Multiple sequence alignment - TraesCS2A01G424100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G424100 chr2A 100.000 3425 0 0 1 3425 678611782 678608358 0.000000e+00 6325.0
1 TraesCS2A01G424100 chr2A 83.272 1357 199 22 1049 2390 678547137 678545794 0.000000e+00 1223.0
2 TraesCS2A01G424100 chr2A 84.290 662 89 9 1773 2428 678450262 678449610 1.730000e-177 632.0
3 TraesCS2A01G424100 chr2A 92.614 176 11 2 781 956 706515346 706515173 5.670000e-63 252.0
4 TraesCS2A01G424100 chr2A 85.294 238 31 3 2998 3231 678452534 678452297 3.410000e-60 243.0
5 TraesCS2A01G424100 chr2A 90.608 181 15 1 781 959 71802573 71802753 4.420000e-59 239.0
6 TraesCS2A01G424100 chr2A 92.308 52 4 0 981 1032 678547304 678547253 1.320000e-09 75.0
7 TraesCS2A01G424100 chr2B 90.787 2464 159 20 987 3425 636764912 636762492 0.000000e+00 3230.0
8 TraesCS2A01G424100 chr2B 90.169 1180 108 4 1148 2322 634191504 634192680 0.000000e+00 1530.0
9 TraesCS2A01G424100 chr2B 83.038 1185 166 17 1154 2322 636555842 636554677 0.000000e+00 1042.0
10 TraesCS2A01G424100 chr2B 84.515 691 93 6 1038 1716 636568891 636568203 0.000000e+00 671.0
11 TraesCS2A01G424100 chr2B 93.646 362 18 4 421 778 636765308 636764948 1.400000e-148 536.0
12 TraesCS2A01G424100 chr2B 83.192 589 89 6 1804 2390 636568180 636567600 6.510000e-147 531.0
13 TraesCS2A01G424100 chr2B 87.558 217 23 3 3018 3231 636563790 636563575 7.340000e-62 248.0
14 TraesCS2A01G424100 chr2B 90.556 180 16 1 781 960 133700097 133700275 1.590000e-58 237.0
15 TraesCS2A01G424100 chr2B 90.503 179 15 2 781 959 691786759 691786935 5.710000e-58 235.0
16 TraesCS2A01G424100 chr2B 95.556 45 2 0 981 1025 636569052 636569008 4.740000e-09 73.1
17 TraesCS2A01G424100 chr2D 91.090 1156 95 4 1468 2622 535479693 535478545 0.000000e+00 1557.0
18 TraesCS2A01G424100 chr2D 83.638 1369 194 19 1038 2389 535286920 535285565 0.000000e+00 1260.0
19 TraesCS2A01G424100 chr2D 92.298 779 50 10 2651 3425 535478546 535477774 0.000000e+00 1098.0
20 TraesCS2A01G424100 chr2D 92.131 521 19 4 973 1471 535555588 535555068 0.000000e+00 715.0
21 TraesCS2A01G424100 chr2D 86.877 602 65 6 1038 1627 535239539 535238940 0.000000e+00 662.0
22 TraesCS2A01G424100 chr2D 86.897 435 50 6 1 432 503581196 503580766 6.650000e-132 481.0
23 TraesCS2A01G424100 chr2D 92.628 312 12 6 465 767 535557570 535557261 4.060000e-119 438.0
24 TraesCS2A01G424100 chr2D 81.274 518 87 8 1773 2289 535272324 535271816 8.850000e-111 411.0
25 TraesCS2A01G424100 chr2D 87.097 217 24 3 3018 3231 535283294 535283079 3.410000e-60 243.0
26 TraesCS2A01G424100 chr2D 91.525 59 5 0 3366 3424 13361824 13361882 7.880000e-12 82.4
27 TraesCS2A01G424100 chr2D 95.556 45 2 0 981 1025 535287069 535287025 4.740000e-09 73.1
28 TraesCS2A01G424100 chr2D 84.615 65 9 1 3361 3425 150927569 150927506 2.850000e-06 63.9
29 TraesCS2A01G424100 chr2D 94.444 36 2 0 2800 2835 129516153 129516188 4.770000e-04 56.5
30 TraesCS2A01G424100 chr3A 92.272 427 25 7 1 426 595116726 595116307 1.760000e-167 599.0
31 TraesCS2A01G424100 chr3A 90.758 422 30 6 1 420 703173487 703173901 3.860000e-154 555.0
32 TraesCS2A01G424100 chr3A 93.855 179 10 1 781 959 184442 184619 5.630000e-68 268.0
33 TraesCS2A01G424100 chr3A 96.970 33 1 0 2803 2835 175806222 175806190 4.770000e-04 56.5
34 TraesCS2A01G424100 chr7B 85.023 434 59 6 1 432 334799955 334799526 1.460000e-118 436.0
35 TraesCS2A01G424100 chr7B 97.143 35 0 1 2801 2835 559563457 559563490 1.330000e-04 58.4
36 TraesCS2A01G424100 chr3D 84.932 438 57 8 1 431 260972313 260972748 5.250000e-118 435.0
37 TraesCS2A01G424100 chr4D 85.579 423 50 9 1 420 459256510 459256096 1.890000e-117 433.0
38 TraesCS2A01G424100 chr4D 85.082 429 48 11 1 424 478229828 478230245 1.140000e-114 424.0
39 TraesCS2A01G424100 chr4D 95.000 60 3 0 3366 3425 485769266 485769207 1.010000e-15 95.3
40 TraesCS2A01G424100 chr4A 85.176 425 59 4 1 422 650309244 650308821 1.890000e-117 433.0
41 TraesCS2A01G424100 chr4A 94.444 54 3 0 3365 3418 699017835 699017888 2.190000e-12 84.2
42 TraesCS2A01G424100 chr6B 85.176 425 58 4 1 422 481265403 481264981 6.790000e-117 431.0
43 TraesCS2A01G424100 chr6B 96.970 33 1 0 2803 2835 214324564 214324532 4.770000e-04 56.5
44 TraesCS2A01G424100 chr5D 82.301 339 51 3 1049 1378 443631354 443631692 5.590000e-73 285.0
45 TraesCS2A01G424100 chr3B 89.326 178 18 1 781 958 32815046 32814870 4.450000e-54 222.0
46 TraesCS2A01G424100 chr3B 88.333 60 7 0 3366 3425 357765153 357765212 4.740000e-09 73.1
47 TraesCS2A01G424100 chr3B 100.000 29 0 0 2803 2831 690564830 690564858 2.000000e-03 54.7
48 TraesCS2A01G424100 chr5B 87.568 185 19 4 784 966 16417446 16417264 9.630000e-51 211.0
49 TraesCS2A01G424100 chr5B 90.566 53 5 0 3366 3418 450567486 450567434 1.710000e-08 71.3
50 TraesCS2A01G424100 chr1B 88.333 60 7 0 3366 3425 22892827 22892886 4.740000e-09 73.1
51 TraesCS2A01G424100 chr5A 90.909 44 2 2 2804 2845 648811182 648811225 1.330000e-04 58.4
52 TraesCS2A01G424100 chr7A 100.000 29 0 0 2803 2831 577498956 577498928 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G424100 chr2A 678608358 678611782 3424 True 6325.000000 6325 100.000000 1 3425 1 chr2A.!!$R1 3424
1 TraesCS2A01G424100 chr2A 678545794 678547304 1510 True 649.000000 1223 87.790000 981 2390 2 chr2A.!!$R4 1409
2 TraesCS2A01G424100 chr2A 678449610 678452534 2924 True 437.500000 632 84.792000 1773 3231 2 chr2A.!!$R3 1458
3 TraesCS2A01G424100 chr2B 636762492 636765308 2816 True 1883.000000 3230 92.216500 421 3425 2 chr2B.!!$R3 3004
4 TraesCS2A01G424100 chr2B 634191504 634192680 1176 False 1530.000000 1530 90.169000 1148 2322 1 chr2B.!!$F2 1174
5 TraesCS2A01G424100 chr2B 636554677 636555842 1165 True 1042.000000 1042 83.038000 1154 2322 1 chr2B.!!$R1 1168
6 TraesCS2A01G424100 chr2B 636563575 636569052 5477 True 380.775000 671 87.705250 981 3231 4 chr2B.!!$R2 2250
7 TraesCS2A01G424100 chr2D 535477774 535479693 1919 True 1327.500000 1557 91.694000 1468 3425 2 chr2D.!!$R6 1957
8 TraesCS2A01G424100 chr2D 535238940 535239539 599 True 662.000000 662 86.877000 1038 1627 1 chr2D.!!$R3 589
9 TraesCS2A01G424100 chr2D 535555068 535557570 2502 True 576.500000 715 92.379500 465 1471 2 chr2D.!!$R7 1006
10 TraesCS2A01G424100 chr2D 535283079 535287069 3990 True 525.366667 1260 88.763667 981 3231 3 chr2D.!!$R5 2250
11 TraesCS2A01G424100 chr2D 535271816 535272324 508 True 411.000000 411 81.274000 1773 2289 1 chr2D.!!$R4 516

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
899 2561 0.03759 TGCCCCTCTGTAAATTGCGT 59.962 50.0 0.0 0.0 0.0 5.24 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2469 4365 0.17576 GGCATCTTAGGCTGTCGACA 59.824 55.0 18.88 18.88 0.0 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.113986 AGTGTGGCCTCTTGGTGC 59.886 61.111 3.32 0.00 35.27 5.01
23 24 2.980233 GCCTCTTGGTGCGCTGTT 60.980 61.111 9.73 0.00 35.27 3.16
25 26 1.283793 CCTCTTGGTGCGCTGTTTG 59.716 57.895 9.73 0.00 0.00 2.93
26 27 1.165907 CCTCTTGGTGCGCTGTTTGA 61.166 55.000 9.73 0.68 0.00 2.69
27 28 0.877071 CTCTTGGTGCGCTGTTTGAT 59.123 50.000 9.73 0.00 0.00 2.57
28 29 2.076100 CTCTTGGTGCGCTGTTTGATA 58.924 47.619 9.73 0.00 0.00 2.15
31 32 1.305219 TGGTGCGCTGTTTGATAGGC 61.305 55.000 9.73 0.00 0.00 3.93
34 35 0.521291 TGCGCTGTTTGATAGGCAAC 59.479 50.000 9.73 0.00 35.91 4.17
36 37 1.164411 CGCTGTTTGATAGGCAACCA 58.836 50.000 0.00 0.00 35.91 3.67
37 38 1.131126 CGCTGTTTGATAGGCAACCAG 59.869 52.381 0.00 0.00 46.35 4.00
38 39 2.927553 CTGTTTGATAGGCAACCAGC 57.072 50.000 0.00 0.00 39.64 4.85
