Multiple sequence alignment - TraesCS2A01G423800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G423800 chr2A 100.000 3819 0 0 1 3819 678362328 678366146 0.000000e+00 7053
1 TraesCS2A01G423800 chr2D 95.149 2989 123 13 847 3819 535098750 535101732 0.000000e+00 4697
2 TraesCS2A01G423800 chr2D 90.909 385 13 5 132 516 535098367 535098729 7.370000e-137 497
3 TraesCS2A01G423800 chr2D 98.324 179 2 1 1 179 535098191 535098368 2.860000e-81 313
4 TraesCS2A01G423800 chr2D 92.810 153 11 0 543 695 79056167 79056319 4.970000e-54 222
5 TraesCS2A01G423800 chr2B 94.580 1679 68 6 927 2585 636467188 636468863 0.000000e+00 2575
6 TraesCS2A01G423800 chr2B 93.424 1247 66 2 2573 3819 636470288 636471518 0.000000e+00 1834
7 TraesCS2A01G423800 chr2B 91.876 517 17 7 1 516 636463136 636463628 0.000000e+00 699
8 TraesCS2A01G423800 chr2B 89.474 171 15 3 536 704 403702442 403702273 2.990000e-51 213
9 TraesCS2A01G423800 chr2B 95.349 86 4 0 847 932 636463651 636463736 1.850000e-28 137
10 TraesCS2A01G423800 chr3B 74.291 2221 496 54 1077 3269 690442829 690445002 0.000000e+00 869
11 TraesCS2A01G423800 chr3B 73.013 1560 362 49 1092 2626 43527642 43526117 9.530000e-136 494
12 TraesCS2A01G423800 chr3B 91.772 158 13 0 538 695 396271874 396272031 1.790000e-53 220
13 TraesCS2A01G423800 chr3D 82.486 531 89 3 2734 3260 523562766 523563296 2.690000e-126 462
14 TraesCS2A01G423800 chr3D 90.798 163 14 1 535 696 288550619 288550457 2.310000e-52 217
15 TraesCS2A01G423800 chr4D 93.671 158 8 2 540 695 74079347 74079504 6.380000e-58 235
16 TraesCS2A01G423800 chr7D 93.333 150 10 0 546 695 34757015 34756866 4.970000e-54 222
17 TraesCS2A01G423800 chr7D 90.058 171 14 3 542 710 436459778 436459609 6.420000e-53 219
18 TraesCS2A01G423800 chr6D 91.824 159 12 1 538 695 392273068 392273226 1.790000e-53 220
19 TraesCS2A01G423800 chr6D 91.304 161 13 1 536 695 410398439 410398279 6.420000e-53 219


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G423800 chr2A 678362328 678366146 3818 False 7053.000000 7053 100.00000 1 3819 1 chr2A.!!$F1 3818
1 TraesCS2A01G423800 chr2D 535098191 535101732 3541 False 1835.666667 4697 94.79400 1 3819 3 chr2D.!!$F2 3818
2 TraesCS2A01G423800 chr2B 636463136 636471518 8382 False 1311.250000 2575 93.80725 1 3819 4 chr2B.!!$F1 3818
3 TraesCS2A01G423800 chr3B 690442829 690445002 2173 False 869.000000 869 74.29100 1077 3269 1 chr3B.!!$F2 2192
4 TraesCS2A01G423800 chr3B 43526117 43527642 1525 True 494.000000 494 73.01300 1092 2626 1 chr3B.!!$R1 1534
5 TraesCS2A01G423800 chr3D 523562766 523563296 530 False 462.000000 462 82.48600 2734 3260 1 chr3D.!!$F1 526

