Multiple sequence alignment - TraesCS2A01G424500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G424500 chr2A 100.000 3893 0 0 1 3893 678680015 678676123 0.000000e+00 7190.0
1 TraesCS2A01G424500 chr2A 84.301 930 125 13 1000 1914 684915848 684914925 0.000000e+00 889.0
2 TraesCS2A01G424500 chr2A 80.978 941 144 14 997 1913 678994559 678995488 0.000000e+00 713.0
3 TraesCS2A01G424500 chr2A 80.707 679 130 1 2263 2940 684913915 684913237 9.580000e-146 527.0
4 TraesCS2A01G424500 chr2A 84.162 543 72 10 48 579 717177195 717177734 7.460000e-142 514.0
5 TraesCS2A01G424500 chr2D 94.804 2733 81 22 655 3370 535582689 535580001 0.000000e+00 4204.0
6 TraesCS2A01G424500 chr2D 84.718 975 123 18 1000 1956 542127714 542126748 0.000000e+00 952.0
7 TraesCS2A01G424500 chr2D 89.676 649 56 3 4 641 535583426 535582778 0.000000e+00 817.0
8 TraesCS2A01G424500 chr2D 80.957 940 143 22 997 1913 536479815 536480741 0.000000e+00 712.0
9 TraesCS2A01G424500 chr2D 85.521 518 71 4 68 582 429466885 429467401 4.430000e-149 538.0
10 TraesCS2A01G424500 chr2D 81.833 633 115 0 2263 2895 542126491 542125859 2.060000e-147 532.0
11 TraesCS2A01G424500 chr2D 95.169 207 10 0 3687 3893 535579411 535579205 1.040000e-85 327.0
12 TraesCS2A01G424500 chr2D 95.726 117 5 0 3550 3666 535580012 535579896 5.130000e-44 189.0
13 TraesCS2A01G424500 chr2D 91.045 134 12 0 3364 3497 602705749 602705882 8.590000e-42 182.0
14 TraesCS2A01G424500 chr2D 92.308 91 7 0 3791 3881 308901818 308901728 3.160000e-26 130.0
15 TraesCS2A01G424500 chr2B 91.361 1389 72 16 1964 3349 636822052 636820709 0.000000e+00 1857.0
16 TraesCS2A01G424500 chr2B 95.533 1164 34 5 825 1980 636823382 636822229 0.000000e+00 1845.0
17 TraesCS2A01G424500 chr2B 89.385 1008 71 16 923 1921 638751509 638752489 0.000000e+00 1236.0
18 TraesCS2A01G424500 chr2B 87.724 782 94 2 2155 2935 638752868 638753648 0.000000e+00 911.0
19 TraesCS2A01G424500 chr2B 81.365 923 151 11 997 1913 637791401 637792308 0.000000e+00 732.0
20 TraesCS2A01G424500 chr2B 81.660 747 120 9 997 1739 637797435 637798168 4.300000e-169 604.0
21 TraesCS2A01G424500 chr2B 80.716 726 113 16 1206 1914 646996104 646995389 1.230000e-149 540.0
22 TraesCS2A01G424500 chr2B 78.863 686 142 3 2257 2940 646994380 646993696 9.860000e-126 460.0
23 TraesCS2A01G424500 chr2B 89.506 162 15 2 3520 3681 636820696 636820537 1.830000e-48 204.0
24 TraesCS2A01G424500 chr2B 91.603 131 11 0 3363 3493 715532041 715531911 8.590000e-42 182.0
25 TraesCS2A01G424500 chr2B 95.349 86 4 0 3586 3671 636820696 636820611 1.890000e-28 137.0
26 TraesCS2A01G424500 chr2B 88.571 105 11 1 1810 1913 637798731 637798835 4.080000e-25 126.0
27 TraesCS2A01G424500 chr2B 92.000 75 4 1 3687 3761 522540735 522540663 1.910000e-18 104.0
28 TraesCS2A01G424500 chr2B 92.593 54 4 0 1540 1593 646996397 646996450 1.160000e-10 78.7
29 TraesCS2A01G424500 chr4B 84.864 588 74 12 1 579 649840404 649840985 2.610000e-161 579.0
30 TraesCS2A01G424500 chr4B 84.644 534 68 8 60 579 577009614 577010147 1.600000e-143 520.0
31 TraesCS2A01G424500 chr4B 85.795 176 23 2 3320 3494 352135686 352135512 6.640000e-43 185.0
32 TraesCS2A01G424500 chr4B 89.209 139 15 0 3357 3495 529207551 529207689 1.440000e-39 174.0
33 TraesCS2A01G424500 chr7D 82.451 661 114 2 2263 2922 568067986 568068645 9.380000e-161 577.0
34 TraesCS2A01G424500 chr7D 84.310 580 74 10 7 570 159709763 159709185 5.680000e-153 551.0
35 TraesCS2A01G424500 chr7D 89.855 138 12 2 3366 3502 161488859 161488723 4.000000e-40 176.0
36 TraesCS2A01G424500 chr6B 84.694 588 72 13 4 576 717912107 717911523 4.360000e-159 571.0
37 TraesCS2A01G424500 chr6B 92.424 66 5 0 3687 3752 632529382 632529447 1.150000e-15 95.3
38 TraesCS2A01G424500 chr1D 84.944 538 71 8 49 579 239565043 239565577 1.590000e-148 536.0
39 TraesCS2A01G424500 chr4D 81.849 595 89 14 1 580 483202995 483203585 2.100000e-132 483.0
