Multiple sequence alignment - TraesCS2A01G424900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G424900 chr2A 100.000 3548 0 0 899 4446 678960629 678964176 0.000000e+00 6553.0
1 TraesCS2A01G424900 chr2A 100.000 488 0 0 1 488 678959731 678960218 0.000000e+00 902.0
2 TraesCS2A01G424900 chr2A 87.568 185 22 1 1 185 132704532 132704349 3.480000e-51 213.0
3 TraesCS2A01G424900 chr2A 81.522 184 28 5 4 186 168940732 168940910 3.580000e-31 147.0
4 TraesCS2A01G424900 chr2A 96.875 32 1 0 2000 2031 16374455 16374424 2.000000e-03 54.7
5 TraesCS2A01G424900 chr2A 100.000 28 0 0 2001 2028 606523685 606523712 8.000000e-03 52.8
6 TraesCS2A01G424900 chr2A 100.000 28 0 0 2001 2028 765004987 765004960 8.000000e-03 52.8
7 TraesCS2A01G424900 chr2B 91.883 1774 106 21 2030 3800 637572905 637574643 0.000000e+00 2444.0
8 TraesCS2A01G424900 chr2B 91.129 1116 72 19 900 2006 637571850 637572947 0.000000e+00 1487.0
9 TraesCS2A01G424900 chr2B 83.580 609 41 17 3874 4443 637574776 637575364 2.370000e-142 516.0
10 TraesCS2A01G424900 chr2B 86.420 81 11 0 75 155 59324775 59324855 6.130000e-14 89.8
11 TraesCS2A01G424900 chr2B 92.308 52 4 0 213 264 665533993 665533942 1.720000e-09 75.0
12 TraesCS2A01G424900 chr2D 93.714 1034 57 6 2895 3923 536150692 536151722 0.000000e+00 1543.0
13 TraesCS2A01G424900 chr2D 90.352 1109 77 20 899 2006 536148645 536149724 0.000000e+00 1428.0
14 TraesCS2A01G424900 chr2D 90.523 707 52 10 2172 2866 536149986 536150689 0.000000e+00 920.0
15 TraesCS2A01G424900 chr2D 92.903 465 18 5 1008 1460 5146131 5145670 0.000000e+00 662.0
16 TraesCS2A01G424900 chr2D 87.712 472 47 8 1535 2006 5145662 5145202 1.410000e-149 540.0
17 TraesCS2A01G424900 chr2D 84.115 384 15 21 4096 4446 536151820 536152190 3.320000e-86 329.0
18 TraesCS2A01G424900 chr2D 90.411 146 14 0 2030 2175 536149682 536149827 4.540000e-45 193.0
19 TraesCS2A01G424900 chr2D 81.720 186 28 4 4 185 121293424 121293607 2.770000e-32 150.0
20 TraesCS2A01G424900 chr2D 90.196 102 6 1 3953 4050 536151721 536151822 3.610000e-26 130.0
21 TraesCS2A01G424900 chr2D 91.139 79 7 0 2030 2108 5145244 5145166 1.690000e-19 108.0
22 TraesCS2A01G424900 chr2D 85.333 75 11 0 187 261 74785113 74785187 1.330000e-10 78.7
23 TraesCS2A01G424900 chr6B 87.736 636 65 10 1371 2005 404363241 404362618 0.000000e+00 730.0
24 TraesCS2A01G424900 chr6B 88.060 335 30 3 2030 2364 404362659 404362335 5.390000e-104 388.0
25 TraesCS2A01G424900 chr3B 87.107 636 69 10 1370 2005 158153485 158154107 0.000000e+00 708.0
26 TraesCS2A01G424900 chr3B 86.792 636 73 8 1370 2005 46803080 46802456 0.000000e+00 699.0
27 TraesCS2A01G424900 chr3B 85.373 335 38 4 2030 2364 46802497 46802174 1.980000e-88 337.0
28 TraesCS2A01G424900 chr3B 85.075 335 40 3 2030 2364 158154066 158154390 2.560000e-87 333.0
29 TraesCS2A01G424900 chr5A 89.189 185 19 1 1 185 581490460 581490643 3.460000e-56 230.0
30 TraesCS2A01G424900 chr5A 77.419 155 29 6 29 181 608471479 608471629 2.200000e-13 87.9
31 TraesCS2A01G424900 chr4D 81.579 190 26 5 1 185 66528541 66528726 9.960000e-32 148.0
32 TraesCS2A01G424900 chr7B 84.685 111 16 1 75 185 426782398 426782507 4.700000e-20 110.0
33 TraesCS2A01G424900 chr7B 100.000 28 0 0 2001 2028 428491464 428491491 8.000000e-03 52.8
34 TraesCS2A01G424900 chr5B 79.085 153 27 5 29 178 600362071 600362221 2.830000e-17 100.0
35 TraesCS2A01G424900 chr7D 87.209 86 8 3 181 265 564063264 564063181 1.320000e-15 95.3
36 TraesCS2A01G424900 chr3A 96.970 33 1 0 1996 2028 720229627 720229595 6.210000e-04 56.5
37 TraesCS2A01G424900 chr1B 100.000 29 0 0 2000 2028 17275214 17275242 2.000000e-03 54.7
38 TraesCS2A01G424900 chrUn 100.000 28 0 0 2001 2028 371455367 371455394 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G424900 chr2A 678959731 678964176 4445 False 3727.500000 6553 100.000000 1 4446 2 chr2A.!!$F3 4445
1 TraesCS2A01G424900 chr2B 637571850 637575364 3514 False 1482.333333 2444 88.864000 900 4443 3 chr2B.!!$F2 3543
2 TraesCS2A01G424900 chr2D 536148645 536152190 3545 False 757.166667 1543 89.885167 899 4446 6 chr2D.!!$F3 3547
3 TraesCS2A01G424900 chr2D 5145166 5146131 965 True 436.666667 662 90.584667 1008 2108 3 chr2D.!!$R1 1100
4 TraesCS2A01G424900 chr6B 404362335 404363241 906 True 559.000000 730 87.898000 1371 2364 2 chr6B.!!$R1 993
5 TraesCS2A01G424900 chr3B 158153485 158154390 905 False 520.500000 708 86.091000 1370 2364 2 chr3B.!!$F1 994
6 TraesCS2A01G424900 chr3B 46802174 46803080 906 True 518.000000 699 86.082500 1370 2364 2 chr3B.!!$R1 994

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
259 260 0.034089 ACCTTGCATTGTAGGAGGCC 60.034 55.0 9.19 0.0 35.45 5.19 F
398 399 0.035458 CCCAACGGCTTTCTGTCTCT 59.965 55.0 0.00 0.0 0.00 3.10 F
473 474 0.036306 TTTCCTCCTGCTTTCCGTCC 59.964 55.0 0.00 0.0 0.00 4.79 F
2020 2038 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.0 5.23 0.0 44.66 3.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2001 2019 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.0 13.64 0.0 46.06 2.12 R
2006 2024 0.250597 AAGTTTTTCCGGACGGAGGG 60.251 55.0 13.64 0.0 46.06 4.30 R
2325 2506 0.391263 GACCTCCGTCACATTGTCCC 60.391 60.0 0.00 0.0 38.99 4.46 R
3940 4262 0.243636 GCACGCCTTTTACATGCCTT 59.756 50.0 0.00 0.0 0.00 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
59 60 4.255833 CATGTTTGCATGTTAAGGTGGT 57.744 40.909 0.00 0.00 45.48 4.16
60 61 4.630111 CATGTTTGCATGTTAAGGTGGTT 58.370 39.130 0.00 0.00 45.48 3.67
61 62 4.744795 TGTTTGCATGTTAAGGTGGTTT 57.255 36.364 0.00 0.00 0.00 3.27
62 63 5.091261 TGTTTGCATGTTAAGGTGGTTTT 57.909 34.783 0.00 0.00 0.00 2.43
63 64 5.491982 TGTTTGCATGTTAAGGTGGTTTTT 58.508 33.333 0.00 0.00 0.00 1.94
89 90 2.980541 CAGGATTGCATGTTGGGGT 58.019 52.632 0.00 0.00 0.00 4.95
90 91 0.819582 CAGGATTGCATGTTGGGGTC 59.180 55.000 0.00 0.00 0.00 4.46
91 92 0.680921 AGGATTGCATGTTGGGGTCG 60.681 55.000 0.00 0.00 0.00 4.79
92 93 0.679640 GGATTGCATGTTGGGGTCGA 60.680 55.000 0.00 0.00 0.00 4.20
93 94 0.451783 GATTGCATGTTGGGGTCGAC 59.548 55.000 7.13 7.13 0.00 4.20
94 95 0.251121 ATTGCATGTTGGGGTCGACA 60.251 50.000 18.91 0.00 41.16 4.35
95 96 0.251121 TTGCATGTTGGGGTCGACAT 60.251 50.000 18.91 0.00 46.13 3.06
96 97 0.251121 TGCATGTTGGGGTCGACATT 60.251 50.000 18.91 0.00 43.55 2.71
97 98 0.887933 GCATGTTGGGGTCGACATTT 59.112 50.000 18.91 0.00 43.55 2.32
98 99 1.135402 GCATGTTGGGGTCGACATTTC 60.135 52.381 18.91 0.00 43.55 2.17
99 100 2.436417 CATGTTGGGGTCGACATTTCT 58.564 47.619 18.91 0.00 43.55 2.52
100 101 2.649531 TGTTGGGGTCGACATTTCTT 57.350 45.000 18.91 0.00 32.62 2.52
101 102 3.773418 TGTTGGGGTCGACATTTCTTA 57.227 42.857 18.91 0.00 32.62 2.10
102 103 4.088056 TGTTGGGGTCGACATTTCTTAA 57.912 40.909 18.91 0.00 32.62 1.85
103 104 4.658063 TGTTGGGGTCGACATTTCTTAAT 58.342 39.130 18.91 0.00 32.62 1.40
104 105 5.806818 TGTTGGGGTCGACATTTCTTAATA 58.193 37.500 18.91 0.00 32.62 0.98
105 106 5.644636 TGTTGGGGTCGACATTTCTTAATAC 59.355 40.000 18.91 1.98 32.62 1.89
106 107 5.423704 TGGGGTCGACATTTCTTAATACA 57.576 39.130 18.91 0.00 0.00 2.29
107 108 5.996644 TGGGGTCGACATTTCTTAATACAT 58.003 37.500 18.91 0.00 0.00 2.29
108 109 5.820423 TGGGGTCGACATTTCTTAATACATG 59.180 40.000 18.91 0.00 0.00 3.21
109 110 5.820947 GGGGTCGACATTTCTTAATACATGT 59.179 40.000 18.91 2.69 32.41 3.21
110 111 6.317893 GGGGTCGACATTTCTTAATACATGTT 59.682 38.462 18.91 0.00 29.81 2.71
111 112 7.496591 GGGGTCGACATTTCTTAATACATGTTA 59.503 37.037 18.91 0.00 29.81 2.41
112 113 8.885722 GGGTCGACATTTCTTAATACATGTTAA 58.114 33.333 18.91 0.00 29.81 2.01
126 127 8.532186 AATACATGTTAAATGATAAGGTGGCA 57.468 30.769 2.30 0.00 0.00 4.92
127 128 8.710749 ATACATGTTAAATGATAAGGTGGCAT 57.289 30.769 2.30 0.00 0.00 4.40
128 129 9.806448 ATACATGTTAAATGATAAGGTGGCATA 57.194 29.630 2.30 0.00 0.00 3.14
129 130 7.940850 ACATGTTAAATGATAAGGTGGCATAC 58.059 34.615 0.00 0.00 0.00 2.39
130 131 7.779798 ACATGTTAAATGATAAGGTGGCATACT 59.220 33.333 0.00 0.00 0.00 2.12
131 132 8.632679 CATGTTAAATGATAAGGTGGCATACTT 58.367 33.333 11.33 11.33 0.00 2.24
132 133 7.995289 TGTTAAATGATAAGGTGGCATACTTG 58.005 34.615 15.06 0.00 0.00 3.16
151 152 6.442513 ACTTGCATGTTAAGAGAAATAGGC 57.557 37.500 15.70 0.00 0.00 3.93
152 153 6.183347 ACTTGCATGTTAAGAGAAATAGGCT 58.817 36.000 15.70 0.00 29.99 4.58
153 154 7.338710 ACTTGCATGTTAAGAGAAATAGGCTA 58.661 34.615 15.70 0.00 29.99 3.93
154 155 7.497249 ACTTGCATGTTAAGAGAAATAGGCTAG 59.503 37.037 15.70 0.00 36.66 3.42
155 156 5.760253 TGCATGTTAAGAGAAATAGGCTAGC 59.240 40.000 6.04 6.04 29.99 3.42
156 157 5.760253 GCATGTTAAGAGAAATAGGCTAGCA 59.240 40.000 18.24 0.00 0.00 3.49
157 158 6.260936 GCATGTTAAGAGAAATAGGCTAGCAA 59.739 38.462 18.24 4.01 0.00 3.91
158 159 7.201732 GCATGTTAAGAGAAATAGGCTAGCAAA 60.202 37.037 18.24 3.59 0.00 3.68
159 160 7.849804 TGTTAAGAGAAATAGGCTAGCAAAG 57.150 36.000 18.24 0.00 0.00 2.77
160 161 6.823689 TGTTAAGAGAAATAGGCTAGCAAAGG 59.176 38.462 18.24 0.00 0.00 3.11
173 174 6.436843 GCTAGCAAAGGCAAACTATTTAGA 57.563 37.500 10.63 0.00 44.61 2.10
