D 77.174 276 59 4 1098 1371 536510327 536510054 2.290000e-34 158.0
22 TraesCS2A01G425100 chr2D 77.974 227 25 18 5921 6131 536153818 536153601 1.080000e-22 119.0
23 TraesCS2A01G425100 chr2D 96.667 60 2 0 4618 4677 536155213 536155154 3.910000e-17 100.0
24 TraesCS2A01G425100 chr2D 100.000 28 0 0 5897 5924 536153866 536153839 1.100000e-02 52.8
25 TraesCS2A01G425100 chr2B 85.062 2738 347 45 1834 4526 638264966 638262246 0.000000e+00 2734.0
26 TraesCS2A01G425100 chr2B 84.841 2698 334 44 1834 4485 637767986 637765318 0.000000e+00 2647.0
27 TraesCS2A01G425100 chr2B 90.756 1071 69 13 626 1683 637707415 637706362 0.000000e+00 1402.0
28 TraesCS2A01G425100 chr2B 83.498 1521 187 25 3040 4526 637995121 637993631 0.000000e+00 1360.0
29 TraesCS2A01G425100 chr2B 77.422 2188 390 76 2002 4133 638758150 638756011 0.000000e+00 1208.0
30 TraesCS2A01G425100 chr2B 84.026 1227 163 24 1834 3044 637998049 637996840 0.000000e+00 1149.0
31 TraesCS2A01G425100 chr2B 94.505 728 33 5 3696 4421 637681198 637680476 0.000000e+00 1116.0
32 TraesCS2A01G425100 chr2B 79.143 1611 293 32 1986 3571 637933350 637931758 0.000000e+00 1074.0
33 TraesCS2A01G425100 chr2B 77.540 1870 334 63 2001 3818 729901759 729899924 0.000000e+00 1048.0
34 TraesCS2A01G425100 chr2B 85.159 977 94 29 794 1741 637768991 637768037 0.000000e+00 953.0
35 TraesCS2A01G425100 chr2B 84.568 972 101 30 794 1739 638265967 638265019 0.000000e+00 918.0
36 TraesCS2A01G425100 chr2B 86.311 862 88 24 901 1739 637998956 637998102 0.000000e+00 911.0
37 TraesCS2A01G425100 chr2B 88.079 755 34 24 5430 6131 637577523 637576772 0.000000e+00 845.0
38 TraesCS2A01G425100 chr2B 94.653 505 26 1 3186 3690 637696710 637696207 0.000000e+00 782.0
39 TraesCS2A01G425100 chr2B 94.177 498 26 3 4721 5216 637582879 637582383 0.000000e+00 756.0
40 TraesCS2A01G425100 chr2B 81.834 578 90 14 3578 4147 637778491 637777921 7.190000e-129 472.0
41 TraesCS2A01G425100 chr2B 88.402 388 43 2 4723 5110 638262189 638261804 3.350000e-127 466.0
42 TraesCS2A01G425100 chr2B 87.371 388 46 3 4723 5110 637765209 637764825 5.640000e-120 442.0
43 TraesCS2A01G425100 chr2B 86.856 388 49 2 4723 5110 637993574 637993189 3.390000e-117 433.0
44 TraesCS2A01G425100 chr2B 79.118 340 69 2 4735 5073 637777365 637777027 3.700000e-57 233.0
45 TraesCS2A01G425100 chr2B 91.200 125 10 1 5305 5428 637582158 637582034 1.060000e-37 169.0
46 TraesCS2A01G425100 chr2B 96.667 60 2 0 4618 4677 637582923 637582864 3.910000e-17 100.0
47 TraesCS2A01G425100 chr3D 92.941 85 6 0 4538 4622 66406772 66406688 2.320000e-24 124.0
48 TraesCS2A01G425100 chr3B 92.135 89 6 1 4538 4625 738379694 738379782 2.320000e-24 124.0
49 TraesCS2A01G425100 chr6D 92.857 84 6 0 5469 5552 427344864 427344947 8.350000e-24 122.0
50 TraesCS2A01G425100 chr7A 91.765 85 7 0 4538 4622 168872249 168872333 1.080000e-22 119.0
51 TraesCS2A01G425100 chr6B 91.011 89 7 1 5460 5547 13827525 13827613 1.080000e-22 119.0
52 TraesCS2A01G425100 chr6B 86.408 103 12 2 5447 5547 122970807 122970909 1.810000e-20 111.0
53 TraesCS2A01G425100 chr6A 91.765 85 7 0 5468 5552 572128696 572128780 1.080000e-22 119.0
54 TraesCS2A01G425100 chr1D 91.011 89 6 2 5465 5553 87661114 87661028 1.080000e-22 119.0
55 TraesCS2A01G425100 chr7D 90.110 91 8 1 5458 5547 167548417 167548507 3.880000e-22 117.0
56 TraesCS2A01G425100 chr7D 90.588 85 7 1 4538 4622 167359521 167359604 1.810000e-20 111.0
57 TraesCS2A01G425100 chr1A 88.542 96 10 1 5458 5552 518662848 518662753 1.400000e-21 115.0
58 TraesCS2A01G425100 chr7B 88.372 86 8 2 4538 4622 588875239 588875323 1.090000e-17 102.0
59 TraesCS2A01G425100 chr5A 88.235 85 10 0 4539 4623 688702456 688702540 1.090000e-17 102.0
60 TraesCS2A01G425100 chr5A 90.164 61 6 0 4538 4598 339746416 339746476 5.090000e-11 80.5
61 TraesCS2A01G425100 chr5B 82.979 94 12 4 4534 4626 580983271 580983181 1.420000e-11 82.4
62 TraesCS2A01G425100 chr4A 81.818 88 13 3 4538 4624 648334360 648334445 3.070000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G425100 chr2A 678965565 678971695 6130 True 5382.000000 10357 100.000000 1 6131 2 chr2A.!!$R3 6130
1 TraesCS2A01G425100 chr2A 679263795 679266996 3201 True 675.500000 1201 76.924000 1098 4137 2 chr2A.!!$R4 3039
2 TraesCS2A01G425100 chr2D 536153601 536160564 6963 True 1174.114286 5989 92.304571 524 6131 7 chr2D.!!$R3 5607
3 TraesCS2A01G425100 chr2D 536223724 536227880 4156 True 1051.750000 2191 86.494250 794 5110 4 chr2D.!!$R4 4316
4 TraesCS2A01G425100 chr2D 599946909 599948741 1832 True 994.000000 994 77.047000 2001 3818 1 chr2D.!!$R2 1817
5 TraesCS2A01G425100 chr2D 539309265 539310859 1594 True 893.000000 893 77.203000 1980 3571 1 chr2D.!!$R1 1591
6 TraesCS2A01G425100 chr2D 536507300 536510327 3027 True 684.000000 1210 77.298000 1098 4137 2 chr2D.!!$R6 3039
7 TraesCS2A01G425100 chr2D 536381664 536384304 2640 True 345.250000 510 81.185750 2673 5106 4 chr2D.!!$R5 2433
8 TraesCS2A01G425100 chr2B 637706362 637707415 1053 True 1402.000000 1402 90.756000 626 1683 1 chr2B.!!$R4 1057
9 TraesCS2A01G425100 chr2B 638261804 638265967 4163 True 1372.666667 2734 86.010667 794 5110 3 chr2B.!!$R12 4316
10 TraesCS2A01G425100 chr2B 637764825 637768991 4166 True 1347.333333 2647 85.790333 794 5110 3 chr2B.!!$R9 4316
11 TraesCS2A01G425100 chr2B 638756011 638758150 2139 True 1208.000000 1208 77.422000 2002 4133 1 chr2B.!!$R6 2131
12 TraesCS2A01G425100 chr2B 637680476 637681198 722 True 1116.000000 1116 94.505000 3696 4421 1 chr2B.!!$R2 725
13 TraesCS2A01G425100 chr2B 637931758 637933350 1592 True 1074.000000 1074 79.143000 1986 3571 1 chr2B.!!$R5 1585
14 TraesCS2A01G425100 chr2B 729899924 729901759 1835 True 1048.000000 1048 77.540000 2001 3818 1 chr2B.!!$R7 1817
15 TraesCS2A01G425100 chr2B 637993189 637998956 5767 True 963.250000 1360 85.172750 901 5110 4 chr2B.!!$R11 4209
16 TraesCS2A01G425100 chr2B 637576772 637577523 751 True 845.000000 845 88.079000 5430 6131 1 chr2B.!!$R1 701
17 TraesCS2A01G425100 chr2B 637696207 637696710 503 True 782.000000 782 94.653000 3186 3690 1 chr2B.!!$R3 504
18 TraesCS2A01G425100 chr2B 637777027 637778491 1464 True 352.500000 472 80.476000 3578 5073 2 chr2B.!!$R10 1495
19 TraesCS2A01G425100 chr2B 637582034 637582923 889 True 341.666667 756 94.014667 4618 5428 3 chr2B.!!$R8 810

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
150 151 0.035630 GAGCCAGTCCACATGCTCTT 60.036 55.0 11.29 0.00 45.21 2.85 F
153 154 0.036952 CCAGTCCACATGCTCTTCGT 60.037 55.0 0.00 0.00 0.00 3.85 F
175 176 0.178533 ACTCTCCTCCGTAGACCTCG 59.821 60.0 0.00 0.00 0.00 4.63 F
184 185 0.247974 CGTAGACCTCGGTAGCGTTG 60.248 60.0 14.79 9.07 0.00 4.10 F