52 53 2.260869 CCAGCAGGTCCGTGGTTTG 61.261 63.158 0.00 0.00 0.00 2.93
53 54 1.227823 CAGCAGGTCCGTGGTTTGA 60.228 57.895 0.00 0.00 0.00 2.69
54 55 0.817634 CAGCAGGTCCGTGGTTTGAA 60.818 55.000 0.00 0.00 0.00 2.69
55 56 0.110486 AGCAGGTCCGTGGTTTGAAT 59.890 50.000 0.00 0.00 0.00 2.57
56 57 0.958822 GCAGGTCCGTGGTTTGAATT 59.041 50.000 0.00 0.00 0.00 2.17
57 58 1.068541 GCAGGTCCGTGGTTTGAATTC 60.069 52.381 0.00 0.00 0.00 2.17
58 59 1.539827 CAGGTCCGTGGTTTGAATTCC 59.460 52.381 2.27 0.00 0.00 3.01
59 60 0.885879 GGTCCGTGGTTTGAATTCCC 59.114 55.000 2.27 0.00 0.00 3.97
60 61 1.546998 GGTCCGTGGTTTGAATTCCCT 60.547 52.381 2.27 0.00 0.00 4.20
61 62 2.235891 GTCCGTGGTTTGAATTCCCTT 58.764 47.619 2.27 0.00 0.00 3.95
62 63 2.228103 GTCCGTGGTTTGAATTCCCTTC 59.772 50.000 2.27 0.00 0.00 3.46
64 65 2.030274 CCGTGGTTTGAATTCCCTTCAC 60.030 50.000 2.27 6.09 43.54 3.18
65 66 2.350388 CGTGGTTTGAATTCCCTTCACG 60.350 50.000 19.24 19.24 43.54 4.35
66 67 1.611491 TGGTTTGAATTCCCTTCACGC 59.389 47.619 2.27 0.00 43.54 5.34
67 68 1.067846 GGTTTGAATTCCCTTCACGCC 60.068 52.381 2.27 0.00 43.54 5.68
68 69 1.611491 GTTTGAATTCCCTTCACGCCA 59.389 47.619 2.27 0.00 43.54 5.69
69 70 1.988293 TTGAATTCCCTTCACGCCAA 58.012 45.000 2.27 0.00 43.54 4.52
70 71 1.243902 TGAATTCCCTTCACGCCAAC 58.756 50.000 2.27 0.00 38.97 3.77
72 73 1.886542 GAATTCCCTTCACGCCAACTT 59.113 47.619 0.00 0.00 33.78 2.66
74 75 0.106918 TTCCCTTCACGCCAACTTGT 60.107 50.000 0.00 0.00 0.00 3.16
75 76 0.817634 TCCCTTCACGCCAACTTGTG 60.818 55.000 0.00 0.00 37.44 3.33
76 77 1.101049 CCCTTCACGCCAACTTGTGT 61.101 55.000 0.00 0.00 37.38 3.72
77 78 0.738389 CCTTCACGCCAACTTGTGTT 59.262 50.000 0.00 0.00 37.38 3.32
81 82 4.214545 CCTTCACGCCAACTTGTGTTTATA 59.785 41.667 0.00 0.00 37.38 0.98
82 83 5.106317 CCTTCACGCCAACTTGTGTTTATAT 60.106 40.000 0.00 0.00 37.38 0.86
83 84 5.950758 TCACGCCAACTTGTGTTTATATT 57.049 34.783 0.00 0.00 37.38 1.28
84 85 6.320494 TCACGCCAACTTGTGTTTATATTT 57.680 33.333 0.00 0.00 37.38 1.40
85 86 6.740110 TCACGCCAACTTGTGTTTATATTTT 58.260 32.000 0.00 0.00 37.38 1.82
87 88 7.168302 TCACGCCAACTTGTGTTTATATTTTTG 59.832 33.333 0.00 0.00 37.38 2.44
90 91 7.168302 CGCCAACTTGTGTTTATATTTTTGTGA 59.832 33.333 0.00 0.00 33.52 3.58
92 93 9.743057 CCAACTTGTGTTTATATTTTTGTGAGA 57.257 29.630 0.00 0.00 33.52 3.27
112 113 9.601971 TGTGAGAATTAATTAAAGTACAAACGC 57.398 29.630 1.21 0.00 0.00 4.84
113 114 8.773136 GTGAGAATTAATTAAAGTACAAACGCG 58.227 33.333 3.53 3.53 0.00 6.01
115 116 9.321590 GAGAATTAATTAAAGTACAAACGCGTT 57.678 29.630 20.79 20.79 0.00 4.84
117 118 8.438732 AATTAATTAAAGTACAAACGCGTTCC 57.561 30.769 26.77 13.31 0.00 3.62
118 119 5.678132 AATTAAAGTACAAACGCGTTCCT 57.322 34.783 26.77 15.35 0.00 3.36
119 120 4.455917 TTAAAGTACAAACGCGTTCCTG 57.544 40.909 26.77 22.51 0.00 3.86
120 121 1.944032 AAGTACAAACGCGTTCCTGT 58.056 45.000 26.84 26.84 0.00 4.00
122 123 2.669364 AGTACAAACGCGTTCCTGTAG 58.331 47.619 27.92 16.11 0.00 2.74
123 124 2.294233 AGTACAAACGCGTTCCTGTAGA 59.706 45.455 27.92 13.83 0.00 2.59
125 126 2.553086 ACAAACGCGTTCCTGTAGAAA 58.447 42.857 26.77 0.00 35.85 2.52
126 127 2.937799 ACAAACGCGTTCCTGTAGAAAA 59.062 40.909 26.77 0.00 35.85 2.29
127 128 3.374678 ACAAACGCGTTCCTGTAGAAAAA 59.625 39.130 26.77 0.00 35.85 1.94
147 148 3.837213 AAATAGTGTGCATGCAGTGTC 57.163 42.857 23.41 10.10 0.00 3.67
148 149 1.742761 ATAGTGTGCATGCAGTGTCC 58.257 50.000 23.41 9.67 0.00 4.02
150 151 2.110835 TGTGCATGCAGTGTCCGT 59.889 55.556 23.41 0.00 0.00 4.69
151 152 0.948623 GTGTGCATGCAGTGTCCGTA 60.949 55.000 23.41 0.00 0.00 4.02
153 154 0.165944 GTGCATGCAGTGTCCGTAAC 59.834 55.000 23.41 0.56 0.00 2.50
154 155 0.250081 TGCATGCAGTGTCCGTAACA 60.250 50.000 18.46 0.00 34.78 2.41
155 156 1.086696 GCATGCAGTGTCCGTAACAT 58.913 50.000 14.21 0.00 40.80 2.71
156 157 1.468520 GCATGCAGTGTCCGTAACATT 59.531 47.619 14.21 0.00 40.80 2.71
157 158 2.095263 GCATGCAGTGTCCGTAACATTT 60.095 45.455 14.21 0.00 40.80 2.32
185 186 8.680039 TTTCCAAGAATTAACTAAAGTTCGGA 57.320 30.769 0.00 0.00 39.31 4.55
186 187 7.900782 TCCAAGAATTAACTAAAGTTCGGAG 57.099 36.000 0.00 0.00 39.31 4.63
188 189 7.601508 TCCAAGAATTAACTAAAGTTCGGAGAC 59.398 37.037 0.00 0.00 39.31 3.36
193 194 7.845066 ATTAACTAAAGTTCGGAGACATTCC 57.155 36.000 0.00 0.00 39.73 3.01
195 196 4.822026 ACTAAAGTTCGGAGACATTCCTG 58.178 43.478 0.00 0.00 44.41 3.86
197 198 4.884668 AAAGTTCGGAGACATTCCTGTA 57.115 40.909 0.00 0.00 44.41 2.74
198 199 4.884668 AAGTTCGGAGACATTCCTGTAA 57.115 40.909 0.00 0.00 44.41 2.41
199 200 4.884668 AGTTCGGAGACATTCCTGTAAA 57.115 40.909 0.00 0.00 44.41 2.01
201 202 5.617252 AGTTCGGAGACATTCCTGTAAAAA 58.383 37.500 0.00 0.00 44.41 1.94
224 225 5.796350 AAAGACTACACACAACTCACAAC 57.204 39.130 0.00 0.00 0.00 3.32
225 226 3.444916 AGACTACACACAACTCACAACG 58.555 45.455 0.00 0.00 0.00 4.10
226 227 1.931172 ACTACACACAACTCACAACGC 59.069 47.619 0.00 0.00 0.00 4.84
227 228 1.930503 CTACACACAACTCACAACGCA 59.069 47.619 0.00 0.00 0.00 5.24
228 229 0.446222 ACACACAACTCACAACGCAC 59.554 50.000 0.00 0.00 0.00 5.34
229 230 0.248054 CACACAACTCACAACGCACC 60.248 55.000 0.00 0.00 0.00 5.01
230 231 1.355210 CACAACTCACAACGCACCC 59.645 57.895 0.00 0.00 0.00 4.61
232 233 3.276846 AACTCACAACGCACCCGC 61.277 61.111 0.00 0.00 38.22 6.13
233 234 4.539083 ACTCACAACGCACCCGCA 62.539 61.111 0.00 0.00 38.40 5.69
234 235 3.276091 CTCACAACGCACCCGCAA 61.276 61.111 0.00 0.00 38.40 4.85
235 236 3.521308 CTCACAACGCACCCGCAAC 62.521 63.158 0.00 0.00 38.40 4.17
237 238 3.134792 ACAACGCACCCGCAACAA 61.135 55.556 0.00 0.00 38.40 2.83
238 239 2.653766 CAACGCACCCGCAACAAC 60.654 61.111 0.00 0.00 38.40 3.32
239 240 2.826738 AACGCACCCGCAACAACT 60.827 55.556 0.00 0.00 38.40 3.16
240 241 3.119709 AACGCACCCGCAACAACTG 62.120 57.895 0.00 0.00 38.40 3.16
242 243 2.331451 GCACCCGCAACAACTGAC 59.669 61.111 0.00 0.00 38.36 3.51
243 244 2.477176 GCACCCGCAACAACTGACA 61.477 57.895 0.00 0.00 38.36 3.58
245 246 0.040157 CACCCGCAACAACTGACATG 60.040 55.000 0.00 0.00 0.00 3.21
246 247 0.465460 ACCCGCAACAACTGACATGT 60.465 50.000 0.00 0.00 0.00 3.21
247 248 0.040157 CCCGCAACAACTGACATGTG 60.040 55.000 1.15 0.00 0.00 3.21
248 249 0.040157 CCGCAACAACTGACATGTGG 60.040 55.000 1.15 0.00 37.14 4.17
249 250 0.943673 CGCAACAACTGACATGTGGA 59.056 50.000 1.15 0.00 0.00 4.02
250 251 1.334059 CGCAACAACTGACATGTGGAC 60.334 52.381 1.15 0.00 0.00 4.02
251 252 1.001378 GCAACAACTGACATGTGGACC 60.001 52.381 1.15 0.00 0.00 4.46
252 253 2.296792 CAACAACTGACATGTGGACCA 58.703 47.619 1.15 0.00 0.00 4.02
254 255 0.877071 CAACTGACATGTGGACCAGC 59.123 55.000 1.15 0.00 0.00 4.85
255 256 0.603707 AACTGACATGTGGACCAGCG 60.604 55.000 1.15 0.00 0.00 5.18
256 257 1.293179 CTGACATGTGGACCAGCGA 59.707 57.895 1.15 0.00 0.00 4.93
258 259 1.005037 GACATGTGGACCAGCGACA 60.005 57.895 1.15 0.00 39.62 4.35
260 261 2.048222 ATGTGGACCAGCGACACG 60.048 61.111 0.00 0.00 38.07 4.49
272 273 4.107051 GACACGCTGGCATGCCAC 62.107 66.667 35.59 27.60 41.89 5.01
286 287 2.994699 CCACCCGGGCACTTGATA 59.005 61.111 24.08 0.00 0.00 2.15
287 288 1.451387 CCACCCGGGCACTTGATAC 60.451 63.158 24.08 0.00 0.00 2.24
288 289 1.813753 CACCCGGGCACTTGATACG 60.814 63.158 24.08 0.00 0.00 3.06
289 290 1.985662 ACCCGGGCACTTGATACGA 60.986 57.895 24.08 0.00 0.00 3.43
290 291 1.520787 CCCGGGCACTTGATACGAC 60.521 63.158 8.08 0.00 0.00 4.34
292 293 1.876714 CGGGCACTTGATACGACGG 60.877 63.158 0.00 0.00 0.00 4.79
293 294 2.171725 GGGCACTTGATACGACGGC 61.172 63.158 0.00 0.00 0.00 5.68
294 295 1.447140 GGCACTTGATACGACGGCA 60.447 57.895 0.00 0.00 0.00 5.69