40 TraesCS2A01G424500 chr3D 78.014 564 119 5 2264 2823 532124679 532124117 2.230000e-92 350.0
41 TraesCS2A01G424500 chr3D 87.283 173 18 4 3352 3521 382748027 382747856 1.100000e-45 195.0
42 TraesCS2A01G424500 chr3A 77.482 564 122 4 2264 2823 667306994 667306432 2.240000e-87 333.0
43 TraesCS2A01G424500 chrUn 75.000 604 129 18 1178 1773 12449777 12450366 3.860000e-65 259.0
44 TraesCS2A01G424500 chrUn 86.667 75 8 1 3687 3761 75381045 75381117 8.960000e-12 82.4
45 TraesCS2A01G424500 chrUn 100.000 29 0 0 3340 3368 60957420 60957448 2.000000e-03 54.7
46 TraesCS2A01G424500 chr3B 91.791 134 11 0 3367 3500 545011373 545011240 1.850000e-43 187.0
47 TraesCS2A01G424500 chr3B 92.857 42 3 0 3617 3658 489362896 489362937 1.170000e-05 62.1
48 TraesCS2A01G424500 chr5A 90.511 137 13 0 3358 3494 613013914 613014050 8.590000e-42 182.0
49 TraesCS2A01G424500 chr5A 86.538 52 7 0 3319 3370 478313398 478313347 1.510000e-04 58.4
50 TraesCS2A01G424500 chr7B 90.370 135 13 0 3362 3496 23530242 23530376 1.110000e-40 178.0
51 TraesCS2A01G424500 chr1B 92.000 75 4 1 3687 3761 99602671 99602743 1.910000e-18 104.0
52 TraesCS2A01G424500 chr1B 93.939 66 4 0 3687 3752 42334937 42334872 2.480000e-17 100.0
53 TraesCS2A01G424500 chr5D 92.424 66 5 0 3687 3752 526611361 526611426 1.150000e-15 95.3
54 TraesCS2A01G424500 chr5D 100.000 28 0 0 3550 3577 527378255 527378228 7.000000e-03 52.8
55 TraesCS2A01G424500 chr7A 88.158 76 6 2 3687 3762 350576591 350576663 1.930000e-13 87.9
56 TraesCS2A01G424500 chr5B 88.000 75 7 1 3687 3761 456465411 456465339 1.930000e-13 87.9
57 TraesCS2A01G424500 chr1A 95.918 49 2 0 3788 3836 343630900 343630852 3.220000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G424500 chr2A 678676123 678680015 3892 True 7190.00 7190 100.00000 1 3893 1 chr2A.!!$R1 3892
1 TraesCS2A01G424500 chr2A 678994559 678995488 929 False 713.00 713 80.97800 997 1913 1 chr2A.!!$F1 916
2 TraesCS2A01G424500 chr2A 684913237 684915848 2611 True 708.00 889 82.50400 1000 2940 2 chr2A.!!$R2 1940
3 TraesCS2A01G424500 chr2A 717177195 717177734 539 False 514.00 514 84.16200 48 579 1 chr2A.!!$F2 531
4 TraesCS2A01G424500 chr2D 535579205 535583426 4221 True 1384.25 4204 93.84375 4 3893 4 chr2D.!!$R2 3889
5 TraesCS2A01G424500 chr2D 542125859 542127714 1855 True 742.00 952 83.27550 1000 2895 2 chr2D.!!$R3 1895
6 TraesCS2A01G424500 chr2D 536479815 536480741 926 False 712.00 712 80.95700 997 1913 1 chr2D.!!$F2 916
7 TraesCS2A01G424500 chr2D 429466885 429467401 516 False 538.00 538 85.52100 68 582 1 chr2D.!!$F1 514
8 TraesCS2A01G424500 chr2B 638751509 638753648 2139 False 1073.50 1236 88.55450 923 2935 2 chr2B.!!$F4 2012
9 TraesCS2A01G424500 chr2B 636820537 636823382 2845 True 1010.75 1857 92.93725 825 3681 4 chr2B.!!$R3 2856
10 TraesCS2A01G424500 chr2B 637791401 637792308 907 False 732.00 732 81.36500 997 1913 1 chr2B.!!$F1 916
11 TraesCS2A01G424500 chr2B 646993696 646996104 2408 True 500.00 540 79.78950 1206 2940 2 chr2B.!!$R4 1734
12 TraesCS2A01G424500 chr2B 637797435 637798835 1400 False 365.00 604 85.11550 997 1913 2 chr2B.!!$F3 916
13 TraesCS2A01G424500 chr4B 649840404 649840985 581 False 579.00 579 84.86400 1 579 1 chr4B.!!$F3 578
14 TraesCS2A01G424500 chr4B 577009614 577010147 533 False 520.00 520 84.64400 60 579 1 chr4B.!!$F2 519
15 TraesCS2A01G424500 chr7D 568067986 568068645 659 False 577.00 577 82.45100 2263 2922 1 chr7D.!!$F1 659
16 TraesCS2A01G424500 chr7D 159709185 159709763 578 True 551.00 551 84.31000 7 570 1 chr7D.!!$R1 563
17 TraesCS2A01G424500 chr6B 717911523 717912107 584 True 571.00 571 84.69400 4 576 1 chr6B.!!$R1 572
18 TraesCS2A01G424500 chr1D 239565043 239565577 534 False 536.00 536 84.94400 49 579 1 chr1D.!!$F1 530
19 TraesCS2A01G424500 chr4D 483202995 483203585 590 False 483.00 483 81.84900 1 580 1 chr4D.!!$F1 579
20 TraesCS2A01G424500 chr3D 532124117 532124679 562 True 350.00 350 78.01400 2264 2823 1 chr3D.!!$R2 559