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 328 0.033208 TTAGGGAGCTGGGCCATTTG 60.033 55.0 6.72 0.0 0.00 2.32 F
827 883 0.848053 TTTCCCCCTTCGTTTGACCT 59.152 50.0 0.00 0.0 0.00 3.85 F
1860 5395 0.100682 GCGACGTCATCCTTGAGCTA 59.899 55.0 17.16 0.0 30.85 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1206 4734 1.067821 GACCATGAGCTTAGGGACTCG 59.932 57.143 16.93 0.0 41.75 4.18 R
2283 5818 2.511659 ACTACACCACTGAGCGAGTTA 58.488 47.619 0.00 0.0 29.75 2.24 R
2853 7827 0.321564 CCAGATTGCCAACGTCTCCA 60.322 55.000 0.00 0.0 0.00 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.007405 TGTATAATGTAGCTCAGCACTAGAAA 57.993 34.615 0.00 0.00 0.00 2.52
112 113 4.202441 AGGATATTACTGCCACTTGCTTG 58.798 43.478 0.00 0.00 42.00 4.01
279 327 0.259938 CTTAGGGAGCTGGGCCATTT 59.740 55.000 6.72 0.00 0.00 2.32
280 328 0.033208 TTAGGGAGCTGGGCCATTTG 60.033 55.000 6.72 0.00 0.00 2.32
281 329 0.918799 TAGGGAGCTGGGCCATTTGA 60.919 55.000 6.72 0.00 0.00 2.69
282 330 1.305213 GGGAGCTGGGCCATTTGAA 60.305 57.895 6.72 0.00 0.00 2.69
284 332 1.197812 GGAGCTGGGCCATTTGAATT 58.802 50.000 6.72 0.00 0.00 2.17
285 333 2.387757 GGAGCTGGGCCATTTGAATTA 58.612 47.619 6.72 0.00 0.00 1.40
286 334 2.967887 GGAGCTGGGCCATTTGAATTAT 59.032 45.455 6.72 0.00 0.00 1.28
287 335 3.243975 GGAGCTGGGCCATTTGAATTATG 60.244 47.826 6.72 0.00 0.00 1.90
288 336 3.638160 GAGCTGGGCCATTTGAATTATGA 59.362 43.478 6.72 0.00 0.00 2.15
289 337 4.032310 AGCTGGGCCATTTGAATTATGAA 58.968 39.130 6.72 0.00 0.00 2.57
290 338 4.100498 AGCTGGGCCATTTGAATTATGAAG 59.900 41.667 6.72 0.00 0.00 3.02
291 339 4.141869 GCTGGGCCATTTGAATTATGAAGT 60.142 41.667 6.72 0.00 0.00 3.01
292 340 5.068987 GCTGGGCCATTTGAATTATGAAGTA 59.931 40.000 6.72 0.00 0.00 2.24
293 341 6.239402 GCTGGGCCATTTGAATTATGAAGTAT 60.239 38.462 6.72 0.00 0.00 2.12
294 342 7.673641 TGGGCCATTTGAATTATGAAGTATT 57.326 32.000 0.00 0.00 0.00 1.89
295 343 7.499292 TGGGCCATTTGAATTATGAAGTATTG 58.501 34.615 0.00 0.00 0.00 1.90
296 344 7.125507 TGGGCCATTTGAATTATGAAGTATTGT 59.874 33.333 0.00 0.00 0.00 2.71
297 345 7.986889 GGGCCATTTGAATTATGAAGTATTGTT 59.013 33.333 4.39 0.00 0.00 2.83
328 376 6.495181 CCATGAACTGTAGATAGACCCTATGT 59.505 42.308 0.00 0.00 0.00 2.29
395 443 2.029838 ATCTTGACCATGCGGAGTTC 57.970 50.000 0.00 0.00 35.59 3.01
445 493 9.796120 TTAAACATTCAAAACTTTGACTACCAG 57.204 29.630 4.38 0.00 45.99 4.00
531 587 9.662545 AAAGAAACTTGTGTTCAAAACAAATTG 57.337 25.926 0.00 0.00 44.16 2.32
532 588 7.805700 AGAAACTTGTGTTCAAAACAAATTGG 58.194 30.769 0.00 0.00 44.16 3.16
533 589 6.493449 AACTTGTGTTCAAAACAAATTGGG 57.507 33.333 0.00 0.00 44.16 4.12
534 590 5.555966 ACTTGTGTTCAAAACAAATTGGGT 58.444 33.333 0.00 0.00 44.16 4.51