185 186 0.807496 GTAGACCTCGGTAGCGTTGT 59.193 55.0 14.79 12.26 0.00 3.32 F
211 212 0.807667 CTCCGAAACCCTCATCGCAG 60.808 60.0 0.00 0.00 37.73 5.18 F
1218 2593 0.877071 CATGCTTCCCACAGTGTGTC 59.123 55.0 21.48 6.21 0.00 3.67 F
2600 4402 0.693049 CAGGTACTTCCTTGGGCAGT 59.307 55.0 0.00 0.00 45.67 4.40 F
4175 8040 0.247419 GACGCACATCACATTCGCAG 60.247 55.0 0.00 0.00 0.00 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1866 3588 0.036164 TGACATGTGTCCCCCTTTCG 59.964 55.000 1.15 0.00 44.15 3.46 R
2120 3850 1.302033 AGCAGCAGTTGTCGAAGGG 60.302 57.895 0.00 0.00 0.00 3.95 R
2267 4002 7.799784 TGCAAAAGTCTATTTCGTTAGGTAAC 58.200 34.615 0.00 0.00 0.00 2.50 R
2323 4060 6.939132 AGAATCTACCATTGAAAGCTGATG 57.061 37.500 0.00 0.00 0.00 3.07 R
2381 4118 4.630111 GTCCAGGATGCTCTTTATCTCAG 58.370 47.826 0.00 0.00 31.97 3.35 R
2472 4273 1.399440 CCAGAAACTGCGATGTGGATG 59.601 52.381 0.00 0.00 0.00 3.51 R
3179 6751 1.528076 TTGACGCAACATGGCCTGT 60.528 52.632 3.32 2.75 40.84 4.00 R
4560 8678 0.031917 TATAGGTTCCCCCAGCGACA 60.032 55.000 0.00 0.00 34.66 4.35 R
5301 9463 0.033920 ACGATGCAGCAGAGTTGACA 59.966 50.000 1.53 0.00 0.00 3.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 8.115490 CAAAAGAGTCAAAGAATATGGGTTCT 57.885 34.615 0.00 0.00 40.05 3.01
58 59 9.946165 AAAATACACACTAGTTGAAAGTTTAGC 57.054 29.630 10.71 0.00 0.00 3.09
59 60 8.904099 AATACACACTAGTTGAAAGTTTAGCT 57.096 30.769 10.71 0.00 0.00 3.32
60 61 6.846325 ACACACTAGTTGAAAGTTTAGCTC 57.154 37.500 10.71 0.00 0.00 4.09
61 62 6.583562 ACACACTAGTTGAAAGTTTAGCTCT 58.416 36.000 10.71 0.00 0.00 4.09
62 63 7.048512 ACACACTAGTTGAAAGTTTAGCTCTT 58.951 34.615 10.71 0.00 0.00 2.85
63 64 7.011482 ACACACTAGTTGAAAGTTTAGCTCTTG 59.989 37.037 10.71 0.00 0.00 3.02
64 65 6.017852 ACACTAGTTGAAAGTTTAGCTCTTGC 60.018 38.462 0.00 0.00 40.05 4.01
65 66 6.017934 CACTAGTTGAAAGTTTAGCTCTTGCA 60.018 38.462 0.00 0.00 42.74 4.08
66 67 5.835113 AGTTGAAAGTTTAGCTCTTGCAA 57.165 34.783 0.00 0.00 42.74 4.08
67 68 5.825507 AGTTGAAAGTTTAGCTCTTGCAAG 58.174 37.500 20.81 20.81 39.98 4.01
68 69 4.836125 TGAAAGTTTAGCTCTTGCAAGG 57.164 40.909 25.73 17.00 42.74 3.61
69 70 4.207165 TGAAAGTTTAGCTCTTGCAAGGT 58.793 39.130 25.73 10.95 42.74 3.50
70 71 4.644685 TGAAAGTTTAGCTCTTGCAAGGTT 59.355 37.500 25.73 16.15 42.74 3.50
71 72 5.825679 TGAAAGTTTAGCTCTTGCAAGGTTA 59.174 36.000 25.73 15.21 42.74 2.85
72 73 5.948992 AAGTTTAGCTCTTGCAAGGTTAG 57.051 39.130 25.73 16.73 42.74 2.34
73 74 3.753797 AGTTTAGCTCTTGCAAGGTTAGC 59.246 43.478 25.73 24.77 42.74 3.09
74 75 3.703001 TTAGCTCTTGCAAGGTTAGCT 57.297 42.857 31.76 31.76 45.14 3.32
75 76 2.106477 AGCTCTTGCAAGGTTAGCTC 57.894 50.000 26.95 8.59 39.23 4.09
76 77 1.627834 AGCTCTTGCAAGGTTAGCTCT 59.372 47.619 26.95 12.86 39.23 4.09
77 78 2.039613 AGCTCTTGCAAGGTTAGCTCTT 59.960 45.455 26.95 12.28 39.23 2.85
78 79 2.161211 GCTCTTGCAAGGTTAGCTCTTG 59.839 50.000 25.73 8.85 43.10 3.02
86 87 4.974591 CAAGGTTAGCTCTTGCAATGTAC 58.025 43.478 0.00 0.00 42.74 2.90
87 88 4.559862 AGGTTAGCTCTTGCAATGTACT 57.440 40.909 0.00 0.00 42.74 2.73
88 89 5.677319 AGGTTAGCTCTTGCAATGTACTA 57.323 39.130 0.00 0.00 42.74 1.82
89 90 6.240549 AGGTTAGCTCTTGCAATGTACTAT 57.759 37.500 0.00 0.00 42.74 2.12
90 91 6.653989 AGGTTAGCTCTTGCAATGTACTATT 58.346 36.000 0.00 0.00 42.74 1.73
91 92 7.112779 AGGTTAGCTCTTGCAATGTACTATTT 58.887 34.615 0.00 0.00 42.74 1.40
92 93 8.265055 AGGTTAGCTCTTGCAATGTACTATTTA 58.735 33.333 0.00 0.00 42.74 1.40
93 94 9.057089 GGTTAGCTCTTGCAATGTACTATTTAT 57.943 33.333 0.00 0.00 42.74 1.40
114 115 7.667043 TTATTAAAGAAAGATCAGCGTGTGT 57.333 32.000 0.00 0.00 0.00 3.72
115 116 6.560253 ATTAAAGAAAGATCAGCGTGTGTT 57.440 33.333 0.00 0.00 0.00 3.32
116 117 4.900635 AAAGAAAGATCAGCGTGTGTTT 57.099 36.364 0.00 0.00 0.00 2.83
117 118 4.900635 AAGAAAGATCAGCGTGTGTTTT 57.099 36.364 0.00 0.00 0.00 2.43
118 119 4.474226 AGAAAGATCAGCGTGTGTTTTC 57.526 40.909 0.00 0.00 0.00 2.29
119 120 3.876914 AGAAAGATCAGCGTGTGTTTTCA 59.123 39.130 0.00 0.00 30.92 2.69
132 133 4.186241 GTGTTTTCACGCTAAGTTTCGA 57.814 40.909 4.55 0.00 41.13 3.71
133 134 4.201576 GTGTTTTCACGCTAAGTTTCGAG 58.798 43.478 4.55 0.00 41.13 4.04
134 135 3.216031 GTTTTCACGCTAAGTTTCGAGC 58.784 45.455 4.55 0.00 35.24 5.03
135 136 1.425412 TTCACGCTAAGTTTCGAGCC 58.575 50.000 4.55 0.00 35.13 4.70
136 137 0.315886 TCACGCTAAGTTTCGAGCCA 59.684 50.000 4.55 0.00 35.13 4.75
137 138 0.716108 CACGCTAAGTTTCGAGCCAG 59.284 55.000 4.55 0.00 35.13 4.85
138 139 0.317479 ACGCTAAGTTTCGAGCCAGT 59.683 50.000 4.55 0.00 35.13 4.00
139 140 0.992802 CGCTAAGTTTCGAGCCAGTC 59.007 55.000 0.00 0.00 35.13 3.51
140 141 1.360820 GCTAAGTTTCGAGCCAGTCC 58.639 55.000 0.00 0.00 32.25 3.85
141 142 1.337823 GCTAAGTTTCGAGCCAGTCCA 60.338 52.381 0.00 0.00 32.25 4.02
142 143 2.338500 CTAAGTTTCGAGCCAGTCCAC 58.662 52.381 0.00 0.00 0.00 4.02
143 144 0.468226 AAGTTTCGAGCCAGTCCACA 59.532 50.000 0.00 0.00 0.00 4.17
144 145 0.687354 AGTTTCGAGCCAGTCCACAT 59.313 50.000 0.00 0.00 0.00 3.21
145 146 0.798776 GTTTCGAGCCAGTCCACATG 59.201 55.000 0.00 0.00 0.00 3.21
146 147 0.955428 TTTCGAGCCAGTCCACATGC 60.955 55.000 0.00 0.00 0.00 4.06
147 148 1.830587 TTCGAGCCAGTCCACATGCT 61.831 55.000 0.00 0.00 36.62 3.79
148 149 1.812922 CGAGCCAGTCCACATGCTC 60.813 63.158 9.35 9.35 45.19 4.26
149 150 1.601171 GAGCCAGTCCACATGCTCT 59.399 57.895 11.29 0.00 45.21 4.09
150 151 0.035630 GAGCCAGTCCACATGCTCTT 60.036 55.000 11.29 0.00 45.21 2.85
151 152 0.035630 AGCCAGTCCACATGCTCTTC 60.036 55.000 0.00 0.00 0.00 2.87
152 153 1.364626 GCCAGTCCACATGCTCTTCG 61.365 60.000 0.00 0.00 0.00 3.79
153 154 0.036952 CCAGTCCACATGCTCTTCGT 60.037 55.000 0.00 0.00 0.00 3.85
154 155 1.609061 CCAGTCCACATGCTCTTCGTT 60.609 52.381 0.00 0.00 0.00 3.85
155 156 1.728971 CAGTCCACATGCTCTTCGTTC 59.271 52.381 0.00 0.00 0.00 3.95
156 157 1.344438 AGTCCACATGCTCTTCGTTCA 59.656 47.619 0.00 0.00 0.00 3.18
157 158 1.461127 GTCCACATGCTCTTCGTTCAC 59.539 52.381 0.00 0.00 0.00 3.18
158 159 1.344438 TCCACATGCTCTTCGTTCACT 59.656 47.619 0.00 0.00 0.00 3.41
159 160 1.728971 CCACATGCTCTTCGTTCACTC 59.271 52.381 0.00 0.00 0.00 3.51
160 161 2.611473 CCACATGCTCTTCGTTCACTCT 60.611 50.000 0.00 0.00 0.00 3.24
161 162 2.665537 CACATGCTCTTCGTTCACTCTC 59.334 50.000 0.00 0.00 0.00 3.20
162 163 2.266554 CATGCTCTTCGTTCACTCTCC 58.733 52.381 0.00 0.00 0.00 3.71
163 164 1.621992 TGCTCTTCGTTCACTCTCCT 58.378 50.000 0.00 0.00 0.00 3.69
164 165 1.542030 TGCTCTTCGTTCACTCTCCTC 59.458 52.381 0.00 0.00 0.00 3.71
165 166 1.135228 GCTCTTCGTTCACTCTCCTCC 60.135 57.143 0.00 0.00 0.00 4.30
166 167 1.131504 CTCTTCGTTCACTCTCCTCCG 59.868 57.143 0.00 0.00 0.00 4.63