174 175 7.032377 GCTAGCAAAGGCAAACTATTTAGAT 57.968 36.000 10.63 0.00 44.61 1.98
175 176 8.154649 GCTAGCAAAGGCAAACTATTTAGATA 57.845 34.615 10.63 0.00 44.61 1.98
176 177 8.787852 GCTAGCAAAGGCAAACTATTTAGATAT 58.212 33.333 10.63 0.00 44.61 1.63
195 196 9.692749 TTAGATATAGAAAGATAAGCACCGTTG 57.307 33.333 0.00 0.00 0.00 4.10
239 240 4.820894 TCTCTAAACACCTTCCCTAAGC 57.179 45.455 0.00 0.00 0.00 3.09
240 241 4.164981 TCTCTAAACACCTTCCCTAAGCA 58.835 43.478 0.00 0.00 0.00 3.91
241 242 4.020485 TCTCTAAACACCTTCCCTAAGCAC 60.020 45.833 0.00 0.00 0.00 4.40
242 243 2.287977 AAACACCTTCCCTAAGCACC 57.712 50.000 0.00 0.00 0.00 5.01
243 244 1.446016 AACACCTTCCCTAAGCACCT 58.554 50.000 0.00 0.00 0.00 4.00
244 245 1.446016 ACACCTTCCCTAAGCACCTT 58.554 50.000 0.00 0.00 0.00 3.50
245 246 1.073923 ACACCTTCCCTAAGCACCTTG 59.926 52.381 0.00 0.00 0.00 3.61
246 247 0.038310 ACCTTCCCTAAGCACCTTGC 59.962 55.000 0.00 0.00 45.46 4.01
257 258 1.098050 GCACCTTGCATTGTAGGAGG 58.902 55.000 9.19 2.93 44.26 4.30
258 259 1.098050 CACCTTGCATTGTAGGAGGC 58.902 55.000 9.19 0.00 35.45 4.70
259 260 0.034089 ACCTTGCATTGTAGGAGGCC 60.034 55.000 9.19 0.00 35.45 5.19
260 261 0.257039 CCTTGCATTGTAGGAGGCCT 59.743 55.000 3.86 3.86 37.71 5.19
261 262 1.490490 CCTTGCATTGTAGGAGGCCTA 59.510 52.381 4.42 0.00 34.61 3.93
262 263 2.092429 CCTTGCATTGTAGGAGGCCTAA 60.092 50.000 4.42 0.00 37.91 2.69
263 264 3.209410 CTTGCATTGTAGGAGGCCTAAG 58.791 50.000 4.42 0.00 37.91 2.18
264 265 1.134098 TGCATTGTAGGAGGCCTAAGC 60.134 52.381 4.42 0.00 37.91 3.09
265 266 1.871080 CATTGTAGGAGGCCTAAGCG 58.129 55.000 4.42 0.00 37.91 4.68
266 267 0.106894 ATTGTAGGAGGCCTAAGCGC 59.893 55.000 4.42 0.00 37.91 5.92
275 276 3.396951 GCCTAAGCGCCAAATAGGA 57.603 52.632 22.87 0.00 41.22 2.94
276 277 1.675552 GCCTAAGCGCCAAATAGGAA 58.324 50.000 22.87 0.00 41.22 3.36
277 278 2.021457 GCCTAAGCGCCAAATAGGAAA 58.979 47.619 22.87 0.00 41.22 3.13
278 279 2.623416 GCCTAAGCGCCAAATAGGAAAT 59.377 45.455 22.87 0.00 41.22 2.17
279 280 3.550842 GCCTAAGCGCCAAATAGGAAATG 60.551 47.826 22.87 4.15 41.22 2.32
280 281 2.584492 AAGCGCCAAATAGGAAATGC 57.416 45.000 2.29 0.00 41.22 3.56
281 282 0.746659 AGCGCCAAATAGGAAATGCC 59.253 50.000 2.29 0.00 41.22 4.40
282 283 0.459489 GCGCCAAATAGGAAATGCCA 59.541 50.000 0.00 0.00 41.22 4.92
283 284 1.536709 GCGCCAAATAGGAAATGCCAG 60.537 52.381 0.00 0.00 41.22 4.85
284 285 1.536709 CGCCAAATAGGAAATGCCAGC 60.537 52.381 0.00 0.00 41.22 4.85
285 286 1.758862 GCCAAATAGGAAATGCCAGCT 59.241 47.619 0.00 0.00 41.22 4.24
286 287 2.223900 GCCAAATAGGAAATGCCAGCTC 60.224 50.000 0.00 0.00 41.22 4.09
287 288 3.294214 CCAAATAGGAAATGCCAGCTCT 58.706 45.455 0.00 0.00 41.22 4.09
288 289 3.703052 CCAAATAGGAAATGCCAGCTCTT 59.297 43.478 0.00 0.00 41.22 2.85
289 290 4.441079 CCAAATAGGAAATGCCAGCTCTTG 60.441 45.833 0.00 0.00 41.22 3.02
290 291 1.755179 TAGGAAATGCCAGCTCTTGC 58.245 50.000 0.00 0.00 40.02 4.01
291 292 1.138247 GGAAATGCCAGCTCTTGCG 59.862 57.895 0.00 0.00 45.42 4.85
292 293 1.515736 GAAATGCCAGCTCTTGCGC 60.516 57.895 0.00 0.00 45.42 6.09
293 294 1.930908 GAAATGCCAGCTCTTGCGCT 61.931 55.000 9.73 0.00 45.42 5.92
299 300 4.012811 AGCTCTTGCGCTGCTCCA 62.013 61.111 9.73 0.00 45.42 3.86
300 301 3.497932 GCTCTTGCGCTGCTCCAG 61.498 66.667 9.73 0.00 34.12 3.86
301 302 2.818714 CTCTTGCGCTGCTCCAGG 60.819 66.667 9.73 0.00 31.21 4.45
307 308 2.359107 CGCTGCTCCAGGCTGAAA 60.359 61.111 17.94 2.43 41.52 2.69
308 309 2.396955 CGCTGCTCCAGGCTGAAAG 61.397 63.158 17.94 13.88 41.52 2.62
309 310 2.045131 GCTGCTCCAGGCTGAAAGG 61.045 63.158 17.94 0.00 41.52 3.11
321 322 2.144482 CTGAAAGGCCAGCTTTGTTG 57.856 50.000 5.01 0.00 0.00 3.33
322 323 0.104671 TGAAAGGCCAGCTTTGTTGC 59.895 50.000 5.01 0.00 0.00 4.17
323 324 0.601046 GAAAGGCCAGCTTTGTTGCC 60.601 55.000 5.01 0.00 44.35 4.52
325 326 2.653115 GGCCAGCTTTGTTGCCTC 59.347 61.111 0.00 0.00 40.77 4.70
326 327 2.202395 GGCCAGCTTTGTTGCCTCA 61.202 57.895 0.00 0.00 40.77 3.86
327 328 1.006922 GCCAGCTTTGTTGCCTCAC 60.007 57.895 0.00 0.00 0.00 3.51
328 329 1.458639 GCCAGCTTTGTTGCCTCACT 61.459 55.000 0.00 0.00 0.00 3.41
329 330 1.896220 CCAGCTTTGTTGCCTCACTA 58.104 50.000 0.00 0.00 0.00 2.74
330 331 1.537202 CCAGCTTTGTTGCCTCACTAC 59.463 52.381 0.00 0.00 0.00 2.73
331 332 1.537202 CAGCTTTGTTGCCTCACTACC 59.463 52.381 0.00 0.00 0.00 3.18
332 333 1.142870 AGCTTTGTTGCCTCACTACCA 59.857 47.619 0.00 0.00 0.00 3.25
333 334 1.266989 GCTTTGTTGCCTCACTACCAC 59.733 52.381 0.00 0.00 0.00 4.16
334 335 1.880027 CTTTGTTGCCTCACTACCACC 59.120 52.381 0.00 0.00 0.00 4.61
335 336 0.250124 TTGTTGCCTCACTACCACCG 60.250 55.000 0.00 0.00 0.00 4.94
336 337 1.375523 GTTGCCTCACTACCACCGG 60.376 63.158 0.00 0.00 0.00 5.28
337 338 2.589157 TTGCCTCACTACCACCGGG 61.589 63.158 6.32 0.00 41.29 5.73
338 339 4.468689 GCCTCACTACCACCGGGC 62.469 72.222 6.32 0.00 37.90 6.13
339 340 3.782443 CCTCACTACCACCGGGCC 61.782 72.222 6.32 0.00 37.90 5.80
340 341 4.143333 CTCACTACCACCGGGCCG 62.143 72.222 21.46 21.46 37.90 6.13
344 345 4.910585 CTACCACCGGGCCGCATC 62.911 72.222 23.20 0.00 37.90 3.91
366 367 2.520260 CCTAATGGGCTGCCAGGC 60.520 66.667 22.05 10.26 40.51 4.85
396 397 4.800554 CCCAACGGCTTTCTGTCT 57.199 55.556 0.00 0.00 0.00 3.41
397 398 2.544726 CCCAACGGCTTTCTGTCTC 58.455 57.895 0.00 0.00 0.00 3.36
398 399 0.035458 CCCAACGGCTTTCTGTCTCT 59.965 55.000 0.00 0.00 0.00 3.10
399 400 1.433534 CCAACGGCTTTCTGTCTCTC 58.566 55.000 0.00 0.00 0.00 3.20
400 401 1.063806 CAACGGCTTTCTGTCTCTCG 58.936 55.000 0.00 0.00 0.00 4.04
401 402 0.038159 AACGGCTTTCTGTCTCTCGG 60.038 55.000 0.00 0.00 0.00 4.63
402 403 1.179814 ACGGCTTTCTGTCTCTCGGT 61.180 55.000 0.00 0.00 0.00 4.69
403 404 0.038159 CGGCTTTCTGTCTCTCGGTT 60.038 55.000 0.00 0.00 0.00 4.44
404 405 1.715993 GGCTTTCTGTCTCTCGGTTC 58.284 55.000 0.00 0.00 0.00 3.62
405 406 1.273886 GGCTTTCTGTCTCTCGGTTCT 59.726 52.381 0.00 0.00 0.00 3.01
406 407 2.289133 GGCTTTCTGTCTCTCGGTTCTT 60.289 50.000 0.00 0.00 0.00 2.52
407 408 2.990514 GCTTTCTGTCTCTCGGTTCTTC 59.009 50.000 0.00 0.00 0.00 2.87
408 409 2.991434 TTCTGTCTCTCGGTTCTTCG 57.009 50.000 0.00 0.00 0.00 3.79
409 410 1.166129 TCTGTCTCTCGGTTCTTCGG 58.834 55.000 0.00 0.00 0.00 4.30
410 411 0.171455 CTGTCTCTCGGTTCTTCGGG 59.829 60.000 0.00 0.00 0.00 5.14
411 412 0.538977 TGTCTCTCGGTTCTTCGGGT 60.539 55.000 0.00 0.00 31.63 5.28
412 413 0.602060 GTCTCTCGGTTCTTCGGGTT 59.398 55.000 0.00 0.00 31.63 4.11
413 414 0.601558 TCTCTCGGTTCTTCGGGTTG 59.398 55.000 0.00 0.00 31.63 3.77
414 415 0.389948 CTCTCGGTTCTTCGGGTTGG 60.390 60.000 0.00 0.00 31.63 3.77
415 416 1.117142 TCTCGGTTCTTCGGGTTGGT 61.117 55.000 0.00 0.00 31.63 3.67
416 417 0.250166 CTCGGTTCTTCGGGTTGGTT 60.250 55.000 0.00 0.00 0.00 3.67
417 418 0.249996 TCGGTTCTTCGGGTTGGTTC 60.250 55.000 0.00 0.00 0.00 3.62
418 419 1.562575 CGGTTCTTCGGGTTGGTTCG 61.563 60.000 0.00 0.00 0.00 3.95
419 420 1.572941 GTTCTTCGGGTTGGTTCGC 59.427 57.895 0.00 0.00 0.00 4.70
420 421 1.957186 TTCTTCGGGTTGGTTCGCG 60.957 57.895 0.00 0.00 43.33 5.87
423 424 2.662527 TCGGGTTGGTTCGCGAAC 60.663 61.111 37.43 37.43 46.38 3.95
424 425 2.968156 CGGGTTGGTTCGCGAACA 60.968 61.111 42.35 29.37 44.40 3.18
425 426 2.943653 GGGTTGGTTCGCGAACAG 59.056 61.111 42.35 1.25 42.85 3.16
426 427 2.613506 GGGTTGGTTCGCGAACAGG 61.614 63.158 42.35 0.42 42.85 4.00
427 428 2.251371 GTTGGTTCGCGAACAGGC 59.749 61.111 42.35 29.63 42.85 4.85
428 429 2.975799 TTGGTTCGCGAACAGGCC 60.976 61.111 42.35 30.12 42.85 5.19
431 432 4.072088 GTTCGCGAACAGGCCGTG 62.072 66.667 39.21 0.00 40.84 4.94
432 433 4.287781 TTCGCGAACAGGCCGTGA 62.288 61.111 19.38 0.59 43.56 4.35
435 436 4.980805 GCGAACAGGCCGTGACCA 62.981 66.667 8.91 0.00 0.00 4.02
436 437 2.738521 CGAACAGGCCGTGACCAG 60.739 66.667 8.91 0.00 0.00 4.00
437 438 3.050275 GAACAGGCCGTGACCAGC 61.050 66.667 8.91 0.00 0.00 4.85
438 439 3.537206 GAACAGGCCGTGACCAGCT 62.537 63.158 8.91 0.00 0.00 4.24
439 440 3.120086 AACAGGCCGTGACCAGCTT 62.120 57.895 8.91 0.00 0.00 3.74
440 441 2.281761 CAGGCCGTGACCAGCTTT 60.282 61.111 0.00 0.00 0.00 3.51
441 442 2.032681 AGGCCGTGACCAGCTTTC 59.967 61.111 0.00 0.00 0.00 2.62
442 443 2.032681 GGCCGTGACCAGCTTTCT 59.967 61.111 0.00 0.00 0.00 2.52
443 444 1.600916 GGCCGTGACCAGCTTTCTT 60.601 57.895 0.00 0.00 0.00 2.52
444 445 1.576421 GCCGTGACCAGCTTTCTTG 59.424 57.895 0.00 0.00 0.00 3.02
445 446 1.166531 GCCGTGACCAGCTTTCTTGT 61.167 55.000 0.00 0.00 0.00 3.16
446 447 0.588252 CCGTGACCAGCTTTCTTGTG 59.412 55.000 0.00 0.00 0.00 3.33
447 448 0.040958 CGTGACCAGCTTTCTTGTGC 60.041 55.000 0.00 0.00 0.00 4.57
448 449 0.312102 GTGACCAGCTTTCTTGTGCC 59.688 55.000 0.00 0.00 0.00 5.01
449 450 1.165907 TGACCAGCTTTCTTGTGCCG 61.166 55.000 0.00 0.00 0.00 5.69
450 451 2.256461 CCAGCTTTCTTGTGCCGC 59.744 61.111 0.00 0.00 0.00 6.53
451 452 2.256461 CAGCTTTCTTGTGCCGCC 59.744 61.111 0.00 0.00 0.00 6.13
452 453 2.985847 AGCTTTCTTGTGCCGCCC 60.986 61.111 0.00 0.00 0.00 6.13
453 454 4.404654 GCTTTCTTGTGCCGCCCG 62.405 66.667 0.00 0.00 0.00 6.13
454 455 2.978010 CTTTCTTGTGCCGCCCGT 60.978 61.111 0.00 0.00 0.00 5.28