295 296 0.810031 GGCACTTGATACGACGGCAT 60.810 55.000 0.00 0.00 0.00 4.40
297 298 1.521423 GCACTTGATACGACGGCATAC 59.479 52.381 0.00 0.00 0.00 2.39
317 318 2.780595 CCCAGAGGCACCGTATTTG 58.219 57.895 0.00 0.00 0.00 2.32
318 319 0.251916 CCCAGAGGCACCGTATTTGA 59.748 55.000 0.00 0.00 0.00 2.69
319 320 1.339631 CCCAGAGGCACCGTATTTGAA 60.340 52.381 0.00 0.00 0.00 2.69
324 325 1.303091 GGCACCGTATTTGAACGCCT 61.303 55.000 0.00 0.00 41.51 5.52
325 326 1.361793 GCACCGTATTTGAACGCCTA 58.638 50.000 0.00 0.00 41.51 3.93
326 327 1.326548 GCACCGTATTTGAACGCCTAG 59.673 52.381 0.00 0.00 41.51 3.02
328 329 2.601763 CACCGTATTTGAACGCCTAGAC 59.398 50.000 0.00 0.00 41.51 2.59
330 331 3.255725 CCGTATTTGAACGCCTAGACAA 58.744 45.455 0.00 0.00 41.51 3.18
331 332 3.306166 CCGTATTTGAACGCCTAGACAAG 59.694 47.826 0.00 0.00 41.51 3.16
332 333 3.924686 CGTATTTGAACGCCTAGACAAGT 59.075 43.478 0.00 0.00 35.87 3.16
333 334 4.387862 CGTATTTGAACGCCTAGACAAGTT 59.612 41.667 0.00 0.00 35.87 2.66
335 336 5.857822 ATTTGAACGCCTAGACAAGTTAC 57.142 39.130 0.00 0.00 0.00 2.50
336 337 2.937591 TGAACGCCTAGACAAGTTACG 58.062 47.619 0.00 0.00 0.00 3.18
337 338 2.257034 GAACGCCTAGACAAGTTACGG 58.743 52.381 0.00 0.00 0.00 4.02
340 341 1.470979 CGCCTAGACAAGTTACGGCAT 60.471 52.381 0.00 0.00 37.39 4.40
341 342 2.202566 GCCTAGACAAGTTACGGCATC 58.797 52.381 0.00 0.00 37.48 3.91
342 343 2.418197 GCCTAGACAAGTTACGGCATCA 60.418 50.000 0.00 0.00 37.48 3.07
345 346 3.402628 AGACAAGTTACGGCATCACTT 57.597 42.857 0.00 0.00 0.00 3.16
347 348 4.134563 AGACAAGTTACGGCATCACTTTT 58.865 39.130 0.00 0.00 0.00 2.27
348 349 4.024048 AGACAAGTTACGGCATCACTTTTG 60.024 41.667 0.00 0.00 0.00 2.44
368 369 9.093970 ACTTTTGTGTATTTTTCAAGTTTAGGC 57.906 29.630 0.00 0.00 0.00 3.93
370 371 7.995463 TTGTGTATTTTTCAAGTTTAGGCAC 57.005 32.000 0.00 0.00 0.00 5.01
373 374 6.981559 GTGTATTTTTCAAGTTTAGGCACCAA 59.018 34.615 0.00 0.00 0.00 3.67
376 377 5.669164 TTTTCAAGTTTAGGCACCAAACT 57.331 34.783 9.87 9.87 45.73 2.66
377 378 4.647424 TTCAAGTTTAGGCACCAAACTG 57.353 40.909 14.07 10.26 43.62 3.16
380 381 2.583143 AGTTTAGGCACCAAACTGACC 58.417 47.619 13.13 0.00 42.98 4.02
381 382 1.265905 GTTTAGGCACCAAACTGACCG 59.734 52.381 7.20 0.00 33.91 4.79
382 383 0.470766 TTAGGCACCAAACTGACCGT 59.529 50.000 0.00 0.00 0.00 4.83
383 384 1.340088 TAGGCACCAAACTGACCGTA 58.660 50.000 0.00 0.00 0.00 4.02
384 385 0.250166 AGGCACCAAACTGACCGTAC 60.250 55.000 0.00 0.00 0.00 3.67
385 386 1.232621 GGCACCAAACTGACCGTACC 61.233 60.000 0.00 0.00 0.00 3.34
386 387 1.562575 GCACCAAACTGACCGTACCG 61.563 60.000 0.00 0.00 0.00 4.02
398 399 3.727419 CGTACCGGACAAGTTAGGG 57.273 57.895 9.46 0.00 0.00 3.53
401 402 1.208776 GTACCGGACAAGTTAGGGCAT 59.791 52.381 9.46 0.00 0.00 4.40
403 404 2.124411 ACCGGACAAGTTAGGGCATAT 58.876 47.619 9.46 0.00 0.00 1.78
404 405 2.158813 ACCGGACAAGTTAGGGCATATG 60.159 50.000 9.46 0.00 0.00 1.78
405 406 2.158813 CCGGACAAGTTAGGGCATATGT 60.159 50.000 0.00 0.00 0.00 2.29
406 407 2.872245 CGGACAAGTTAGGGCATATGTG 59.128 50.000 4.29 0.00 0.00 3.21
407 408 3.214328 GGACAAGTTAGGGCATATGTGG 58.786 50.000 4.29 0.00 0.00 4.17
408 409 3.371595 GGACAAGTTAGGGCATATGTGGT 60.372 47.826 4.29 0.00 0.00 4.16
409 410 3.620488 ACAAGTTAGGGCATATGTGGTG 58.380 45.455 4.29 0.00 0.00 4.17
410 411 3.010138 ACAAGTTAGGGCATATGTGGTGT 59.990 43.478 4.29 0.00 0.00 4.16
411 412 4.226394 ACAAGTTAGGGCATATGTGGTGTA 59.774 41.667 4.29 0.00 0.00 2.90
412 413 5.104109 ACAAGTTAGGGCATATGTGGTGTAT 60.104 40.000 4.29 0.00 0.00 2.29
413 414 5.646692 AGTTAGGGCATATGTGGTGTATT 57.353 39.130 4.29 0.00 0.00 1.89
414 415 6.013554 AGTTAGGGCATATGTGGTGTATTT 57.986 37.500 4.29 0.00 0.00 1.40
415 416 7.144234 AGTTAGGGCATATGTGGTGTATTTA 57.856 36.000 4.29 0.00 0.00 1.40
417 418 7.501225 AGTTAGGGCATATGTGGTGTATTTAAC 59.499 37.037 4.29 2.27 0.00 2.01
418 419 6.013554 AGGGCATATGTGGTGTATTTAACT 57.986 37.500 4.29 0.00 0.00 2.24
419 420 6.062095 AGGGCATATGTGGTGTATTTAACTC 58.938 40.000 4.29 0.00 0.00 3.01
456 457 9.836864 ATCATTAGATGCACTCTTAAACATGTA 57.163 29.630 0.00 0.00 35.28 2.29
512 513 6.032956 TGATACTTTCCTCGCTAAACTTGA 57.967 37.500 0.00 0.00 0.00 3.02
524 525 7.095187 CCTCGCTAAACTTGATCAAACTAAACT 60.095 37.037 9.88 0.00 0.00 2.66
623 625 2.998316 AGAAGGGCAGACAATCTAGC 57.002 50.000 0.00 0.00 0.00 3.42
660 665 4.373156 AATCAACAAACCTACAGCCTCT 57.627 40.909 0.00 0.00 0.00 3.69
674 679 7.182206 ACCTACAGCCTCTTTTCCTTAATCTTA 59.818 37.037 0.00 0.00 0.00 2.10
778 2440 8.825774 TGCATATATCTAAAATCTTGGGCTAGA 58.174 33.333 0.00 0.00 0.00 2.43
783 2445 4.783227 TCTAAAATCTTGGGCTAGACACCT 59.217 41.667 0.00 0.00 0.00 4.00
784 2446 3.356529 AAATCTTGGGCTAGACACCTG 57.643 47.619 0.00 0.00 0.00 4.00
786 2448 1.078143 CTTGGGCTAGACACCTGGC 60.078 63.158 0.00 0.00 44.99 4.85
787 2449 2.859273 CTTGGGCTAGACACCTGGCG 62.859 65.000 0.00 0.00 46.45 5.69
788 2450 3.391382 GGGCTAGACACCTGGCGT 61.391 66.667 0.00 0.00 46.45 5.68
789 2451 2.663196 GGCTAGACACCTGGCGTT 59.337 61.111 0.00 0.00 46.45 4.84
790 2452 1.003718 GGCTAGACACCTGGCGTTT 60.004 57.895 0.00 0.00 46.45 3.60
791 2453 1.298859 GGCTAGACACCTGGCGTTTG 61.299 60.000 0.00 0.00 46.45 2.93
792 2454 1.912371 GCTAGACACCTGGCGTTTGC 61.912 60.000 0.00 0.00 37.16 3.68
793 2455 0.320771 CTAGACACCTGGCGTTTGCT 60.321 55.000 0.00 0.00 42.25 3.91
794 2456 0.602638 TAGACACCTGGCGTTTGCTG 60.603 55.000 0.00 0.00 42.25 4.41
795 2457 2.906897 ACACCTGGCGTTTGCTGG 60.907 61.111 0.00 0.00 42.25 4.85
796 2458 4.347453 CACCTGGCGTTTGCTGGC 62.347 66.667 0.00 0.00 42.25 4.85
797 2459 4.892965 ACCTGGCGTTTGCTGGCA 62.893 61.111 0.00 0.00 42.25 4.92
798 2460 4.347453 CCTGGCGTTTGCTGGCAC 62.347 66.667 0.00 0.00 42.25 5.01
799 2461 3.289834 CTGGCGTTTGCTGGCACT 61.290 61.111 0.00 0.00 42.25 4.40
800 2462 3.259425 CTGGCGTTTGCTGGCACTC 62.259 63.158 0.00 0.00 42.25 3.51
801 2463 2.980233 GGCGTTTGCTGGCACTCT 60.980 61.111 0.00 0.00 42.25 3.24
802 2464 2.253452 GCGTTTGCTGGCACTCTG 59.747 61.111 0.00 0.00 38.39 3.35
803 2465 2.253452 CGTTTGCTGGCACTCTGC 59.747 61.111 0.00 0.00 44.08 4.26
825 2487 3.944871 CCGCAGGCATTGGTTAATC 57.055 52.632 0.00 0.00 46.14 1.75
826 2488 1.392589 CCGCAGGCATTGGTTAATCT 58.607 50.000 0.00 0.00 46.14 2.40
827 2489 2.571212 CCGCAGGCATTGGTTAATCTA 58.429 47.619 0.00 0.00 46.14 1.98
828 2490 2.948979 CCGCAGGCATTGGTTAATCTAA 59.051 45.455 0.00 0.00 46.14 2.10
829 2491 3.243068 CCGCAGGCATTGGTTAATCTAAC 60.243 47.826 0.00 0.00 46.14 2.34
830 2492 3.627577 CGCAGGCATTGGTTAATCTAACT 59.372 43.478 0.00 0.00 38.68 2.24
831 2493 4.260784 CGCAGGCATTGGTTAATCTAACTC 60.261 45.833 0.00 0.00 38.68 3.01
832 2494 4.884164 GCAGGCATTGGTTAATCTAACTCT 59.116 41.667 0.00 0.00 38.68 3.24
833 2495 6.055588 GCAGGCATTGGTTAATCTAACTCTA 58.944 40.000 0.00 0.00 38.68 2.43
834 2496 6.203723 GCAGGCATTGGTTAATCTAACTCTAG 59.796 42.308 0.00 0.00 38.68 2.43
835 2497 6.708054 CAGGCATTGGTTAATCTAACTCTAGG 59.292 42.308 0.00 0.00 38.68 3.02
836 2498 6.387220 AGGCATTGGTTAATCTAACTCTAGGT 59.613 38.462 0.00 0.00 38.68 3.08
837 2499 6.483640 GGCATTGGTTAATCTAACTCTAGGTG 59.516 42.308 0.00 0.00 38.68 4.00
838 2500 7.048512 GCATTGGTTAATCTAACTCTAGGTGT 58.951 38.462 0.00 0.00 38.68 4.16
839 2501 7.553044 GCATTGGTTAATCTAACTCTAGGTGTT 59.447 37.037 7.11 7.11 38.68 3.32
840 2502 8.883731 CATTGGTTAATCTAACTCTAGGTGTTG 58.116 37.037 10.78 3.84 38.68 3.33
841 2503 7.549147 TGGTTAATCTAACTCTAGGTGTTGT 57.451 36.000 10.78 0.00 38.68 3.32
842 2504 7.970102 TGGTTAATCTAACTCTAGGTGTTGTT 58.030 34.615 10.78 0.00 38.68 2.83
843 2505 8.434392 TGGTTAATCTAACTCTAGGTGTTGTTT 58.566 33.333 10.78 5.90 38.68 2.83