167 168 0.882474 CTTCGTTCACTCTCCTCCGT 59.118 55.000 0.00 0.00 0.00 4.69
168 169 2.082231 CTTCGTTCACTCTCCTCCGTA 58.918 52.381 0.00 0.00 0.00 4.02
169 170 1.735386 TCGTTCACTCTCCTCCGTAG 58.265 55.000 0.00 0.00 0.00 3.51
170 171 1.277273 TCGTTCACTCTCCTCCGTAGA 59.723 52.381 0.00 0.00 0.00 2.59
171 172 1.397692 CGTTCACTCTCCTCCGTAGAC 59.602 57.143 0.00 0.00 0.00 2.59
172 173 1.744522 GTTCACTCTCCTCCGTAGACC 59.255 57.143 0.00 0.00 0.00 3.85
173 174 1.287217 TCACTCTCCTCCGTAGACCT 58.713 55.000 0.00 0.00 0.00 3.85
174 175 1.209990 TCACTCTCCTCCGTAGACCTC 59.790 57.143 0.00 0.00 0.00 3.85
175 176 0.178533 ACTCTCCTCCGTAGACCTCG 59.821 60.000 0.00 0.00 0.00 4.63
177 178 1.224039 CTCCTCCGTAGACCTCGGT 59.776 63.158 4.36 0.00 46.86 4.69
178 179 0.467384 CTCCTCCGTAGACCTCGGTA 59.533 60.000 4.36 0.00 46.86 4.02
179 180 0.467384 TCCTCCGTAGACCTCGGTAG 59.533 60.000 4.36 1.73 46.86 3.18
180 181 1.165284 CCTCCGTAGACCTCGGTAGC 61.165 65.000 4.36 0.00 46.86 3.58
181 182 1.497223 CTCCGTAGACCTCGGTAGCG 61.497 65.000 8.29 8.29 46.86 4.26
182 183 1.817099 CCGTAGACCTCGGTAGCGT 60.817 63.158 14.79 0.00 42.62 5.07
183 184 1.372087 CCGTAGACCTCGGTAGCGTT 61.372 60.000 14.79 0.00 42.62 4.84
184 185 0.247974 CGTAGACCTCGGTAGCGTTG 60.248 60.000 14.79 9.07 0.00 4.10
185 186 0.807496 GTAGACCTCGGTAGCGTTGT 59.193 55.000 14.79 12.26 0.00 3.32
186 187 1.089920 TAGACCTCGGTAGCGTTGTC 58.910 55.000 22.25 22.25 0.00 3.18
187 188 1.513586 GACCTCGGTAGCGTTGTCG 60.514 63.158 14.79 1.25 40.37 4.35
188 189 2.192608 GACCTCGGTAGCGTTGTCGT 62.193 60.000 14.79 4.42 39.49 4.34
189 190 1.513586 CCTCGGTAGCGTTGTCGTC 60.514 63.158 14.79 0.00 39.49 4.20
190 191 1.862147 CTCGGTAGCGTTGTCGTCG 60.862 63.158 14.79 0.00 39.49 5.12
197 198 4.394078 CGTTGTCGTCGCCTCCGA 62.394 66.667 0.00 0.00 42.01 4.55
198 199 2.049802 GTTGTCGTCGCCTCCGAA 60.050 61.111 0.00 0.00 46.34 4.30
199 200 1.662446 GTTGTCGTCGCCTCCGAAA 60.662 57.895 0.00 0.00 46.34 3.46
200 201 1.662446 TTGTCGTCGCCTCCGAAAC 60.662 57.895 0.00 0.00 46.34 2.78
201 202 2.808321 GTCGTCGCCTCCGAAACC 60.808 66.667 0.00 0.00 46.34 3.27
202 203 4.060038 TCGTCGCCTCCGAAACCC 62.060 66.667 0.00 0.00 46.34 4.11
203 204 4.065281 CGTCGCCTCCGAAACCCT 62.065 66.667 0.00 0.00 46.34 4.34
204 205 2.125633 GTCGCCTCCGAAACCCTC 60.126 66.667 0.00 0.00 46.34 4.30
205 206 2.602267 TCGCCTCCGAAACCCTCA 60.602 61.111 0.00 0.00 41.17 3.86
206 207 1.987855 TCGCCTCCGAAACCCTCAT 60.988 57.895 0.00 0.00 41.17 2.90
207 208 1.521681 CGCCTCCGAAACCCTCATC 60.522 63.158 0.00 0.00 36.29 2.92
208 209 1.521681 GCCTCCGAAACCCTCATCG 60.522 63.158 0.00 0.00 38.74 3.84
209 210 1.521681 CCTCCGAAACCCTCATCGC 60.522 63.158 0.00 0.00 37.73 4.58
210 211 1.218047 CTCCGAAACCCTCATCGCA 59.782 57.895 0.00 0.00 37.73 5.10
211 212 0.807667 CTCCGAAACCCTCATCGCAG 60.808 60.000 0.00 0.00 37.73 5.18
212 213 2.464459 CCGAAACCCTCATCGCAGC 61.464 63.158 0.00 0.00 37.73 5.25
213 214 2.464459 CGAAACCCTCATCGCAGCC 61.464 63.158 0.00 0.00 31.71 4.85
214 215 2.436646 AAACCCTCATCGCAGCCG 60.437 61.111 0.00 0.00 0.00 5.52
547 548 3.112709 GTTCAGACCCGCGACAGC 61.113 66.667 8.23 0.00 40.74 4.40
584 585 3.250762 GCATATGCTTCACGGAAATAGCA 59.749 43.478 20.64 0.00 46.47 3.49
586 587 2.760634 TGCTTCACGGAAATAGCAGA 57.239 45.000 0.00 0.00 38.61 4.26
652 657 4.972751 AGCTCTAGATTTCCTTCATCCC 57.027 45.455 0.00 0.00 0.00 3.85
664 669 2.484417 CCTTCATCCCGTTCTCCATGAG 60.484 54.545 0.00 0.00 0.00 2.90
722 732 7.328737 TCCAACTAATTAACCTCAGTTAGCTC 58.671 38.462 0.00 0.00 39.58 4.09
768 2128 3.900941 ACATTTTCTTAGCGCTGGTTTG 58.099 40.909 22.90 10.69 0.00 2.93
822 2182 3.068560 GCACCGTCTGTGGTATTTACAA 58.931 45.455 0.00 0.00 45.55 2.41
1041 2416 3.056107 TCACTACCGATCCTTGTTTCAGG 60.056 47.826 0.00 0.00 34.86 3.86
1218 2593 0.877071 CATGCTTCCCACAGTGTGTC 59.123 55.000 21.48 6.21 0.00 3.67
1235 2610 3.251571 GTGTCGAGTGGATCCTACAAAC 58.748 50.000 14.23 1.77 0.00 2.93
1242 2617 1.707989 TGGATCCTACAAACCCAGCAA 59.292 47.619 14.23 0.00 0.00 3.91
1348 2723 3.181434 ACTTAAGAGGTGGAATGTTGGCA 60.181 43.478 10.09 0.00 0.00 4.92
1395 2796 9.768662 ATGAAGCAAAGATGAACTAACATTTTT 57.231 25.926 0.00 0.00 35.82 1.94
1396 2797 9.033481 TGAAGCAAAGATGAACTAACATTTTTG 57.967 29.630 15.37 15.37 46.00 2.44
1397 2798 8.947055 AAGCAAAGATGAACTAACATTTTTGT 57.053 26.923 18.50 8.77 45.52 2.83
1407 2808 8.920665 TGAACTAACATTTTTGTTTGTCTTGTG 58.079 29.630 6.44 0.00 36.91 3.33
1606 3011 2.287547 CCGTTGGACAAACTGATGTTGG 60.288 50.000 0.00 0.00 36.56 3.77
1676 3090 2.758009 AGCATGAAAATTGTGGTGTGC 58.242 42.857 0.00 0.00 0.00 4.57
1733 3147 6.914259 AGCTGATTTCTAAAAGTTAGGTTGC 58.086 36.000 0.00 0.00 0.00 4.17
1741 3155 4.717279 AAAAGTTAGGTTGCTGGGAGTA 57.283 40.909 0.00 0.00 0.00 2.59
1866 3588 8.951243 AGATTTCTAAGAACCATTACTTGAAGC 58.049 33.333 0.00 0.00 0.00 3.86
1930 3657 1.597742 TTGGCAGTCAGAAGTTGAGC 58.402 50.000 0.00 0.00 36.21 4.26
2053 3783 1.176527 GCTTATGTTGCTGAAGGGCA 58.823 50.000 0.00 0.00 40.74 5.36
2120 3850 4.003648 AGAATGGATCGTTGTTCAACTCC 58.996 43.478 12.74 13.17 0.00 3.85
2256 3990 5.826643 TGTCAGGAATTTGTAAGGGCTTAT 58.173 37.500 0.00 0.00 0.00 1.73
2267 4002 5.865085 TGTAAGGGCTTATATTGTGGCTAG 58.135 41.667 0.00 0.00 0.00 3.42
2472 4273 5.300969 TCATAGCTTGTGAACTTCATTGC 57.699 39.130 0.00 0.90 0.00 3.56
2481 4282 4.082625 TGTGAACTTCATTGCATCCACATC 60.083 41.667 0.00 0.00 0.00 3.06
2600 4402 0.693049 CAGGTACTTCCTTGGGCAGT 59.307 55.000 0.00 0.00 45.67 4.40
2782 4610 1.374758 GGCTTCGGAGGTCAGTGTG 60.375 63.158 0.00 0.00 0.00 3.82
2801 4629 7.879677 TCAGTGTGTCAGAAAATGAATGTATCT 59.120 33.333 0.00 0.00 40.43 1.98
2942 4773 2.200373 TGGTCCTAGCTTTTCTTGGC 57.800 50.000 0.00 0.00 37.57 4.52
3030 4868 3.369471 CCACAATGGAACGTCTAGACCAT 60.369 47.826 17.23 11.59 40.96 3.55
3771 7627 2.225019 CAGTGGCTTCTGCAGTACAAAG 59.775 50.000 14.67 10.93 41.91 2.77
4060 7924 7.333174 TGCGTAGTCAATGATCAAGAATACAAA 59.667 33.333 25.37 16.26 33.77 2.83
4175 8040 0.247419 GACGCACATCACATTCGCAG 60.247 55.000 0.00 0.00 0.00 5.18
4319 8218 2.620585 TGAGATAGAGACACCATCGCAG 59.379 50.000 0.00 0.00 0.00 5.18
4464 8571 1.281899 GGTAGAAGACGTGCTGATGC 58.718 55.000 0.00 0.00 40.20 3.91
4492 8610 6.620877 TCCCAGAAGCTAGAATTGAACTAA 57.379 37.500 0.00 0.00 0.00 2.24
4548 8666 9.118367 TGATAATATAGAGAGTACTCCCTCTGT 57.882 37.037 19.38 15.91 41.85 3.41
4551 8669 3.937778 AGAGAGTACTCCCTCTGTACC 57.062 52.381 19.38 0.00 41.85 3.34
4552 8670 3.191273 AGAGAGTACTCCCTCTGTACCA 58.809 50.000 19.38 0.00 41.85 3.25
4553 8671 3.054213 AGAGAGTACTCCCTCTGTACCAC 60.054 52.174 19.38 0.00 41.85 4.16
4554 8672 2.648304 AGAGTACTCCCTCTGTACCACA 59.352 50.000 19.38 0.00 40.30 4.17
4555 8673 3.075582 AGAGTACTCCCTCTGTACCACAA 59.924 47.826 19.38 0.00 40.30 3.33