455 456 2.517402 TTTCTTGTGCCGCCCGTT 60.517 55.556 0.00 0.00 0.00 4.44
456 457 2.070654 CTTTCTTGTGCCGCCCGTTT 62.071 55.000 0.00 0.00 0.00 3.60
457 458 2.065906 TTTCTTGTGCCGCCCGTTTC 62.066 55.000 0.00 0.00 0.00 2.78
458 459 4.038080 CTTGTGCCGCCCGTTTCC 62.038 66.667 0.00 0.00 0.00 3.13
459 460 4.572571 TTGTGCCGCCCGTTTCCT 62.573 61.111 0.00 0.00 0.00 3.36
465 466 4.394712 CGCCCGTTTCCTCCTGCT 62.395 66.667 0.00 0.00 0.00 4.24
466 467 2.034221 GCCCGTTTCCTCCTGCTT 59.966 61.111 0.00 0.00 0.00 3.91
467 468 1.603739 GCCCGTTTCCTCCTGCTTT 60.604 57.895 0.00 0.00 0.00 3.51
468 469 1.587043 GCCCGTTTCCTCCTGCTTTC 61.587 60.000 0.00 0.00 0.00 2.62
469 470 0.960861 CCCGTTTCCTCCTGCTTTCC 60.961 60.000 0.00 0.00 0.00 3.13
470 471 1.298859 CCGTTTCCTCCTGCTTTCCG 61.299 60.000 0.00 0.00 0.00 4.30
471 472 0.602905 CGTTTCCTCCTGCTTTCCGT 60.603 55.000 0.00 0.00 0.00 4.69
472 473 1.157585 GTTTCCTCCTGCTTTCCGTC 58.842 55.000 0.00 0.00 0.00 4.79
473 474 0.036306 TTTCCTCCTGCTTTCCGTCC 59.964 55.000 0.00 0.00 0.00 4.79
474 475 1.838073 TTCCTCCTGCTTTCCGTCCC 61.838 60.000 0.00 0.00 0.00 4.46
475 476 2.269241 CTCCTGCTTTCCGTCCCC 59.731 66.667 0.00 0.00 0.00 4.81
476 477 2.203938 TCCTGCTTTCCGTCCCCT 60.204 61.111 0.00 0.00 0.00 4.79
477 478 2.245438 CTCCTGCTTTCCGTCCCCTC 62.245 65.000 0.00 0.00 0.00 4.30
478 479 2.294078 CCTGCTTTCCGTCCCCTCT 61.294 63.158 0.00 0.00 0.00 3.69
479 480 1.679898 CTGCTTTCCGTCCCCTCTT 59.320 57.895 0.00 0.00 0.00 2.85
480 481 0.036875 CTGCTTTCCGTCCCCTCTTT 59.963 55.000 0.00 0.00 0.00 2.52
481 482 0.036306 TGCTTTCCGTCCCCTCTTTC 59.964 55.000 0.00 0.00 0.00 2.62
482 483 0.325272 GCTTTCCGTCCCCTCTTTCT 59.675 55.000 0.00 0.00 0.00 2.52
483 484 1.676314 GCTTTCCGTCCCCTCTTTCTC 60.676 57.143 0.00 0.00 0.00 2.87
484 485 0.981943 TTTCCGTCCCCTCTTTCTCC 59.018 55.000 0.00 0.00 0.00 3.71
485 486 0.908180 TTCCGTCCCCTCTTTCTCCC 60.908 60.000 0.00 0.00 0.00 4.30
486 487 2.368011 CCGTCCCCTCTTTCTCCCC 61.368 68.421 0.00 0.00 0.00 4.81
487 488 2.368011 CGTCCCCTCTTTCTCCCCC 61.368 68.421 0.00 0.00 0.00 5.40
950 951 0.107654 CCCGAGAAAAATCGAGGCCT 60.108 55.000 3.86 3.86 45.56 5.19
951 952 1.291132 CCGAGAAAAATCGAGGCCTC 58.709 55.000 23.79 23.79 45.56 4.70
952 953 1.405526 CCGAGAAAAATCGAGGCCTCA 60.406 52.381 31.67 19.07 45.56 3.86
953 954 1.929836 CGAGAAAAATCGAGGCCTCAG 59.070 52.381 31.67 23.05 45.56 3.35
1290 1303 2.764547 CCTCCTTCCCCGACTCCC 60.765 72.222 0.00 0.00 0.00 4.30
1304 1317 4.090588 TCCCGCCGTGGATTGGAC 62.091 66.667 0.00 0.00 42.00 4.02
1350 1363 3.400007 GCTGATTTCCGGCTCGAC 58.600 61.111 0.00 0.00 43.80 4.20
1358 1371 0.102481 TTCCGGCTCGACTGCTAATC 59.898 55.000 0.00 0.00 0.00 1.75
1530 1543 3.893326 ACACCATGAACATGATCGAGA 57.107 42.857 15.21 0.00 41.20 4.04
1568 1581 1.468520 CACTTTGCCGTCGATCCAAAT 59.531 47.619 0.00 0.00 0.00 2.32
1583 1596 4.844349 TCCAAATCTTACCTCCAAGGAG 57.156 45.455 9.20 9.20 37.67 3.69
1609 1622 1.142314 CTGCCTGCTCTCTGCTCTC 59.858 63.158 0.00 0.00 43.37 3.20
1612 1625 1.737355 GCCTGCTCTCTGCTCTCGAT 61.737 60.000 0.00 0.00 43.37 3.59
1613 1626 1.603456 CCTGCTCTCTGCTCTCGATA 58.397 55.000 0.00 0.00 43.37 2.92
1615 1628 2.095110 CCTGCTCTCTGCTCTCGATATG 60.095 54.545 0.00 0.00 43.37 1.78
1620 1633 4.932799 GCTCTCTGCTCTCGATATGTACTA 59.067 45.833 0.00 0.00 38.95 1.82
1629 1643 6.128227 GCTCTCGATATGTACTACCCTTAGTG 60.128 46.154 0.00 0.00 39.06 2.74
1633 1647 6.261603 TCGATATGTACTACCCTTAGTGTGTG 59.738 42.308 0.00 0.00 39.06 3.82
1635 1649 4.859304 TGTACTACCCTTAGTGTGTGTG 57.141 45.455 0.00 0.00 39.06 3.82
1637 1651 3.746045 ACTACCCTTAGTGTGTGTGTG 57.254 47.619 0.00 0.00 37.15 3.82
1639 1653 0.531974 ACCCTTAGTGTGTGTGTGCG 60.532 55.000 0.00 0.00 0.00 5.34
1641 1655 0.581529 CCTTAGTGTGTGTGTGCGTG 59.418 55.000 0.00 0.00 0.00 5.34
1643 1657 1.003108 TTAGTGTGTGTGTGCGTGTG 58.997 50.000 0.00 0.00 0.00 3.82
1646 1660 1.669437 TGTGTGTGTGCGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
1647 1661 1.225991 GTGTGTGTGCGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
1648 1662 1.669437 TGTGTGTGCGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
1649 1663 1.225991 GTGTGTGCGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
1650 1664 1.669437 TGTGTGCGTGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
1652 1666 1.079474 TGTGCGTGTGTGTGTGTCT 60.079 52.632 0.00 0.00 0.00 3.41
1653 1667 0.173708 TGTGCGTGTGTGTGTGTCTA 59.826 50.000 0.00 0.00 0.00 2.59
1654 1668 1.202475 TGTGCGTGTGTGTGTGTCTAT 60.202 47.619 0.00 0.00 0.00 1.98
1655 1669 2.034812 TGTGCGTGTGTGTGTGTCTATA 59.965 45.455 0.00 0.00 0.00 1.31
1656 1670 3.250744 GTGCGTGTGTGTGTGTCTATAT 58.749 45.455 0.00 0.00 0.00 0.86
1657 1671 4.082679 TGTGCGTGTGTGTGTGTCTATATA 60.083 41.667 0.00 0.00 0.00 0.86
1658 1672 5.041287 GTGCGTGTGTGTGTGTCTATATAT 58.959 41.667 0.00 0.00 0.00 0.86
1659 1673 6.183360 TGTGCGTGTGTGTGTGTCTATATATA 60.183 38.462 0.00 0.00 0.00 0.86
1660 1674 6.861572 GTGCGTGTGTGTGTGTCTATATATAT 59.138 38.462 0.00 0.00 0.00 0.86
1725 1739 2.294233 TCACCTGCAGTGCATTTTCTTC 59.706 45.455 20.10 0.00 46.81 2.87
1728 1742 3.243636 ACCTGCAGTGCATTTTCTTCAAG 60.244 43.478 20.10 2.27 38.13 3.02
1769 1787 8.652463 GGCCAAATTATTGTACACATTACAAAC 58.348 33.333 0.00 0.00 40.32 2.93
1774 1792 4.839668 TTGTACACATTACAAACAGCCC 57.160 40.909 0.00 0.00 34.84 5.19
1832 1850 5.874093 AGTTGCCATGCTAGCTTAGAATAT 58.126 37.500 17.23 0.00 0.00 1.28
1838 1856 6.294397 GCCATGCTAGCTTAGAATATTTTGCT 60.294 38.462 17.23 9.28 34.92 3.91
1862 1880 8.973378 GCTTGAAGTGATGATATCTTACTGTAC 58.027 37.037 3.98 0.00 0.00 2.90
1934 1952 3.146066 GTCATGTACAAGTCCTTGCCAA 58.854 45.455 0.00 0.00 44.03 4.52
1958 1976 2.738846 CAGCAACTTCAGTCGCAAGTAT 59.261 45.455 0.00 0.00 32.71 2.12
1963 1981 2.068519 CTTCAGTCGCAAGTATGTGCA 58.931 47.619 0.00 0.00 45.19 4.57
1964 1982 2.385013 TCAGTCGCAAGTATGTGCAT 57.615 45.000 0.00 0.00 45.19 3.96
1965 1983 3.518634 TCAGTCGCAAGTATGTGCATA 57.481 42.857 0.00 0.00 45.19 3.14
1966 1984 4.058721 TCAGTCGCAAGTATGTGCATAT 57.941 40.909 0.31 0.31 45.19 1.78
1967 1985 3.803778 TCAGTCGCAAGTATGTGCATATG 59.196 43.478 6.16 0.00 45.19 1.78
1968 1986 3.803778 CAGTCGCAAGTATGTGCATATGA 59.196 43.478 6.97 0.00 45.19 2.15
1969 1987 4.270808 CAGTCGCAAGTATGTGCATATGAA 59.729 41.667 6.97 0.00 45.19 2.57
1970 1988 5.049886 CAGTCGCAAGTATGTGCATATGAAT 60.050 40.000 6.97 0.00 45.19 2.57
1971 1989 6.146021 CAGTCGCAAGTATGTGCATATGAATA 59.854 38.462 6.97 0.00 45.19 1.75
1972 1990 6.705825 AGTCGCAAGTATGTGCATATGAATAA 59.294 34.615 6.97 0.00 45.19 1.40
1973 1991 7.388776 AGTCGCAAGTATGTGCATATGAATAAT 59.611 33.333 6.97 0.00 45.19 1.28
1974 1992 7.689812 GTCGCAAGTATGTGCATATGAATAATC 59.310 37.037 6.97 0.00 45.19 1.75
1975 1993 7.603784 TCGCAAGTATGTGCATATGAATAATCT 59.396 33.333 6.97 0.00 45.19 2.40
1976 1994 8.232513 CGCAAGTATGTGCATATGAATAATCTT 58.767 33.333 6.97 1.20 45.19 2.40
1977 1995 9.903682 GCAAGTATGTGCATATGAATAATCTTT 57.096 29.630 6.97 0.00 44.29 2.52
1980 1998 8.939929 AGTATGTGCATATGAATAATCTTTCCG 58.060 33.333 6.97 0.00 0.00 4.30
1981 1999 6.558771 TGTGCATATGAATAATCTTTCCGG 57.441 37.500 6.97 0.00 0.00 5.14
1982 2000 6.295249 TGTGCATATGAATAATCTTTCCGGA 58.705 36.000 6.97 0.00 0.00 5.14
1983 2001 6.427853 TGTGCATATGAATAATCTTTCCGGAG 59.572 38.462 6.97 0.00 0.00 4.63
1984 2002 6.650807 GTGCATATGAATAATCTTTCCGGAGA 59.349 38.462 6.97 0.00 0.00 3.71
1985 2003 7.335422 GTGCATATGAATAATCTTTCCGGAGAT 59.665 37.037 6.97 1.63 37.99 2.75
1986 2004 8.539544 TGCATATGAATAATCTTTCCGGAGATA 58.460 33.333 6.97 0.00 35.37 1.98
1987 2005 9.553064 GCATATGAATAATCTTTCCGGAGATAT 57.447 33.333 6.97 0.00 35.37 1.63
2012 2030 7.170393 TCATTCATATTACATACTCCCTCCG 57.830 40.000 0.00 0.00 0.00 4.63
2013 2031 6.724441 TCATTCATATTACATACTCCCTCCGT 59.276 38.462 0.00 0.00 0.00 4.69
2014 2032 6.585695 TTCATATTACATACTCCCTCCGTC 57.414 41.667 0.00 0.00 0.00 4.79
2015 2033 5.014858 TCATATTACATACTCCCTCCGTCC 58.985 45.833 0.00 0.00 0.00 4.79
2016 2034 1.683943 TTACATACTCCCTCCGTCCG 58.316 55.000 0.00 0.00 0.00 4.79
2017 2035 0.179009 TACATACTCCCTCCGTCCGG 60.179 60.000 0.00 0.00 0.00 5.14
2018 2036 1.152819 CATACTCCCTCCGTCCGGA 60.153 63.158 0.00 0.00 42.90 5.14
2019 2037 0.754217 CATACTCCCTCCGTCCGGAA 60.754 60.000 5.23 0.00 44.66 4.30
2020 2038 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2021 2039 0.251742 TACTCCCTCCGTCCGGAAAA 60.252 55.000 5.23 0.00 44.66 2.29
2022 2040 1.123246 ACTCCCTCCGTCCGGAAAAA 61.123 55.000 5.23 0.00 44.66 1.94
2023 2041 0.672711 CTCCCTCCGTCCGGAAAAAC 60.673 60.000 5.23 0.00 44.66 2.43
2024 2042 1.123246 TCCCTCCGTCCGGAAAAACT 61.123 55.000 5.23 0.00 44.66 2.66
2025 2043 0.250597 CCCTCCGTCCGGAAAAACTT 60.251 55.000 5.23 0.00 44.66 2.66
2026 2044 0.872388 CCTCCGTCCGGAAAAACTTG 59.128 55.000 5.23 0.00 44.66 3.16
2027 2045 1.589803 CTCCGTCCGGAAAAACTTGT 58.410 50.000 5.23 0.00 44.66 3.16
2028 2046 2.548493 CCTCCGTCCGGAAAAACTTGTA 60.548 50.000 5.23 0.00 44.66 2.41
2068 2086 7.901029 TCTGGAGATATTCACTCATATTCCAC 58.099 38.462 0.00 0.00 36.26 4.02
2072 2090 7.601886 GGAGATATTCACTCATATTCCACACTG 59.398 40.741 0.00 0.00 36.26 3.66