844 2506 8.933807 GGTTAATCTAACTCTAGGTGTTGTTTC 58.066 37.037 10.78 3.64 38.68 2.78
845 2507 9.708092 GTTAATCTAACTCTAGGTGTTGTTTCT 57.292 33.333 10.78 0.00 35.81 2.52
848 2510 9.628500 AATCTAACTCTAGGTGTTGTTTCTTTT 57.372 29.630 10.78 0.00 0.00 2.27
849 2511 9.628500 ATCTAACTCTAGGTGTTGTTTCTTTTT 57.372 29.630 10.78 0.00 0.00 1.94
850 2512 8.889717 TCTAACTCTAGGTGTTGTTTCTTTTTG 58.110 33.333 10.78 0.00 0.00 2.44
851 2513 7.462571 AACTCTAGGTGTTGTTTCTTTTTGT 57.537 32.000 0.00 0.00 0.00 2.83
852 2514 6.852664 ACTCTAGGTGTTGTTTCTTTTTGTG 58.147 36.000 0.00 0.00 0.00 3.33
853 2515 6.127730 ACTCTAGGTGTTGTTTCTTTTTGTGG 60.128 38.462 0.00 0.00 0.00 4.17
854 2516 4.882842 AGGTGTTGTTTCTTTTTGTGGT 57.117 36.364 0.00 0.00 0.00 4.16
855 2517 5.222079 AGGTGTTGTTTCTTTTTGTGGTT 57.778 34.783 0.00 0.00 0.00 3.67
856 2518 5.616270 AGGTGTTGTTTCTTTTTGTGGTTT 58.384 33.333 0.00 0.00 0.00 3.27
857 2519 5.699001 AGGTGTTGTTTCTTTTTGTGGTTTC 59.301 36.000 0.00 0.00 0.00 2.78
858 2520 5.699001 GGTGTTGTTTCTTTTTGTGGTTTCT 59.301 36.000 0.00 0.00 0.00 2.52
859 2521 6.347321 GGTGTTGTTTCTTTTTGTGGTTTCTG 60.347 38.462 0.00 0.00 0.00 3.02
860 2522 5.178438 TGTTGTTTCTTTTTGTGGTTTCTGC 59.822 36.000 0.00 0.00 0.00 4.26
861 2523 3.923461 TGTTTCTTTTTGTGGTTTCTGCG 59.077 39.130 0.00 0.00 0.00 5.18
862 2524 4.170256 GTTTCTTTTTGTGGTTTCTGCGA 58.830 39.130 0.00 0.00 0.00 5.10
863 2525 3.414549 TCTTTTTGTGGTTTCTGCGAC 57.585 42.857 0.00 0.00 0.00 5.19
864 2526 2.108700 CTTTTTGTGGTTTCTGCGACG 58.891 47.619 0.00 0.00 0.00 5.12
865 2527 1.088306 TTTTGTGGTTTCTGCGACGT 58.912 45.000 0.00 0.00 0.00 4.34
866 2528 1.088306 TTTGTGGTTTCTGCGACGTT 58.912 45.000 0.00 0.00 0.00 3.99
867 2529 0.653636 TTGTGGTTTCTGCGACGTTC 59.346 50.000 0.00 0.00 0.00 3.95
868 2530 0.179094 TGTGGTTTCTGCGACGTTCT 60.179 50.000 0.00 0.00 0.00 3.01
869 2531 0.507358 GTGGTTTCTGCGACGTTCTC 59.493 55.000 0.00 0.00 0.00 2.87
870 2532 0.387929 TGGTTTCTGCGACGTTCTCT 59.612 50.000 0.00 0.00 0.00 3.10
871 2533 1.202486 TGGTTTCTGCGACGTTCTCTT 60.202 47.619 0.00 0.00 0.00 2.85
872 2534 1.865340 GGTTTCTGCGACGTTCTCTTT 59.135 47.619 0.00 0.00 0.00 2.52
873 2535 3.054878 GGTTTCTGCGACGTTCTCTTTA 58.945 45.455 0.00 0.00 0.00 1.85
874 2536 3.492011 GGTTTCTGCGACGTTCTCTTTAA 59.508 43.478 0.00 0.00 0.00 1.52
875 2537 4.025480 GGTTTCTGCGACGTTCTCTTTAAA 60.025 41.667 0.00 0.00 0.00 1.52
876 2538 4.703899 TTCTGCGACGTTCTCTTTAAAC 57.296 40.909 0.00 0.00 0.00 2.01
884 2546 3.294102 CGTTCTCTTTAAACGTTTGCCC 58.706 45.455 23.46 2.23 43.31 5.36
885 2547 3.635331 GTTCTCTTTAAACGTTTGCCCC 58.365 45.455 23.46 0.00 0.00 5.80
886 2548 3.217681 TCTCTTTAAACGTTTGCCCCT 57.782 42.857 23.46 0.00 0.00 4.79
887 2549 3.143728 TCTCTTTAAACGTTTGCCCCTC 58.856 45.455 23.46 0.00 0.00 4.30
888 2550 3.146847 CTCTTTAAACGTTTGCCCCTCT 58.853 45.455 23.46 0.00 0.00 3.69
889 2551 2.882137 TCTTTAAACGTTTGCCCCTCTG 59.118 45.455 23.46 5.29 0.00 3.35
890 2552 2.351706 TTAAACGTTTGCCCCTCTGT 57.648 45.000 23.46 0.00 0.00 3.41
891 2553 3.488778 TTAAACGTTTGCCCCTCTGTA 57.511 42.857 23.46 0.00 0.00 2.74
892 2554 2.351706 AAACGTTTGCCCCTCTGTAA 57.648 45.000 13.81 0.00 0.00 2.41
893 2555 2.351706 AACGTTTGCCCCTCTGTAAA 57.648 45.000 0.00 0.00 0.00 2.01
894 2556 2.579410 ACGTTTGCCCCTCTGTAAAT 57.421 45.000 0.00 0.00 0.00 1.40
895 2557 2.871453 ACGTTTGCCCCTCTGTAAATT 58.129 42.857 0.00 0.00 0.00 1.82
896 2558 2.556622 ACGTTTGCCCCTCTGTAAATTG 59.443 45.455 0.00 0.00 0.00 2.32
897 2559 2.671070 CGTTTGCCCCTCTGTAAATTGC 60.671 50.000 0.00 0.00 0.00 3.56
898 2560 1.173043 TTGCCCCTCTGTAAATTGCG 58.827 50.000 0.00 0.00 0.00 4.85
899 2561 0.037590 TGCCCCTCTGTAAATTGCGT 59.962 50.000 0.00 0.00 0.00 5.24
900 2562 1.173913 GCCCCTCTGTAAATTGCGTT 58.826 50.000 0.00 0.00 0.00 4.84
901 2563 1.132453 GCCCCTCTGTAAATTGCGTTC 59.868 52.381 0.00 0.00 0.00 3.95
902 2564 2.711542 CCCCTCTGTAAATTGCGTTCT 58.288 47.619 0.00 0.00 0.00 3.01
903 2565 3.081804 CCCCTCTGTAAATTGCGTTCTT 58.918 45.455 0.00 0.00 0.00 2.52
904 2566 3.506067 CCCCTCTGTAAATTGCGTTCTTT 59.494 43.478 0.00 0.00 0.00 2.52
905 2567 4.379499 CCCCTCTGTAAATTGCGTTCTTTC 60.379 45.833 0.00 0.00 0.00 2.62
906 2568 4.215399 CCCTCTGTAAATTGCGTTCTTTCA 59.785 41.667 0.00 0.00 0.00 2.69
907 2569 5.147162 CCTCTGTAAATTGCGTTCTTTCAC 58.853 41.667 0.00 0.00 0.00 3.18
908 2570 5.103290 TCTGTAAATTGCGTTCTTTCACC 57.897 39.130 0.00 0.00 0.00 4.02
909 2571 4.576873 TCTGTAAATTGCGTTCTTTCACCA 59.423 37.500 0.00 0.00 0.00 4.17
910 2572 5.240623 TCTGTAAATTGCGTTCTTTCACCAT 59.759 36.000 0.00 0.00 0.00 3.55
911 2573 5.457140 TGTAAATTGCGTTCTTTCACCATC 58.543 37.500 0.00 0.00 0.00 3.51
912 2574 4.853924 AAATTGCGTTCTTTCACCATCT 57.146 36.364 0.00 0.00 0.00 2.90
913 2575 4.425577 AATTGCGTTCTTTCACCATCTC 57.574 40.909 0.00 0.00 0.00 2.75
914 2576 2.839486 TGCGTTCTTTCACCATCTCT 57.161 45.000 0.00 0.00 0.00 3.10
915 2577 3.126001 TGCGTTCTTTCACCATCTCTT 57.874 42.857 0.00 0.00 0.00 2.85
916 2578 3.067106 TGCGTTCTTTCACCATCTCTTC 58.933 45.455 0.00 0.00 0.00 2.87
917 2579 3.244215 TGCGTTCTTTCACCATCTCTTCT 60.244 43.478 0.00 0.00 0.00 2.85
918 2580 4.021456 TGCGTTCTTTCACCATCTCTTCTA 60.021 41.667 0.00 0.00 0.00 2.10
919 2581 5.112686 GCGTTCTTTCACCATCTCTTCTAT 58.887 41.667 0.00 0.00 0.00 1.98
920 2582 6.127451 TGCGTTCTTTCACCATCTCTTCTATA 60.127 38.462 0.00 0.00 0.00 1.31
921 2583 6.757010 GCGTTCTTTCACCATCTCTTCTATAA 59.243 38.462 0.00 0.00 0.00 0.98
922 2584 7.043059 GCGTTCTTTCACCATCTCTTCTATAAG 60.043 40.741 0.00 0.00 0.00 1.73
923 2585 8.191446 CGTTCTTTCACCATCTCTTCTATAAGA 58.809 37.037 0.00 0.00 39.47 2.10
924 2586 9.877178 GTTCTTTCACCATCTCTTCTATAAGAA 57.123 33.333 0.00 0.00 41.19 2.52
928 2590 9.672673 TTTCACCATCTCTTCTATAAGAAAAGG 57.327 33.333 0.00 0.00 41.19 3.11
929 2591 7.275920 TCACCATCTCTTCTATAAGAAAAGGC 58.724 38.462 0.00 0.00 41.19 4.35
930 2592 7.050377 CACCATCTCTTCTATAAGAAAAGGCA 58.950 38.462 0.00 0.00 41.19 4.75
931 2593 7.226325 CACCATCTCTTCTATAAGAAAAGGCAG 59.774 40.741 0.00 0.00 41.19 4.85
932 2594 7.092668 ACCATCTCTTCTATAAGAAAAGGCAGT 60.093 37.037 0.00 0.00 41.19 4.40
933 2595 7.226325 CCATCTCTTCTATAAGAAAAGGCAGTG 59.774 40.741 0.00 0.00 41.19 3.66
934 2596 6.109359 TCTCTTCTATAAGAAAAGGCAGTGC 58.891 40.000 6.55 6.55 41.19 4.40
935 2597 6.054860 TCTTCTATAAGAAAAGGCAGTGCT 57.945 37.500 16.11 0.00 38.81 4.40
936 2598 6.476378 TCTTCTATAAGAAAAGGCAGTGCTT 58.524 36.000 16.11 3.91 38.81 3.91
937 2599 6.595716 TCTTCTATAAGAAAAGGCAGTGCTTC 59.404 38.462 16.11 11.13 38.81 3.86
938 2600 6.054860 TCTATAAGAAAAGGCAGTGCTTCT 57.945 37.500 16.11 13.32 0.00 2.85
939 2601 5.877012 TCTATAAGAAAAGGCAGTGCTTCTG 59.123 40.000 16.11 4.94 46.12 3.02
946 2608 3.749981 CAGTGCTTCTGCCGGTTT 58.250 55.556 1.90 0.00 37.36 3.27
947 2609 1.576421 CAGTGCTTCTGCCGGTTTC 59.424 57.895 1.90 0.00 37.36 2.78
948 2610 0.886490 CAGTGCTTCTGCCGGTTTCT 60.886 55.000 1.90 0.00 37.36 2.52
949 2611 0.685097 AGTGCTTCTGCCGGTTTCTA 59.315 50.000 1.90 0.00 38.71 2.10
950 2612 1.071699 AGTGCTTCTGCCGGTTTCTAA 59.928 47.619 1.90 0.00 38.71 2.10
951 2613 1.877443 GTGCTTCTGCCGGTTTCTAAA 59.123 47.619 1.90 0.00 38.71 1.85
952 2614 2.292292 GTGCTTCTGCCGGTTTCTAAAA 59.708 45.455 1.90 0.00 38.71 1.52
953 2615 2.952978 TGCTTCTGCCGGTTTCTAAAAA 59.047 40.909 1.90 0.00 38.71 1.94
976 2638 3.439857 AAAAATCTAGGGTCAGCAGCA 57.560 42.857 0.00 0.00 0.00 4.41
1047 2880 1.622607 CCGATTGGTCTGGCCTACCA 61.623 60.000 22.29 22.29 45.26 3.25
1065 2919 4.802051 ATGGCGGCGCTGGATGTT 62.802 61.111 32.30 5.89 0.00 2.71
1655 3542 8.830580 CATCAAGGATGTTCTTTATAACGACAT 58.169 33.333 7.07 7.07 35.54 3.06