4556 8674 4.024670 GAGTACTCCCTCTGTACCACAAT 58.975 47.826 12.13 0.00 40.61 2.71
4557 8675 5.044328 AGAGTACTCCCTCTGTACCACAATA 60.044 44.000 19.38 0.00 40.30 1.90
4558 8676 4.954826 AGTACTCCCTCTGTACCACAATAC 59.045 45.833 0.00 0.00 40.61 1.89
4559 8677 4.062490 ACTCCCTCTGTACCACAATACT 57.938 45.455 0.00 0.00 0.00 2.12
4560 8678 4.426704 ACTCCCTCTGTACCACAATACTT 58.573 43.478 0.00 0.00 0.00 2.24
4561 8679 4.223032 ACTCCCTCTGTACCACAATACTTG 59.777 45.833 0.00 0.00 0.00 3.16
4562 8680 4.164981 TCCCTCTGTACCACAATACTTGT 58.835 43.478 0.00 0.00 46.75 3.16
4563 8681 4.222145 TCCCTCTGTACCACAATACTTGTC 59.778 45.833 0.00 0.00 43.23 3.18
4564 8682 4.174009 CCTCTGTACCACAATACTTGTCG 58.826 47.826 0.00 0.00 43.23 4.35
4565 8683 3.581755 TCTGTACCACAATACTTGTCGC 58.418 45.455 0.00 0.00 43.23 5.19
4566 8684 3.257375 TCTGTACCACAATACTTGTCGCT 59.743 43.478 0.00 0.00 43.23 4.93
4567 8685 3.322369 TGTACCACAATACTTGTCGCTG 58.678 45.455 0.00 0.00 43.23 5.18
4568 8686 1.808411 ACCACAATACTTGTCGCTGG 58.192 50.000 0.00 0.00 43.23 4.85
4569 8687 1.086696 CCACAATACTTGTCGCTGGG 58.913 55.000 0.00 0.00 43.23 4.45
4570 8688 1.086696 CACAATACTTGTCGCTGGGG 58.913 55.000 0.00 0.00 43.23 4.96
4571 8689 0.035439 ACAATACTTGTCGCTGGGGG 60.035 55.000 0.00 0.00 40.56 5.40
4572 8690 0.251916 CAATACTTGTCGCTGGGGGA 59.748 55.000 0.00 0.00 0.00 4.81
4573 8691 0.988832 AATACTTGTCGCTGGGGGAA 59.011 50.000 0.00 0.00 0.00 3.97
4574 8692 0.252197 ATACTTGTCGCTGGGGGAAC 59.748 55.000 0.00 0.00 0.00 3.62
4594 8712 4.838904 ACCTATACTGGTTTCTCCCAAC 57.161 45.455 0.00 0.00 36.89 3.77
4595 8713 3.197116 ACCTATACTGGTTTCTCCCAACG 59.803 47.826 0.00 0.00 36.89 4.10
4596 8714 3.449737 CCTATACTGGTTTCTCCCAACGA 59.550 47.826 0.00 0.00 33.07 3.85
4597 8715 2.825861 TACTGGTTTCTCCCAACGAC 57.174 50.000 0.00 0.00 33.07 4.34
4598 8716 0.249741 ACTGGTTTCTCCCAACGACG 60.250 55.000 0.00 0.00 33.07 5.12
4599 8717 0.949105 CTGGTTTCTCCCAACGACGG 60.949 60.000 0.00 0.00 33.07 4.79
4608 8726 0.806241 CCCAACGACGGGTATTTTGG 59.194 55.000 0.00 2.65 41.83 3.28
4609 8727 1.525941 CCAACGACGGGTATTTTGGT 58.474 50.000 0.00 0.00 33.39 3.67
4610 8728 2.614987 CCCAACGACGGGTATTTTGGTA 60.615 50.000 10.61 0.00 41.83 3.25
4611 8729 2.416202 CCAACGACGGGTATTTTGGTAC 59.584 50.000 0.00 0.00 33.39 3.34
4612 8730 3.065655 CAACGACGGGTATTTTGGTACA 58.934 45.455 0.00 0.00 0.00 2.90
4613 8731 2.963432 ACGACGGGTATTTTGGTACAG 58.037 47.619 0.00 0.00 42.39 2.74
4614 8732 2.562298 ACGACGGGTATTTTGGTACAGA 59.438 45.455 0.00 0.00 42.39 3.41
4615 8733 3.184541 CGACGGGTATTTTGGTACAGAG 58.815 50.000 0.00 0.00 42.39 3.35
4616 8734 3.528532 GACGGGTATTTTGGTACAGAGG 58.471 50.000 0.00 0.00 42.39 3.69
4661 8781 5.748670 TTGCCATGTAGTTTAGACCTGTA 57.251 39.130 0.00 0.00 0.00 2.74
4662 8782 5.748670 TGCCATGTAGTTTAGACCTGTAA 57.251 39.130 0.00 0.00 0.00 2.41
4663 8783 5.730550 TGCCATGTAGTTTAGACCTGTAAG 58.269 41.667 0.00 0.00 0.00 2.34
4664 8784 4.571176 GCCATGTAGTTTAGACCTGTAAGC 59.429 45.833 0.00 0.00 0.00 3.09
4665 8785 5.627040 GCCATGTAGTTTAGACCTGTAAGCT 60.627 44.000 0.00 0.00 0.00 3.74
4666 8786 5.812642 CCATGTAGTTTAGACCTGTAAGCTG 59.187 44.000 0.00 0.00 0.00 4.24
4667 8787 6.398918 CATGTAGTTTAGACCTGTAAGCTGT 58.601 40.000 0.00 0.00 0.00 4.40
4668 8788 7.363530 CCATGTAGTTTAGACCTGTAAGCTGTA 60.364 40.741 0.00 0.00 0.00 2.74
4669 8789 7.528996 TGTAGTTTAGACCTGTAAGCTGTAA 57.471 36.000 0.00 0.00 0.00 2.41
4670 8790 8.130671 TGTAGTTTAGACCTGTAAGCTGTAAT 57.869 34.615 0.00 0.00 0.00 1.89
4671 8791 8.591072 TGTAGTTTAGACCTGTAAGCTGTAATT 58.409 33.333 0.00 0.00 0.00 1.40
4672 8792 9.433153 GTAGTTTAGACCTGTAAGCTGTAATTT 57.567 33.333 0.00 0.00 0.00 1.82
4673 8793 8.324163 AGTTTAGACCTGTAAGCTGTAATTTG 57.676 34.615 0.00 0.00 0.00 2.32
4674 8794 7.390718 AGTTTAGACCTGTAAGCTGTAATTTGG 59.609 37.037 0.00 0.00 0.00 3.28
4675 8795 5.242795 AGACCTGTAAGCTGTAATTTGGT 57.757 39.130 0.00 0.00 0.00 3.67
4676 8796 5.631119 AGACCTGTAAGCTGTAATTTGGTT 58.369 37.500 0.00 0.00 0.00 3.67
4677 8797 5.705905 AGACCTGTAAGCTGTAATTTGGTTC 59.294 40.000 0.00 0.00 0.00 3.62
4678 8798 5.381757 ACCTGTAAGCTGTAATTTGGTTCA 58.618 37.500 0.00 0.00 0.00 3.18
4679 8799 6.010219 ACCTGTAAGCTGTAATTTGGTTCAT 58.990 36.000 0.00 0.00 0.00 2.57
4680 8800 6.071952 ACCTGTAAGCTGTAATTTGGTTCATG 60.072 38.462 0.00 0.00 0.00 3.07
4681 8801 6.150976 CCTGTAAGCTGTAATTTGGTTCATGA 59.849 38.462 0.00 0.00 0.00 3.07
4682 8802 7.148018 CCTGTAAGCTGTAATTTGGTTCATGAT 60.148 37.037 0.00 0.00 0.00 2.45
4683 8803 7.537715 TGTAAGCTGTAATTTGGTTCATGATG 58.462 34.615 0.00 0.00 0.00 3.07
4684 8804 6.839124 AAGCTGTAATTTGGTTCATGATGA 57.161 33.333 0.00 0.00 0.00 2.92
4685 8805 7.414222 AAGCTGTAATTTGGTTCATGATGAT 57.586 32.000 0.00 0.00 0.00 2.45
4686 8806 6.802608 AGCTGTAATTTGGTTCATGATGATG 58.197 36.000 0.00 0.00 0.00 3.07
4687 8807 5.461078 GCTGTAATTTGGTTCATGATGATGC 59.539 40.000 0.00 0.00 0.00 3.91
4688 8808 6.527057 TGTAATTTGGTTCATGATGATGCA 57.473 33.333 0.00 0.00 0.00 3.96
4689 8809 6.566141 TGTAATTTGGTTCATGATGATGCAG 58.434 36.000 0.00 0.00 0.00 4.41
4690 8810 5.925506 AATTTGGTTCATGATGATGCAGA 57.074 34.783 0.00 0.00 0.00 4.26
4691 8811 4.976224 TTTGGTTCATGATGATGCAGAG 57.024 40.909 0.00 0.00 0.00 3.35
4692 8812 2.927028 TGGTTCATGATGATGCAGAGG 58.073 47.619 0.00 0.00 0.00 3.69
4693 8813 1.607628 GGTTCATGATGATGCAGAGGC 59.392 52.381 0.00 0.00 41.68 4.70
4694 8814 1.607628 GTTCATGATGATGCAGAGGCC 59.392 52.381 0.00 0.00 40.13 5.19
4695 8815 0.841289 TCATGATGATGCAGAGGCCA 59.159 50.000 5.01 0.00 40.13 5.36
4696 8816 1.202770 TCATGATGATGCAGAGGCCAG 60.203 52.381 5.01 0.00 40.13 4.85
4697 8817 0.110678 ATGATGATGCAGAGGCCAGG 59.889 55.000 5.01 0.00 40.13 4.45
4698 8818 1.228184 GATGATGCAGAGGCCAGGG 60.228 63.158 5.01 0.00 40.13 4.45
4699 8819 1.992519 GATGATGCAGAGGCCAGGGT 61.993 60.000 5.01 0.00 40.13 4.34
4700 8820 1.992519 ATGATGCAGAGGCCAGGGTC 61.993 60.000 5.01 0.00 40.13 4.46
4701 8821 2.285969 ATGCAGAGGCCAGGGTCT 60.286 61.111 5.01 0.00 40.13 3.85
4702 8822 1.919600 GATGCAGAGGCCAGGGTCTT 61.920 60.000 5.01 0.00 40.13 3.01
4703 8823 0.621571 ATGCAGAGGCCAGGGTCTTA 60.622 55.000 5.01 0.00 40.13 2.10
4704 8824 0.840288 TGCAGAGGCCAGGGTCTTAA 60.840 55.000 5.01 0.00 40.13 1.85
4705 8825 0.393132 GCAGAGGCCAGGGTCTTAAC 60.393 60.000 5.01 0.00 0.00 2.01
4706 8826 0.253327 CAGAGGCCAGGGTCTTAACC 59.747 60.000 5.01 0.00 45.65 2.85
4814 8935 7.239763 TGGATTATGTCTCACTACTTGTTCA 57.760 36.000 0.00 0.00 0.00 3.18
4859 8980 4.879104 TTGAAACGGCTAAAGAAACGAA 57.121 36.364 0.00 0.00 0.00 3.85
5055 9177 1.284657 CAGTTATCAGCGAGCCACTG 58.715 55.000 0.00 0.00 36.44 3.66
5070 9192 1.340405 CCACTGAAACCCCAGATCAGG 60.340 57.143 0.00 0.00 43.79 3.86