21 TraesCS2A01G424500 chr3A 667306432 667306994 562 True 333.00 333 77.48200 2264 2823 1 chr3A.!!$R1 559
22 TraesCS2A01G424500 chrUn 12449777 12450366 589 False 259.00 259 75.00000 1178 1773 1 chrUn.!!$F1 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
995 1104 0.179084 TTCGATCAAGCCATCCCGAC 60.179 55.0 0.0 0.0 0.0 4.79 F
1923 3351 0.690762 TGGTAAGTGCTCCAAGGTCC 59.309 55.0 0.0 0.0 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2007 3791 1.938585 TCCTCCATCCGTGAAACTCT 58.061 50.000 0.0 0.0 31.75 3.24 R
3178 4986 1.132643 GAGCCGAACTATGTCACGAGT 59.867 52.381 0.0 0.0 0.00 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 4.813526 CTCGTCGTCAGCGTCCCG 62.814 72.222 0.00 0.00 39.49 5.14
58 59 0.820226 CGCACATTCTCCTCCTCTGA 59.180 55.000 0.00 0.00 0.00 3.27
243 254 2.497792 TACTAGGCGGACGGGTGGAA 62.498 60.000 0.00 0.00 0.00 3.53
245 256 1.076118 TAGGCGGACGGGTGGAATA 60.076 57.895 0.00 0.00 0.00 1.75
246 257 0.687098 TAGGCGGACGGGTGGAATAA 60.687 55.000 0.00 0.00 0.00 1.40
270 284 2.685017 ATGGCAGCGGACAGGAGA 60.685 61.111 0.00 0.00 33.72 3.71
274 288 2.581354 CAGCGGACAGGAGAAGGG 59.419 66.667 0.00 0.00 0.00 3.95
295 309 3.138283 GGAAATGTGGATGGATGGTAGGA 59.862 47.826 0.00 0.00 0.00 2.94
345 359 2.423446 GCTAGGCACTATGCGGCT 59.577 61.111 0.00 0.00 46.21 5.52
387 401 2.571216 CCACTTGTCCGACGGAGGT 61.571 63.158 18.98 13.60 29.39 3.85
430 444 3.961414 GGGGTGTTTCCGGCTGGA 61.961 66.667 11.27 11.27 44.61 3.86
501 522 4.102524 CGCCCCATATTTAGGCTGGATATA 59.897 45.833 0.00 0.00 44.84 0.86
505 526 6.389869 CCCCATATTTAGGCTGGATATAAGGA 59.610 42.308 0.00 0.00 31.38 3.36
531 552 0.319083 TCAGCTCGGGCGTTTAAGAA 59.681 50.000 0.00 0.00 44.37 2.52
582 603 0.536724 CATGACCGGTCAGTGATGGA 59.463 55.000 37.98 16.01 43.61 3.41
602 623 2.663196 GGCAACTACAGCCCGAGT 59.337 61.111 0.00 0.00 46.50 4.18
611 632 1.071471 CAGCCCGAGTGTTTGAGGT 59.929 57.895 0.00 0.00 0.00 3.85
629 650 0.252197 GTCTATTTGGGGCACTCGGT 59.748 55.000 0.00 0.00 0.00 4.69
641 662 1.468395 GCACTCGGTTGTAGAGCTCTC 60.468 57.143 22.17 12.59 39.23 3.20
642 663 1.813178 CACTCGGTTGTAGAGCTCTCA 59.187 52.381 22.17 15.15 39.23 3.27
643 664 2.425312 CACTCGGTTGTAGAGCTCTCAT 59.575 50.000 22.17 0.00 39.23 2.90
644 665 2.425312 ACTCGGTTGTAGAGCTCTCATG 59.575 50.000 22.17 10.79 39.23 3.07
645 666 2.425312 CTCGGTTGTAGAGCTCTCATGT 59.575 50.000 22.17 0.00 0.00 3.21
646 667 3.617284 TCGGTTGTAGAGCTCTCATGTA 58.383 45.455 22.17 0.00 0.00 2.29
647 668 3.628032 TCGGTTGTAGAGCTCTCATGTAG 59.372 47.826 22.17 9.51 0.00 2.74
649 670 4.575236 CGGTTGTAGAGCTCTCATGTAGTA 59.425 45.833 22.17 0.00 0.00 1.82
650 671 5.504337 CGGTTGTAGAGCTCTCATGTAGTAC 60.504 48.000 22.17 10.83 0.00 2.73
652 673 6.766944 GGTTGTAGAGCTCTCATGTAGTACTA 59.233 42.308 22.17 4.23 0.00 1.82
653 674 7.446013 GGTTGTAGAGCTCTCATGTAGTACTAT 59.554 40.741 22.17 0.00 0.00 2.12
768 864 4.709886 ACCAGCCCACCATTATTTAAGTTC 59.290 41.667 0.00 0.00 0.00 3.01
769 865 4.956075 CCAGCCCACCATTATTTAAGTTCT 59.044 41.667 0.00 0.00 0.00 3.01
770 866 6.126409 CCAGCCCACCATTATTTAAGTTCTA 58.874 40.000 0.00 0.00 0.00 2.10
771 867 6.263168 CCAGCCCACCATTATTTAAGTTCTAG 59.737 42.308 0.00 0.00 0.00 2.43
772 868 7.054124 CAGCCCACCATTATTTAAGTTCTAGA 58.946 38.462 0.00 0.00 0.00 2.43
773 869 7.721399 CAGCCCACCATTATTTAAGTTCTAGAT 59.279 37.037 0.00 0.00 0.00 1.98
774 870 8.282256 AGCCCACCATTATTTAAGTTCTAGATT 58.718 33.333 0.00 0.00 0.00 2.40
775 871 8.914011 GCCCACCATTATTTAAGTTCTAGATTT 58.086 33.333 0.00 0.00 0.00 2.17
893 989 3.109619 CCGAGAAGAATAGACAACGAGC 58.890 50.000 0.00 0.00 0.00 5.03
920 1016 3.099905 CCAAATCTTTCCCCTCCCTTTC 58.900 50.000 0.00 0.00 0.00 2.62
921 1017 3.099905 CAAATCTTTCCCCTCCCTTTCC 58.900 50.000 0.00 0.00 0.00 3.13
978 1087 3.993920 TCCCAAGCAAAGCTTCAAATTC 58.006 40.909 0.00 0.00 46.77 2.17
991 1100 4.604976 CTTCAAATTCGATCAAGCCATCC 58.395 43.478 0.00 0.00 0.00 3.51