535 591 6.000840 ACTTGTGTTCAAAACAAATTGGGTT 58.999 32.000 0.00 0.00 44.16 4.11
536 592 6.488344 ACTTGTGTTCAAAACAAATTGGGTTT 59.512 30.769 0.00 0.00 44.16 3.27
537 593 6.800892 CTTGTGTTCAAAACAAATTGGGTTTG 59.199 34.615 16.07 16.07 44.16 2.93
550 606 8.716646 CAAATTGGGTTTGTAAATATTCCCTC 57.283 34.615 8.64 0.00 41.80 4.30
551 607 7.432148 AATTGGGTTTGTAAATATTCCCTCC 57.568 36.000 8.64 0.00 36.23 4.30
552 608 4.528920 TGGGTTTGTAAATATTCCCTCCG 58.471 43.478 8.64 0.00 36.23 4.63
553 609 4.018233 TGGGTTTGTAAATATTCCCTCCGT 60.018 41.667 8.64 0.00 36.23 4.69
554 610 4.951715 GGGTTTGTAAATATTCCCTCCGTT 59.048 41.667 1.26 0.00 32.89 4.44
555 611 5.066893 GGGTTTGTAAATATTCCCTCCGTTC 59.933 44.000 1.26 0.00 32.89 3.95
556 612 5.648960 GGTTTGTAAATATTCCCTCCGTTCA 59.351 40.000 0.00 0.00 0.00 3.18
557 613 6.403964 GGTTTGTAAATATTCCCTCCGTTCAC 60.404 42.308 0.00 0.00 0.00 3.18
558 614 5.423704 TGTAAATATTCCCTCCGTTCACA 57.576 39.130 0.00 0.00 0.00 3.58
559 615 5.806818 TGTAAATATTCCCTCCGTTCACAA 58.193 37.500 0.00 0.00 0.00 3.33
560 616 6.239396 TGTAAATATTCCCTCCGTTCACAAA 58.761 36.000 0.00 0.00 0.00 2.83
561 617 6.887545 TGTAAATATTCCCTCCGTTCACAAAT 59.112 34.615 0.00 0.00 0.00 2.32
562 618 8.047911 TGTAAATATTCCCTCCGTTCACAAATA 58.952 33.333 0.00 0.00 0.00 1.40
563 619 6.937436 AATATTCCCTCCGTTCACAAATAC 57.063 37.500 0.00 0.00 0.00 1.89
564 620 3.773418 TTCCCTCCGTTCACAAATACA 57.227 42.857 0.00 0.00 0.00 2.29
565 621 3.773418 TCCCTCCGTTCACAAATACAA 57.227 42.857 0.00 0.00 0.00 2.41
566 622 3.670625 TCCCTCCGTTCACAAATACAAG 58.329 45.455 0.00 0.00 0.00 3.16
567 623 3.325425 TCCCTCCGTTCACAAATACAAGA 59.675 43.478 0.00 0.00 0.00 3.02
568 624 4.019681 TCCCTCCGTTCACAAATACAAGAT 60.020 41.667 0.00 0.00 0.00 2.40
569 625 4.094887 CCCTCCGTTCACAAATACAAGATG 59.905 45.833 0.00 0.00 0.00 2.90
570 626 4.695455 CCTCCGTTCACAAATACAAGATGT 59.305 41.667 0.00 0.00 0.00 3.06
571 627 5.181245 CCTCCGTTCACAAATACAAGATGTT 59.819 40.000 0.00 0.00 0.00 2.71
572 628 6.236017 TCCGTTCACAAATACAAGATGTTC 57.764 37.500 0.00 0.00 0.00 3.18
573 629 5.995282 TCCGTTCACAAATACAAGATGTTCT 59.005 36.000 0.00 0.00 0.00 3.01
574 630 7.156000 TCCGTTCACAAATACAAGATGTTCTA 58.844 34.615 0.00 0.00 0.00 2.10
575 631 7.658167 TCCGTTCACAAATACAAGATGTTCTAA 59.342 33.333 0.00 0.00 0.00 2.10
576 632 7.744715 CCGTTCACAAATACAAGATGTTCTAAC 59.255 37.037 0.00 0.00 0.00 2.34
577 633 8.495949 CGTTCACAAATACAAGATGTTCTAACT 58.504 33.333 0.00 0.00 0.00 2.24
602 658 7.756395 TTTTTGTGAACCGGGTTTATATACA 57.244 32.000 14.69 11.30 0.00 2.29
603 659 6.740411 TTTGTGAACCGGGTTTATATACAC 57.260 37.500 14.69 15.59 0.00 2.90
604 660 5.417754 TGTGAACCGGGTTTATATACACA 57.582 39.130 19.83 19.83 34.24 3.72