2077 2095 7.423844 TTCACTCATATTCCACACTGTAGAT 57.576 36.000 0.00 0.00 0.00 1.98
2124 2142 4.437390 GGCATTGTCTATCAGTTTTGTCGG 60.437 45.833 0.00 0.00 0.00 4.79
2156 2174 4.116238 TGTTTTTCTTTTCAACCGATGGC 58.884 39.130 0.00 0.00 0.00 4.40
2190 2370 5.646793 GGCTACCCTAGTTAACCTCTTTTTG 59.353 44.000 0.88 0.00 0.00 2.44
2192 2372 5.917545 ACCCTAGTTAACCTCTTTTTGGA 57.082 39.130 0.88 0.00 0.00 3.53
2194 2374 6.246163 ACCCTAGTTAACCTCTTTTTGGATG 58.754 40.000 0.88 0.00 0.00 3.51
2224 2404 0.962356 ATGCCAGTACCTTGCACTGC 60.962 55.000 3.95 0.00 41.72 4.40
2227 2407 0.322816 CCAGTACCTTGCACTGCCAT 60.323 55.000 0.00 0.00 41.72 4.40
2245 2426 9.669353 CACTGCCATAATGTGATAAAAATACTC 57.331 33.333 0.00 0.00 33.95 2.59
2305 2486 6.084326 ACCTGTGTTTATGCTTTTACCTTG 57.916 37.500 0.00 0.00 0.00 3.61
2321 2502 7.556733 TTTACCTTGGTTATTATTACCTGCG 57.443 36.000 2.02 0.00 36.60 5.18
2324 2505 4.578928 CCTTGGTTATTATTACCTGCGCTT 59.421 41.667 9.73 0.00 36.60 4.68
2325 2506 5.493133 TTGGTTATTATTACCTGCGCTTG 57.507 39.130 9.73 1.34 36.60 4.01
2405 2588 5.247792 ACTTGTTATCTACTCCCGTTTCCTT 59.752 40.000 0.00 0.00 0.00 3.36
2478 2661 7.993758 AGAAGCTAATTGAGAACCCTAAATACC 59.006 37.037 0.00 0.00 0.00 2.73
2479 2662 6.289064 AGCTAATTGAGAACCCTAAATACCG 58.711 40.000 0.00 0.00 0.00 4.02
2480 2663 6.053650 GCTAATTGAGAACCCTAAATACCGT 58.946 40.000 0.00 0.00 0.00 4.83
2639 2822 9.746457 AGTCTTTTAGATTATCTTTTCCAAGCT 57.254 29.630 0.00 0.00 0.00 3.74
2640 2823 9.780413 GTCTTTTAGATTATCTTTTCCAAGCTG 57.220 33.333 0.00 0.00 0.00 4.24
2701 2885 2.288152 CCCCCATTGAACTTGTGTTTCG 60.288 50.000 0.00 0.00 36.39 3.46
2786 2974 8.849168 TGAATGGTTTATGCTATCATTTAGTGG 58.151 33.333 0.00 0.00 34.22 4.00
2816 3009 0.179018 ACTGAGAAGCTTGCCCGTTT 60.179 50.000 2.10 0.00 0.00 3.60
2831 3024 3.483421 CCCGTTTTCTCCTTTTGTACCT 58.517 45.455 0.00 0.00 0.00 3.08
2868 3061 9.814899 ATGATCTCAACATTCAAGTCTACTTAG 57.185 33.333 0.00 0.00 34.28 2.18
2869 3062 8.253810 TGATCTCAACATTCAAGTCTACTTAGG 58.746 37.037 0.00 0.00 34.28 2.69
2870 3063 6.398918 TCTCAACATTCAAGTCTACTTAGGC 58.601 40.000 0.00 0.00 34.28 3.93
2871 3064 6.211584 TCTCAACATTCAAGTCTACTTAGGCT 59.788 38.462 0.00 0.00 40.61 4.58
2872 3065 6.166279 TCAACATTCAAGTCTACTTAGGCTG 58.834 40.000 0.00 0.00 38.47 4.85
2873 3066 4.508662 ACATTCAAGTCTACTTAGGCTGC 58.491 43.478 0.00 0.00 38.47 5.25
2874 3067 4.223923 ACATTCAAGTCTACTTAGGCTGCT 59.776 41.667 0.00 0.00 38.47 4.24
2875 3068 4.891992 TTCAAGTCTACTTAGGCTGCTT 57.108 40.909 0.00 0.00 38.47 3.91
2876 3069 4.891992 TCAAGTCTACTTAGGCTGCTTT 57.108 40.909 0.00 0.00 38.47 3.51
2877 3070 4.569943 TCAAGTCTACTTAGGCTGCTTTG 58.430 43.478 0.00 0.00 38.47 2.77
2878 3071 4.040461 TCAAGTCTACTTAGGCTGCTTTGT 59.960 41.667 0.00 0.00 38.47 2.83
2879 3072 3.931578 AGTCTACTTAGGCTGCTTTGTG 58.068 45.455 0.00 0.00 36.79 3.33
2880 3073 3.325135 AGTCTACTTAGGCTGCTTTGTGT 59.675 43.478 0.00 0.00 36.79 3.72
2881 3074 4.065789 GTCTACTTAGGCTGCTTTGTGTT 58.934 43.478 0.00 0.00 0.00 3.32
2882 3075 4.152580 GTCTACTTAGGCTGCTTTGTGTTC 59.847 45.833 0.00 0.00 0.00 3.18
2883 3076 2.230660 ACTTAGGCTGCTTTGTGTTCC 58.769 47.619 0.00 0.00 0.00 3.62
2884 3077 2.158608 ACTTAGGCTGCTTTGTGTTCCT 60.159 45.455 0.00 0.00 0.00 3.36
2885 3078 2.185004 TAGGCTGCTTTGTGTTCCTC 57.815 50.000 0.00 0.00 0.00 3.71
2886 3079 0.475906 AGGCTGCTTTGTGTTCCTCT 59.524 50.000 0.00 0.00 0.00 3.69
2887 3080 0.877743 GGCTGCTTTGTGTTCCTCTC 59.122 55.000 0.00 0.00 0.00 3.20
2888 3081 0.877743 GCTGCTTTGTGTTCCTCTCC 59.122 55.000 0.00 0.00 0.00 3.71
2889 3082 1.544314 GCTGCTTTGTGTTCCTCTCCT 60.544 52.381 0.00 0.00 0.00 3.69
2890 3083 2.856222 CTGCTTTGTGTTCCTCTCCTT 58.144 47.619 0.00 0.00 0.00 3.36
2891 3084 3.217626 CTGCTTTGTGTTCCTCTCCTTT 58.782 45.455 0.00 0.00 0.00 3.11
2892 3085 2.951642 TGCTTTGTGTTCCTCTCCTTTG 59.048 45.455 0.00 0.00 0.00 2.77
2893 3086 2.952310 GCTTTGTGTTCCTCTCCTTTGT 59.048 45.455 0.00 0.00 0.00 2.83
3109 3322 5.753721 AAGAAAGTGGCTCTTCTACAGAT 57.246 39.130 1.81 0.00 35.02 2.90
3217 3430 1.229428 TGCAGAAACAGAGCCTTTCG 58.771 50.000 0.00 0.00 33.56 3.46
3270 3483 0.961019 AAGCCGCAGAAAAGATGCAA 59.039 45.000 0.00 0.00 44.05 4.08
3281 3494 6.210796 CAGAAAAGATGCAAAGAATGTGACA 58.789 36.000 0.00 0.00 0.00 3.58
3379 3592 2.186384 CTTCCTCCGCTCAGCCAG 59.814 66.667 0.00 0.00 0.00 4.85
3391 3604 0.252239 TCAGCCAGGAGGAGTGCTTA 60.252 55.000 0.00 0.00 36.89 3.09
3462 3675 3.583228 TCTGAGGTGGGTTTTGTCTAGA 58.417 45.455 0.00 0.00 0.00 2.43
3470 3683 3.072476 TGGGTTTTGTCTAGAACTCCCTG 59.928 47.826 15.73 0.00 35.20 4.45
3477 3690 3.100671 GTCTAGAACTCCCTGTCACCAT 58.899 50.000 0.00 0.00 0.00 3.55
3483 3696 0.038744 CTCCCTGTCACCATGCCTTT 59.961 55.000 0.00 0.00 0.00 3.11
3507 3720 0.099968 CCGAGAAATGGCATGCACAG 59.900 55.000 21.36 2.40 0.00 3.66
3509 3722 0.179119 GAGAAATGGCATGCACAGGC 60.179 55.000 21.36 5.50 41.68 4.85
3524 3737 1.338389 ACAGGCCATGAATTTTGCAGC 60.338 47.619 5.01 0.00 0.00 5.25
3545 3758 2.287547 CCTTGTTGTTTCCGTGGACATG 60.288 50.000 0.00 0.00 0.00 3.21
3594 3807 0.882927 TGGGGAACGAGTTTTGCGAG 60.883 55.000 0.00 0.00 0.00 5.03
3677 3890 4.033709 AGTAGAACCTGGCTCATGTGTAT 58.966 43.478 0.00 0.00 0.00 2.29
3692 3905 5.414454 TCATGTGTATTTGGCTGAGTAAACC 59.586 40.000 0.00 0.00 0.00 3.27
3701 3914 1.160137 CTGAGTAAACCTGTGGCAGC 58.840 55.000 0.00 0.00 0.00 5.25
3702 3915 0.764890 TGAGTAAACCTGTGGCAGCT 59.235 50.000 0.00 0.00 0.00 4.24
3757 3970 5.240183 TGCTATATGGTACGGTCTTGAGTAC 59.760 44.000 0.00 0.00 41.64 2.73
3772 3985 0.102481 AGTACGCGCCTGTTATGGAG 59.898 55.000 5.73 0.00 0.00 3.86
3837 4155 4.835284 TGATGTTGCTTGGGTACTGATA 57.165 40.909 0.00 0.00 0.00 2.15
3841 4163 6.936335 TGATGTTGCTTGGGTACTGATATATG 59.064 38.462 0.00 0.00 0.00 1.78
3847 4169 7.168219 TGCTTGGGTACTGATATATGAATTCC 58.832 38.462 2.27 0.00 0.00 3.01
3859 4181 2.074729 TGAATTCCGGGGTTGTTGTT 57.925 45.000 0.00 0.00 0.00 2.83
3860 4182 2.389715 TGAATTCCGGGGTTGTTGTTT 58.610 42.857 0.00 0.00 0.00 2.83
3861 4183 3.563223 TGAATTCCGGGGTTGTTGTTTA 58.437 40.909 0.00 0.00 0.00 2.01
3864 4186 5.773680 TGAATTCCGGGGTTGTTGTTTATTA 59.226 36.000 0.00 0.00 0.00 0.98
3865 4187 6.437793 TGAATTCCGGGGTTGTTGTTTATTAT 59.562 34.615 0.00 0.00 0.00 1.28
3866 4188 6.860790 ATTCCGGGGTTGTTGTTTATTATT 57.139 33.333 0.00 0.00 0.00 1.40
3867 4189 5.646577 TCCGGGGTTGTTGTTTATTATTG 57.353 39.130 0.00 0.00 0.00 1.90
3910 4232 4.826733 TGAAAAGAAAAGGCAGATACAGCA 59.173 37.500 0.00 0.00 0.00 4.41
3928 4250 2.162681 GCAGGTATCAGCCAGTTGTTT 58.837 47.619 0.00 0.00 0.00 2.83
3932 4254 2.228822 GGTATCAGCCAGTTGTTTGGTG 59.771 50.000 0.00 0.00 40.49 4.17
3940 4262 2.292016 CCAGTTGTTTGGTGCGTTGATA 59.708 45.455 0.00 0.00 33.38 2.15
3962 4284 1.777101 GCATGTAAAAGGCGTGCAAA 58.223 45.000 4.83 0.00 45.32 3.68
3963 4285 2.131183 GCATGTAAAAGGCGTGCAAAA 58.869 42.857 4.83 0.00 45.32 2.44
3968 4290 4.233789 TGTAAAAGGCGTGCAAAATGATC 58.766 39.130 0.00 0.00 0.00 2.92
3989 4311 5.791336 TCACATATCGCACTAGGAAAGAT 57.209 39.130 0.00 0.00 0.00 2.40
4050 4376 2.732282 CGTGAAAGAGAGCAGCGATGTA 60.732 50.000 1.22 0.00 0.00 2.29
4051 4377 3.452474 GTGAAAGAGAGCAGCGATGTAT 58.548 45.455 1.22 0.00 0.00 2.29
4052 4378 4.611943 GTGAAAGAGAGCAGCGATGTATA 58.388 43.478 1.22 0.00 0.00 1.47
4053 4379 4.679197 GTGAAAGAGAGCAGCGATGTATAG 59.321 45.833 1.22 0.00 0.00 1.31
4054 4380 4.339530 TGAAAGAGAGCAGCGATGTATAGT 59.660 41.667 1.22 0.00 0.00 2.12
4055 4381 4.927978 AAGAGAGCAGCGATGTATAGTT 57.072 40.909 1.22 0.00 0.00 2.24
4056 4382 4.927978 AGAGAGCAGCGATGTATAGTTT 57.072 40.909 1.22 0.00 0.00 2.66
4057 4383 4.865776 AGAGAGCAGCGATGTATAGTTTC 58.134 43.478 1.22 0.00 0.00 2.78
4058 4384 4.582656 AGAGAGCAGCGATGTATAGTTTCT 59.417 41.667 1.22 0.00 0.00 2.52
4059 4385 5.068460 AGAGAGCAGCGATGTATAGTTTCTT 59.932 40.000 1.22 0.00 0.00 2.52
4060 4386 5.046529 AGAGCAGCGATGTATAGTTTCTTG 58.953 41.667 1.22 0.00 0.00 3.02
4061 4387 4.759782 AGCAGCGATGTATAGTTTCTTGT 58.240 39.130 1.22 0.00 0.00 3.16
4062 4388 5.902681 AGCAGCGATGTATAGTTTCTTGTA 58.097 37.500 1.22 0.00 0.00 2.41
4063 4389 6.338146 AGCAGCGATGTATAGTTTCTTGTAA 58.662 36.000 1.22 0.00 0.00 2.41
4064 4390 6.255887 AGCAGCGATGTATAGTTTCTTGTAAC 59.744 38.462 1.22 0.00 0.00 2.50
4065 4391 6.035650 GCAGCGATGTATAGTTTCTTGTAACA 59.964 38.462 1.22 0.00 0.00 2.41
4066 4392 7.391786 CAGCGATGTATAGTTTCTTGTAACAC 58.608 38.462 0.00 0.00 0.00 3.32
4067 4393 6.534079 AGCGATGTATAGTTTCTTGTAACACC 59.466 38.462 0.00 0.00 0.00 4.16
4068 4394 6.534079 GCGATGTATAGTTTCTTGTAACACCT 59.466 38.462 0.00 0.00 0.00 4.00
4069 4395 7.464178 GCGATGTATAGTTTCTTGTAACACCTG 60.464 40.741 0.00 0.00 0.00 4.00
4070 4396 7.758076 CGATGTATAGTTTCTTGTAACACCTGA 59.242 37.037 0.00 0.00 0.00 3.86
4071 4397 9.431887 GATGTATAGTTTCTTGTAACACCTGAA 57.568 33.333 0.00 0.00 0.00 3.02
4072 4398 8.827177 TGTATAGTTTCTTGTAACACCTGAAG 57.173 34.615 0.00 0.00 0.00 3.02
4073 4399 8.426489 TGTATAGTTTCTTGTAACACCTGAAGT 58.574 33.333 0.00 0.00 0.00 3.01
4074 4400 7.964604 ATAGTTTCTTGTAACACCTGAAGTC 57.035 36.000 0.00 0.00 0.00 3.01