5081 9203 0.533755 CAGATCAGGAACCCATCGCC 60.534 60.000 0.00 0.00 0.00 5.54
5107 9229 5.295045 GCCATGCAATCAGAAAAATTAAGGG 59.705 40.000 0.00 0.00 0.00 3.95
5134 9256 4.320788 CCAATCAGGTGCTCTCTTGAAAAC 60.321 45.833 0.00 0.00 0.00 2.43
5175 9300 0.032267 GGATACAGCCGGCAGTAGAC 59.968 60.000 31.45 26.05 0.00 2.59
5199 9324 0.889994 ACTCCGTGTATGTGGCGTAA 59.110 50.000 0.00 0.00 0.00 3.18
5219 9344 7.681125 CGTAAGCAGGAACAAATACTACTAG 57.319 40.000 0.00 0.00 0.00 2.57
5220 9345 7.256286 CGTAAGCAGGAACAAATACTACTAGT 58.744 38.462 0.00 0.00 0.00 2.57
5221 9346 7.220300 CGTAAGCAGGAACAAATACTACTAGTG 59.780 40.741 5.39 0.00 0.00 2.74
5244 9404 6.033513 GTGCTACTTATTTGATTTTTGACGGC 59.966 38.462 0.00 0.00 0.00 5.68
5281 9443 2.120232 CTTCGTATCTGCTGTAAGGCG 58.880 52.381 0.00 0.00 34.52 5.52
5297 9459 0.867086 GGCGCGTGTGTAAAACCTTA 59.133 50.000 8.43 0.00 0.00 2.69
5298 9460 1.398832 GGCGCGTGTGTAAAACCTTAC 60.399 52.381 8.43 0.00 38.34 2.34
5299 9461 1.398832 GCGCGTGTGTAAAACCTTACC 60.399 52.381 8.43 0.00 37.24 2.85
5301 9463 2.497138 GCGTGTGTAAAACCTTACCCT 58.503 47.619 0.00 0.00 37.24 4.34
5302 9464 2.224784 GCGTGTGTAAAACCTTACCCTG 59.775 50.000 0.00 0.00 37.24 4.45
5303 9465 3.469739 CGTGTGTAAAACCTTACCCTGT 58.530 45.455 0.00 0.00 37.24 4.00
5304 9466 3.495753 CGTGTGTAAAACCTTACCCTGTC 59.504 47.826 0.00 0.00 37.24 3.51
5305 9467 4.453751 GTGTGTAAAACCTTACCCTGTCA 58.546 43.478 0.00 0.00 37.24 3.58
5306 9468 4.883006 GTGTGTAAAACCTTACCCTGTCAA 59.117 41.667 0.00 0.00 37.24 3.18
5338 9616 3.271729 TCGTGTTCTTGGCTGTTTGTAA 58.728 40.909 0.00 0.00 0.00 2.41
5404 9682 3.548745 TGTCCTGTCAATATGGAGCTG 57.451 47.619 0.00 0.00 0.00 4.24
5425 9703 3.279434 GTTTCACTGGGTTCTTGTGTCT 58.721 45.455 0.00 0.00 33.82 3.41
5426 9704 4.080807 TGTTTCACTGGGTTCTTGTGTCTA 60.081 41.667 0.00 0.00 33.82 2.59
5427 9705 4.974645 TTCACTGGGTTCTTGTGTCTAT 57.025 40.909 0.00 0.00 33.82 1.98
5428 9706 6.183361 TGTTTCACTGGGTTCTTGTGTCTATA 60.183 38.462 0.00 0.00 33.82 1.31
5459 9737 8.622157 TCCTTCTCAATCTTAGTTATCACGTAG 58.378 37.037 0.00 0.00 0.00 3.51
5463 9741 9.610705 TCTCAATCTTAGTTATCACGTAGTACT 57.389 33.333 0.00 0.00 41.61 2.73
5504 9787 4.911053 AGAGCGTTTAGATGACTACTTCG 58.089 43.478 0.00 0.00 0.00 3.79
5517 9800 4.142534 TGACTACTTCGGTGATCTAAACGG 60.143 45.833 0.00 0.00 0.00 4.44
5552 9847 5.587388 TTACGGAGGGAGTACTATGTTTG 57.413 43.478 0.00 0.00 0.00 2.93
5602 9897 5.933286 TGGAACAAAGAGTCGAGCTCGTG 62.933 52.174 33.33 24.82 42.46 4.35
5672 9967 3.124636 CGTGAACACCAAGTTAGGCATAC 59.875 47.826 0.00 0.00 41.51 2.39
5675 9970 4.941263 TGAACACCAAGTTAGGCATACATC 59.059 41.667 0.00 0.00 41.51 3.06
5676 9971 4.568072 ACACCAAGTTAGGCATACATCA 57.432 40.909 0.00 0.00 0.00 3.07
5863 10169 3.954904 TCAGCTACTCCTTACTAAGCCTG 59.045 47.826 0.00 0.00 33.63 4.85
5872 10178 2.852495 TACTAAGCCTGCGGTGCTGC 62.852 60.000 8.98 0.00 39.48 5.25
5949 10303 1.717728 GTTGAACGCGCAACTGTCG 60.718 57.895 18.54 0.00 43.60 4.35
5978 10332 3.677148 GCAGAGATCATGACGGACAGAAA 60.677 47.826 0.00 0.00 0.00 2.52
6014 10368 7.937942 AGAAATCAAGATCGATCATGAGGATTT 59.062 33.333 30.14 27.43 37.85 2.17
6022 10376 4.939439 TCGATCATGAGGATTTATGCATGG 59.061 41.667 10.16 0.00 38.82 3.66
6023 10377 4.438336 CGATCATGAGGATTTATGCATGGC 60.438 45.833 10.16 0.00 38.82 4.40
6024 10378 3.834938 TCATGAGGATTTATGCATGGCA 58.165 40.909 10.16 0.00 44.86 4.92
6025 10379 3.824443 TCATGAGGATTTATGCATGGCAG 59.176 43.478 10.16 0.00 43.65 4.85
6026 10380 3.301794 TGAGGATTTATGCATGGCAGT 57.698 42.857 10.16 0.00 43.65 4.40
6027 10381 2.953648 TGAGGATTTATGCATGGCAGTG 59.046 45.455 10.16 0.00 43.65 3.66
6039 10393 2.726274 GCAGTGGCATGGCATAGC 59.274 61.111 26.07 25.58 40.72 2.97
6068 10459 0.250234 TGGATGGAGCTTTCGGTCAG 59.750 55.000 0.00 0.00 39.38 3.51
6082 10473 0.966920 GGTCAGTCGAGGTTTGAGGA 59.033 55.000 0.00 0.00 0.00 3.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.115490 AGAACCCATATTCTTTGACTCTTTTG 57.885 34.615 0.00 0.00 35.29 2.44
1 2 8.712228 AAGAACCCATATTCTTTGACTCTTTT 57.288 30.769 0.00 0.00 44.74 2.27
32 33 9.946165 GCTAAACTTTCAACTAGTGTGTATTTT 57.054 29.630 0.00 0.00 0.00 1.82
33 34 9.338622 AGCTAAACTTTCAACTAGTGTGTATTT 57.661 29.630 0.00 0.00 0.00 1.40
34 35 8.904099 AGCTAAACTTTCAACTAGTGTGTATT 57.096 30.769 0.00 0.00 0.00 1.89
35 36 8.368668 AGAGCTAAACTTTCAACTAGTGTGTAT 58.631 33.333 0.00 0.00 0.00 2.29
36 37 7.723324 AGAGCTAAACTTTCAACTAGTGTGTA 58.277 34.615 0.00 0.00 0.00 2.90
37 38 6.583562 AGAGCTAAACTTTCAACTAGTGTGT 58.416 36.000 0.00 0.00 0.00 3.72
38 39 7.348201 CAAGAGCTAAACTTTCAACTAGTGTG 58.652 38.462 0.00 0.00 0.00 3.82
39 40 6.017852 GCAAGAGCTAAACTTTCAACTAGTGT 60.018 38.462 0.00 0.00 37.91 3.55
40 41 6.017934 TGCAAGAGCTAAACTTTCAACTAGTG 60.018 38.462 0.00 0.00 42.74 2.74
41 42 6.055588 TGCAAGAGCTAAACTTTCAACTAGT 58.944 36.000 0.00 0.00 42.74 2.57
42 43 6.545504 TGCAAGAGCTAAACTTTCAACTAG 57.454 37.500 0.00 0.00 42.74 2.57
43 44 6.017109 CCTTGCAAGAGCTAAACTTTCAACTA 60.017 38.462 28.05 0.00 42.74 2.24
44 45 5.221126 CCTTGCAAGAGCTAAACTTTCAACT 60.221 40.000 28.05 0.00 42.74 3.16
45 46 4.978580 CCTTGCAAGAGCTAAACTTTCAAC 59.021 41.667 28.05 0.00 42.74 3.18
46 47 4.644685 ACCTTGCAAGAGCTAAACTTTCAA 59.355 37.500 28.05 0.00 42.74 2.69
47 48 4.207165 ACCTTGCAAGAGCTAAACTTTCA 58.793 39.130 28.05 0.00 42.74 2.69
48 49 4.837896 ACCTTGCAAGAGCTAAACTTTC 57.162 40.909 28.05 0.00 42.74 2.62
49 50 5.278512 GCTAACCTTGCAAGAGCTAAACTTT 60.279 40.000 28.05 8.51 42.74 2.66
50 51 4.216472 GCTAACCTTGCAAGAGCTAAACTT 59.784 41.667 28.05 9.12 42.74 2.66
51 52 3.753797 GCTAACCTTGCAAGAGCTAAACT 59.246 43.478 28.05 5.14 42.74 2.66
52 53 3.753797 AGCTAACCTTGCAAGAGCTAAAC 59.246 43.478 29.69 13.97 41.60 2.01
53 54 4.003648 GAGCTAACCTTGCAAGAGCTAAA 58.996 43.478 30.39 10.92 43.39 1.85
54 55 3.261897 AGAGCTAACCTTGCAAGAGCTAA 59.738 43.478 30.39 12.07 43.39 3.09
55 56 2.834549 AGAGCTAACCTTGCAAGAGCTA 59.165 45.455 30.39 17.19 43.39 3.32
56 57 1.627834 AGAGCTAACCTTGCAAGAGCT 59.372 47.619 30.63 30.63 45.94 4.09
57 58 2.106477 AGAGCTAACCTTGCAAGAGC 57.894 50.000 28.05 25.73 42.57 4.09
64 65 4.697352 AGTACATTGCAAGAGCTAACCTTG 59.303 41.667 4.94 8.85 42.77 3.61
65 66 4.911390 AGTACATTGCAAGAGCTAACCTT 58.089 39.130 4.94 0.00 42.74 3.50
66 67 4.559862 AGTACATTGCAAGAGCTAACCT 57.440 40.909 4.94 0.00 42.74 3.50
67 68 6.927294 AATAGTACATTGCAAGAGCTAACC 57.073 37.500 4.94 0.00 42.74 2.85
88 89 8.730680 ACACACGCTGATCTTTCTTTAATAAAT 58.269 29.630 0.00 0.00 0.00 1.40
89 90 8.094798 ACACACGCTGATCTTTCTTTAATAAA 57.905 30.769 0.00 0.00 0.00 1.40
90 91 7.667043 ACACACGCTGATCTTTCTTTAATAA 57.333 32.000 0.00 0.00 0.00 1.40