605 661 5.177326 TGTGAACCGGGTTTATATACACAC 58.823 41.667 19.83 16.90 32.23 3.82
606 662 4.268405 GTGAACCGGGTTTATATACACACG 59.732 45.833 14.69 15.24 0.00 4.49
607 663 4.081752 TGAACCGGGTTTATATACACACGT 60.082 41.667 19.36 4.98 0.00 4.49
608 664 4.470334 ACCGGGTTTATATACACACGTT 57.530 40.909 19.36 5.51 0.00 3.99
609 665 4.831107 ACCGGGTTTATATACACACGTTT 58.169 39.130 19.36 6.18 0.00 3.60
610 666 5.244755 ACCGGGTTTATATACACACGTTTT 58.755 37.500 19.36 4.03 0.00 2.43
611 667 6.402222 ACCGGGTTTATATACACACGTTTTA 58.598 36.000 19.36 0.00 0.00 1.52
612 668 6.534793 ACCGGGTTTATATACACACGTTTTAG 59.465 38.462 19.36 8.56 0.00 1.85
613 669 6.534793 CCGGGTTTATATACACACGTTTTAGT 59.465 38.462 19.36 0.00 0.00 2.24
614 670 7.393327 CGGGTTTATATACACACGTTTTAGTG 58.607 38.462 14.20 2.47 46.83 2.74
625 681 5.658674 CACGTTTTAGTGTGTTTGTTCAC 57.341 39.130 0.00 0.00 37.35 3.18
626 682 5.147865 CACGTTTTAGTGTGTTTGTTCACA 58.852 37.500 0.00 0.00 44.54 3.58
636 692 5.932021 GTGTTTGTTCACACATTTCAGTC 57.068 39.130 0.00 0.00 45.57 3.51
637 693 4.798387 GTGTTTGTTCACACATTTCAGTCC 59.202 41.667 0.00 0.00 45.57 3.85
638 694 3.961477 TTGTTCACACATTTCAGTCCG 57.039 42.857 0.00 0.00 31.06 4.79
639 695 2.912771 TGTTCACACATTTCAGTCCGT 58.087 42.857 0.00 0.00 0.00 4.69
640 696 4.061357 TGTTCACACATTTCAGTCCGTA 57.939 40.909 0.00 0.00 0.00 4.02
641 697 4.637276 TGTTCACACATTTCAGTCCGTAT 58.363 39.130 0.00 0.00 0.00 3.06
642 698 4.450757 TGTTCACACATTTCAGTCCGTATG 59.549 41.667 0.00 0.00 0.00 2.39
643 699 4.265904 TCACACATTTCAGTCCGTATGT 57.734 40.909 0.00 0.00 0.00 2.29
644 700 5.394224 TCACACATTTCAGTCCGTATGTA 57.606 39.130 0.00 0.00 30.53 2.29
645 701 5.407502 TCACACATTTCAGTCCGTATGTAG 58.592 41.667 0.00 0.00 30.53 2.74
646 702 5.047590 TCACACATTTCAGTCCGTATGTAGT 60.048 40.000 0.00 0.00 30.53 2.73
647 703 5.288712 CACACATTTCAGTCCGTATGTAGTC 59.711 44.000 0.00 0.00 30.53 2.59
648 704 4.804139 CACATTTCAGTCCGTATGTAGTCC 59.196 45.833 0.00 0.00 30.53 3.85
649 705 4.464951 ACATTTCAGTCCGTATGTAGTCCA 59.535 41.667 0.00 0.00 29.93 4.02
650 706 5.128827 ACATTTCAGTCCGTATGTAGTCCAT 59.871 40.000 0.00 0.00 37.58 3.41
651 707 6.322969 ACATTTCAGTCCGTATGTAGTCCATA 59.677 38.462 0.00 0.00 34.86 2.74
652 708 6.971726 TTTCAGTCCGTATGTAGTCCATAT 57.028 37.500 0.00 0.00 38.29 1.78
653 709 6.971726 TTCAGTCCGTATGTAGTCCATATT 57.028 37.500 0.00 0.00 38.29 1.28
654 710 6.327279 TCAGTCCGTATGTAGTCCATATTG 57.673 41.667 0.00 0.00 38.29 1.90
655 711 6.066032 TCAGTCCGTATGTAGTCCATATTGA 58.934 40.000 0.00 0.00 38.29 2.57
656 712 6.548251 TCAGTCCGTATGTAGTCCATATTGAA 59.452 38.462 0.00 0.00 38.29 2.69
657 713 7.068962 TCAGTCCGTATGTAGTCCATATTGAAA 59.931 37.037 0.00 0.00 38.29 2.69