4075 4401 5.741011 AGTTTCTTGTAACACCTGAAGTCA 58.259 37.500 0.00 0.00 0.00 3.41
4076 4402 6.357367 AGTTTCTTGTAACACCTGAAGTCAT 58.643 36.000 0.00 0.00 0.00 3.06
4077 4403 6.260936 AGTTTCTTGTAACACCTGAAGTCATG 59.739 38.462 0.00 0.00 0.00 3.07
4078 4404 5.545063 TCTTGTAACACCTGAAGTCATGA 57.455 39.130 0.00 0.00 0.00 3.07
4079 4405 5.541845 TCTTGTAACACCTGAAGTCATGAG 58.458 41.667 0.00 0.00 0.00 2.90
4080 4406 4.955811 TGTAACACCTGAAGTCATGAGT 57.044 40.909 0.00 0.00 0.00 3.41
4081 4407 6.266786 TCTTGTAACACCTGAAGTCATGAGTA 59.733 38.462 2.79 0.00 0.00 2.59
4082 4408 6.025749 TGTAACACCTGAAGTCATGAGTAG 57.974 41.667 2.79 0.00 0.00 2.57
4083 4409 5.773176 TGTAACACCTGAAGTCATGAGTAGA 59.227 40.000 2.79 0.00 0.00 2.59
4084 4410 6.437477 TGTAACACCTGAAGTCATGAGTAGAT 59.563 38.462 2.79 0.00 0.00 1.98
4085 4411 7.614192 TGTAACACCTGAAGTCATGAGTAGATA 59.386 37.037 2.79 0.00 0.00 1.98
4086 4412 6.458232 ACACCTGAAGTCATGAGTAGATAC 57.542 41.667 2.79 0.00 0.00 2.24
4087 4413 5.361285 ACACCTGAAGTCATGAGTAGATACC 59.639 44.000 2.79 0.00 0.00 2.73
4088 4414 5.596361 CACCTGAAGTCATGAGTAGATACCT 59.404 44.000 2.79 0.00 0.00 3.08
4089 4415 5.830991 ACCTGAAGTCATGAGTAGATACCTC 59.169 44.000 2.79 0.00 0.00 3.85
4090 4416 6.068010 CCTGAAGTCATGAGTAGATACCTCT 58.932 44.000 2.79 0.00 35.39 3.69
4091 4417 6.016360 CCTGAAGTCATGAGTAGATACCTCTG 60.016 46.154 2.79 0.41 32.66 3.35
4092 4418 5.300539 TGAAGTCATGAGTAGATACCTCTGC 59.699 44.000 2.79 0.00 34.59 4.26
4093 4419 5.060427 AGTCATGAGTAGATACCTCTGCT 57.940 43.478 0.00 0.00 45.85 4.24
4104 4430 1.356124 ACCTCTGCTCTGTCCATGTT 58.644 50.000 0.00 0.00 0.00 2.71
4139 4538 1.441016 CACTGCGCGCTTTCCTTTC 60.441 57.895 33.29 0.00 0.00 2.62
4140 4539 2.176792 CTGCGCGCTTTCCTTTCC 59.823 61.111 33.29 0.00 0.00 3.13
4141 4540 2.281484 TGCGCGCTTTCCTTTCCT 60.281 55.556 33.29 0.00 0.00 3.36
4142 4541 1.856265 CTGCGCGCTTTCCTTTCCTT 61.856 55.000 33.29 0.00 0.00 3.36
4143 4542 1.285950 GCGCGCTTTCCTTTCCTTT 59.714 52.632 26.67 0.00 0.00 3.11
4187 4588 1.668419 GACAGCCTTGTGTCTTGTGT 58.332 50.000 0.00 0.00 43.10 3.72
4188 4589 1.331756 GACAGCCTTGTGTCTTGTGTG 59.668 52.381 0.00 0.00 43.10 3.82
4190 4591 0.255890 AGCCTTGTGTCTTGTGTGGT 59.744 50.000 0.00 0.00 0.00 4.16
4191 4592 0.381801 GCCTTGTGTCTTGTGTGGTG 59.618 55.000 0.00 0.00 0.00 4.17
4192 4593 1.024271 CCTTGTGTCTTGTGTGGTGG 58.976 55.000 0.00 0.00 0.00 4.61
4193 4594 0.381801 CTTGTGTCTTGTGTGGTGGC 59.618 55.000 0.00 0.00 0.00 5.01
4194 4595 0.322906 TTGTGTCTTGTGTGGTGGCA 60.323 50.000 0.00 0.00 0.00 4.92
4195 4596 0.106769 TGTGTCTTGTGTGGTGGCAT 60.107 50.000 0.00 0.00 0.00 4.40
4196 4597 0.593128 GTGTCTTGTGTGGTGGCATC 59.407 55.000 0.00 0.00 0.00 3.91
4197 4598 0.182299 TGTCTTGTGTGGTGGCATCA 59.818 50.000 0.00 0.00 0.00 3.07
4198 4599 0.877071 GTCTTGTGTGGTGGCATCAG 59.123 55.000 0.00 0.00 0.00 2.90
4199 4600 0.890542 TCTTGTGTGGTGGCATCAGC 60.891 55.000 0.00 0.00 41.42 4.26
4288 4722 3.194542 AGGCAGAAGAAGCACACTAGTAG 59.805 47.826 0.00 0.00 0.00 2.57
4301 4735 3.119459 ACACTAGTAGGATGCAAGTGACG 60.119 47.826 17.08 0.00 39.93 4.35
4323 4757 3.479370 CGCTTCCTGGAGAAAGCG 58.521 61.111 22.35 22.35 41.88 4.68
4409 4844 4.185467 ACTACATGGATCATCGATCTGC 57.815 45.455 0.00 0.00 38.91 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 8.231837 GCAAACATGCATGAAAATTTACATTCT 58.768 29.630 32.75 2.07 34.41 2.40
21 22 8.016229 TGCAAACATGCATGAAAATTTACATTC 58.984 29.630 32.75 10.02 40.23 2.67
22 23 7.872881 TGCAAACATGCATGAAAATTTACATT 58.127 26.923 32.75 9.72 40.23 2.71
23 24 7.436430 TGCAAACATGCATGAAAATTTACAT 57.564 28.000 32.75 3.33 40.23 2.29
24 25 6.856135 TGCAAACATGCATGAAAATTTACA 57.144 29.167 32.75 18.89 40.23 2.41
39 40 4.953940 AACCACCTTAACATGCAAACAT 57.046 36.364 0.00 0.00 36.79 2.71
40 41 4.744795 AAACCACCTTAACATGCAAACA 57.255 36.364 0.00 0.00 0.00 2.83
71 72 0.819582 GACCCCAACATGCAATCCTG 59.180 55.000 0.00 0.00 0.00 3.86
72 73 0.680921 CGACCCCAACATGCAATCCT 60.681 55.000 0.00 0.00 0.00 3.24
73 74 0.679640 TCGACCCCAACATGCAATCC 60.680 55.000 0.00 0.00 0.00 3.01
74 75 0.451783 GTCGACCCCAACATGCAATC 59.548 55.000 3.51 0.00 0.00 2.67
75 76 0.251121 TGTCGACCCCAACATGCAAT 60.251 50.000 14.12 0.00 0.00 3.56
76 77 0.251121 ATGTCGACCCCAACATGCAA 60.251 50.000 14.12 0.00 34.88 4.08
77 78 0.251121 AATGTCGACCCCAACATGCA 60.251 50.000 14.12 0.00 36.28 3.96
78 79 0.887933 AAATGTCGACCCCAACATGC 59.112 50.000 14.12 0.00 36.28 4.06
79 80 2.436417 AGAAATGTCGACCCCAACATG 58.564 47.619 14.12 0.00 36.28 3.21
80 81 2.879103 AGAAATGTCGACCCCAACAT 57.121 45.000 14.12 0.00 37.71 2.71
81 82 2.649531 AAGAAATGTCGACCCCAACA 57.350 45.000 14.12 0.00 0.00 3.33
82 83 5.644636 TGTATTAAGAAATGTCGACCCCAAC 59.355 40.000 14.12 1.04 0.00 3.77
83 84 5.806818 TGTATTAAGAAATGTCGACCCCAA 58.193 37.500 14.12 0.00 0.00 4.12
84 85 5.423704 TGTATTAAGAAATGTCGACCCCA 57.576 39.130 14.12 0.00 0.00 4.96
85 86 5.820947 ACATGTATTAAGAAATGTCGACCCC 59.179 40.000 14.12 0.00 0.00 4.95
86 87 6.920569 ACATGTATTAAGAAATGTCGACCC 57.079 37.500 14.12 0.00 0.00 4.46
100 101 9.634021 TGCCACCTTATCATTTAACATGTATTA 57.366 29.630 0.00 0.00 0.00 0.98
101 102 8.532186 TGCCACCTTATCATTTAACATGTATT 57.468 30.769 0.00 0.00 0.00 1.89
102 103 8.710749 ATGCCACCTTATCATTTAACATGTAT 57.289 30.769 0.00 0.00 0.00 2.29
103 104 9.062524 GTATGCCACCTTATCATTTAACATGTA 57.937 33.333 0.00 0.00 0.00 2.29
104 105 7.779798 AGTATGCCACCTTATCATTTAACATGT 59.220 33.333 0.00 0.00 0.00 3.21
105 106 8.169977 AGTATGCCACCTTATCATTTAACATG 57.830 34.615 0.00 0.00 0.00 3.21
106 107 8.632679 CAAGTATGCCACCTTATCATTTAACAT 58.367 33.333 0.00 0.00 0.00 2.71
107 108 7.995289 CAAGTATGCCACCTTATCATTTAACA 58.005 34.615 0.00 0.00 0.00 2.41
125 126 8.072567 GCCTATTTCTCTTAACATGCAAGTATG 58.927 37.037 0.00 0.00 0.00 2.39
126 127 7.995488 AGCCTATTTCTCTTAACATGCAAGTAT 59.005 33.333 0.00 0.00 0.00 2.12
127 128 7.338710 AGCCTATTTCTCTTAACATGCAAGTA 58.661 34.615 0.00 0.00 0.00 2.24
128 129 6.183347 AGCCTATTTCTCTTAACATGCAAGT 58.817 36.000 0.00 0.00 0.00 3.16
129 130 6.690194 AGCCTATTTCTCTTAACATGCAAG 57.310 37.500 0.00 0.00 0.00 4.01
130 131 6.260936 GCTAGCCTATTTCTCTTAACATGCAA 59.739 38.462 2.29 0.00 0.00 4.08
131 132 5.760253 GCTAGCCTATTTCTCTTAACATGCA 59.240 40.000 2.29 0.00 0.00 3.96
132 133 5.760253 TGCTAGCCTATTTCTCTTAACATGC 59.240 40.000 13.29 0.00 0.00 4.06
133 134 7.792374 TTGCTAGCCTATTTCTCTTAACATG 57.208 36.000 13.29 0.00 0.00 3.21
134 135 7.500559 CCTTTGCTAGCCTATTTCTCTTAACAT 59.499 37.037 13.29 0.00 0.00 2.71
135 136 6.823689 CCTTTGCTAGCCTATTTCTCTTAACA 59.176 38.462 13.29 0.00 0.00 2.41
136 137 6.238511 GCCTTTGCTAGCCTATTTCTCTTAAC 60.239 42.308 13.29 0.00 33.53 2.01
137 138 5.823045 GCCTTTGCTAGCCTATTTCTCTTAA 59.177 40.000 13.29 0.00 33.53 1.85
138 139 5.104527 TGCCTTTGCTAGCCTATTTCTCTTA 60.105 40.000 13.29 0.00 38.71 2.10
139 140 4.203226 GCCTTTGCTAGCCTATTTCTCTT 58.797 43.478 13.29 0.00 33.53 2.85
140 141 3.200825 TGCCTTTGCTAGCCTATTTCTCT 59.799 43.478 13.29 0.00 38.71 3.10
141 142 3.545703 TGCCTTTGCTAGCCTATTTCTC 58.454 45.455 13.29 0.00 38.71 2.87
142 143 3.652057 TGCCTTTGCTAGCCTATTTCT 57.348 42.857 13.29 0.00 38.71 2.52
143 144 4.158579 AGTTTGCCTTTGCTAGCCTATTTC 59.841 41.667 13.29 0.00 38.71 2.17
144 145 4.089361 AGTTTGCCTTTGCTAGCCTATTT 58.911 39.130 13.29 0.00 38.71 1.40
145 146 3.701664 AGTTTGCCTTTGCTAGCCTATT 58.298 40.909 13.29 0.00 38.71 1.73
146 147 3.372440 AGTTTGCCTTTGCTAGCCTAT 57.628 42.857 13.29 0.00 38.71 2.57
147 148 2.879103 AGTTTGCCTTTGCTAGCCTA 57.121 45.000 13.29 0.00 38.71 3.93
148 149 2.879103 TAGTTTGCCTTTGCTAGCCT 57.121 45.000 13.29 0.70 38.71 4.58
149 150 4.456280 AAATAGTTTGCCTTTGCTAGCC 57.544 40.909 13.29 0.00 38.71 3.93
150 151 6.436843 TCTAAATAGTTTGCCTTTGCTAGC 57.563 37.500 8.10 8.10 38.71 3.42
169 170 9.692749 CAACGGTGCTTATCTTTCTATATCTAA 57.307 33.333 0.00 0.00 0.00 2.10
213 214 8.387599 GCTTAGGGAAGGTGTTTAGAGAAACAA 61.388 40.741 4.89 0.00 43.19 2.83
214 215 6.966884 GCTTAGGGAAGGTGTTTAGAGAAACA 60.967 42.308 0.00 0.00 41.49 2.83
215 216 5.411977 GCTTAGGGAAGGTGTTTAGAGAAAC 59.588 44.000 0.00 0.00 38.25 2.78
216 217 5.072600 TGCTTAGGGAAGGTGTTTAGAGAAA 59.927 40.000 0.00 0.00 32.84 2.52
217 218 4.595781 TGCTTAGGGAAGGTGTTTAGAGAA 59.404 41.667 0.00 0.00 32.84 2.87
218 219 4.020485 GTGCTTAGGGAAGGTGTTTAGAGA 60.020 45.833 0.00 0.00 32.84 3.10
219 220 4.254492 GTGCTTAGGGAAGGTGTTTAGAG 58.746 47.826 0.00 0.00 32.84 2.43
220 221 3.008704 GGTGCTTAGGGAAGGTGTTTAGA 59.991 47.826 0.00 0.00 32.84 2.10
221 222 3.009143 AGGTGCTTAGGGAAGGTGTTTAG 59.991 47.826 0.00 0.00 32.84 1.85
222 223 2.983898 AGGTGCTTAGGGAAGGTGTTTA 59.016 45.455 0.00 0.00 32.84 2.01
223 224 1.780919 AGGTGCTTAGGGAAGGTGTTT 59.219 47.619 0.00 0.00 32.84 2.83
224 225 1.446016 AGGTGCTTAGGGAAGGTGTT 58.554 50.000 0.00 0.00 32.84 3.32
225 226 1.073923 CAAGGTGCTTAGGGAAGGTGT 59.926 52.381 0.00 0.00 32.84 4.16
226 227 1.826385 CAAGGTGCTTAGGGAAGGTG 58.174 55.000 0.00 0.00 32.84 4.00
227 228 0.038310 GCAAGGTGCTTAGGGAAGGT 59.962 55.000 0.00 0.00 40.96 3.50
228 229 0.038166 TGCAAGGTGCTTAGGGAAGG 59.962 55.000 1.43 0.00 45.31 3.46