91 92 7.667043 AACACACGCTGATCTTTCTTTAATA 57.333 32.000 0.00 0.00 0.00 0.98
92 93 6.560253 AACACACGCTGATCTTTCTTTAAT 57.440 33.333 0.00 0.00 0.00 1.40
93 94 6.371809 AAACACACGCTGATCTTTCTTTAA 57.628 33.333 0.00 0.00 0.00 1.52
94 95 6.037720 TGAAAACACACGCTGATCTTTCTTTA 59.962 34.615 0.00 0.00 0.00 1.85
95 96 4.900635 AAACACACGCTGATCTTTCTTT 57.099 36.364 0.00 0.00 0.00 2.52
96 97 4.335315 TGAAAACACACGCTGATCTTTCTT 59.665 37.500 0.00 0.00 0.00 2.52
97 98 3.876914 TGAAAACACACGCTGATCTTTCT 59.123 39.130 0.00 0.00 0.00 2.52
98 99 3.968724 GTGAAAACACACGCTGATCTTTC 59.031 43.478 0.00 0.00 0.00 2.62
99 100 3.952535 GTGAAAACACACGCTGATCTTT 58.047 40.909 0.00 0.00 0.00 2.52
100 101 3.609103 GTGAAAACACACGCTGATCTT 57.391 42.857 0.00 0.00 0.00 2.40
109 110 3.717404 CGAAACTTAGCGTGAAAACACAC 59.283 43.478 0.00 0.00 37.42 3.82
110 111 3.617706 TCGAAACTTAGCGTGAAAACACA 59.382 39.130 0.00 0.00 0.00 3.72
111 112 4.186241 TCGAAACTTAGCGTGAAAACAC 57.814 40.909 0.00 0.00 0.00 3.32
112 113 3.302870 GCTCGAAACTTAGCGTGAAAACA 60.303 43.478 0.00 0.00 0.00 2.83
113 114 3.216031 GCTCGAAACTTAGCGTGAAAAC 58.784 45.455 0.00 0.00 0.00 2.43
114 115 2.222445 GGCTCGAAACTTAGCGTGAAAA 59.778 45.455 0.00 0.00 39.71 2.29
115 116 1.796459 GGCTCGAAACTTAGCGTGAAA 59.204 47.619 0.00 0.00 39.71 2.69
116 117 1.269883 TGGCTCGAAACTTAGCGTGAA 60.270 47.619 0.00 0.00 39.71 3.18
117 118 0.315886 TGGCTCGAAACTTAGCGTGA 59.684 50.000 0.00 0.00 39.71 4.35
118 119 0.716108 CTGGCTCGAAACTTAGCGTG 59.284 55.000 0.00 0.00 39.71 5.34
119 120 0.317479 ACTGGCTCGAAACTTAGCGT 59.683 50.000 0.00 0.00 39.71 5.07
120 121 0.992802 GACTGGCTCGAAACTTAGCG 59.007 55.000 0.00 0.00 39.71 4.26
121 122 1.337823 TGGACTGGCTCGAAACTTAGC 60.338 52.381 0.00 0.00 38.03 3.09
122 123 2.288825 TGTGGACTGGCTCGAAACTTAG 60.289 50.000 0.00 0.00 0.00 2.18
123 124 1.689813 TGTGGACTGGCTCGAAACTTA 59.310 47.619 0.00 0.00 0.00 2.24
124 125 0.468226 TGTGGACTGGCTCGAAACTT 59.532 50.000 0.00 0.00 0.00 2.66
125 126 0.687354 ATGTGGACTGGCTCGAAACT 59.313 50.000 0.00 0.00 0.00 2.66
126 127 0.798776 CATGTGGACTGGCTCGAAAC 59.201 55.000 0.00 0.00 0.00 2.78
127 128 0.955428 GCATGTGGACTGGCTCGAAA 60.955 55.000 0.00 0.00 0.00 3.46
128 129 1.375908 GCATGTGGACTGGCTCGAA 60.376 57.895 0.00 0.00 0.00 3.71
129 130 2.230994 GAGCATGTGGACTGGCTCGA 62.231 60.000 0.00 0.00 42.72 4.04
130 131 1.812922 GAGCATGTGGACTGGCTCG 60.813 63.158 0.00 0.00 42.72 5.03
131 132 4.215349 GAGCATGTGGACTGGCTC 57.785 61.111 0.00 0.00 44.97 4.70
132 133 0.035630 GAAGAGCATGTGGACTGGCT 60.036 55.000 0.00 0.00 39.75 4.75
133 134 1.364626 CGAAGAGCATGTGGACTGGC 61.365 60.000 0.00 0.00 0.00 4.85
134 135 0.036952 ACGAAGAGCATGTGGACTGG 60.037 55.000 0.00 0.00 0.00 4.00
135 136 1.728971 GAACGAAGAGCATGTGGACTG 59.271 52.381 0.00 0.00 0.00 3.51
136 137 1.344438 TGAACGAAGAGCATGTGGACT 59.656 47.619 0.00 0.00 0.00 3.85
137 138 1.461127 GTGAACGAAGAGCATGTGGAC 59.539 52.381 0.00 0.00 0.00 4.02
138 139 1.344438 AGTGAACGAAGAGCATGTGGA 59.656 47.619 0.00 0.00 0.00 4.02
139 140 1.728971 GAGTGAACGAAGAGCATGTGG 59.271 52.381 0.00 0.00 0.00 4.17
140 141 2.665537 GAGAGTGAACGAAGAGCATGTG 59.334 50.000 0.00 0.00 0.00 3.21
141 142 2.353208 GGAGAGTGAACGAAGAGCATGT 60.353 50.000 0.00 0.00 0.00 3.21
142 143 2.094286 AGGAGAGTGAACGAAGAGCATG 60.094 50.000 0.00 0.00 0.00 4.06
143 144 2.165437 GAGGAGAGTGAACGAAGAGCAT 59.835 50.000 0.00 0.00 0.00 3.79
144 145 1.542030 GAGGAGAGTGAACGAAGAGCA 59.458 52.381 0.00 0.00 0.00 4.26
145 146 1.135228 GGAGGAGAGTGAACGAAGAGC 60.135 57.143 0.00 0.00 0.00 4.09
146 147 1.131504 CGGAGGAGAGTGAACGAAGAG 59.868 57.143 0.00 0.00 0.00 2.85
147 148 1.166129 CGGAGGAGAGTGAACGAAGA 58.834 55.000 0.00 0.00 0.00 2.87
148 149 0.882474 ACGGAGGAGAGTGAACGAAG 59.118 55.000 0.00 0.00 0.00 3.79
149 150 2.082231 CTACGGAGGAGAGTGAACGAA 58.918 52.381 0.00 0.00 0.00 3.85
150 151 1.277273 TCTACGGAGGAGAGTGAACGA 59.723 52.381 0.00 0.00 0.00 3.85
151 152 1.397692 GTCTACGGAGGAGAGTGAACG 59.602 57.143 0.00 0.00 0.00 3.95
152 153 1.744522 GGTCTACGGAGGAGAGTGAAC 59.255 57.143 0.00 0.00 0.00 3.18
153 154 1.634459 AGGTCTACGGAGGAGAGTGAA 59.366 52.381 0.00 0.00 0.00 3.18
154 155 1.209990 GAGGTCTACGGAGGAGAGTGA 59.790 57.143 0.00 0.00 0.00 3.41
155 156 1.670791 GAGGTCTACGGAGGAGAGTG 58.329 60.000 0.00 0.00 0.00 3.51
156 157 0.178533 CGAGGTCTACGGAGGAGAGT 59.821 60.000 0.00 0.00 0.00 3.24
157 158 2.994990 CGAGGTCTACGGAGGAGAG 58.005 63.158 0.00 0.00 0.00 3.20
165 166 0.247974 CAACGCTACCGAGGTCTACG 60.248 60.000 0.00 4.08 38.29 3.51
166 167 0.807496 ACAACGCTACCGAGGTCTAC 59.193 55.000 0.00 0.00 38.29 2.59
167 168 1.089920 GACAACGCTACCGAGGTCTA 58.910 55.000 0.00 0.00 37.73 2.59
168 169 1.881602 GACAACGCTACCGAGGTCT 59.118 57.895 0.00 0.00 37.73 3.85
169 170 1.513586 CGACAACGCTACCGAGGTC 60.514 63.158 0.00 0.00 37.54 3.85
170 171 2.192608 GACGACAACGCTACCGAGGT 62.193 60.000 0.00 0.00 43.96 3.85
171 172 1.513586 GACGACAACGCTACCGAGG 60.514 63.158 0.00 0.00 43.96 4.63
172 173 1.862147 CGACGACAACGCTACCGAG 60.862 63.158 0.00 0.00 43.96 4.63
173 174 2.174107 CGACGACAACGCTACCGA 59.826 61.111 0.00 0.00 43.96 4.69
180 181 3.884581 TTCGGAGGCGACGACAACG 62.885 63.158 2.19 7.14 40.45 4.10
181 182 1.662446 TTTCGGAGGCGACGACAAC 60.662 57.895 2.19 0.00 40.45 3.32
182 183 1.662446 GTTTCGGAGGCGACGACAA 60.662 57.895 2.19 2.78 40.45 3.18
183 184 2.049802 GTTTCGGAGGCGACGACA 60.050 61.111 2.19 0.00 40.45 4.35
184 185 2.808321 GGTTTCGGAGGCGACGAC 60.808 66.667 0.00 0.00 40.45 4.34
185 186 4.060038 GGGTTTCGGAGGCGACGA 62.060 66.667 0.00 2.54 38.78 4.20
186 187 3.984200 GAGGGTTTCGGAGGCGACG 62.984 68.421 0.00 0.00 0.00 5.12
187 188 2.125633 GAGGGTTTCGGAGGCGAC 60.126 66.667 0.00 0.00 0.00 5.19
188 189 1.956629 GATGAGGGTTTCGGAGGCGA 61.957 60.000 0.00 0.00 0.00 5.54
189 190 1.521681 GATGAGGGTTTCGGAGGCG 60.522 63.158 0.00 0.00 0.00 5.52
190 191 1.521681 CGATGAGGGTTTCGGAGGC 60.522 63.158 0.00 0.00 0.00 4.70
191 192 1.521681 GCGATGAGGGTTTCGGAGG 60.522 63.158 0.00 0.00 35.93 4.30
192 193 0.807667 CTGCGATGAGGGTTTCGGAG 60.808 60.000 0.00 0.00 45.08 4.63
193 194 1.218047 CTGCGATGAGGGTTTCGGA 59.782 57.895 0.00 0.00 35.93 4.55
194 195 2.464459 GCTGCGATGAGGGTTTCGG 61.464 63.158 0.00 0.00 35.93 4.30
195 196 2.464459 GGCTGCGATGAGGGTTTCG 61.464 63.158 0.00 0.00 38.37 3.46
196 197 2.464459 CGGCTGCGATGAGGGTTTC 61.464 63.158 0.00 0.00 0.00 2.78
197 198 2.436646 CGGCTGCGATGAGGGTTT 60.437 61.111 0.00 0.00 0.00 3.27
550 551 2.281070 ATATGCTTCTGGCCGCGG 60.281 61.111 24.05 24.05 40.92 6.46
552 553 2.641559 GCATATGCTTCTGGCCGC 59.358 61.111 20.64 0.00 40.92 6.53
574 575 2.009774 CCACCACTTCTGCTATTTCCG 58.990 52.381 0.00 0.00 0.00 4.30
579 580 2.814805 AATGCCACCACTTCTGCTAT 57.185 45.000 0.00 0.00 0.00 2.97