1742 3629 0.736325 CCGTCGGTGACCAAGATCAC 60.736 60.000 2.08 0.00 46.95 3.06
1784 3671 2.031683 GTGTTGCCAATATGTACCTCGC 59.968 50.000 0.00 0.00 0.00 5.03
2184 4077 1.002251 GACGATGTCGACTCTCCATCC 60.002 57.143 17.92 0.00 43.02 3.51
2217 4110 3.958147 TGTTGCGGAGAGATCTTGGTATA 59.042 43.478 0.00 0.00 0.00 1.47
2358 4251 3.830192 CCGCCAATTGCAGGGAGC 61.830 66.667 0.00 0.00 45.96 4.70
2452 4348 2.265739 GGCGTGGACTCATGAGCA 59.734 61.111 22.83 10.67 31.73 4.26
2487 4384 1.281899 GTGTCGACAGCCTAAGATGC 58.718 55.000 20.73 0.00 30.46 3.91
2510 4407 1.296722 CGATCGGACGTCAGACGAC 60.297 63.158 29.53 22.44 46.05 4.34
2520 4417 4.778415 CAGACGACGACTGCGGGG 62.778 72.222 14.00 0.00 43.17 5.73
2550 4447 5.187186 TGGGGCGGCTGTTTTTAATTAATTA 59.813 36.000 9.56 3.71 0.00 1.40
2571 4468 2.734276 TTTATTTTTGGGCTGGCGTC 57.266 45.000 0.00 0.00 0.00 5.19
2592 4489 2.308690 GGGACGATAGGTAGAACAGCT 58.691 52.381 0.00 0.00 43.77 4.24
2650 4566 1.088306 ACGCGTTTTGTCAAAGGTCA 58.912 45.000 5.58 0.00 31.53 4.02
2653 4569 2.467305 CGCGTTTTGTCAAAGGTCAATG 59.533 45.455 0.00 0.00 31.53 2.82
2663 4579 5.659079 TGTCAAAGGTCAATGTTACCCTTTT 59.341 36.000 0.00 0.00 43.06 2.27
2680 4596 3.392947 CCTTTTTGTGGGTTTTGGGGTAT 59.607 43.478 0.00 0.00 0.00 2.73
2723 4641 3.317993 ACACCCAGACTATTGTGCAAAAC 59.682 43.478 0.00 0.00 31.98 2.43
2765 4683 5.335269 CCAGTTGCAACCATTTCATACGTAA 60.335 40.000 25.62 0.00 0.00 3.18
2769 4707 7.870445 AGTTGCAACCATTTCATACGTAAAATT 59.130 29.630 25.62 0.00 0.00 1.82
2770 4708 8.491950 GTTGCAACCATTTCATACGTAAAATTT 58.508 29.630 19.15 0.00 0.00 1.82
2772 4710 8.491152 TGCAACCATTTCATACGTAAAATTTTG 58.509 29.630 13.76 8.82 0.00 2.44
2773 4711 7.477112 GCAACCATTTCATACGTAAAATTTTGC 59.523 33.333 20.24 20.24 35.86 3.68
2774 4712 8.491152 CAACCATTTCATACGTAAAATTTTGCA 58.509 29.630 17.50 1.24 0.00 4.08
2775 4713 8.770438 ACCATTTCATACGTAAAATTTTGCAT 57.230 26.923 17.50 6.34 0.00 3.96
2776 4714 8.868916 ACCATTTCATACGTAAAATTTTGCATC 58.131 29.630 17.50 4.18 0.00 3.91
2777 4715 8.049592 CCATTTCATACGTAAAATTTTGCATCG 58.950 33.333 17.50 15.27 0.00 3.84
2778 4716 8.793472 CATTTCATACGTAAAATTTTGCATCGA 58.207 29.630 17.50 6.58 0.00 3.59
2779 4717 8.903570 TTTCATACGTAAAATTTTGCATCGAT 57.096 26.923 17.50 0.00 0.00 3.59
2780 4718 7.890879 TCATACGTAAAATTTTGCATCGATG 57.109 32.000 21.27 21.27 0.00 3.84
2781 4719 7.468441 TCATACGTAAAATTTTGCATCGATGT 58.532 30.769 25.47 6.69 0.00 3.06
2782 4720 7.638295 TCATACGTAAAATTTTGCATCGATGTC 59.362 33.333 25.47 17.83 0.00 3.06
2783 4721 5.694816 ACGTAAAATTTTGCATCGATGTCA 58.305 33.333 25.47 20.02 0.00 3.58
2784 4722 5.567534 ACGTAAAATTTTGCATCGATGTCAC 59.432 36.000 25.47 10.58 0.00 3.67
2785 4723 5.794945 CGTAAAATTTTGCATCGATGTCACT 59.205 36.000 25.47 9.28 0.00 3.41
2786 4724 6.305399 CGTAAAATTTTGCATCGATGTCACTT 59.695 34.615 25.47 13.64 0.00 3.16
2787 4725 7.148983 CGTAAAATTTTGCATCGATGTCACTTT 60.149 33.333 25.47 17.96 0.00 2.66
2788 4726 7.481275 AAAATTTTGCATCGATGTCACTTTT 57.519 28.000 25.47 20.76 0.00 2.27
2789 4727 7.481275 AAATTTTGCATCGATGTCACTTTTT 57.519 28.000 25.47 17.02 0.00 1.94
2790 4728 6.695292 ATTTTGCATCGATGTCACTTTTTC 57.305 33.333 25.47 7.05 0.00 2.29
2791 4729 5.437289 TTTGCATCGATGTCACTTTTTCT 57.563 34.783 25.47 0.00 0.00 2.52
2792 4730 5.437289 TTGCATCGATGTCACTTTTTCTT 57.563 34.783 25.47 0.00 0.00 2.52
2793 4731 5.437289 TGCATCGATGTCACTTTTTCTTT 57.563 34.783 25.47 0.00 0.00 2.52
2794 4732 5.214417 TGCATCGATGTCACTTTTTCTTTG 58.786 37.500 25.47 0.00 0.00 2.77
2795 4733 5.215160 GCATCGATGTCACTTTTTCTTTGT 58.785 37.500 25.47 0.00 0.00 2.83
2836 4774 1.681538 ATGCCCGTGTGTTGTAACAA 58.318 45.000 0.00 0.00 41.21 2.83
2978 4922 8.915654 GTCAAAACAATGATTGAGAAATACACC 58.084 33.333 12.80 0.00 36.31 4.16
3043 10060 2.274542 TGGGGCAATCCTAAAGACTCA 58.725 47.619 0.00 0.00 35.33 3.41
3153 10173 2.693074 ACCTTCACGTTGCAAGGAATTT 59.307 40.909 24.88 0.00 41.74 1.82
3243 10263 5.997746 TCAATGTGTAAGCTCTTTAACTGCT 59.002 36.000 0.00 0.00 38.87 4.24
3289 10310 8.314021 AGGCTGTAAGATTTATTTTCCTTTTGG 58.686 33.333 0.00 0.00 37.15 3.28
3364 10385 4.212143 TGAGCATCTGCAAGTATTGACT 57.788 40.909 4.79 0.00 42.99 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.113986 GCACCAAGAGGCCACACT 59.886 61.111 5.01 0.00 39.06 3.55
1 2 3.357079 CGCACCAAGAGGCCACAC 61.357 66.667 5.01 0.00 39.06 3.82
6 7 2.555547 AAACAGCGCACCAAGAGGC 61.556 57.895 11.47 0.00 39.06 4.70
7 8 1.165907 TCAAACAGCGCACCAAGAGG 61.166 55.000 11.47 0.00 42.21 3.69
8 9 0.877071 ATCAAACAGCGCACCAAGAG 59.123 50.000 11.47 0.00 0.00 2.85
9 10 2.076100 CTATCAAACAGCGCACCAAGA 58.924 47.619 11.47 1.66 0.00 3.02
10 11 1.131126 CCTATCAAACAGCGCACCAAG 59.869 52.381 11.47 0.00 0.00 3.61
11 12 1.164411 CCTATCAAACAGCGCACCAA 58.836 50.000 11.47 0.00 0.00 3.67
12 13 1.305219 GCCTATCAAACAGCGCACCA 61.305 55.000 11.47 0.00 0.00 4.17
13 14 1.305219 TGCCTATCAAACAGCGCACC 61.305 55.000 11.47 0.00 0.00 5.01
14 15 0.521291 TTGCCTATCAAACAGCGCAC 59.479 50.000 11.47 0.00 0.00 5.34
15 16 0.521291 GTTGCCTATCAAACAGCGCA 59.479 50.000 11.47 0.00 36.26 6.09
16 17 0.179163 GGTTGCCTATCAAACAGCGC 60.179 55.000 0.00 0.00 41.96 5.92
17 18 1.164411 TGGTTGCCTATCAAACAGCG 58.836 50.000 0.00 0.00 46.70 5.18
22 23 1.075374 ACCTGCTGGTTGCCTATCAAA 59.925 47.619 9.88 0.00 46.05 2.69
23 24 0.698238 ACCTGCTGGTTGCCTATCAA 59.302 50.000 9.88 0.00 46.05 2.57
34 35 2.113139 AAACCACGGACCTGCTGG 59.887 61.111 8.29 8.29 39.83 4.85
36 37 0.110486 ATTCAAACCACGGACCTGCT 59.890 50.000 0.00 0.00 0.00 4.24
37 38 0.958822 AATTCAAACCACGGACCTGC 59.041 50.000 0.00 0.00 0.00 4.85
38 39 1.539827 GGAATTCAAACCACGGACCTG 59.460 52.381 7.93 0.00 0.00 4.00
40 41 0.885879 GGGAATTCAAACCACGGACC 59.114 55.000 7.93 0.00 0.00 4.46
41 42 1.905637 AGGGAATTCAAACCACGGAC 58.094 50.000 7.93 0.00 0.00 4.79
42 43 2.158593 TGAAGGGAATTCAAACCACGGA 60.159 45.455 7.93 0.00 45.00 4.69
52 53 1.534729 AGTTGGCGTGAAGGGAATTC 58.465 50.000 0.00 0.00 38.50 2.17
53 54 1.613437 CAAGTTGGCGTGAAGGGAATT 59.387 47.619 0.00 0.00 0.00 2.17
54 55 1.247567 CAAGTTGGCGTGAAGGGAAT 58.752 50.000 0.00 0.00 0.00 3.01
55 56 0.106918 ACAAGTTGGCGTGAAGGGAA 60.107 50.000 7.96 0.00 0.00 3.97
56 57 0.817634 CACAAGTTGGCGTGAAGGGA 60.818 55.000 7.96 0.00 35.02 4.20
57 58 1.101049 ACACAAGTTGGCGTGAAGGG 61.101 55.000 7.96 0.00 36.91 3.95
58 59 0.738389 AACACAAGTTGGCGTGAAGG 59.262 50.000 7.96 0.00 36.39 3.46
59 60 2.559998 AAACACAAGTTGGCGTGAAG 57.440 45.000 7.96 0.00 38.17 3.02
60 61 5.950758 ATATAAACACAAGTTGGCGTGAA 57.049 34.783 7.96 0.00 38.17 3.18
61 62 5.950758 AATATAAACACAAGTTGGCGTGA 57.049 34.783 7.96 0.00 38.17 4.35
62 63 7.043059 ACAAAAATATAAACACAAGTTGGCGTG 60.043 33.333 7.96 0.00 38.17 5.34
64 65 7.168302 TCACAAAAATATAAACACAAGTTGGCG 59.832 33.333 7.96 0.21 38.17 5.69
65 66 8.359060 TCACAAAAATATAAACACAAGTTGGC 57.641 30.769 7.96 0.00 38.17 4.52
66 67 9.743057 TCTCACAAAAATATAAACACAAGTTGG 57.257 29.630 7.96 0.00 38.17 3.77
87 88 8.773136 CGCGTTTGTACTTTAATTAATTCTCAC 58.227 33.333 3.39 0.00 0.00 3.51
90 91 9.321590 GAACGCGTTTGTACTTTAATTAATTCT 57.678 29.630 27.32 0.00 0.00 2.40
92 93 8.291740 AGGAACGCGTTTGTACTTTAATTAATT 58.708 29.630 27.32 5.89 0.00 1.40
94 95 7.070798 CAGGAACGCGTTTGTACTTTAATTAA 58.929 34.615 27.32 0.00 0.00 1.40
95 96 6.202570 ACAGGAACGCGTTTGTACTTTAATTA 59.797 34.615 27.32 0.00 0.00 1.40
98 99 3.870419 ACAGGAACGCGTTTGTACTTTAA 59.130 39.130 27.32 0.00 0.00 1.52
99 100 3.456280 ACAGGAACGCGTTTGTACTTTA 58.544 40.909 27.32 0.00 0.00 1.85
100 101 2.282407 ACAGGAACGCGTTTGTACTTT 58.718 42.857 27.32 12.08 0.00 2.66