229 230 2.134789 ATGCAAGGTGCTTAGGGAAG 57.865 50.000 0.00 0.00 45.31 3.46
230 231 2.170166 CAATGCAAGGTGCTTAGGGAA 58.830 47.619 0.00 0.00 45.31 3.97
231 232 1.075374 ACAATGCAAGGTGCTTAGGGA 59.925 47.619 0.00 0.00 45.31 4.20
232 233 1.549203 ACAATGCAAGGTGCTTAGGG 58.451 50.000 0.00 0.00 45.31 3.53
233 234 2.684881 CCTACAATGCAAGGTGCTTAGG 59.315 50.000 0.00 3.34 45.31 2.69
234 235 3.609853 TCCTACAATGCAAGGTGCTTAG 58.390 45.455 2.14 0.00 45.31 2.18
235 236 3.609853 CTCCTACAATGCAAGGTGCTTA 58.390 45.455 2.14 0.00 45.31 3.09
236 237 2.440409 CTCCTACAATGCAAGGTGCTT 58.560 47.619 2.14 0.00 45.31 3.91
237 238 1.340405 CCTCCTACAATGCAAGGTGCT 60.340 52.381 2.14 0.00 45.31 4.40
238 239 1.098050 CCTCCTACAATGCAAGGTGC 58.902 55.000 2.14 0.00 45.29 5.01
239 240 1.098050 GCCTCCTACAATGCAAGGTG 58.902 55.000 2.14 0.14 34.30 4.00
240 241 0.034089 GGCCTCCTACAATGCAAGGT 60.034 55.000 0.00 0.63 34.30 3.50
241 242 0.257039 AGGCCTCCTACAATGCAAGG 59.743 55.000 0.00 0.00 28.47 3.61
242 243 3.209410 CTTAGGCCTCCTACAATGCAAG 58.791 50.000 9.68 0.00 35.63 4.01
243 244 2.683742 GCTTAGGCCTCCTACAATGCAA 60.684 50.000 9.68 0.00 35.63 4.08
244 245 1.134098 GCTTAGGCCTCCTACAATGCA 60.134 52.381 9.68 0.00 35.63 3.96
245 246 1.598882 GCTTAGGCCTCCTACAATGC 58.401 55.000 9.68 0.00 35.63 3.56
246 247 1.871080 CGCTTAGGCCTCCTACAATG 58.129 55.000 9.68 0.00 35.63 2.82
247 248 0.106894 GCGCTTAGGCCTCCTACAAT 59.893 55.000 9.68 0.00 35.63 2.71
248 249 1.520666 GCGCTTAGGCCTCCTACAA 59.479 57.895 9.68 0.00 35.63 2.41
249 250 3.217231 GCGCTTAGGCCTCCTACA 58.783 61.111 9.68 0.00 35.63 2.74
257 258 1.675552 TTCCTATTTGGCGCTTAGGC 58.324 50.000 7.64 0.00 46.95 3.93
258 259 3.550842 GCATTTCCTATTTGGCGCTTAGG 60.551 47.826 7.64 12.93 34.92 2.69
259 260 3.550842 GGCATTTCCTATTTGGCGCTTAG 60.551 47.826 7.64 3.89 35.26 2.18
260 261 2.360801 GGCATTTCCTATTTGGCGCTTA 59.639 45.455 7.64 0.00 35.26 3.09
261 262 1.136891 GGCATTTCCTATTTGGCGCTT 59.863 47.619 7.64 0.00 35.26 4.68
262 263 0.746659 GGCATTTCCTATTTGGCGCT 59.253 50.000 7.64 0.00 35.26 5.92
263 264 0.459489 TGGCATTTCCTATTTGGCGC 59.541 50.000 0.00 0.00 38.65 6.53
264 265 1.536709 GCTGGCATTTCCTATTTGGCG 60.537 52.381 0.00 0.00 38.65 5.69
265 266 1.758862 AGCTGGCATTTCCTATTTGGC 59.241 47.619 0.00 0.00 36.55 4.52
266 267 3.294214 AGAGCTGGCATTTCCTATTTGG 58.706 45.455 0.00 0.00 35.26 3.28
267 268 4.679662 CAAGAGCTGGCATTTCCTATTTG 58.320 43.478 0.00 0.00 35.26 2.32
268 269 3.131755 GCAAGAGCTGGCATTTCCTATTT 59.868 43.478 0.00 0.00 37.91 1.40
269 270 2.692041 GCAAGAGCTGGCATTTCCTATT 59.308 45.455 0.00 0.00 37.91 1.73
270 271 2.305009 GCAAGAGCTGGCATTTCCTAT 58.695 47.619 0.00 0.00 37.91 2.57
271 272 1.755179 GCAAGAGCTGGCATTTCCTA 58.245 50.000 0.00 0.00 37.91 2.94
272 273 1.310933 CGCAAGAGCTGGCATTTCCT 61.311 55.000 0.00 0.00 43.02 3.36
273 274 1.138247 CGCAAGAGCTGGCATTTCC 59.862 57.895 0.00 0.00 43.02 3.13
274 275 1.515736 GCGCAAGAGCTGGCATTTC 60.516 57.895 0.30 0.00 43.02 2.17
275 276 2.570181 GCGCAAGAGCTGGCATTT 59.430 55.556 0.30 0.00 43.02 2.32
283 284 3.497932 CTGGAGCAGCGCAAGAGC 61.498 66.667 11.47 8.22 43.02 4.09
284 285 2.818714 CCTGGAGCAGCGCAAGAG 60.819 66.667 11.47 0.00 43.02 2.85
302 303 1.870993 GCAACAAAGCTGGCCTTTCAG 60.871 52.381 3.32 0.00 41.75 3.02
303 304 0.104671 GCAACAAAGCTGGCCTTTCA 59.895 50.000 3.32 0.00 41.75 2.69
304 305 0.601046 GGCAACAAAGCTGGCCTTTC 60.601 55.000 3.32 0.00 41.75 2.62
305 306 1.447217 GGCAACAAAGCTGGCCTTT 59.553 52.632 3.32 0.00 44.45 3.11
306 307 3.141449 GGCAACAAAGCTGGCCTT 58.859 55.556 3.32 0.00 43.09 4.35
308 309 2.202395 TGAGGCAACAAAGCTGGCC 61.202 57.895 0.00 0.00 46.77 5.36
309 310 1.006922 GTGAGGCAACAAAGCTGGC 60.007 57.895 0.00 0.00 39.56 4.85
310 311 1.537202 GTAGTGAGGCAACAAAGCTGG 59.463 52.381 0.00 0.00 41.41 4.85
311 312 1.537202 GGTAGTGAGGCAACAAAGCTG 59.463 52.381 0.00 0.00 41.41 4.24
312 313 1.142870 TGGTAGTGAGGCAACAAAGCT 59.857 47.619 0.00 0.00 41.41 3.74
313 314 1.266989 GTGGTAGTGAGGCAACAAAGC 59.733 52.381 0.00 0.00 41.41 3.51
314 315 1.880027 GGTGGTAGTGAGGCAACAAAG 59.120 52.381 0.00 0.00 41.41 2.77
315 316 1.812324 CGGTGGTAGTGAGGCAACAAA 60.812 52.381 0.00 0.00 41.41 2.83
316 317 0.250124 CGGTGGTAGTGAGGCAACAA 60.250 55.000 0.00 0.00 41.41 2.83
317 318 1.369692 CGGTGGTAGTGAGGCAACA 59.630 57.895 0.00 0.00 41.41 3.33
318 319 1.375523 CCGGTGGTAGTGAGGCAAC 60.376 63.158 0.00 0.00 0.00 4.17
319 320 2.589157 CCCGGTGGTAGTGAGGCAA 61.589 63.158 0.00 0.00 0.00 4.52
320 321 3.000819 CCCGGTGGTAGTGAGGCA 61.001 66.667 0.00 0.00 0.00 4.75
321 322 4.468689 GCCCGGTGGTAGTGAGGC 62.469 72.222 0.00 0.00 0.00 4.70
322 323 3.782443 GGCCCGGTGGTAGTGAGG 61.782 72.222 0.00 0.00 0.00 3.86
323 324 4.143333 CGGCCCGGTGGTAGTGAG 62.143 72.222 0.00 0.00 0.00 3.51
327 328 4.910585 GATGCGGCCCGGTGGTAG 62.911 72.222 4.77 0.00 0.00 3.18
349 350 2.520260 GCCTGGCAGCCCATTAGG 60.520 66.667 15.17 10.27 41.21 2.69
379 380 0.035458 AGAGACAGAAAGCCGTTGGG 59.965 55.000 0.00 0.00 0.00 4.12
380 381 1.433534 GAGAGACAGAAAGCCGTTGG 58.566 55.000 0.00 0.00 0.00 3.77
381 382 1.063806 CGAGAGACAGAAAGCCGTTG 58.936 55.000 0.00 0.00 0.00 4.10
382 383 0.038159 CCGAGAGACAGAAAGCCGTT 60.038 55.000 0.00 0.00 0.00 4.44
383 384 1.179814 ACCGAGAGACAGAAAGCCGT 61.180 55.000 0.00 0.00 0.00 5.68
384 385 0.038159 AACCGAGAGACAGAAAGCCG 60.038 55.000 0.00 0.00 0.00 5.52
385 386 1.273886 AGAACCGAGAGACAGAAAGCC 59.726 52.381 0.00 0.00 0.00 4.35
386 387 2.734276 AGAACCGAGAGACAGAAAGC 57.266 50.000 0.00 0.00 0.00 3.51
387 388 3.238441 CGAAGAACCGAGAGACAGAAAG 58.762 50.000 0.00 0.00 0.00 2.62
388 389 2.030185 CCGAAGAACCGAGAGACAGAAA 60.030 50.000 0.00 0.00 0.00 2.52
389 390 1.540267 CCGAAGAACCGAGAGACAGAA 59.460 52.381 0.00 0.00 0.00 3.02
390 391 1.166129 CCGAAGAACCGAGAGACAGA 58.834 55.000 0.00 0.00 0.00 3.41
391 392 0.171455 CCCGAAGAACCGAGAGACAG 59.829 60.000 0.00 0.00 0.00 3.51
392 393 0.538977 ACCCGAAGAACCGAGAGACA 60.539 55.000 0.00 0.00 0.00 3.41
393 394 0.602060 AACCCGAAGAACCGAGAGAC 59.398 55.000 0.00 0.00 0.00 3.36
394 395 0.601558 CAACCCGAAGAACCGAGAGA 59.398 55.000 0.00 0.00 0.00 3.10
395 396 0.389948 CCAACCCGAAGAACCGAGAG 60.390 60.000 0.00 0.00 0.00 3.20
396 397 1.117142 ACCAACCCGAAGAACCGAGA 61.117 55.000 0.00 0.00 0.00 4.04
397 398 0.250166 AACCAACCCGAAGAACCGAG 60.250 55.000 0.00 0.00 0.00 4.63
398 399 0.249996 GAACCAACCCGAAGAACCGA 60.250 55.000 0.00 0.00 0.00 4.69
399 400 1.562575 CGAACCAACCCGAAGAACCG 61.563 60.000 0.00 0.00 0.00 4.44
400 401 1.848932 GCGAACCAACCCGAAGAACC 61.849 60.000 0.00 0.00 0.00 3.62
401 402 1.572941 GCGAACCAACCCGAAGAAC 59.427 57.895 0.00 0.00 0.00 3.01
402 403 1.957186 CGCGAACCAACCCGAAGAA 60.957 57.895 0.00 0.00 0.00 2.52
403 404 2.356553 CGCGAACCAACCCGAAGA 60.357 61.111 0.00 0.00 0.00 2.87
404 405 1.957186 TTCGCGAACCAACCCGAAG 60.957 57.895 19.38 0.00 35.12 3.79
405 406 2.108566 TTCGCGAACCAACCCGAA 59.891 55.556 19.38 0.00 37.36 4.30
406 407 2.662527 GTTCGCGAACCAACCCGA 60.663 61.111 35.88 3.73 35.36 5.14
407 408 2.950172 CTGTTCGCGAACCAACCCG 61.950 63.158 40.08 21.50 40.46 5.28
408 409 2.613506 CCTGTTCGCGAACCAACCC 61.614 63.158 40.08 21.19 40.46 4.11
409 410 2.943653 CCTGTTCGCGAACCAACC 59.056 61.111 40.08 21.87 40.46 3.77
410 411 2.251371 GCCTGTTCGCGAACCAAC 59.749 61.111 40.08 27.75 40.46 3.77
411 412 2.975799 GGCCTGTTCGCGAACCAA 60.976 61.111 40.08 26.16 40.46 3.67
414 415 4.072088 CACGGCCTGTTCGCGAAC 62.072 66.667 38.12 38.12 41.50 3.95
415 416 4.287781 TCACGGCCTGTTCGCGAA 62.288 61.111 19.38 19.38 0.00 4.70
418 419 4.980805 TGGTCACGGCCTGTTCGC 62.981 66.667 0.00 0.00 0.00 4.70
419 420 2.738521 CTGGTCACGGCCTGTTCG 60.739 66.667 0.00 0.00 0.00 3.95
420 421 3.050275 GCTGGTCACGGCCTGTTC 61.050 66.667 0.00 0.00 43.36 3.18
427 428 0.588252 CACAAGAAAGCTGGTCACGG 59.412 55.000 0.00 0.00 0.00 4.94
428 429 0.040958 GCACAAGAAAGCTGGTCACG 60.041 55.000 0.00 0.00 0.00 4.35
429 430 0.312102 GGCACAAGAAAGCTGGTCAC 59.688 55.000 0.00 0.00 0.00 3.67
430 431 1.165907 CGGCACAAGAAAGCTGGTCA 61.166 55.000 0.00 0.00 33.53 4.02
431 432 1.576421 CGGCACAAGAAAGCTGGTC 59.424 57.895 0.00 0.00 33.53 4.02
432 433 2.555547 GCGGCACAAGAAAGCTGGT 61.556 57.895 0.00 0.00 37.60 4.00
433 434 2.256461 GCGGCACAAGAAAGCTGG 59.744 61.111 0.00 0.00 37.60 4.85
434 435 2.256461 GGCGGCACAAGAAAGCTG 59.744 61.111 3.07 0.00 40.08 4.24
435 436 2.985847 GGGCGGCACAAGAAAGCT 60.986 61.111 12.47 0.00 0.00 3.74
436 437 4.404654 CGGGCGGCACAAGAAAGC 62.405 66.667 12.47 0.00 0.00 3.51
437 438 2.070654 AAACGGGCGGCACAAGAAAG 62.071 55.000 12.47 0.00 0.00 2.62
438 439 2.065906 GAAACGGGCGGCACAAGAAA 62.066 55.000 12.47 0.00 0.00 2.52
439 440 2.517402 AAACGGGCGGCACAAGAA 60.517 55.556 12.47 0.00 0.00 2.52
440 441 2.975799 GAAACGGGCGGCACAAGA 60.976 61.111 12.47 0.00 0.00 3.02
441 442 4.038080 GGAAACGGGCGGCACAAG 62.038 66.667 12.47 1.00 0.00 3.16
442 443 4.572571 AGGAAACGGGCGGCACAA 62.573 61.111 12.47 0.00 0.00 3.33
448 449 3.901797 AAGCAGGAGGAAACGGGCG 62.902 63.158 0.00 0.00 0.00 6.13
449 450 1.587043 GAAAGCAGGAGGAAACGGGC 61.587 60.000 0.00 0.00 0.00 6.13