992 1101 2.951642 TCAAATTCGATCAAGCCATCCC 59.048 45.455 0.00 0.00 0.00 3.85
993 1102 1.597742 AATTCGATCAAGCCATCCCG 58.402 50.000 0.00 0.00 0.00 5.14
994 1103 0.758734 ATTCGATCAAGCCATCCCGA 59.241 50.000 0.00 0.00 0.00 5.14
995 1104 0.179084 TTCGATCAAGCCATCCCGAC 60.179 55.000 0.00 0.00 0.00 4.79
1773 2416 4.769688 ACGCCATCTTTGACAAGATCATA 58.230 39.130 0.00 0.00 45.26 2.15
1923 3351 0.690762 TGGTAAGTGCTCCAAGGTCC 59.309 55.000 0.00 0.00 0.00 4.46
1990 3774 4.757657 ACCGTTAACAAATGACTGTGCATA 59.242 37.500 6.39 0.00 0.00 3.14
2000 3784 7.497579 ACAAATGACTGTGCATATTACGGAATA 59.502 33.333 1.72 1.72 32.06 1.75
2001 3785 8.506437 CAAATGACTGTGCATATTACGGAATAT 58.494 33.333 7.08 7.08 38.55 1.28
2004 3788 7.860613 TGACTGTGCATATTACGGAATATTTG 58.139 34.615 10.31 3.49 36.31 2.32
2005 3789 7.713073 TGACTGTGCATATTACGGAATATTTGA 59.287 33.333 10.31 0.00 36.31 2.69
2006 3790 8.445275 ACTGTGCATATTACGGAATATTTGAA 57.555 30.769 10.31 0.00 36.31 2.69
2007 3791 8.898761 ACTGTGCATATTACGGAATATTTGAAA 58.101 29.630 10.31 0.00 36.31 2.69
2008 3792 9.385902 CTGTGCATATTACGGAATATTTGAAAG 57.614 33.333 10.31 0.00 36.31 2.62
2009 3793 9.114952 TGTGCATATTACGGAATATTTGAAAGA 57.885 29.630 10.31 0.00 36.31 2.52
2010 3794 9.599322 GTGCATATTACGGAATATTTGAAAGAG 57.401 33.333 10.31 0.00 36.31 2.85
2034 3818 1.486310 CACGGATGGAGGAAATCAGGA 59.514 52.381 0.00 0.00 0.00 3.86
2048 3832 4.354943 AGGAGGAGGGGGTGGTGG 62.355 72.222 0.00 0.00 0.00 4.61
2049 3833 4.348495 GGAGGAGGGGGTGGTGGA 62.348 72.222 0.00 0.00 0.00 4.02
2050 3834 3.009714 GAGGAGGGGGTGGTGGAC 61.010 72.222 0.00 0.00 0.00 4.02
2051 3835 3.542602 AGGAGGGGGTGGTGGACT 61.543 66.667 0.00 0.00 0.00 3.85
2052 3836 3.330720 GGAGGGGGTGGTGGACTG 61.331 72.222 0.00 0.00 0.00 3.51
2053 3837 3.330720 GAGGGGGTGGTGGACTGG 61.331 72.222 0.00 0.00 0.00 4.00
2054 3838 4.202030 AGGGGGTGGTGGACTGGT 62.202 66.667 0.00 0.00 0.00 4.00
2055 3839 3.966543 GGGGGTGGTGGACTGGTG 61.967 72.222 0.00 0.00 0.00 4.17
2056 3840 3.966543 GGGGTGGTGGACTGGTGG 61.967 72.222 0.00 0.00 0.00 4.61
2072 3856 7.393234 TGGACTGGTGGTAAATGATCTTTTTAG 59.607 37.037 11.41 4.95 0.00 1.85
2398 4186 6.601613 ACAAACATTGGACAACAAGAGTCTAA 59.398 34.615 0.00 0.00 43.48 2.10
2522 4318 0.878523 CGGGAGACTTGCAACGTCAA 60.879 55.000 22.54 0.00 33.89 3.18
2608 4404 1.066215 AGTATTGGCATGACGCAGACA 60.066 47.619 0.00 0.00 45.17 3.41
2754 4553 1.410517 CTCATCTTGGCTCGGCTTCTA 59.589 52.381 0.00 0.00 0.00 2.10
2764 4563 3.553302 GGCTCGGCTTCTATACTTCTTCC 60.553 52.174 0.00 0.00 0.00 3.46
2864 4663 3.097614 ACCAACTTCACCTAGTAGCGAT 58.902 45.455 0.00 0.00 0.00 4.58
3064 4864 8.857694 CCTAGAGGGTTGTTCTACAAAAATTA 57.142 34.615 0.00 0.00 40.15 1.40
3146 4954 0.927029 GGGGAGTAGGGCTGGAATTT 59.073 55.000 0.00 0.00 0.00 1.82
3155 4963 6.731467 AGTAGGGCTGGAATTTAAAATCTCA 58.269 36.000 3.38 0.08 0.00 3.27
3194 5002 2.594654 GAGCAACTCGTGACATAGTTCG 59.405 50.000 3.80 2.73 33.72 3.95
3329 5137 6.219537 TGATGAGAAGATATACTCCCTCCA 57.780 41.667 0.00 0.00 31.68 3.86
3338 5146 3.953542 ATACTCCCTCCATCCCAAAAC 57.046 47.619 0.00 0.00 0.00 2.43
3341 5149 2.383338 ACTCCCTCCATCCCAAAACAAT 59.617 45.455 0.00 0.00 0.00 2.71
3349 5157 5.549347 TCCATCCCAAAACAATTGTCATTG 58.451 37.500 21.48 21.48 44.90 2.82
3356 5164 8.428063 TCCCAAAACAATTGTCATTGATTTAGT 58.572 29.630 26.48 2.72 41.18 2.24
3391 5199 3.744238 CCCCCGTCTCAAAATTTTTGT 57.256 42.857 18.69 0.00 0.00 2.83
3392 5200 3.649073 CCCCCGTCTCAAAATTTTTGTC 58.351 45.455 18.69 11.09 0.00 3.18
3393 5201 3.320826 CCCCCGTCTCAAAATTTTTGTCT 59.679 43.478 18.69 0.00 0.00 3.41
3394 5202 4.202212 CCCCCGTCTCAAAATTTTTGTCTT 60.202 41.667 18.69 0.00 0.00 3.01
3395 5203 4.744631 CCCCGTCTCAAAATTTTTGTCTTG 59.255 41.667 18.69 9.64 0.00 3.02
3396 5204 4.744631 CCCGTCTCAAAATTTTTGTCTTGG 59.255 41.667 18.69 15.85 0.00 3.61
3397 5205 5.451242 CCCGTCTCAAAATTTTTGTCTTGGA 60.451 40.000 18.69 9.57 0.00 3.53