101 102 1.944032 ACAGGAACGCGTTTGTACTT 58.056 45.000 27.32 6.57 0.00 2.24
102 103 2.294233 TCTACAGGAACGCGTTTGTACT 59.706 45.455 27.32 18.13 0.00 2.73
103 104 2.664916 TCTACAGGAACGCGTTTGTAC 58.335 47.619 27.32 16.20 0.00 2.90
104 105 3.367992 TTCTACAGGAACGCGTTTGTA 57.632 42.857 27.32 26.71 0.00 2.41
105 106 2.228138 TTCTACAGGAACGCGTTTGT 57.772 45.000 26.84 26.84 0.00 2.83
125 126 4.549458 GACACTGCATGCACACTATTTTT 58.451 39.130 18.46 0.00 0.00 1.94
126 127 3.057315 GGACACTGCATGCACACTATTTT 60.057 43.478 18.46 0.00 0.00 1.82
127 128 2.489329 GGACACTGCATGCACACTATTT 59.511 45.455 18.46 0.00 0.00 1.40
128 129 2.086869 GGACACTGCATGCACACTATT 58.913 47.619 18.46 0.00 0.00 1.73
129 130 1.742761 GGACACTGCATGCACACTAT 58.257 50.000 18.46 0.05 0.00 2.12
130 131 0.670239 CGGACACTGCATGCACACTA 60.670 55.000 18.46 0.00 0.00 2.74
131 132 1.962822 CGGACACTGCATGCACACT 60.963 57.895 18.46 0.44 0.00 3.55
134 135 0.165944 GTTACGGACACTGCATGCAC 59.834 55.000 18.46 6.91 0.00 4.57
135 136 0.250081 TGTTACGGACACTGCATGCA 60.250 50.000 21.29 21.29 32.00 3.96
136 137 1.086696 ATGTTACGGACACTGCATGC 58.913 50.000 11.82 11.82 42.04 4.06
137 138 3.829886 AAATGTTACGGACACTGCATG 57.170 42.857 0.00 0.00 42.04 4.06
160 161 8.680039 TCCGAACTTTAGTTAATTCTTGGAAA 57.320 30.769 0.00 0.00 38.56 3.13
161 162 8.152246 TCTCCGAACTTTAGTTAATTCTTGGAA 58.848 33.333 0.00 0.00 38.56 3.53
163 164 7.386848 TGTCTCCGAACTTTAGTTAATTCTTGG 59.613 37.037 0.00 0.00 38.56 3.61
164 165 8.306680 TGTCTCCGAACTTTAGTTAATTCTTG 57.693 34.615 0.00 0.00 38.56 3.02
165 166 9.503399 AATGTCTCCGAACTTTAGTTAATTCTT 57.497 29.630 0.00 0.00 38.56 2.52
167 168 8.388853 GGAATGTCTCCGAACTTTAGTTAATTC 58.611 37.037 0.00 0.00 34.55 2.17
168 169 8.265165 GGAATGTCTCCGAACTTTAGTTAATT 57.735 34.615 0.00 0.00 34.55 1.40
169 170 7.845066 GGAATGTCTCCGAACTTTAGTTAAT 57.155 36.000 0.00 0.00 34.55 1.40
201 202 5.163893 CGTTGTGAGTTGTGTGTAGTCTTTT 60.164 40.000 0.00 0.00 0.00 2.27
203 204 3.863424 CGTTGTGAGTTGTGTGTAGTCTT 59.137 43.478 0.00 0.00 0.00 3.01
205 206 2.034001 GCGTTGTGAGTTGTGTGTAGTC 60.034 50.000 0.00 0.00 0.00 2.59
207 208 1.930503 TGCGTTGTGAGTTGTGTGTAG 59.069 47.619 0.00 0.00 0.00 2.74
208 209 1.661617 GTGCGTTGTGAGTTGTGTGTA 59.338 47.619 0.00 0.00 0.00 2.90
210 211 0.248054 GGTGCGTTGTGAGTTGTGTG 60.248 55.000 0.00 0.00 0.00 3.82
211 212 1.373590 GGGTGCGTTGTGAGTTGTGT 61.374 55.000 0.00 0.00 0.00 3.72
212 213 1.355210 GGGTGCGTTGTGAGTTGTG 59.645 57.895 0.00 0.00 0.00 3.33
213 214 2.177580 CGGGTGCGTTGTGAGTTGT 61.178 57.895 0.00 0.00 0.00 3.32
215 216 3.276846 GCGGGTGCGTTGTGAGTT 61.277 61.111 0.00 0.00 0.00 3.01
225 226 1.795170 ATGTCAGTTGTTGCGGGTGC 61.795 55.000 0.00 0.00 43.20 5.01
226 227 0.040157 CATGTCAGTTGTTGCGGGTG 60.040 55.000 0.00 0.00 0.00 4.61
227 228 0.465460 ACATGTCAGTTGTTGCGGGT 60.465 50.000 0.00 0.00 0.00 5.28
228 229 0.040157 CACATGTCAGTTGTTGCGGG 60.040 55.000 0.00 0.00 0.00 6.13
229 230 0.040157 CCACATGTCAGTTGTTGCGG 60.040 55.000 0.00 0.00 0.00 5.69
230 231 0.943673 TCCACATGTCAGTTGTTGCG 59.056 50.000 0.00 0.00 0.00 4.85
232 233 2.291465 CTGGTCCACATGTCAGTTGTTG 59.709 50.000 0.00 0.00 0.00 3.33
233 234 2.575532 CTGGTCCACATGTCAGTTGTT 58.424 47.619 0.00 0.00 0.00 2.83
234 235 1.815408 GCTGGTCCACATGTCAGTTGT 60.815 52.381 12.37 0.00 0.00 3.32
235 236 0.877071 GCTGGTCCACATGTCAGTTG 59.123 55.000 12.37 0.00 0.00 3.16
237 238 1.004560 CGCTGGTCCACATGTCAGT 60.005 57.895 12.37 0.00 0.00 3.41
238 239 1.016130 GTCGCTGGTCCACATGTCAG 61.016 60.000 7.70 7.70 0.00 3.51
239 240 1.005037 GTCGCTGGTCCACATGTCA 60.005 57.895 0.00 0.00 0.00 3.58
240 241 1.005037 TGTCGCTGGTCCACATGTC 60.005 57.895 0.00 0.00 0.00 3.06
242 243 2.382746 CGTGTCGCTGGTCCACATG 61.383 63.158 0.00 0.00 0.00 3.21
243 244 2.048222 CGTGTCGCTGGTCCACAT 60.048 61.111 0.00 0.00 0.00 3.21
271 272 1.985662 TCGTATCAAGTGCCCGGGT 60.986 57.895 24.63 1.77 0.00 5.28
272 273 1.520787 GTCGTATCAAGTGCCCGGG 60.521 63.158 19.09 19.09 0.00 5.73
273 274 1.876714 CGTCGTATCAAGTGCCCGG 60.877 63.158 0.00 0.00 0.00 5.73
274 275 1.876714 CCGTCGTATCAAGTGCCCG 60.877 63.158 0.00 0.00 0.00 6.13
275 276 2.171725 GCCGTCGTATCAAGTGCCC 61.172 63.158 0.00 0.00 0.00 5.36
276 277 0.810031 ATGCCGTCGTATCAAGTGCC 60.810 55.000 0.00 0.00 0.00 5.01
277 278 1.521423 GTATGCCGTCGTATCAAGTGC 59.479 52.381 0.00 0.00 0.00 4.40
279 280 1.862815 GCGTATGCCGTCGTATCAAGT 60.863 52.381 0.00 0.00 39.32 3.16
280 281 0.776451 GCGTATGCCGTCGTATCAAG 59.224 55.000 0.00 0.00 39.32 3.02
281 282 2.876052 GCGTATGCCGTCGTATCAA 58.124 52.632 0.00 0.00 39.32 2.57
300 301 1.737793 GTTCAAATACGGTGCCTCTGG 59.262 52.381 0.00 0.00 0.00 3.86
301 302 1.393539 CGTTCAAATACGGTGCCTCTG 59.606 52.381 0.00 0.00 37.86 3.35
302 303 1.722011 CGTTCAAATACGGTGCCTCT 58.278 50.000 0.00 0.00 37.86 3.69
304 305 1.303091 GGCGTTCAAATACGGTGCCT 61.303 55.000 0.00 0.00 41.65 4.75
305 306 1.135939 GGCGTTCAAATACGGTGCC 59.864 57.895 0.00 0.00 41.65 5.01
306 307 1.326548 CTAGGCGTTCAAATACGGTGC 59.673 52.381 0.00 0.00 41.65 5.01
307 308 2.601763 GTCTAGGCGTTCAAATACGGTG 59.398 50.000 0.00 0.00 41.65 4.94
308 309 2.231964 TGTCTAGGCGTTCAAATACGGT 59.768 45.455 0.00 0.00 41.65 4.83
310 311 3.924686 ACTTGTCTAGGCGTTCAAATACG 59.075 43.478 0.00 0.00 44.09 3.06
311 312 5.857822 AACTTGTCTAGGCGTTCAAATAC 57.142 39.130 0.00 0.00 0.00 1.89
312 313 5.574055 CGTAACTTGTCTAGGCGTTCAAATA 59.426 40.000 0.00 0.00 0.00 1.40
313 314 4.387862 CGTAACTTGTCTAGGCGTTCAAAT 59.612 41.667 0.00 0.00 0.00 2.32
315 316 3.311106 CGTAACTTGTCTAGGCGTTCAA 58.689 45.455 0.00 0.00 0.00 2.69
317 318 2.257034 CCGTAACTTGTCTAGGCGTTC 58.743 52.381 0.00 0.00 0.00 3.95
318 319 1.670967 GCCGTAACTTGTCTAGGCGTT 60.671 52.381 0.00 0.00 34.94 4.84
319 320 0.108945 GCCGTAACTTGTCTAGGCGT 60.109 55.000 0.00 0.00 34.94 5.68
324 325 4.530710 AAGTGATGCCGTAACTTGTCTA 57.469 40.909 0.00 0.00 33.01 2.59
325 326 3.402628 AAGTGATGCCGTAACTTGTCT 57.597 42.857 0.00 0.00 33.01 3.41
326 327 4.219033 CAAAAGTGATGCCGTAACTTGTC 58.781 43.478 0.00 0.00 34.46 3.18
328 329 3.974401 CACAAAAGTGATGCCGTAACTTG 59.026 43.478 0.00 0.00 34.46 3.16
330 331 3.211045 ACACAAAAGTGATGCCGTAACT 58.789 40.909 2.22 0.00 0.00 2.24
331 332 3.619233 ACACAAAAGTGATGCCGTAAC 57.381 42.857 2.22 0.00 0.00 2.50
332 333 5.950758 AATACACAAAAGTGATGCCGTAA 57.049 34.783 2.22 0.00 0.00 3.18
333 334 5.950758 AAATACACAAAAGTGATGCCGTA 57.049 34.783 2.22 0.00 0.00 4.02
335 336 5.689514 TGAAAAATACACAAAAGTGATGCCG 59.310 36.000 2.22 0.00 0.00 5.69
336 337 7.224557 ACTTGAAAAATACACAAAAGTGATGCC 59.775 33.333 2.22 0.00 0.00 4.40
337 338 8.130307 ACTTGAAAAATACACAAAAGTGATGC 57.870 30.769 2.22 0.00 0.00 3.91
342 343 9.093970 GCCTAAACTTGAAAAATACACAAAAGT 57.906 29.630 0.00 0.00 0.00 2.66
345 346 7.492994 GGTGCCTAAACTTGAAAAATACACAAA 59.507 33.333 0.00 0.00 0.00 2.83
347 348 6.096987 TGGTGCCTAAACTTGAAAAATACACA 59.903 34.615 0.00 0.00 0.00 3.72
348 349 6.508777 TGGTGCCTAAACTTGAAAAATACAC 58.491 36.000 0.00 0.00 0.00 2.90
351 352 7.708752 CAGTTTGGTGCCTAAACTTGAAAAATA 59.291 33.333 11.95 0.00 43.71 1.40
352 353 6.538381 CAGTTTGGTGCCTAAACTTGAAAAAT 59.462 34.615 11.95 0.00 43.71 1.82
353 354 5.872070 CAGTTTGGTGCCTAAACTTGAAAAA 59.128 36.000 11.95 0.00 43.71 1.94
354 355 5.186021 TCAGTTTGGTGCCTAAACTTGAAAA 59.814 36.000 11.95 0.00 43.71 2.29
355 356 4.707448 TCAGTTTGGTGCCTAAACTTGAAA 59.293 37.500 11.95 0.48 43.71 2.69
356 357 4.097286 GTCAGTTTGGTGCCTAAACTTGAA 59.903 41.667 11.95 2.27 43.71 2.69
357 358 3.630312 GTCAGTTTGGTGCCTAAACTTGA 59.370 43.478 11.95 10.61 43.71 3.02
361 362 1.265905 CGGTCAGTTTGGTGCCTAAAC 59.734 52.381 6.19 6.19 38.09 2.01