450 451 0.960861 GGAAAGCAGGAGGAAACGGG 60.961 60.000 0.00 0.00 0.00 5.28
451 452 1.298859 CGGAAAGCAGGAGGAAACGG 61.299 60.000 0.00 0.00 0.00 4.44
452 453 0.602905 ACGGAAAGCAGGAGGAAACG 60.603 55.000 0.00 0.00 0.00 3.60
453 454 1.157585 GACGGAAAGCAGGAGGAAAC 58.842 55.000 0.00 0.00 0.00 2.78
454 455 0.036306 GGACGGAAAGCAGGAGGAAA 59.964 55.000 0.00 0.00 0.00 3.13
455 456 1.677552 GGACGGAAAGCAGGAGGAA 59.322 57.895 0.00 0.00 0.00 3.36
456 457 2.291043 GGGACGGAAAGCAGGAGGA 61.291 63.158 0.00 0.00 0.00 3.71
457 458 2.269241 GGGACGGAAAGCAGGAGG 59.731 66.667 0.00 0.00 0.00 4.30
458 459 2.245438 GAGGGGACGGAAAGCAGGAG 62.245 65.000 0.00 0.00 0.00 3.69
459 460 2.203938 AGGGGACGGAAAGCAGGA 60.204 61.111 0.00 0.00 0.00 3.86
460 461 1.842381 AAGAGGGGACGGAAAGCAGG 61.842 60.000 0.00 0.00 0.00 4.85
461 462 0.036875 AAAGAGGGGACGGAAAGCAG 59.963 55.000 0.00 0.00 0.00 4.24
462 463 0.036306 GAAAGAGGGGACGGAAAGCA 59.964 55.000 0.00 0.00 0.00 3.91
463 464 0.325272 AGAAAGAGGGGACGGAAAGC 59.675 55.000 0.00 0.00 0.00 3.51
464 465 1.066071 GGAGAAAGAGGGGACGGAAAG 60.066 57.143 0.00 0.00 0.00 2.62
465 466 0.981943 GGAGAAAGAGGGGACGGAAA 59.018 55.000 0.00 0.00 0.00 3.13
466 467 0.908180 GGGAGAAAGAGGGGACGGAA 60.908 60.000 0.00 0.00 0.00 4.30
467 468 1.305887 GGGAGAAAGAGGGGACGGA 60.306 63.158 0.00 0.00 0.00 4.69
468 469 2.368011 GGGGAGAAAGAGGGGACGG 61.368 68.421 0.00 0.00 0.00 4.79
469 470 2.368011 GGGGGAGAAAGAGGGGACG 61.368 68.421 0.00 0.00 0.00 4.79
470 471 3.742730 GGGGGAGAAAGAGGGGAC 58.257 66.667 0.00 0.00 0.00 4.46
899 900 1.623542 CCCTAGACGGAAAGTGGGGG 61.624 65.000 0.00 0.00 31.71 5.40
900 901 0.908180 ACCCTAGACGGAAAGTGGGG 60.908 60.000 0.00 0.00 37.77 4.96
901 902 0.981943 AACCCTAGACGGAAAGTGGG 59.018 55.000 0.00 0.00 38.99 4.61
902 903 2.812011 CAAAACCCTAGACGGAAAGTGG 59.188 50.000 0.00 0.00 33.16 4.00
903 904 2.225727 GCAAAACCCTAGACGGAAAGTG 59.774 50.000 0.00 0.00 33.16 3.16
904 905 2.105993 AGCAAAACCCTAGACGGAAAGT 59.894 45.455 0.00 0.00 33.16 2.66
995 996 4.451150 GCGTGCGGGACATCTCCA 62.451 66.667 0.00 0.00 38.52 3.86
1290 1303 2.593468 ATCCAGTCCAATCCACGGCG 62.593 60.000 4.80 4.80 0.00 6.46
1350 1363 0.247974 GCAGCAGCAACGATTAGCAG 60.248 55.000 0.00 0.00 41.58 4.24
1358 1371 1.656263 CACAACAGCAGCAGCAACG 60.656 57.895 3.17 0.00 45.49 4.10
1530 1543 2.102084 AGTGTATCTCGTGCATGATGCT 59.898 45.455 19.19 0.00 45.31 3.79
1599 1612 5.239351 GGTAGTACATATCGAGAGCAGAGA 58.761 45.833 2.06 0.00 0.00 3.10
1609 1622 6.039047 ACACACACTAAGGGTAGTACATATCG 59.961 42.308 2.06 0.00 38.58 2.92
1612 1625 6.012113 ACACACACACTAAGGGTAGTACATA 58.988 40.000 2.06 0.00 38.58 2.29
1613 1626 4.836736 ACACACACACTAAGGGTAGTACAT 59.163 41.667 2.06 0.00 38.58 2.29
1615 1628 4.553323 CACACACACACTAAGGGTAGTAC 58.447 47.826 0.00 0.00 38.58 2.73
1620 1633 0.531974 CGCACACACACACTAAGGGT 60.532 55.000 0.00 0.00 0.00 4.34
1629 1643 1.225991 CACACACACGCACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
1633 1647 1.060308 GACACACACACACGCACAC 59.940 57.895 0.00 0.00 0.00 3.82
1635 1649 1.497991 ATAGACACACACACACGCAC 58.502 50.000 0.00 0.00 0.00 5.34
1637 1651 8.959734 TTATATATATAGACACACACACACGC 57.040 34.615 2.76 0.00 0.00 5.34
1657 1671 8.924511 AAACAAATCGTGATCCTCCATTATAT 57.075 30.769 0.00 0.00 0.00 0.86
1658 1672 9.489084 CTAAACAAATCGTGATCCTCCATTATA 57.511 33.333 0.00 0.00 0.00 0.98
1659 1673 7.041098 GCTAAACAAATCGTGATCCTCCATTAT 60.041 37.037 0.00 0.00 0.00 1.28
1660 1674 6.260050 GCTAAACAAATCGTGATCCTCCATTA 59.740 38.462 0.00 0.00 0.00 1.90
1725 1739 3.006752 TGGCCTAAAGCAACATTTCCTTG 59.993 43.478 3.32 0.00 46.50 3.61
1728 1742 3.676291 TTGGCCTAAAGCAACATTTCC 57.324 42.857 3.32 0.00 46.50 3.13
1769 1787 0.622665 AGGAATCAGAAGGTGGGCTG 59.377 55.000 0.00 0.00 0.00 4.85
1832 1850 9.453572 AGTAAGATATCATCACTTCAAGCAAAA 57.546 29.630 5.32 0.00 0.00 2.44
1838 1856 7.648112 GCGTACAGTAAGATATCATCACTTCAA 59.352 37.037 5.32 0.00 0.00 2.69
1862 1880 6.005583 ACCAATGCAGATAATTAGATTGCG 57.994 37.500 11.60 0.00 37.58 4.85
1958 1976 6.295249 TCCGGAAAGATTATTCATATGCACA 58.705 36.000 0.00 0.00 0.00 4.57
1986 2004 8.260818 CGGAGGGAGTATGTAATATGAATGAAT 58.739 37.037 0.00 0.00 0.00 2.57
1987 2005 7.234782 ACGGAGGGAGTATGTAATATGAATGAA 59.765 37.037 0.00 0.00 0.00 2.57
1988 2006 6.724441 ACGGAGGGAGTATGTAATATGAATGA 59.276 38.462 0.00 0.00 0.00 2.57
1989 2007 6.936279 ACGGAGGGAGTATGTAATATGAATG 58.064 40.000 0.00 0.00 0.00 2.67
1990 2008 6.154706 GGACGGAGGGAGTATGTAATATGAAT 59.845 42.308 0.00 0.00 0.00 2.57
1991 2009 5.479375 GGACGGAGGGAGTATGTAATATGAA 59.521 44.000 0.00 0.00 0.00 2.57
1992 2010 5.014858 GGACGGAGGGAGTATGTAATATGA 58.985 45.833 0.00 0.00 0.00 2.15
1993 2011 4.142447 CGGACGGAGGGAGTATGTAATATG 60.142 50.000 0.00 0.00 0.00 1.78
1994 2012 4.015084 CGGACGGAGGGAGTATGTAATAT 58.985 47.826 0.00 0.00 0.00 1.28
1995 2013 3.415212 CGGACGGAGGGAGTATGTAATA 58.585 50.000 0.00 0.00 0.00 0.98
1996 2014 2.236766 CGGACGGAGGGAGTATGTAAT 58.763 52.381 0.00 0.00 0.00 1.89
1997 2015 1.683943 CGGACGGAGGGAGTATGTAA 58.316 55.000 0.00 0.00 0.00 2.41
1998 2016 0.179009 CCGGACGGAGGGAGTATGTA 60.179 60.000 4.40 0.00 37.50 2.29
1999 2017 1.455217 CCGGACGGAGGGAGTATGT 60.455 63.158 4.40 0.00 37.50 2.29
2000 2018 0.754217 TTCCGGACGGAGGGAGTATG 60.754 60.000 13.64 0.00 46.06 2.39
2001 2019 0.032813 TTTCCGGACGGAGGGAGTAT 60.033 55.000 13.64 0.00 46.06 2.12
2002 2020 0.251742 TTTTCCGGACGGAGGGAGTA 60.252 55.000 13.64 0.00 46.06 2.59
2003 2021 1.123246 TTTTTCCGGACGGAGGGAGT 61.123 55.000 13.64 0.00 46.06 3.85
2004 2022 0.672711 GTTTTTCCGGACGGAGGGAG 60.673 60.000 13.64 0.00 46.06 4.30
2005 2023 1.123246 AGTTTTTCCGGACGGAGGGA 61.123 55.000 13.64 1.83 46.06 4.20
2006 2024 0.250597 AAGTTTTTCCGGACGGAGGG 60.251 55.000 13.64 0.00 46.06 4.30
2007 2025 0.872388 CAAGTTTTTCCGGACGGAGG 59.128 55.000 13.64 0.00 46.06 4.30
2008 2026 1.589803 ACAAGTTTTTCCGGACGGAG 58.410 50.000 13.64 3.15 46.06 4.63
2009 2027 2.906691 TACAAGTTTTTCCGGACGGA 57.093 45.000 1.83 9.76 43.52 4.69
2010 2028 5.352016 TCATATTACAAGTTTTTCCGGACGG 59.648 40.000 1.83 3.96 0.00 4.79
2011 2029 6.411630 TCATATTACAAGTTTTTCCGGACG 57.588 37.500 1.83 0.00 0.00 4.79
2068 2086 6.974932 ACAAACAGAATAGCATCTACAGTG 57.025 37.500 0.00 0.00 0.00 3.66
2072 2090 7.852945 GTGCATAACAAACAGAATAGCATCTAC 59.147 37.037 0.00 0.00 0.00 2.59
2077 2095 5.009631 AGGTGCATAACAAACAGAATAGCA 58.990 37.500 0.00 0.00 0.00 3.49
2109 2127 5.655488 AGACAGATCCGACAAAACTGATAG 58.345 41.667 0.00 0.00 33.53 2.08
2124 2142 8.595533 GGTTGAAAAGAAAAACAAAGACAGATC 58.404 33.333 0.00 0.00 0.00 2.75
2190 2370 1.065199 TGGCATTGAGTGACTCCATCC 60.065 52.381 10.52 8.71 36.52 3.51
2192 2372 1.632409 ACTGGCATTGAGTGACTCCAT 59.368 47.619 10.52 1.15 36.52 3.41
2194 2374 2.622436 GTACTGGCATTGAGTGACTCC 58.378 52.381 10.52 0.00 36.52 3.85
2245 2426 7.885297 TGTCACAAAGAATTCCTAATTCCTTG 58.115 34.615 16.57 16.57 46.94 3.61
2305 2486 3.252458 CCCAAGCGCAGGTAATAATAACC 59.748 47.826 11.47 0.00 37.06 2.85
2321 2502 0.605319 TCCGTCACATTGTCCCAAGC 60.605 55.000 0.00 0.00 0.00 4.01
2324 2505 1.125093 ACCTCCGTCACATTGTCCCA 61.125 55.000 0.00 0.00 0.00 4.37
2325 2506 0.391263 GACCTCCGTCACATTGTCCC 60.391 60.000 0.00 0.00 38.99 4.46
2419 2602 5.128205 TCAGTGCCTGAAATATGGATGAAG 58.872 41.667 2.78 0.00 37.57 3.02
2478 2661 2.350192 TCAATGGTGCACGCTTTATACG 59.650 45.455 11.45 0.00 0.00 3.06
2479 2662 3.126171 TGTCAATGGTGCACGCTTTATAC 59.874 43.478 11.45 9.94 0.00 1.47
2480 2663 3.339141 TGTCAATGGTGCACGCTTTATA 58.661 40.909 11.45 0.00 0.00 0.98
2639 2822 7.643569 ATCATAATCAGGCAACACATTAACA 57.356 32.000 0.00 0.00 41.41 2.41
2640 2823 8.931385 AAATCATAATCAGGCAACACATTAAC 57.069 30.769 0.00 0.00 41.41 2.01
2644 2827 8.701908 ATAGAAATCATAATCAGGCAACACAT 57.298 30.769 0.00 0.00 41.41 3.21
2680 2864 2.288152 CGAAACACAAGTTCAATGGGGG 60.288 50.000 0.00 0.00 36.84 5.40
2710 2894 5.367937 ACCAGAATGAGTACAGCATCCTATT 59.632 40.000 0.00 0.00 39.69 1.73
2786 2974 5.522097 GCAAGCTTCTCAGTAATAGAACTCC 59.478 44.000 0.00 0.00 0.00 3.85
2816 3009 5.820947 GTGACTGAAAGGTACAAAAGGAGAA 59.179 40.000 0.00 0.00 39.30 2.87
2831 3024 7.229106 TGAATGTTGAGATCATTGTGACTGAAA 59.771 33.333 0.00 0.00 35.94 2.69
2868 3061 0.877743 GAGAGGAACACAAAGCAGCC 59.122 55.000 0.00 0.00 0.00 4.85
2869 3062 0.877743 GGAGAGGAACACAAAGCAGC 59.122 55.000 0.00 0.00 0.00 5.25
2870 3063 2.557920 AGGAGAGGAACACAAAGCAG 57.442 50.000 0.00 0.00 0.00 4.24
2871 3064 2.951642 CAAAGGAGAGGAACACAAAGCA 59.048 45.455 0.00 0.00 0.00 3.91
2872 3065 2.952310 ACAAAGGAGAGGAACACAAAGC 59.048 45.455 0.00 0.00 0.00 3.51
2873 3066 4.035675 GTCACAAAGGAGAGGAACACAAAG 59.964 45.833 0.00 0.00 0.00 2.77
2874 3067 3.945285 GTCACAAAGGAGAGGAACACAAA 59.055 43.478 0.00 0.00 0.00 2.83
2875 3068 3.054728 TGTCACAAAGGAGAGGAACACAA 60.055 43.478 0.00 0.00 0.00 3.33
2876 3069 2.503765 TGTCACAAAGGAGAGGAACACA 59.496 45.455 0.00 0.00 0.00 3.72
2877 3070 2.872858 GTGTCACAAAGGAGAGGAACAC 59.127 50.000 0.00 0.00 0.00 3.32
2878 3071 2.771943 AGTGTCACAAAGGAGAGGAACA 59.228 45.455 5.62 0.00 0.00 3.18