584 585 3.181450 GCTATCCTAATGCCACCACTTCT 60.181 47.826 0.00 0.00 0.00 2.85
586 587 2.780010 AGCTATCCTAATGCCACCACTT 59.220 45.455 0.00 0.00 0.00 3.16
664 669 4.953940 ATGATTAGACTTGCCTCTCTCC 57.046 45.455 0.00 0.00 0.00 3.71
722 732 9.128107 GTTTGAAGTGTATTTTCATACATGTGG 57.872 33.333 9.11 0.25 45.69 4.17
750 2110 2.032377 CGTCAAACCAGCGCTAAGAAAA 60.032 45.455 10.99 0.00 0.00 2.29
759 2119 0.732571 AATATGGCGTCAAACCAGCG 59.267 50.000 0.00 0.00 41.46 5.18
768 2128 6.480320 ACTCTCAGACATAAAAATATGGCGTC 59.520 38.462 1.38 0.00 40.35 5.19
772 2132 9.258826 CTCTCACTCTCAGACATAAAAATATGG 57.741 37.037 1.38 0.00 0.00 2.74
845 2213 5.476945 GGAAATTGGGACATCACTAGTGTTT 59.523 40.000 21.99 11.64 39.30 2.83
887 2255 8.825745 GGCACATCTCAAAATTGTTTTCTTTTA 58.174 29.630 0.00 0.00 0.00 1.52
892 2260 6.601741 TTGGCACATCTCAAAATTGTTTTC 57.398 33.333 0.00 0.00 39.30 2.29
893 2261 7.282675 TCAATTGGCACATCTCAAAATTGTTTT 59.717 29.630 5.42 0.00 39.30 2.43
894 2262 6.766944 TCAATTGGCACATCTCAAAATTGTTT 59.233 30.769 5.42 0.00 39.30 2.83
895 2263 6.289834 TCAATTGGCACATCTCAAAATTGTT 58.710 32.000 5.42 0.00 39.30 2.83
896 2264 5.856156 TCAATTGGCACATCTCAAAATTGT 58.144 33.333 5.42 0.00 39.30 2.71
897 2265 6.978343 ATCAATTGGCACATCTCAAAATTG 57.022 33.333 5.42 0.00 39.30 2.32
898 2266 8.262227 ACATATCAATTGGCACATCTCAAAATT 58.738 29.630 5.42 0.00 39.30 1.82
899 2267 7.709182 CACATATCAATTGGCACATCTCAAAAT 59.291 33.333 5.42 0.00 39.30 1.82
1041 2416 4.214332 GTGACAAGACCCTCAAACATCTTC 59.786 45.833 0.00 0.00 28.85 2.87
1042 2417 4.137543 GTGACAAGACCCTCAAACATCTT 58.862 43.478 0.00 0.00 31.53 2.40
1218 2593 1.553248 TGGGTTTGTAGGATCCACTCG 59.447 52.381 15.82 0.00 0.00 4.18
1235 2610 1.481871 AGATCCATTGCTTTGCTGGG 58.518 50.000 0.00 0.00 0.00 4.45
1242 2617 1.642762 AGACCCCAAGATCCATTGCTT 59.357 47.619 0.00 0.00 0.00 3.91
1348 2723 3.342926 ACCTCTCTTGATATGCTCCCT 57.657 47.619 0.00 0.00 0.00 4.20
1413 2814 4.941713 AGGCCATTGGTCTGGTAAAAATA 58.058 39.130 9.54 0.00 35.70 1.40
1676 3090 6.234177 AGTGTAAACAGGATCAGAAAGGAAG 58.766 40.000 0.00 0.00 0.00 3.46
1733 3147 7.290110 TCATGTATGATGTAACTACTCCCAG 57.710 40.000 0.00 0.00 0.00 4.45
1782 3197 9.998106 TTAACTTCTACAAGCAGAAAGATAAGT 57.002 29.630 0.00 0.00 34.22 2.24
1866 3588 0.036164 TGACATGTGTCCCCCTTTCG 59.964 55.000 1.15 0.00 44.15 3.46
2053 3783 3.662759 TCCAGTCCAACAAGTTTCCTT 57.337 42.857 0.00 0.00 0.00 3.36
2120 3850 1.302033 AGCAGCAGTTGTCGAAGGG 60.302 57.895 0.00 0.00 0.00 3.95
2267 4002 7.799784 TGCAAAAGTCTATTTCGTTAGGTAAC 58.200 34.615 0.00 0.00 0.00 2.50
2323 4060 6.939132 AGAATCTACCATTGAAAGCTGATG 57.061 37.500 0.00 0.00 0.00 3.07
2381 4118 4.630111 GTCCAGGATGCTCTTTATCTCAG 58.370 47.826 0.00 0.00 31.97 3.35
2472 4273 1.399440 CCAGAAACTGCGATGTGGATG 59.601 52.381 0.00 0.00 0.00 3.51
2481 4282 2.989840 CTCTCTGTAACCAGAAACTGCG 59.010 50.000 0.00 0.00 46.79 5.18
2801 4629 4.891168 TGACCAGTCGCCTATGTTATCTAA 59.109 41.667 0.00 0.00 0.00 2.10
3059 6620 7.129457 TCTGTCTTTAGCATATGAGAACCAT 57.871 36.000 6.97 0.00 39.25 3.55
3069 6630 8.364894 TCTTACAACTGTTCTGTCTTTAGCATA 58.635 33.333 0.00 0.00 0.00 3.14
3179 6751 1.528076 TTGACGCAACATGGCCTGT 60.528 52.632 3.32 2.75 40.84 4.00
3730 7586 2.291465 TGCTGCAAGTTGATTCACTGTC 59.709 45.455 7.16 0.00 35.30 3.51
3771 7627 3.846754 GCTTTTGCACATCACGGC 58.153 55.556 0.00 0.00 46.58 5.68
4442 8549 2.654749 TCAGCACGTCTTCTACCATG 57.345 50.000 0.00 0.00 0.00 3.66
4464 8571 3.557228 ATTCTAGCTTCTGGGAGCAAG 57.443 47.619 3.56 0.00 45.12 4.01
4532 8650 3.281158 GTGGTACAGAGGGAGTACTCTC 58.719 54.545 21.88 18.89 45.71 3.20
4534 8652 3.083122 TGTGGTACAGAGGGAGTACTC 57.917 52.381 14.87 14.87 41.80 2.59
4535 8653 3.537795 TTGTGGTACAGAGGGAGTACT 57.462 47.619 0.00 0.00 41.80 2.73
4536 8654 4.954826 AGTATTGTGGTACAGAGGGAGTAC 59.045 45.833 0.00 0.00 41.80 2.73
4537 8655 5.202746 AGTATTGTGGTACAGAGGGAGTA 57.797 43.478 0.00 0.00 41.80 2.59
4538 8656 4.062490 AGTATTGTGGTACAGAGGGAGT 57.938 45.455 0.00 0.00 41.80 3.85
4539 8657 4.759782 CAAGTATTGTGGTACAGAGGGAG 58.240 47.826 0.00 0.00 42.34 4.30
4540 8658 4.819105 CAAGTATTGTGGTACAGAGGGA 57.181 45.455 0.00 0.00 42.34 4.20
4554 8672 0.988832 TTCCCCCAGCGACAAGTATT 59.011 50.000 0.00 0.00 0.00 1.89
4555 8673 0.252197 GTTCCCCCAGCGACAAGTAT 59.748 55.000 0.00 0.00 0.00 2.12
4556 8674 1.675219 GTTCCCCCAGCGACAAGTA 59.325 57.895 0.00 0.00 0.00 2.24
4557 8675 2.430367 GTTCCCCCAGCGACAAGT 59.570 61.111 0.00 0.00 0.00 3.16
4558 8676 1.550130 TAGGTTCCCCCAGCGACAAG 61.550 60.000 0.00 0.00 34.66 3.16
4559 8677 0.912487 ATAGGTTCCCCCAGCGACAA 60.912 55.000 0.00 0.00 34.66 3.18
4560 8678 0.031917 TATAGGTTCCCCCAGCGACA 60.032 55.000 0.00 0.00 34.66 4.35
4561 8679 0.391966 GTATAGGTTCCCCCAGCGAC 59.608 60.000 0.00 0.00 34.66 5.19
4562 8680 0.263765 AGTATAGGTTCCCCCAGCGA 59.736 55.000 0.00 0.00 34.66 4.93
4563 8681 0.393077 CAGTATAGGTTCCCCCAGCG 59.607 60.000 0.00 0.00 34.66 5.18
4564 8682 0.765510 CCAGTATAGGTTCCCCCAGC 59.234 60.000 0.00 0.00 34.66 4.85
4565 8683 2.191981 ACCAGTATAGGTTCCCCCAG 57.808 55.000 0.00 0.00 39.34 4.45
4573 8691 3.197116 CGTTGGGAGAAACCAGTATAGGT 59.803 47.826 0.00 0.00 45.91 3.08
4574 8692 3.449737 TCGTTGGGAGAAACCAGTATAGG 59.550 47.826 0.00 0.00 42.47 2.57
4575 8693 4.430908 GTCGTTGGGAGAAACCAGTATAG 58.569 47.826 0.00 0.00 42.47 1.31
4576 8694 3.119388 CGTCGTTGGGAGAAACCAGTATA 60.119 47.826 0.00 0.00 42.47 1.47
4577 8695 2.353406 CGTCGTTGGGAGAAACCAGTAT 60.353 50.000 0.00 0.00 42.47 2.12
4578 8696 1.000060 CGTCGTTGGGAGAAACCAGTA 60.000 52.381 0.00 0.00 42.47 2.74
4579 8697 0.249741 CGTCGTTGGGAGAAACCAGT 60.250 55.000 0.00 0.00 42.47 4.00
4580 8698 0.949105 CCGTCGTTGGGAGAAACCAG 60.949 60.000 0.00 0.00 42.47 4.00
4581 8699 1.070105 CCGTCGTTGGGAGAAACCA 59.930 57.895 0.00 0.00 41.20 3.67
4582 8700 3.961729 CCGTCGTTGGGAGAAACC 58.038 61.111 0.00 0.00 38.08 3.27
4590 8708 1.525941 ACCAAAATACCCGTCGTTGG 58.474 50.000 8.13 8.13 43.60 3.77
4591 8709 3.065655 TGTACCAAAATACCCGTCGTTG 58.934 45.455 0.00 0.00 0.00 4.10
4592 8710 3.006752 TCTGTACCAAAATACCCGTCGTT 59.993 43.478 0.00 0.00 0.00 3.85
4593 8711 2.562298 TCTGTACCAAAATACCCGTCGT 59.438 45.455 0.00 0.00 0.00 4.34
4594 8712 3.184541 CTCTGTACCAAAATACCCGTCG 58.815 50.000 0.00 0.00 0.00 5.12
4595 8713 3.528532 CCTCTGTACCAAAATACCCGTC 58.471 50.000 0.00 0.00 0.00 4.79
4596 8714 2.237893 CCCTCTGTACCAAAATACCCGT 59.762 50.000 0.00 0.00 0.00 5.28
4597 8715 2.502538 TCCCTCTGTACCAAAATACCCG 59.497 50.000 0.00 0.00 0.00 5.28
4598 8716 3.522343 ACTCCCTCTGTACCAAAATACCC 59.478 47.826 0.00 0.00 0.00 3.69
4599 8717 4.838904 ACTCCCTCTGTACCAAAATACC 57.161 45.455 0.00 0.00 0.00 2.73