362 363 1.134037 ACGGTCAGTTTGGTGCCTAAA 60.134 47.619 0.00 0.00 0.00 1.85
364 365 1.001181 GTACGGTCAGTTTGGTGCCTA 59.999 52.381 0.00 0.00 0.00 3.93
365 366 0.250166 GTACGGTCAGTTTGGTGCCT 60.250 55.000 0.00 0.00 0.00 4.75
366 367 1.232621 GGTACGGTCAGTTTGGTGCC 61.233 60.000 0.00 0.00 0.00 5.01
367 368 2.241171 GGTACGGTCAGTTTGGTGC 58.759 57.895 0.00 0.00 0.00 5.01
381 382 0.609662 TGCCCTAACTTGTCCGGTAC 59.390 55.000 0.00 0.00 0.00 3.34
382 383 1.575419 ATGCCCTAACTTGTCCGGTA 58.425 50.000 0.00 0.00 0.00 4.02
383 384 1.575419 TATGCCCTAACTTGTCCGGT 58.425 50.000 0.00 0.00 0.00 5.28
384 385 2.158813 ACATATGCCCTAACTTGTCCGG 60.159 50.000 1.58 0.00 0.00 5.14
385 386 2.872245 CACATATGCCCTAACTTGTCCG 59.128 50.000 1.58 0.00 0.00 4.79
386 387 3.214328 CCACATATGCCCTAACTTGTCC 58.786 50.000 1.58 0.00 0.00 4.02
387 388 3.627577 CACCACATATGCCCTAACTTGTC 59.372 47.826 1.58 0.00 0.00 3.18
388 389 3.010138 ACACCACATATGCCCTAACTTGT 59.990 43.478 1.58 0.00 0.00 3.16
391 392 5.646692 AATACACCACATATGCCCTAACT 57.353 39.130 1.58 0.00 0.00 2.24
392 393 7.501225 AGTTAAATACACCACATATGCCCTAAC 59.499 37.037 1.58 0.00 0.00 2.34
393 394 7.579105 AGTTAAATACACCACATATGCCCTAA 58.421 34.615 1.58 0.00 0.00 2.69
394 395 7.071950 AGAGTTAAATACACCACATATGCCCTA 59.928 37.037 1.58 0.00 0.00 3.53
395 396 6.013554 AGTTAAATACACCACATATGCCCT 57.986 37.500 1.58 0.00 0.00 5.19
397 398 7.568199 AAGAGTTAAATACACCACATATGCC 57.432 36.000 1.58 0.00 0.00 4.40
430 431 8.743085 ACATGTTTAAGAGTGCATCTAATGAT 57.257 30.769 0.00 0.00 37.23 2.45
623 625 3.758755 TGATTACCTCTGCTGGCTATG 57.241 47.619 0.00 0.00 0.00 2.23
683 688 9.720769 GTTAGCCAGCTATTAATAAGGTGATAA 57.279 33.333 17.97 14.52 43.52 1.75
770 2432 3.390521 CGCCAGGTGTCTAGCCCA 61.391 66.667 0.00 0.00 0.00 5.36
778 2440 2.906897 CCAGCAAACGCCAGGTGT 60.907 61.111 0.00 0.00 0.00 4.16
780 2442 4.892965 TGCCAGCAAACGCCAGGT 62.893 61.111 0.00 0.00 0.00 4.00
781 2443 4.347453 GTGCCAGCAAACGCCAGG 62.347 66.667 0.00 0.00 0.00 4.45
783 2445 3.286751 GAGTGCCAGCAAACGCCA 61.287 61.111 0.00 0.00 0.00 5.69
784 2446 2.980233 AGAGTGCCAGCAAACGCC 60.980 61.111 0.00 0.00 0.00 5.68
786 2448 2.253452 GCAGAGTGCCAGCAAACG 59.747 61.111 0.00 0.00 37.42 3.60
806 2468 6.790929 GTTAGATTAACCAATGCCTGCGGC 62.791 50.000 11.92 11.92 39.85 6.53
807 2469 1.392589 AGATTAACCAATGCCTGCGG 58.607 50.000 0.00 0.00 0.00 5.69
808 2470 3.627577 AGTTAGATTAACCAATGCCTGCG 59.372 43.478 0.00 0.00 39.47 5.18
809 2471 4.884164 AGAGTTAGATTAACCAATGCCTGC 59.116 41.667 0.00 0.00 39.47 4.85
810 2472 6.708054 CCTAGAGTTAGATTAACCAATGCCTG 59.292 42.308 0.00 0.00 39.47 4.85
811 2473 6.387220 ACCTAGAGTTAGATTAACCAATGCCT 59.613 38.462 0.00 0.00 39.47 4.75
812 2474 6.483640 CACCTAGAGTTAGATTAACCAATGCC 59.516 42.308 0.00 0.00 39.47 4.40
813 2475 7.048512 ACACCTAGAGTTAGATTAACCAATGC 58.951 38.462 0.00 0.00 39.47 3.56
814 2476 8.883731 CAACACCTAGAGTTAGATTAACCAATG 58.116 37.037 0.00 0.00 39.47 2.82
815 2477 8.603304 ACAACACCTAGAGTTAGATTAACCAAT 58.397 33.333 0.00 0.00 39.47 3.16
816 2478 7.970102 ACAACACCTAGAGTTAGATTAACCAA 58.030 34.615 0.00 0.00 39.47 3.67
817 2479 7.549147 ACAACACCTAGAGTTAGATTAACCA 57.451 36.000 0.00 0.00 39.47 3.67
818 2480 8.843885 AAACAACACCTAGAGTTAGATTAACC 57.156 34.615 0.00 0.00 39.47 2.85
819 2481 9.708092 AGAAACAACACCTAGAGTTAGATTAAC 57.292 33.333 0.00 0.00 38.94 2.01
822 2484 9.628500 AAAAGAAACAACACCTAGAGTTAGATT 57.372 29.630 0.00 0.00 0.00 2.40
823 2485 9.628500 AAAAAGAAACAACACCTAGAGTTAGAT 57.372 29.630 0.00 0.00 0.00 1.98
824 2486 8.889717 CAAAAAGAAACAACACCTAGAGTTAGA 58.110 33.333 0.00 0.00 0.00 2.10
825 2487 8.674607 ACAAAAAGAAACAACACCTAGAGTTAG 58.325 33.333 0.00 0.00 0.00 2.34
826 2488 8.455682 CACAAAAAGAAACAACACCTAGAGTTA 58.544 33.333 0.00 0.00 0.00 2.24
827 2489 7.312899 CACAAAAAGAAACAACACCTAGAGTT 58.687 34.615 0.00 0.00 0.00 3.01
828 2490 6.127730 CCACAAAAAGAAACAACACCTAGAGT 60.128 38.462 0.00 0.00 0.00 3.24
829 2491 6.127730 ACCACAAAAAGAAACAACACCTAGAG 60.128 38.462 0.00 0.00 0.00 2.43
830 2492 5.712917 ACCACAAAAAGAAACAACACCTAGA 59.287 36.000 0.00 0.00 0.00 2.43
831 2493 5.961272 ACCACAAAAAGAAACAACACCTAG 58.039 37.500 0.00 0.00 0.00 3.02
832 2494 5.986501 ACCACAAAAAGAAACAACACCTA 57.013 34.783 0.00 0.00 0.00 3.08
833 2495 4.882842 ACCACAAAAAGAAACAACACCT 57.117 36.364 0.00 0.00 0.00 4.00
834 2496 5.699001 AGAAACCACAAAAAGAAACAACACC 59.301 36.000 0.00 0.00 0.00 4.16
835 2497 6.589454 CAGAAACCACAAAAAGAAACAACAC 58.411 36.000 0.00 0.00 0.00 3.32
836 2498 5.178438 GCAGAAACCACAAAAAGAAACAACA 59.822 36.000 0.00 0.00 0.00 3.33
837 2499 5.617609 GCAGAAACCACAAAAAGAAACAAC 58.382 37.500 0.00 0.00 0.00 3.32
838 2500 4.387256 CGCAGAAACCACAAAAAGAAACAA 59.613 37.500 0.00 0.00 0.00 2.83
839 2501 3.923461 CGCAGAAACCACAAAAAGAAACA 59.077 39.130 0.00 0.00 0.00 2.83
840 2502 4.031314 GTCGCAGAAACCACAAAAAGAAAC 59.969 41.667 0.00 0.00 39.69 2.78
841 2503 4.170256 GTCGCAGAAACCACAAAAAGAAA 58.830 39.130 0.00 0.00 39.69 2.52
842 2504 3.729462 CGTCGCAGAAACCACAAAAAGAA 60.729 43.478 0.00 0.00 39.69 2.52
843 2505 2.223157 CGTCGCAGAAACCACAAAAAGA 60.223 45.455 0.00 0.00 39.69 2.52
844 2506 2.108700 CGTCGCAGAAACCACAAAAAG 58.891 47.619 0.00 0.00 39.69 2.27
845 2507 1.469308 ACGTCGCAGAAACCACAAAAA 59.531 42.857 0.00 0.00 39.69 1.94
846 2508 1.088306 ACGTCGCAGAAACCACAAAA 58.912 45.000 0.00 0.00 39.69 2.44
847 2509 1.062880 GAACGTCGCAGAAACCACAAA 59.937 47.619 0.00 0.00 39.69 2.83
848 2510 0.653636 GAACGTCGCAGAAACCACAA 59.346 50.000 0.00 0.00 39.69 3.33
849 2511 0.179094 AGAACGTCGCAGAAACCACA 60.179 50.000 0.00 0.00 39.69 4.17
850 2512 0.507358 GAGAACGTCGCAGAAACCAC 59.493 55.000 0.00 0.00 39.69 4.16
851 2513 0.387929 AGAGAACGTCGCAGAAACCA 59.612 50.000 0.00 0.00 39.69 3.67
852 2514 1.499049 AAGAGAACGTCGCAGAAACC 58.501 50.000 0.00 0.00 39.69 3.27
853 2515 4.703899 TTAAAGAGAACGTCGCAGAAAC 57.296 40.909 0.00 0.00 39.69 2.78
854 2516 4.317558 CGTTTAAAGAGAACGTCGCAGAAA 60.318 41.667 0.00 0.00 43.44 2.52
855 2517 3.180980 CGTTTAAAGAGAACGTCGCAGAA 59.819 43.478 0.00 0.00 43.44 3.02
856 2518 2.722629 CGTTTAAAGAGAACGTCGCAGA 59.277 45.455 0.00 0.00 43.44 4.26
857 2519 3.073022 CGTTTAAAGAGAACGTCGCAG 57.927 47.619 0.00 0.00 43.44 5.18
864 2526 3.317149 AGGGGCAAACGTTTAAAGAGAAC 59.683 43.478 14.20 0.00 0.00 3.01
865 2527 3.558033 AGGGGCAAACGTTTAAAGAGAA 58.442 40.909 14.20 0.00 0.00 2.87
866 2528 3.143728 GAGGGGCAAACGTTTAAAGAGA 58.856 45.455 14.20 0.00 0.00 3.10
867 2529 3.058224 CAGAGGGGCAAACGTTTAAAGAG 60.058 47.826 14.20 1.85 0.00 2.85
868 2530 2.882137 CAGAGGGGCAAACGTTTAAAGA 59.118 45.455 14.20 0.00 0.00 2.52
869 2531 2.621526 ACAGAGGGGCAAACGTTTAAAG 59.378 45.455 14.20 2.65 0.00 1.85
870 2532 2.657143 ACAGAGGGGCAAACGTTTAAA 58.343 42.857 14.20 0.00 0.00 1.52
871 2533 2.351706 ACAGAGGGGCAAACGTTTAA 57.648 45.000 14.20 0.00 0.00 1.52
872 2534 3.488778 TTACAGAGGGGCAAACGTTTA 57.511 42.857 14.20 0.00 0.00 2.01
873 2535 2.351706 TTACAGAGGGGCAAACGTTT 57.648 45.000 7.96 7.96 0.00 3.60
874 2536 2.351706 TTTACAGAGGGGCAAACGTT 57.648 45.000 0.00 0.00 0.00 3.99
875 2537 2.556622 CAATTTACAGAGGGGCAAACGT 59.443 45.455 0.00 0.00 0.00 3.99
876 2538 2.671070 GCAATTTACAGAGGGGCAAACG 60.671 50.000 0.00 0.00 0.00 3.60
877 2539 2.671070 CGCAATTTACAGAGGGGCAAAC 60.671 50.000 0.00 0.00 0.00 2.93
878 2540 1.543802 CGCAATTTACAGAGGGGCAAA 59.456 47.619 0.00 0.00 0.00 3.68
879 2541 1.173043 CGCAATTTACAGAGGGGCAA 58.827 50.000 0.00 0.00 0.00 4.52
880 2542 0.037590 ACGCAATTTACAGAGGGGCA 59.962 50.000 0.00 0.00 0.00 5.36