3398 5206 6.215845 CCGTCTCAAAATTTTTGTCTTGGAT 58.784 36.000 18.69 0.00 0.00 3.41
3399 5207 6.701400 CCGTCTCAAAATTTTTGTCTTGGATT 59.299 34.615 18.69 0.00 0.00 3.01
3400 5208 7.865385 CCGTCTCAAAATTTTTGTCTTGGATTA 59.135 33.333 18.69 0.00 0.00 1.75
3401 5209 8.905702 CGTCTCAAAATTTTTGTCTTGGATTAG 58.094 33.333 18.69 7.98 0.00 1.73
3402 5210 9.750125 GTCTCAAAATTTTTGTCTTGGATTAGT 57.250 29.630 18.69 0.00 0.00 2.24
3403 5211 9.965824 TCTCAAAATTTTTGTCTTGGATTAGTC 57.034 29.630 18.69 0.00 0.00 2.59
3404 5212 9.971922 CTCAAAATTTTTGTCTTGGATTAGTCT 57.028 29.630 18.69 0.00 0.00 3.24
3411 5219 9.582431 TTTTTGTCTTGGATTAGTCTAGATACG 57.418 33.333 0.00 0.00 0.00 3.06
3412 5220 6.879276 TGTCTTGGATTAGTCTAGATACGG 57.121 41.667 0.00 0.00 0.00 4.02
3413 5221 6.598503 TGTCTTGGATTAGTCTAGATACGGA 58.401 40.000 0.00 0.00 0.00 4.69
3414 5222 7.232188 TGTCTTGGATTAGTCTAGATACGGAT 58.768 38.462 0.00 0.00 0.00 4.18
3415 5223 7.175119 TGTCTTGGATTAGTCTAGATACGGATG 59.825 40.741 0.00 0.00 0.00 3.51
3416 5224 7.175293 GTCTTGGATTAGTCTAGATACGGATGT 59.825 40.741 0.00 0.00 0.00 3.06
3417 5225 8.380867 TCTTGGATTAGTCTAGATACGGATGTA 58.619 37.037 0.00 0.00 34.45 2.29
3418 5226 9.179909 CTTGGATTAGTCTAGATACGGATGTAT 57.820 37.037 0.00 0.00 43.97 2.29
3433 5241 9.944376 ATACGGATGTATCTAATGCTAAAATGT 57.056 29.630 0.00 0.00 36.56 2.71
3434 5242 8.087982 ACGGATGTATCTAATGCTAAAATGTG 57.912 34.615 0.00 0.00 0.00 3.21
3435 5243 7.931407 ACGGATGTATCTAATGCTAAAATGTGA 59.069 33.333 0.00 0.00 0.00 3.58
3436 5244 8.223769 CGGATGTATCTAATGCTAAAATGTGAC 58.776 37.037 0.00 0.00 0.00 3.67
3437 5245 9.277783 GGATGTATCTAATGCTAAAATGTGACT 57.722 33.333 0.00 0.00 0.00 3.41
3440 5248 9.665719 TGTATCTAATGCTAAAATGTGACTTGA 57.334 29.630 0.00 0.00 0.00 3.02
3444 5252 9.665719 TCTAATGCTAAAATGTGACTTGATACA 57.334 29.630 0.00 0.00 0.00 2.29
3480 5288 9.884465 AGACAAATTTAAGACGAGAATTTTGAG 57.116 29.630 0.00 0.00 32.35 3.02
3481 5289 9.878599 GACAAATTTAAGACGAGAATTTTGAGA 57.121 29.630 0.00 0.00 32.35 3.27
3482 5290 9.665264 ACAAATTTAAGACGAGAATTTTGAGAC 57.335 29.630 0.00 0.00 32.35 3.36
3483 5291 8.831372 CAAATTTAAGACGAGAATTTTGAGACG 58.169 33.333 0.00 0.00 32.35 4.18
3484 5292 6.462073 TTTAAGACGAGAATTTTGAGACGG 57.538 37.500 0.00 0.00 0.00 4.79
3485 5293 3.936372 AGACGAGAATTTTGAGACGGA 57.064 42.857 0.00 0.00 0.00 4.69
3486 5294 3.839293 AGACGAGAATTTTGAGACGGAG 58.161 45.455 0.00 0.00 0.00 4.63
3487 5295 2.924290 GACGAGAATTTTGAGACGGAGG 59.076 50.000 0.00 0.00 0.00 4.30
3488 5296 2.271800 CGAGAATTTTGAGACGGAGGG 58.728 52.381 0.00 0.00 0.00 4.30
3489 5297 2.094182 CGAGAATTTTGAGACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
3490 5298 3.526534 GAGAATTTTGAGACGGAGGGAG 58.473 50.000 0.00 0.00 0.00 4.30
3491 5299 2.907042 AGAATTTTGAGACGGAGGGAGT 59.093 45.455 0.00 0.00 0.00 3.85
3492 5300 4.094476 AGAATTTTGAGACGGAGGGAGTA 58.906 43.478 0.00 0.00 0.00 2.59
3493 5301 3.889520 ATTTTGAGACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
3494 5302 2.599408 TTTGAGACGGAGGGAGTACT 57.401 50.000 0.00 0.00 0.00 2.73
3501 5309 5.826737 TGAGACGGAGGGAGTACTAAATAAG 59.173 44.000 0.00 0.00 0.00 1.73
3506 5314 5.049543 CGGAGGGAGTACTAAATAAGAGACG 60.050 48.000 0.00 0.00 0.00 4.18
3516 5324 9.182933 GTACTAAATAAGAGACGCTTATCTTGG 57.817 37.037 10.10 11.41 46.52 3.61
3531 5339 1.345741 TCTTGGAAGAGAGTGTGCCAG 59.654 52.381 0.00 0.00 0.00 4.85
3537 5345 2.393271 AGAGAGTGTGCCAGTATTGC 57.607 50.000 0.00 0.00 0.00 3.56
3545 5353 4.156556 AGTGTGCCAGTATTGCTGTTATTG 59.843 41.667 0.98 0.00 43.55 1.90
3605 5413 9.679661 TTGAAAGAGAGTGTGCCAATATTATTA 57.320 29.630 0.00 0.00 0.00 0.98
3648 5462 9.522804 GTACTAAATCAGAGACACTTATCTTGG 57.477 37.037 0.00 0.00 0.00 3.61
3669 5483 3.758554 GGAACAGAGTGTGCCAATATTGT 59.241 43.478 14.25 0.00 45.81 2.71
3719 5926 1.432852 ATCCTGATGGGCTGGGGATG 61.433 60.000 0.00 0.00 35.72 3.51
3727 5934 3.530067 GCTGGGGATGCCACATTC 58.470 61.111 5.30 0.00 35.80 2.67