2879 3072 3.134458 CAGTGTCACAAAGGAGAGGAAC 58.866 50.000 5.62 0.00 0.00 3.62
2880 3073 3.038280 TCAGTGTCACAAAGGAGAGGAA 58.962 45.455 5.62 0.00 0.00 3.36
2881 3074 2.677914 TCAGTGTCACAAAGGAGAGGA 58.322 47.619 5.62 0.00 0.00 3.71
2882 3075 3.332919 CATCAGTGTCACAAAGGAGAGG 58.667 50.000 5.62 0.00 0.00 3.69
2883 3076 2.740981 GCATCAGTGTCACAAAGGAGAG 59.259 50.000 5.62 0.00 0.00 3.20
2884 3077 2.104622 TGCATCAGTGTCACAAAGGAGA 59.895 45.455 5.62 0.00 0.00 3.71
2885 3078 2.497138 TGCATCAGTGTCACAAAGGAG 58.503 47.619 5.62 0.00 0.00 3.69
2886 3079 2.636647 TGCATCAGTGTCACAAAGGA 57.363 45.000 5.62 0.00 0.00 3.36
2887 3080 3.928727 ATTGCATCAGTGTCACAAAGG 57.071 42.857 5.62 0.00 0.00 3.11
2888 3081 6.864685 ACAATAATTGCATCAGTGTCACAAAG 59.135 34.615 5.62 0.00 0.00 2.77
2889 3082 6.747125 ACAATAATTGCATCAGTGTCACAAA 58.253 32.000 5.62 0.00 0.00 2.83
2890 3083 6.330004 ACAATAATTGCATCAGTGTCACAA 57.670 33.333 5.62 0.00 0.00 3.33
2891 3084 5.106197 GGACAATAATTGCATCAGTGTCACA 60.106 40.000 18.69 0.00 36.48 3.58
2892 3085 5.106197 TGGACAATAATTGCATCAGTGTCAC 60.106 40.000 18.69 11.81 36.48 3.67
2893 3086 5.008980 TGGACAATAATTGCATCAGTGTCA 58.991 37.500 18.69 7.79 36.48 3.58
2973 3185 6.995686 ACATACCTGCAATATGTTATTCGGAA 59.004 34.615 14.66 0.00 39.69 4.30
2976 3188 7.384932 TCTCACATACCTGCAATATGTTATTCG 59.615 37.037 16.87 8.70 40.51 3.34
3092 3305 6.552725 TCATATTGATCTGTAGAAGAGCCACT 59.447 38.462 0.00 0.00 40.82 4.00
3109 3322 5.337578 TGTCCTCGACATTGTCATATTGA 57.662 39.130 16.61 4.68 37.67 2.57
3217 3430 1.528129 CCTGGCTTTCCACTTCACTC 58.472 55.000 0.00 0.00 37.47 3.51
3270 3483 6.769822 GTCCTCCATGAATATGTCACATTCTT 59.230 38.462 0.00 0.00 39.72 2.52
3281 3494 4.785346 ACAGCTTGTCCTCCATGAATAT 57.215 40.909 0.00 0.00 0.00 1.28
3379 3592 3.633986 CCATTTCCATTAAGCACTCCTCC 59.366 47.826 0.00 0.00 0.00 4.30
3391 3604 3.675348 TCTGCCATCTCCATTTCCATT 57.325 42.857 0.00 0.00 0.00 3.16
3507 3720 0.251073 AGGCTGCAAAATTCATGGCC 59.749 50.000 0.50 0.00 38.50 5.36
3509 3722 3.048337 ACAAGGCTGCAAAATTCATGG 57.952 42.857 0.50 0.00 0.00 3.66
3524 3737 1.384525 TGTCCACGGAAACAACAAGG 58.615 50.000 0.00 0.00 0.00 3.61
3594 3807 9.931210 ATTACATTTTATAAACTTGCTAGCGTC 57.069 29.630 10.77 0.00 0.00 5.19
3631 3844 3.303329 CCTTCACAGTTCACATTCACACG 60.303 47.826 0.00 0.00 0.00 4.49
3677 3890 2.582052 CCACAGGTTTACTCAGCCAAA 58.418 47.619 0.00 0.00 0.00 3.28
3692 3905 1.199327 CAAACATCAGAGCTGCCACAG 59.801 52.381 0.00 0.00 34.12 3.66
3701 3914 1.089112 TCATGCCGCAAACATCAGAG 58.911 50.000 0.00 0.00 0.00 3.35
3702 3915 1.199789 GTTCATGCCGCAAACATCAGA 59.800 47.619 0.00 0.00 0.00 3.27
3757 3970 2.173669 CACCTCCATAACAGGCGCG 61.174 63.158 0.00 0.00 33.84 6.86
3772 3985 4.314740 TGTTGCATTAAGTTGGTTCACC 57.685 40.909 0.00 0.00 0.00 4.02
3826 4144 5.188948 CCCGGAATTCATATATCAGTACCCA 59.811 44.000 0.73 0.00 0.00 4.51
3827 4145 5.396436 CCCCGGAATTCATATATCAGTACCC 60.396 48.000 0.73 0.00 0.00 3.69
3837 4155 3.976015 ACAACAACCCCGGAATTCATAT 58.024 40.909 0.73 0.00 0.00 1.78
3841 4163 4.794278 ATAAACAACAACCCCGGAATTC 57.206 40.909 0.73 0.00 0.00 2.17
3847 4169 4.081917 AGCCAATAATAAACAACAACCCCG 60.082 41.667 0.00 0.00 0.00 5.73
3893 4215 2.716217 ACCTGCTGTATCTGCCTTTTC 58.284 47.619 0.00 0.00 0.00 2.29
3910 4232 2.108250 ACCAAACAACTGGCTGATACCT 59.892 45.455 0.00 0.00 40.45 3.08
3928 4250 1.093972 CATGCCTTATCAACGCACCA 58.906 50.000 0.00 0.00 34.87 4.17
3932 4254 4.351192 CCTTTTACATGCCTTATCAACGC 58.649 43.478 0.00 0.00 0.00 4.84
3940 4262 0.243636 GCACGCCTTTTACATGCCTT 59.756 50.000 0.00 0.00 0.00 4.35
3945 4267 4.250116 TCATTTTGCACGCCTTTTACAT 57.750 36.364 0.00 0.00 0.00 2.29
3951 4273 1.612950 TGTGATCATTTTGCACGCCTT 59.387 42.857 0.00 0.00 35.37 4.35
3962 4284 5.728637 TCCTAGTGCGATATGTGATCATT 57.271 39.130 0.00 0.00 35.70 2.57
3963 4285 5.728637 TTCCTAGTGCGATATGTGATCAT 57.271 39.130 0.00 0.00 38.00 2.45
3968 4290 5.532557 TCATCTTTCCTAGTGCGATATGTG 58.467 41.667 0.00 0.00 0.00 3.21
4050 4376 7.506114 TGACTTCAGGTGTTACAAGAAACTAT 58.494 34.615 0.00 0.00 0.00 2.12
4051 4377 6.880484 TGACTTCAGGTGTTACAAGAAACTA 58.120 36.000 0.00 0.00 0.00 2.24
4052 4378 5.741011 TGACTTCAGGTGTTACAAGAAACT 58.259 37.500 0.00 0.00 0.00 2.66
4053 4379 6.260050 TCATGACTTCAGGTGTTACAAGAAAC 59.740 38.462 0.00 0.00 0.00 2.78
4054 4380 6.353323 TCATGACTTCAGGTGTTACAAGAAA 58.647 36.000 0.00 0.00 0.00 2.52
4055 4381 5.924356 TCATGACTTCAGGTGTTACAAGAA 58.076 37.500 0.00 0.00 0.00 2.52
4056 4382 5.070446 ACTCATGACTTCAGGTGTTACAAGA 59.930 40.000 0.00 0.00 31.55 3.02
4057 4383 5.300752 ACTCATGACTTCAGGTGTTACAAG 58.699 41.667 0.00 0.00 31.55 3.16
4058 4384 5.290493 ACTCATGACTTCAGGTGTTACAA 57.710 39.130 0.00 0.00 31.55 2.41
4059 4385 4.955811 ACTCATGACTTCAGGTGTTACA 57.044 40.909 0.00 0.00 31.55 2.41
4060 4386 6.268825 TCTACTCATGACTTCAGGTGTTAC 57.731 41.667 4.18 0.00 36.14 2.50
4061 4387 7.068348 GGTATCTACTCATGACTTCAGGTGTTA 59.932 40.741 4.18 0.00 36.14 2.41
4062 4388 6.127310 GGTATCTACTCATGACTTCAGGTGTT 60.127 42.308 4.18 0.00 36.14 3.32
4063 4389 5.361285 GGTATCTACTCATGACTTCAGGTGT 59.639 44.000 0.00 4.29 37.91 4.16
4064 4390 5.596361 AGGTATCTACTCATGACTTCAGGTG 59.404 44.000 0.00 0.00 0.00 4.00
4065 4391 5.772004 AGGTATCTACTCATGACTTCAGGT 58.228 41.667 0.00 0.00 0.00 4.00
4066 4392 6.016360 CAGAGGTATCTACTCATGACTTCAGG 60.016 46.154 0.00 0.00 37.43 3.86
4067 4393 6.514870 GCAGAGGTATCTACTCATGACTTCAG 60.515 46.154 0.00 0.00 37.43 3.02
4068 4394 5.300539 GCAGAGGTATCTACTCATGACTTCA 59.699 44.000 0.00 0.00 37.43 3.02
4069 4395 5.534654 AGCAGAGGTATCTACTCATGACTTC 59.465 44.000 0.00 0.00 37.43 3.01
4070 4396 5.454062 AGCAGAGGTATCTACTCATGACTT 58.546 41.667 0.00 0.00 37.43 3.01
4071 4397 5.060427 AGCAGAGGTATCTACTCATGACT 57.940 43.478 0.00 0.00 37.43 3.41
4072 4398 5.048782 CAGAGCAGAGGTATCTACTCATGAC 60.049 48.000 7.94 0.00 45.17 3.06
4073 4399 5.069318 CAGAGCAGAGGTATCTACTCATGA 58.931 45.833 7.94 0.00 45.17 3.07
4074 4400 4.826733 ACAGAGCAGAGGTATCTACTCATG 59.173 45.833 7.94 6.08 45.17 3.07
4075 4401 5.060427 ACAGAGCAGAGGTATCTACTCAT 57.940 43.478 7.94 0.00 45.17 2.90
4076 4402 4.456535 GACAGAGCAGAGGTATCTACTCA 58.543 47.826 7.94 0.00 45.17 3.41
4077 4403 3.818773 GGACAGAGCAGAGGTATCTACTC 59.181 52.174 0.00 0.00 43.69 2.59
4078 4404 3.203263 TGGACAGAGCAGAGGTATCTACT 59.797 47.826 0.00 0.00 33.22 2.57
4079 4405 3.556999 TGGACAGAGCAGAGGTATCTAC 58.443 50.000 0.00 0.00 33.22 2.59
4080 4406 3.953542 TGGACAGAGCAGAGGTATCTA 57.046 47.619 0.00 0.00 33.22 1.98
4081 4407 2.836636 TGGACAGAGCAGAGGTATCT 57.163 50.000 0.00 0.00 35.63 1.98
4082 4408 2.697751 ACATGGACAGAGCAGAGGTATC 59.302 50.000 0.00 0.00 0.00 2.24
4083 4409 2.756907 ACATGGACAGAGCAGAGGTAT 58.243 47.619 0.00 0.00 0.00 2.73
4084 4410 2.238084 ACATGGACAGAGCAGAGGTA 57.762 50.000 0.00 0.00 0.00 3.08
4085 4411 1.277557 GAACATGGACAGAGCAGAGGT 59.722 52.381 0.00 0.00 0.00 3.85
4086 4412 1.738365 CGAACATGGACAGAGCAGAGG 60.738 57.143 0.00 0.00 0.00 3.69
4087 4413 1.638133 CGAACATGGACAGAGCAGAG 58.362 55.000 0.00 0.00 0.00 3.35
4088 4414 0.390340 GCGAACATGGACAGAGCAGA 60.390 55.000 0.00 0.00 0.00 4.26
4089 4415 0.390866 AGCGAACATGGACAGAGCAG 60.391 55.000 0.00 0.00 0.00 4.24
4090 4416 0.671472 CAGCGAACATGGACAGAGCA 60.671 55.000 0.00 0.00 0.00 4.26
4091 4417 0.390340 TCAGCGAACATGGACAGAGC 60.390 55.000 0.00 0.00 0.00 4.09
4092 4418 1.354040 GTCAGCGAACATGGACAGAG 58.646 55.000 0.00 0.00 0.00 3.35
4093 4419 0.388520 CGTCAGCGAACATGGACAGA 60.389 55.000 0.00 0.00 41.33 3.41
4094 4420 0.388520 TCGTCAGCGAACATGGACAG 60.389 55.000 0.00 0.00 44.92 3.51
4095 4421 1.663173 TCGTCAGCGAACATGGACA 59.337 52.632 0.00 0.00 44.92 4.02
4096 4422 4.571250 TCGTCAGCGAACATGGAC 57.429 55.556 0.00 0.00 44.92 4.02
4139 4538 0.606401 TCCGCTTGCTCAAGGAAAGG 60.606 55.000 11.15 0.00 38.80 3.11
4140 4539 0.801251 CTCCGCTTGCTCAAGGAAAG 59.199 55.000 11.15 0.00 38.80 2.62
4141 4540 0.396435 TCTCCGCTTGCTCAAGGAAA 59.604 50.000 11.15 0.00 38.80 3.13
4142 4541 0.396435 TTCTCCGCTTGCTCAAGGAA 59.604 50.000 11.15 3.97 38.80 3.36
4143 4542 0.396435 TTTCTCCGCTTGCTCAAGGA 59.604 50.000 11.15 1.84 38.80 3.36
4187 4588 0.607217 CAACTGAGCTGATGCCACCA 60.607 55.000 0.00 0.00 40.80 4.17
4188 4589 1.310933 CCAACTGAGCTGATGCCACC 61.311 60.000 0.00 0.00 40.80 4.61
4190 4591 1.676635 GCCAACTGAGCTGATGCCA 60.677 57.895 0.00 0.00 40.80 4.92
4191 4592 2.413142 GGCCAACTGAGCTGATGCC 61.413 63.158 0.00 0.00 40.80 4.40
4192 4593 1.378250 AGGCCAACTGAGCTGATGC 60.378 57.895 5.01 0.00 40.05 3.91
4288 4722 1.745489 GTCCCCGTCACTTGCATCC 60.745 63.158 0.00 0.00 0.00 3.51
4301 4735 1.838073 TTTCTCCAGGAAGCGTCCCC 61.838 60.000 15.64 0.00 46.30 4.81
4314 4748 2.350868 GCCAACTCTTTTCGCTTTCTCC 60.351 50.000 0.00 0.00 0.00 3.71
4323 4757 2.358898 TGCTGTTGAGCCAACTCTTTTC 59.641 45.455 15.91 3.78 45.57 2.29
4345 4779 2.663188 GGCGACGATGATCCTGCC 60.663 66.667 0.00 2.15 35.04 4.85
4370 4804 6.510879 TGTAGTAGATGTAAGTGAGGTGTG 57.489 41.667 0.00 0.00 0.00 3.82
4409 4844 1.541588 CGGCAGAAAGAGGAAAAAGGG 59.458 52.381 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.