881 2543 1.132453 GAACGCAATTTACAGAGGGGC 59.868 52.381 0.00 0.00 0.00 5.80
882 2544 2.711542 AGAACGCAATTTACAGAGGGG 58.288 47.619 0.00 0.00 0.00 4.79
883 2545 4.215399 TGAAAGAACGCAATTTACAGAGGG 59.785 41.667 0.00 0.00 0.00 4.30
884 2546 5.147162 GTGAAAGAACGCAATTTACAGAGG 58.853 41.667 0.00 0.00 0.00 3.69
885 2547 5.147162 GGTGAAAGAACGCAATTTACAGAG 58.853 41.667 0.00 0.00 0.00 3.35
886 2548 4.576873 TGGTGAAAGAACGCAATTTACAGA 59.423 37.500 0.00 0.00 0.00 3.41
887 2549 4.854399 TGGTGAAAGAACGCAATTTACAG 58.146 39.130 0.00 0.00 0.00 2.74
888 2550 4.902443 TGGTGAAAGAACGCAATTTACA 57.098 36.364 0.00 0.00 0.00 2.41
889 2551 5.699839 AGATGGTGAAAGAACGCAATTTAC 58.300 37.500 0.00 0.00 0.00 2.01
890 2552 5.705441 AGAGATGGTGAAAGAACGCAATTTA 59.295 36.000 0.00 0.00 0.00 1.40
891 2553 4.520492 AGAGATGGTGAAAGAACGCAATTT 59.480 37.500 0.00 0.00 0.00 1.82
892 2554 4.074970 AGAGATGGTGAAAGAACGCAATT 58.925 39.130 0.00 0.00 0.00 2.32
893 2555 3.679389 AGAGATGGTGAAAGAACGCAAT 58.321 40.909 0.00 0.00 0.00 3.56
894 2556 3.126001 AGAGATGGTGAAAGAACGCAA 57.874 42.857 0.00 0.00 0.00 4.85
895 2557 2.839486 AGAGATGGTGAAAGAACGCA 57.161 45.000 0.00 0.00 0.00 5.24
896 2558 3.330267 AGAAGAGATGGTGAAAGAACGC 58.670 45.455 0.00 0.00 0.00 4.84
897 2559 8.191446 TCTTATAGAAGAGATGGTGAAAGAACG 58.809 37.037 0.00 0.00 36.75 3.95
898 2560 9.877178 TTCTTATAGAAGAGATGGTGAAAGAAC 57.123 33.333 0.00 0.00 42.66 3.01
902 2564 9.672673 CCTTTTCTTATAGAAGAGATGGTGAAA 57.327 33.333 12.10 3.61 42.66 2.69
903 2565 7.770897 GCCTTTTCTTATAGAAGAGATGGTGAA 59.229 37.037 18.19 0.77 42.66 3.18
904 2566 7.092891 TGCCTTTTCTTATAGAAGAGATGGTGA 60.093 37.037 18.19 7.77 42.66 4.02
905 2567 7.050377 TGCCTTTTCTTATAGAAGAGATGGTG 58.950 38.462 18.19 3.16 42.66 4.17
906 2568 7.092668 ACTGCCTTTTCTTATAGAAGAGATGGT 60.093 37.037 18.19 2.91 42.66 3.55
907 2569 7.226325 CACTGCCTTTTCTTATAGAAGAGATGG 59.774 40.741 14.73 14.73 42.66 3.51
908 2570 7.254727 GCACTGCCTTTTCTTATAGAAGAGATG 60.255 40.741 8.16 0.00 42.66 2.90
909 2571 6.765512 GCACTGCCTTTTCTTATAGAAGAGAT 59.234 38.462 8.16 0.00 42.66 2.75
910 2572 6.070538 AGCACTGCCTTTTCTTATAGAAGAGA 60.071 38.462 8.16 0.00 42.66 3.10
911 2573 6.112058 AGCACTGCCTTTTCTTATAGAAGAG 58.888 40.000 0.00 0.00 42.66 2.85
912 2574 6.054860 AGCACTGCCTTTTCTTATAGAAGA 57.945 37.500 0.00 0.00 40.04 2.87
913 2575 6.597280 AGAAGCACTGCCTTTTCTTATAGAAG 59.403 38.462 0.00 0.00 35.37 2.85
914 2576 6.372659 CAGAAGCACTGCCTTTTCTTATAGAA 59.627 38.462 0.00 0.00 39.86 2.10
915 2577 5.877012 CAGAAGCACTGCCTTTTCTTATAGA 59.123 40.000 0.00 0.00 39.86 1.98
916 2578 6.116680 CAGAAGCACTGCCTTTTCTTATAG 57.883 41.667 0.00 0.00 39.86 1.31
930 2592 0.685097 TAGAAACCGGCAGAAGCACT 59.315 50.000 0.00 0.00 44.61 4.40
931 2593 1.519408 TTAGAAACCGGCAGAAGCAC 58.481 50.000 0.00 0.00 44.61 4.40
932 2594 2.264005 TTTAGAAACCGGCAGAAGCA 57.736 45.000 0.00 0.00 44.61 3.91
933 2595 3.636282 TTTTTAGAAACCGGCAGAAGC 57.364 42.857 0.00 0.00 41.10 3.86
956 2618 3.084786 GTGCTGCTGACCCTAGATTTTT 58.915 45.455 0.00 0.00 0.00 1.94
957 2619 2.619074 GGTGCTGCTGACCCTAGATTTT 60.619 50.000 0.00 0.00 0.00 1.82
958 2620 1.065126 GGTGCTGCTGACCCTAGATTT 60.065 52.381 0.00 0.00 0.00 2.17
959 2621 0.543749 GGTGCTGCTGACCCTAGATT 59.456 55.000 0.00 0.00 0.00 2.40
960 2622 2.216148 GGTGCTGCTGACCCTAGAT 58.784 57.895 0.00 0.00 0.00 1.98
961 2623 3.713650 GGTGCTGCTGACCCTAGA 58.286 61.111 0.00 0.00 0.00 2.43
966 2628 1.227380 CTATCGGGTGCTGCTGACC 60.227 63.158 0.00 0.22 0.00 4.02
967 2629 1.884926 GCTATCGGGTGCTGCTGAC 60.885 63.158 0.00 0.00 0.00 3.51
968 2630 2.358372 TGCTATCGGGTGCTGCTGA 61.358 57.895 0.00 0.00 0.00 4.26
969 2631 2.176273 GTGCTATCGGGTGCTGCTG 61.176 63.158 0.00 0.00 0.00 4.41
970 2632 2.187946 GTGCTATCGGGTGCTGCT 59.812 61.111 0.00 0.00 0.00 4.24
971 2633 2.897350 GGTGCTATCGGGTGCTGC 60.897 66.667 0.00 0.00 0.00 5.25
976 2638 2.285069 TGGGTGGTGCTATCGGGT 60.285 61.111 0.00 0.00 0.00 5.28
1047 2880 4.802051 ACATCCAGCGCCGCCATT 62.802 61.111 4.98 0.00 0.00 3.16
1065 2919 3.379445 GAACGGACGAGGCTGGGA 61.379 66.667 0.51 0.00 0.00 4.37
1471 3340 4.069232 CGCCTCTCGTGCCCAGAA 62.069 66.667 0.00 0.00 0.00 3.02
1605 3480 0.601841 TTTCAAAGTCGGGGAGCGAC 60.602 55.000 0.00 0.00 36.71 5.19
1655 3542 0.390124 AACGTAGAACAAGCCGTCCA 59.610 50.000 0.00 0.00 32.30 4.02
2184 4077 2.605094 CCGCAACATCGGGTGATAG 58.395 57.895 0.00 0.00 45.38 2.08
2204 4097 8.370940 TCTTGATGTTCCATATACCAAGATCTC 58.629 37.037 0.00 0.00 35.18 2.75
2217 4110 6.541641 GCATACTTCTCTTCTTGATGTTCCAT 59.458 38.462 0.00 0.00 0.00 3.41
2414 4310 1.369091 GCATTGGGCTCATCGACGTT 61.369 55.000 0.00 0.00 40.25 3.99
2434 4330 2.265739 GCTCATGAGTCCACGCCA 59.734 61.111 23.38 0.00 0.00 5.69
2469 4365 0.175760 GGCATCTTAGGCTGTCGACA 59.824 55.000 18.88 18.88 0.00 4.35
2471 4368 1.823295 GGGCATCTTAGGCTGTCGA 59.177 57.895 0.00 0.00 0.00 4.20
2475 4372 1.592669 CGACGGGCATCTTAGGCTG 60.593 63.158 0.00 0.00 45.23 4.85
2501 4398 2.502080 CCGCAGTCGTCGTCTGAC 60.502 66.667 21.21 12.09 41.91 3.51
2502 4399 3.733960 CCCGCAGTCGTCGTCTGA 61.734 66.667 21.21 0.00 35.20 3.27
2550 4447 3.595173 GACGCCAGCCCAAAAATAAATT 58.405 40.909 0.00 0.00 0.00 1.82
2571 4468 1.001597 GCTGTTCTACCTATCGTCCCG 60.002 57.143 0.00 0.00 0.00 5.14
2580 4477 3.181489 GCGTACATACAGCTGTTCTACCT 60.181 47.826 27.06 0.00 0.00 3.08
2586 4483 3.550233 CGATAGGCGTACATACAGCTGTT 60.550 47.826 27.06 10.01 34.64 3.16
2630 4546 1.469308 TGACCTTTGACAAAACGCGTT 59.531 42.857 20.79 20.79 0.00 4.84
2633 4549 3.443976 ACATTGACCTTTGACAAAACGC 58.556 40.909 1.62 0.00 30.28 4.84
2663 4579 1.503784 TGGATACCCCAAAACCCACAA 59.496 47.619 0.00 0.00 43.29 3.33
2706 4624 7.518161 TCTAAATCGTTTTGCACAATAGTCTG 58.482 34.615 1.69 0.00 0.00 3.51
2723 4641 7.041848 TGCAACTGGATCACATATTCTAAATCG 60.042 37.037 0.00 0.00 0.00 3.34
2765 4683 7.439056 AGAAAAAGTGACATCGATGCAAAATTT 59.561 29.630 25.11 17.59 0.00 1.82
2769 4707 5.437289 AGAAAAAGTGACATCGATGCAAA 57.563 34.783 25.11 8.20 0.00 3.68
2770 4708 5.437289 AAGAAAAAGTGACATCGATGCAA 57.563 34.783 25.11 10.85 0.00 4.08
2772 4710 5.215160 ACAAAGAAAAAGTGACATCGATGC 58.785 37.500 25.11 17.40 0.00 3.91
2773 4711 7.431960 TCAAACAAAGAAAAAGTGACATCGATG 59.568 33.333 23.68 23.68 0.00 3.84
2774 4712 7.479980 TCAAACAAAGAAAAAGTGACATCGAT 58.520 30.769 0.00 0.00 0.00 3.59
2775 4713 6.847400 TCAAACAAAGAAAAAGTGACATCGA 58.153 32.000 0.00 0.00 0.00 3.59
2776 4714 7.645340 AGATCAAACAAAGAAAAAGTGACATCG 59.355 33.333 0.00 0.00 0.00 3.84
2777 4715 8.862550 AGATCAAACAAAGAAAAAGTGACATC 57.137 30.769 0.00 0.00 0.00 3.06
2850 4788 8.237811 AGGTCAATTACTCAAAGTCAAACAAT 57.762 30.769 0.00 0.00 0.00 2.71
2950 4894 9.897744 TGTATTTCTCAATCATTGTTTTGACTC 57.102 29.630 0.00 0.00 0.00 3.36
2952 4896 8.915654 GGTGTATTTCTCAATCATTGTTTTGAC 58.084 33.333 0.00 0.00 0.00 3.18
2962 4906 4.264253 CAGCCAGGTGTATTTCTCAATCA 58.736 43.478 0.00 0.00 0.00 2.57
2978 4922 7.445121 TCATATGAGATTAAGTTACCAGCCAG 58.555 38.462 0.00 0.00 0.00 4.85
3043 10060 6.983906 AGGATGGTTTGTCTTTGAAGATTT 57.016 33.333 0.00 0.00 37.39 2.17
3153 10173 8.971073 TGCAAGAAGGATATCGAAGATATGATA 58.029 33.333 7.22 0.00 45.12 2.15
3265 10285 7.819415 AGCCAAAAGGAAAATAAATCTTACAGC 59.181 33.333 0.00 0.00 0.00 4.40
3281 10302 7.504403 TGTCAAAAATGATTTAGCCAAAAGGA 58.496 30.769 0.00 0.00 0.00 3.36
3282 10303 7.727331 TGTCAAAAATGATTTAGCCAAAAGG 57.273 32.000 0.00 0.00 0.00 3.11
3364 10385 3.305064 GCTCCGGTAAAAATGACTTTGCA 60.305 43.478 0.00 0.00 0.00 4.08
3402 10423 1.682854 GTACATCATTGGTGGCATGGG 59.317 52.381 1.31 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.