3746 5953 1.913419 TCCCTCTAACCATCCAACCAC 59.087 52.381 0.00 0.00 0.00 4.16
3753 5960 2.470057 ACCATCCAACCACAGGTTTT 57.530 45.000 0.00 0.00 44.33 2.43
3755 5962 1.344114 CCATCCAACCACAGGTTTTGG 59.656 52.381 0.00 0.00 44.33 3.28
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.830477 AGTCAGAGGAGGAGAATGTGC 59.170 52.381 0.00 0.00 0.00 4.57
46 47 2.174639 GAGGATGAGTCAGAGGAGGAGA 59.825 54.545 0.00 0.00 0.00 3.71
58 59 0.560688 GGAGGAGGAGGAGGATGAGT 59.439 60.000 0.00 0.00 0.00 3.41
243 254 2.423538 GTCCGCTGCCATCACTTTTTAT 59.576 45.455 0.00 0.00 0.00 1.40
245 256 0.598065 GTCCGCTGCCATCACTTTTT 59.402 50.000 0.00 0.00 0.00 1.94
246 257 0.537143 TGTCCGCTGCCATCACTTTT 60.537 50.000 0.00 0.00 0.00 2.27
270 284 2.315763 ACCATCCATCCACATTTCCCTT 59.684 45.455 0.00 0.00 0.00 3.95
274 288 4.437682 TCCTACCATCCATCCACATTTC 57.562 45.455 0.00 0.00 0.00 2.17
373 387 2.911484 CGTCACCTCCGTCGGACAA 61.911 63.158 10.71 0.00 0.00 3.18
374 388 3.359523 CGTCACCTCCGTCGGACA 61.360 66.667 10.71 0.00 0.00 4.02
413 427 3.961414 TCCAGCCGGAAACACCCC 61.961 66.667 5.05 0.00 38.83 4.95
430 444 2.195567 TCCGACTGACGAACGGGTT 61.196 57.895 0.00 0.00 45.61 4.11
467 482 0.611200 TATGGGGCGAATATGGACCG 59.389 55.000 0.00 0.00 31.28 4.79
470 485 4.627741 GCCTAAATATGGGGCGAATATGGA 60.628 45.833 0.00 0.00 36.37 3.41
501 522 2.586792 GAGCTGACCGGCATCCTT 59.413 61.111 0.00 0.00 34.17 3.36
531 552 0.463116 AGACAAACGCCTCAAACGGT 60.463 50.000 0.00 0.00 34.00 4.83
597 618 3.684788 CCAAATAGACCTCAAACACTCGG 59.315 47.826 0.00 0.00 0.00 4.63
600 621 3.814316 GCCCCAAATAGACCTCAAACACT 60.814 47.826 0.00 0.00 0.00 3.55
602 623 2.109128 TGCCCCAAATAGACCTCAAACA 59.891 45.455 0.00 0.00 0.00 2.83
611 632 0.988832 AACCGAGTGCCCCAAATAGA 59.011 50.000 0.00 0.00 0.00 1.98
629 650 8.982091 AATAGTACTACATGAGAGCTCTACAA 57.018 34.615 18.25 5.92 0.00 2.41
893 989 3.014623 GAGGGGAAAGATTTGGTTACCG 58.985 50.000 0.00 0.00 0.00 4.02
978 1087 1.595382 GGTCGGGATGGCTTGATCG 60.595 63.158 0.00 0.00 0.00 3.69
991 1100 0.390860 CTTAGCTCCATGAGGGTCGG 59.609 60.000 0.00 0.00 38.11 4.79
992 1101 0.249657 GCTTAGCTCCATGAGGGTCG 60.250 60.000 0.00 0.00 38.11 4.79
993 1102 0.249657 CGCTTAGCTCCATGAGGGTC 60.250 60.000 1.76 0.00 38.11 4.46
994 1103 1.826024 CGCTTAGCTCCATGAGGGT 59.174 57.895 1.76 0.00 38.11 4.34
995 1104 1.596477 GCGCTTAGCTCCATGAGGG 60.596 63.158 0.00 0.00 44.04 4.30
1923 3351 7.664082 TTCAAAAACTATTCAGAGAGCAGAG 57.336 36.000 0.00 0.00 0.00 3.35
1957 3386 2.460757 TGTTAACGGTGGTCCTAAGC 57.539 50.000 0.26 0.00 0.00 3.09
2004 3788 3.003480 CCTCCATCCGTGAAACTCTTTC 58.997 50.000 0.00 0.00 40.08 2.62
2005 3789 2.637872 TCCTCCATCCGTGAAACTCTTT 59.362 45.455 0.00 0.00 31.75 2.52
2006 3790 2.257207 TCCTCCATCCGTGAAACTCTT 58.743 47.619 0.00 0.00 31.75 2.85
2007 3791 1.938585 TCCTCCATCCGTGAAACTCT 58.061 50.000 0.00 0.00 31.75 3.24
2008 3792 2.762535 TTCCTCCATCCGTGAAACTC 57.237 50.000 0.00 0.00 31.75 3.01
2009 3793 3.009033 TGATTTCCTCCATCCGTGAAACT 59.991 43.478 0.00 0.00 30.27 2.66
2010 3794 3.343617 TGATTTCCTCCATCCGTGAAAC 58.656 45.455 0.00 0.00 30.27 2.78
2034 3818 3.542602 AGTCCACCACCCCCTCCT 61.543 66.667 0.00 0.00 0.00 3.69
2048 3832 7.393515 ACCTAAAAAGATCATTTACCACCAGTC 59.606 37.037 0.00 0.00 0.00 3.51
2049 3833 7.176690 CACCTAAAAAGATCATTTACCACCAGT 59.823 37.037 0.00 0.00 0.00 4.00
2050 3834 7.393234 TCACCTAAAAAGATCATTTACCACCAG 59.607 37.037 0.00 0.00 0.00 4.00
2051 3835 7.235079 TCACCTAAAAAGATCATTTACCACCA 58.765 34.615 0.00 0.00 0.00 4.17
2052 3836 7.696992 TCACCTAAAAAGATCATTTACCACC 57.303 36.000 0.00 0.00 0.00 4.61
2053 3837 8.244113 CCTTCACCTAAAAAGATCATTTACCAC 58.756 37.037 0.00 0.00 0.00 4.16
2054 3838 7.947890 ACCTTCACCTAAAAAGATCATTTACCA 59.052 33.333 0.00 0.00 0.00 3.25
2055 3839 8.244113 CACCTTCACCTAAAAAGATCATTTACC 58.756 37.037 0.00 0.00 0.00 2.85
2056 3840 8.244113 CCACCTTCACCTAAAAAGATCATTTAC 58.756 37.037 0.00 0.00 0.00 2.01