4600 8718 6.541934 ACTACTCCCTCTGTACCAAAATAC 57.458 41.667 0.00 0.00 0.00 1.89
4601 8719 8.849543 ATTACTACTCCCTCTGTACCAAAATA 57.150 34.615 0.00 0.00 0.00 1.40
4602 8720 7.750947 ATTACTACTCCCTCTGTACCAAAAT 57.249 36.000 0.00 0.00 0.00 1.82
4603 8721 7.563724 AATTACTACTCCCTCTGTACCAAAA 57.436 36.000 0.00 0.00 0.00 2.44
4604 8722 7.897565 AGTAATTACTACTCCCTCTGTACCAAA 59.102 37.037 16.60 0.00 35.90 3.28
4605 8723 7.416731 AGTAATTACTACTCCCTCTGTACCAA 58.583 38.462 16.60 0.00 35.90 3.67
4606 8724 6.978261 AGTAATTACTACTCCCTCTGTACCA 58.022 40.000 16.60 0.00 35.90 3.25
4661 8781 6.839124 TCATCATGAACCAAATTACAGCTT 57.161 33.333 0.00 0.00 0.00 3.74
4662 8782 6.682113 GCATCATCATGAACCAAATTACAGCT 60.682 38.462 0.00 0.00 30.57 4.24
4663 8783 5.461078 GCATCATCATGAACCAAATTACAGC 59.539 40.000 0.00 0.00 30.57 4.40
4664 8784 6.566141 TGCATCATCATGAACCAAATTACAG 58.434 36.000 0.00 0.00 30.57 2.74
4665 8785 6.377712 TCTGCATCATCATGAACCAAATTACA 59.622 34.615 0.00 0.00 30.57 2.41
4666 8786 6.798482 TCTGCATCATCATGAACCAAATTAC 58.202 36.000 0.00 0.00 30.57 1.89
4667 8787 6.040054 CCTCTGCATCATCATGAACCAAATTA 59.960 38.462 0.00 0.00 30.57 1.40
4668 8788 5.163447 CCTCTGCATCATCATGAACCAAATT 60.163 40.000 0.00 0.00 30.57 1.82
4669 8789 4.341235 CCTCTGCATCATCATGAACCAAAT 59.659 41.667 0.00 0.00 30.57 2.32
4670 8790 3.697542 CCTCTGCATCATCATGAACCAAA 59.302 43.478 0.00 0.00 30.57 3.28
4671 8791 3.284617 CCTCTGCATCATCATGAACCAA 58.715 45.455 0.00 0.00 30.57 3.67
4672 8792 2.927028 CCTCTGCATCATCATGAACCA 58.073 47.619 0.00 0.00 30.57 3.67
4673 8793 1.607628 GCCTCTGCATCATCATGAACC 59.392 52.381 0.00 0.00 37.47 3.62
4674 8794 1.607628 GGCCTCTGCATCATCATGAAC 59.392 52.381 0.00 0.00 40.13 3.18
4675 8795 1.213430 TGGCCTCTGCATCATCATGAA 59.787 47.619 3.32 0.00 40.13 2.57
4676 8796 0.841289 TGGCCTCTGCATCATCATGA 59.159 50.000 3.32 0.00 40.13 3.07
4677 8797 1.239347 CTGGCCTCTGCATCATCATG 58.761 55.000 3.32 0.00 40.13 3.07
4678 8798 0.110678 CCTGGCCTCTGCATCATCAT 59.889 55.000 3.32 0.00 40.13 2.45
4679 8799 1.530283 CCTGGCCTCTGCATCATCA 59.470 57.895 3.32 0.00 40.13 3.07
4680 8800 1.228184 CCCTGGCCTCTGCATCATC 60.228 63.158 3.32 0.00 40.13 2.92
4681 8801 1.992519 GACCCTGGCCTCTGCATCAT 61.993 60.000 3.32 0.00 40.13 2.45
4682 8802 2.611800 ACCCTGGCCTCTGCATCA 60.612 61.111 3.32 0.00 40.13 3.07
4683 8803 1.919600 AAGACCCTGGCCTCTGCATC 61.920 60.000 3.32 0.00 40.13 3.91
4684 8804 0.621571 TAAGACCCTGGCCTCTGCAT 60.622 55.000 3.32 0.00 40.13 3.96
4685 8805 0.840288 TTAAGACCCTGGCCTCTGCA 60.840 55.000 3.32 0.00 40.13 4.41
4686 8806 0.393132 GTTAAGACCCTGGCCTCTGC 60.393 60.000 3.32 0.00 0.00 4.26
4687 8807 0.253327 GGTTAAGACCCTGGCCTCTG 59.747 60.000 3.32 0.00 40.25 3.35
4688 8808 2.698168 GGTTAAGACCCTGGCCTCT 58.302 57.895 3.32 0.00 40.25 3.69
4717 8837 5.754890 CAGAGCAACCAAATTACAGCTTTTT 59.245 36.000 0.00 0.00 31.61 1.94
4718 8838 5.068987 TCAGAGCAACCAAATTACAGCTTTT 59.931 36.000 0.00 0.00 31.61 2.27
4719 8839 4.584325 TCAGAGCAACCAAATTACAGCTTT 59.416 37.500 0.00 0.00 31.61 3.51
4859 8980 0.892755 TGACGCTATGGACTTCCGTT 59.107 50.000 0.00 0.00 39.43 4.44
5055 9177 1.341089 GGGTTCCTGATCTGGGGTTTC 60.341 57.143 17.73 4.78 0.00 2.78
5070 9192 4.875713 ATGGCCGGCGATGGGTTC 62.876 66.667 24.25 5.55 0.00 3.62
5081 9203 2.367030 TTTTTCTGATTGCATGGCCG 57.633 45.000 0.00 0.00 0.00 6.13
5107 9229 3.064900 AGAGAGCACCTGATTGGAAAC 57.935 47.619 0.00 0.00 39.71 2.78
5199 9324 5.187967 AGCACTAGTAGTATTTGTTCCTGCT 59.812 40.000 1.57 0.77 0.00 4.24
5216 9341 9.478019 CGTCAAAAATCAAATAAGTAGCACTAG 57.522 33.333 0.00 0.00 0.00 2.57
5218 9343 7.305474 CCGTCAAAAATCAAATAAGTAGCACT 58.695 34.615 0.00 0.00 0.00 4.40
5219 9344 6.033513 GCCGTCAAAAATCAAATAAGTAGCAC 59.966 38.462 0.00 0.00 0.00 4.40
5220 9345 6.090129 GCCGTCAAAAATCAAATAAGTAGCA 58.910 36.000 0.00 0.00 0.00 3.49
5221 9346 5.227184 CGCCGTCAAAAATCAAATAAGTAGC 59.773 40.000 0.00 0.00 0.00 3.58
5244 9404 4.957971 ACGAAGCTTAATTCACATCAACG 58.042 39.130 0.00 0.00 0.00 4.10
5281 9443 2.224784 CAGGGTAAGGTTTTACACACGC 59.775 50.000 2.90 0.00 44.11 5.34
5297 9459 1.072159 GCAGCAGAGTTGACAGGGT 59.928 57.895 0.00 0.00 0.00 4.34
5298 9460 0.322277 ATGCAGCAGAGTTGACAGGG 60.322 55.000 0.00 0.00 0.00 4.45
5299 9461 1.085091 GATGCAGCAGAGTTGACAGG 58.915 55.000 0.00 0.00 0.00 4.00
5301 9463 0.033920 ACGATGCAGCAGAGTTGACA 59.966 50.000 1.53 0.00 0.00 3.58
5302 9464 0.441533 CACGATGCAGCAGAGTTGAC 59.558 55.000 1.53 0.00 0.00 3.18
5303 9465 0.033920 ACACGATGCAGCAGAGTTGA 59.966 50.000 1.53 0.00 0.00 3.18
5304 9466 0.870393 AACACGATGCAGCAGAGTTG 59.130 50.000 1.53 0.00 0.00 3.16
5305 9467 1.151668 GAACACGATGCAGCAGAGTT 58.848 50.000 1.53 6.07 0.00 3.01
5306 9468 0.319728 AGAACACGATGCAGCAGAGT 59.680 50.000 1.53 0.00 0.00 3.24
5338 9616 2.386661 CTACCGGAGCACTGACAAAT 57.613 50.000 9.46 0.00 0.00 2.32
5404 9682 3.279434 AGACACAAGAACCCAGTGAAAC 58.721 45.455 0.00 0.00 37.05 2.78
5486 9764 4.978186 TCACCGAAGTAGTCATCTAAACG 58.022 43.478 0.00 0.00 0.00 3.60
5503 9786 7.866393 AGAAATATAAGACCGTTTAGATCACCG 59.134 37.037 0.00 0.00 0.00 4.94
5504 9787 9.543783 AAGAAATATAAGACCGTTTAGATCACC 57.456 33.333 0.00 0.00 0.00 4.02
5517 9800 7.724287 ACTCCCTCCGTAAAGAAATATAAGAC 58.276 38.462 0.00 0.00 0.00 3.01
5552 9847 3.895232 TCCAACTAAGCATCTCCAGAC 57.105 47.619 0.00 0.00 0.00 3.51
5602 9897 2.594541 GGATTCTGTCCGATCACGC 58.405 57.895 0.00 0.00 37.23 5.34
5675 9970 9.705290 ACCAAATTAGTTTAGTTTAAGCCAATG 57.295 29.630 0.00 0.00 0.00 2.82
5676 9971 9.923143 GACCAAATTAGTTTAGTTTAAGCCAAT 57.077 29.630 0.00 0.00 0.00 3.16
5872 10178 0.109781 CCATTTGTTTCGAGGCCACG 60.110 55.000 17.19 17.19 0.00 4.94
5949 10303 2.753296 GTCATGATCTCTGCAGGCTAC 58.247 52.381 15.13 4.51 0.00 3.58
5978 10332 5.104527 TCGATCTTGATTTCTTACCATGGGT 60.105 40.000 18.09 4.30 40.16 4.51
6014 10368 1.110518 CCATGCCACTGCCATGCATA 61.111 55.000 0.00 0.00 43.49 3.14
6022 10376 1.461091 ATGCTATGCCATGCCACTGC 61.461 55.000 0.00 0.00 38.26 4.40
6023 10377 0.313987 CATGCTATGCCATGCCACTG 59.686 55.000 0.00 0.00 36.52 3.66
6024 10378 0.826256 CCATGCTATGCCATGCCACT 60.826 55.000 0.00 0.00 40.92 4.00
6025 10379 0.824595 TCCATGCTATGCCATGCCAC 60.825 55.000 0.00 0.00 40.92 5.01
6026 10380 0.113580 ATCCATGCTATGCCATGCCA 59.886 50.000 0.00 0.00 40.92 4.92
6027 10381 0.530744 CATCCATGCTATGCCATGCC 59.469 55.000 0.00 0.00 40.92 4.40
6037 10391 0.995132 TCCATCCACCCATCCATGCT 60.995 55.000 0.00 0.00 0.00 3.79
6039 10393 0.538977 GCTCCATCCACCCATCCATG 60.539 60.000 0.00 0.00 0.00 3.66
6068 10459 3.938289 AGTAAGTCCTCAAACCTCGAC 57.062 47.619 0.00 0.00 0.00 4.20
6082 10473 0.034896 CACCAGCGACCCAAGTAAGT 59.965 55.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.