2072 3856 5.784578 ATTTCAACTTAACCACCTTCACC 57.215 39.130 0.00 0.00 0.00 4.02
2177 3961 5.204292 AGATTATCCCCCTGCTTTCTTTTC 58.796 41.667 0.00 0.00 0.00 2.29
2179 3963 4.888626 AGATTATCCCCCTGCTTTCTTT 57.111 40.909 0.00 0.00 0.00 2.52
2180 3964 4.386873 GGAAGATTATCCCCCTGCTTTCTT 60.387 45.833 0.00 0.00 33.05 2.52
2181 3965 3.139211 GGAAGATTATCCCCCTGCTTTCT 59.861 47.826 0.00 0.00 33.05 2.52
2522 4318 2.291800 CCCTCCACAATCTCAAACCCAT 60.292 50.000 0.00 0.00 0.00 4.00
2608 4404 3.117888 TCAAACCTCTCTGGCTTGAACTT 60.118 43.478 0.00 0.00 45.00 2.66
2754 4553 3.137360 GGAGGCTCCAATGGAAGAAGTAT 59.863 47.826 28.55 0.00 36.28 2.12
2764 4563 2.123982 GGCTGGGAGGCTCCAATG 60.124 66.667 33.27 22.23 38.64 2.82
2864 4663 6.438259 TTTTCATCGGAAAATTATACGGCA 57.562 33.333 0.00 0.00 45.51 5.69
2925 4725 2.375173 ACCTAGCGAAAGTTAACCCG 57.625 50.000 0.88 5.21 0.00 5.28
2998 4798 7.827236 AGAAATCGTTACAGGGATACAAATGAA 59.173 33.333 0.00 0.00 39.74 2.57
3064 4864 3.527533 TGTAGTTGCTCGCCGAATTATT 58.472 40.909 0.00 0.00 0.00 1.40
3116 4924 1.673168 CTACTCCCCTCATTGCAAGC 58.327 55.000 4.94 0.00 0.00 4.01
3178 4986 1.132643 GAGCCGAACTATGTCACGAGT 59.867 52.381 0.00 0.00 0.00 4.18
3194 5002 2.066262 TCAACAAGTTCGATTCGAGCC 58.934 47.619 17.69 9.05 37.80 4.70
3204 5012 3.872771 TCAACCCGTTACTCAACAAGTTC 59.127 43.478 0.00 0.00 39.55 3.01
3246 5054 7.043391 GCTTCGCTCATTAAACTTGTTCTTTTT 60.043 33.333 0.00 0.00 0.00 1.94
3267 5075 8.709646 AGTTAAATGAGTAACTTGTTAGCTTCG 58.290 33.333 0.00 0.00 40.63 3.79
3302 5110 5.478679 AGGGAGTATATCTTCTCATCAACGG 59.521 44.000 0.00 0.00 32.93 4.44
3329 5137 9.439500 CTAAATCAATGACAATTGTTTTGGGAT 57.561 29.630 23.81 16.14 42.01 3.85
3371 5179 3.320826 AGACAAAAATTTTGAGACGGGGG 59.679 43.478 23.39 0.00 0.00 5.40
3372 5180 4.584327 AGACAAAAATTTTGAGACGGGG 57.416 40.909 23.39 0.00 0.00 5.73
3373 5181 4.744631 CCAAGACAAAAATTTTGAGACGGG 59.255 41.667 23.39 13.66 0.00 5.28
3374 5182 5.587289 TCCAAGACAAAAATTTTGAGACGG 58.413 37.500 23.39 16.80 0.00 4.79
3375 5183 7.698836 AATCCAAGACAAAAATTTTGAGACG 57.301 32.000 23.39 9.73 0.00 4.18
3376 5184 9.750125 ACTAATCCAAGACAAAAATTTTGAGAC 57.250 29.630 23.39 13.84 0.00 3.36
3377 5185 9.965824 GACTAATCCAAGACAAAAATTTTGAGA 57.034 29.630 23.39 12.08 0.00 3.27
3378 5186 9.971922 AGACTAATCCAAGACAAAAATTTTGAG 57.028 29.630 23.39 10.15 0.00 3.02
3385 5193 9.582431 CGTATCTAGACTAATCCAAGACAAAAA 57.418 33.333 0.00 0.00 0.00 1.94
3386 5194 8.195436 CCGTATCTAGACTAATCCAAGACAAAA 58.805 37.037 0.00 0.00 0.00 2.44
3387 5195 7.558807 TCCGTATCTAGACTAATCCAAGACAAA 59.441 37.037 0.00 0.00 0.00 2.83
3388 5196 7.058525 TCCGTATCTAGACTAATCCAAGACAA 58.941 38.462 0.00 0.00 0.00 3.18
3389 5197 6.598503 TCCGTATCTAGACTAATCCAAGACA 58.401 40.000 0.00 0.00 0.00 3.41
3390 5198 7.175293 ACATCCGTATCTAGACTAATCCAAGAC 59.825 40.741 0.00 0.00 0.00 3.01
3391 5199 7.232188 ACATCCGTATCTAGACTAATCCAAGA 58.768 38.462 0.00 0.00 0.00 3.02
3392 5200 7.455641 ACATCCGTATCTAGACTAATCCAAG 57.544 40.000 0.00 0.00 0.00 3.61
3407 5215 9.944376 ACATTTTAGCATTAGATACATCCGTAT 57.056 29.630 0.00 0.00 41.16 3.06
3408 5216 9.203421 CACATTTTAGCATTAGATACATCCGTA 57.797 33.333 0.00 0.00 0.00 4.02
3409 5217 7.931407 TCACATTTTAGCATTAGATACATCCGT 59.069 33.333 0.00 0.00 0.00 4.69
3410 5218 8.223769 GTCACATTTTAGCATTAGATACATCCG 58.776 37.037 0.00 0.00 0.00 4.18
3411 5219 9.277783 AGTCACATTTTAGCATTAGATACATCC 57.722 33.333 0.00 0.00 0.00 3.51
3414 5222 9.665719 TCAAGTCACATTTTAGCATTAGATACA 57.334 29.630 0.00 0.00 0.00 2.29
3418 5226 9.665719 TGTATCAAGTCACATTTTAGCATTAGA 57.334 29.630 0.00 0.00 0.00 2.10
3454 5262 9.884465 CTCAAAATTCTCGTCTTAAATTTGTCT 57.116 29.630 0.00 0.00 33.95 3.41
3455 5263 9.878599 TCTCAAAATTCTCGTCTTAAATTTGTC 57.121 29.630 0.00 0.00 33.95 3.18
3456 5264 9.665264 GTCTCAAAATTCTCGTCTTAAATTTGT 57.335 29.630 0.00 0.00 33.95 2.83
3457 5265 8.831372 CGTCTCAAAATTCTCGTCTTAAATTTG 58.169 33.333 0.00 0.00 33.95 2.32
3458 5266 8.015658 CCGTCTCAAAATTCTCGTCTTAAATTT 58.984 33.333 0.00 0.00 34.86 1.82
3459 5267 7.386848 TCCGTCTCAAAATTCTCGTCTTAAATT 59.613 33.333 0.00 0.00 0.00 1.82
3460 5268 6.872020 TCCGTCTCAAAATTCTCGTCTTAAAT 59.128 34.615 0.00 0.00 0.00 1.40
3461 5269 6.218019 TCCGTCTCAAAATTCTCGTCTTAAA 58.782 36.000 0.00 0.00 0.00 1.52
3462 5270 5.775686 TCCGTCTCAAAATTCTCGTCTTAA 58.224 37.500 0.00 0.00 0.00 1.85
3463 5271 5.381174 TCCGTCTCAAAATTCTCGTCTTA 57.619 39.130 0.00 0.00 0.00 2.10
3464 5272 4.238514 CTCCGTCTCAAAATTCTCGTCTT 58.761 43.478 0.00 0.00 0.00 3.01
3465 5273 3.367498 CCTCCGTCTCAAAATTCTCGTCT 60.367 47.826 0.00 0.00 0.00 4.18
3466 5274 2.924290 CCTCCGTCTCAAAATTCTCGTC 59.076 50.000 0.00 0.00 0.00 4.20
3467 5275 2.353803 CCCTCCGTCTCAAAATTCTCGT 60.354 50.000 0.00 0.00 0.00 4.18
3468 5276 2.094182 TCCCTCCGTCTCAAAATTCTCG 60.094 50.000 0.00 0.00 0.00 4.04
3469 5277 3.055747 ACTCCCTCCGTCTCAAAATTCTC 60.056 47.826 0.00 0.00 0.00 2.87
3470 5278 2.907042 ACTCCCTCCGTCTCAAAATTCT 59.093 45.455 0.00 0.00 0.00 2.40
3471 5279 3.336138 ACTCCCTCCGTCTCAAAATTC 57.664 47.619 0.00 0.00 0.00 2.17
3472 5280 3.838903 AGTACTCCCTCCGTCTCAAAATT 59.161 43.478 0.00 0.00 0.00 1.82
3473 5281 3.442076 AGTACTCCCTCCGTCTCAAAAT 58.558 45.455 0.00 0.00 0.00 1.82
3474 5282 2.885616 AGTACTCCCTCCGTCTCAAAA 58.114 47.619 0.00 0.00 0.00 2.44
3475 5283 2.599408 AGTACTCCCTCCGTCTCAAA 57.401 50.000 0.00 0.00 0.00 2.69
3476 5284 3.726557 TTAGTACTCCCTCCGTCTCAA 57.273 47.619 0.00 0.00 0.00 3.02
3477 5285 3.726557 TTTAGTACTCCCTCCGTCTCA 57.273 47.619 0.00 0.00 0.00 3.27
3478 5286 6.060788 TCTTATTTAGTACTCCCTCCGTCTC 58.939 44.000 0.00 0.00 0.00 3.36
3479 5287 6.011122 TCTTATTTAGTACTCCCTCCGTCT 57.989 41.667 0.00 0.00 0.00 4.18
3480 5288 6.017192 GTCTCTTATTTAGTACTCCCTCCGTC 60.017 46.154 0.00 0.00 0.00 4.79
3481 5289 5.827267 GTCTCTTATTTAGTACTCCCTCCGT 59.173 44.000 0.00 0.00 0.00 4.69
3482 5290 5.049543 CGTCTCTTATTTAGTACTCCCTCCG 60.050 48.000 0.00 0.00 0.00 4.63
3483 5291 5.278414 GCGTCTCTTATTTAGTACTCCCTCC 60.278 48.000 0.00 0.00 0.00 4.30
3484 5292 5.532032 AGCGTCTCTTATTTAGTACTCCCTC 59.468 44.000 0.00 0.00 0.00 4.30
3485 5293 5.447757 AGCGTCTCTTATTTAGTACTCCCT 58.552 41.667 0.00 0.00 0.00 4.20
3486 5294 5.771153 AGCGTCTCTTATTTAGTACTCCC 57.229 43.478 0.00 0.00 0.00 4.30
3487 5295 8.785946 AGATAAGCGTCTCTTATTTAGTACTCC 58.214 37.037 0.00 0.00 45.45 3.85
3489 5297 9.953697 CAAGATAAGCGTCTCTTATTTAGTACT 57.046 33.333 0.00 0.00 45.45 2.73
3490 5298 9.182933 CCAAGATAAGCGTCTCTTATTTAGTAC 57.817 37.037 0.19 0.00 45.45 2.73
3491 5299 9.128404 TCCAAGATAAGCGTCTCTTATTTAGTA 57.872 33.333 0.19 0.00 45.45 1.82
3492 5300 8.008513 TCCAAGATAAGCGTCTCTTATTTAGT 57.991 34.615 0.19 0.00 45.45 2.24
3493 5301 8.873215 TTCCAAGATAAGCGTCTCTTATTTAG 57.127 34.615 0.19 0.00 45.45 1.85
3494 5302 8.692710 TCTTCCAAGATAAGCGTCTCTTATTTA 58.307 33.333 0.19 0.00 45.45 1.40
3501 5309 4.097286 ACTCTCTTCCAAGATAAGCGTCTC 59.903 45.833 0.00 0.00 33.93 3.36
3506 5314 3.620821 GCACACTCTCTTCCAAGATAAGC 59.379 47.826 0.00 0.00 33.93 3.09
3516 5324 2.675348 GCAATACTGGCACACTCTCTTC 59.325 50.000 0.00 0.00 0.00 2.87
3531 5339 9.410556 ACAAAGTTGATTCAATAACAGCAATAC 57.589 29.630 1.78 0.00 0.00 1.89
3567 5375 6.127026 ACACTCTCTTTCAAGGTAAGTGTCTT 60.127 38.462 12.74 0.00 38.14 3.01
3577 5385 2.260844 TGGCACACTCTCTTTCAAGG 57.739 50.000 0.00 0.00 0.00 3.61
3648 5462 5.376854 AACAATATTGGCACACTCTGTTC 57.623 39.130 19.37 0.00 39.29 3.18
3669 5483 3.902261 GTGCACATCACAGATGACAAA 57.098 42.857 13.17 0.00 44.98 2.83
3692 5506 1.918262 AGCCCATCAGGATTCAAGTCA 59.082 47.619 0.00 0.00 38.24 3.41
3719 5926 2.576615 GATGGTTAGAGGGAATGTGGC 58.423 52.381 0.00 0.00 0.00 5.01
3727 5934 1.633432 TGTGGTTGGATGGTTAGAGGG 59.367 52.381 0.00 0.00 0.00 4.30
3746 5953 1.946768 TCTCAAGCGAACCAAAACCTG 59.053 47.619 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.