658 714 7.872993 CAGTCCGTATGTAGTCCATATTGAAAT 59.127 37.037 0.00 0.00 38.29 2.17
659 715 9.085645 AGTCCGTATGTAGTCCATATTGAAATA 57.914 33.333 0.00 0.00 38.29 1.40
660 716 9.871238 GTCCGTATGTAGTCCATATTGAAATAT 57.129 33.333 0.00 0.00 38.29 1.28
662 718 9.314321 CCGTATGTAGTCCATATTGAAATATCC 57.686 37.037 0.00 0.00 38.29 2.59
663 719 9.869757 CGTATGTAGTCCATATTGAAATATCCA 57.130 33.333 0.00 0.00 38.29 3.41
685 741 9.787532 ATCCAAAACATCTTATATTTGTGAACG 57.212 29.630 0.00 0.00 32.29 3.95
686 742 8.240682 TCCAAAACATCTTATATTTGTGAACGG 58.759 33.333 0.00 0.00 32.29 4.44
687 743 8.240682 CCAAAACATCTTATATTTGTGAACGGA 58.759 33.333 0.00 0.00 32.29 4.69
688 744 9.277565 CAAAACATCTTATATTTGTGAACGGAG 57.722 33.333 0.00 0.00 0.00 4.63
689 745 7.553881 AACATCTTATATTTGTGAACGGAGG 57.446 36.000 0.00 0.00 0.00 4.30
690 746 6.055588 ACATCTTATATTTGTGAACGGAGGG 58.944 40.000 0.00 0.00 0.00 4.30
691 747 5.943349 TCTTATATTTGTGAACGGAGGGA 57.057 39.130 0.00 0.00 0.00 4.20
692 748 5.914033 TCTTATATTTGTGAACGGAGGGAG 58.086 41.667 0.00 0.00 0.00 4.30
693 749 5.424252 TCTTATATTTGTGAACGGAGGGAGT 59.576 40.000 0.00 0.00 0.00 3.85
694 750 6.608405 TCTTATATTTGTGAACGGAGGGAGTA 59.392 38.462 0.00 0.00 0.00 2.59
695 751 5.888982 ATATTTGTGAACGGAGGGAGTAT 57.111 39.130 0.00 0.00 0.00 2.12
696 752 6.989155 ATATTTGTGAACGGAGGGAGTATA 57.011 37.500 0.00 0.00 0.00 1.47
697 753 4.460948 TTTGTGAACGGAGGGAGTATAC 57.539 45.455 0.00 0.00 0.00 1.47
698 754 3.377253 TGTGAACGGAGGGAGTATACT 57.623 47.619 4.68 4.68 0.00 2.12
699 755 3.021695 TGTGAACGGAGGGAGTATACTG 58.978 50.000 10.90 0.00 0.00 2.74
700 756 3.022406 GTGAACGGAGGGAGTATACTGT 58.978 50.000 10.90 0.00 0.00 3.55
701 757 4.202441 GTGAACGGAGGGAGTATACTGTA 58.798 47.826 10.90 0.00 0.00 2.74
702 758 4.641989 GTGAACGGAGGGAGTATACTGTAA 59.358 45.833 10.90 0.00 0.00 2.41
703 759 4.885907 TGAACGGAGGGAGTATACTGTAAG 59.114 45.833 10.90 0.00 42.29 2.34
704 760 4.785346 ACGGAGGGAGTATACTGTAAGA 57.215 45.455 10.90 0.00 37.43 2.10
705 761 5.121380 ACGGAGGGAGTATACTGTAAGAA 57.879 43.478 10.90 0.00 37.43 2.52
706 762 5.703310 ACGGAGGGAGTATACTGTAAGAAT 58.297 41.667 10.90 0.00 37.43 2.40
707 763 5.535406 ACGGAGGGAGTATACTGTAAGAATG 59.465 44.000 10.90 0.00 37.43 2.67
708 764 5.047943 CGGAGGGAGTATACTGTAAGAATGG 60.048 48.000 10.90 0.00 37.43 3.16
709 765 5.839606 GGAGGGAGTATACTGTAAGAATGGT 59.160 44.000 10.90 0.00 37.43 3.55
710 766 6.326843 GGAGGGAGTATACTGTAAGAATGGTT 59.673 42.308 10.90 0.00 37.43 3.67
711 767 7.508296 GGAGGGAGTATACTGTAAGAATGGTTA 59.492 40.741 10.90 0.00 37.43 2.85
712 768 8.480133 AGGGAGTATACTGTAAGAATGGTTAG 57.520 38.462 10.90 0.00 37.43 2.34
713 769 8.066247 AGGGAGTATACTGTAAGAATGGTTAGT 58.934 37.037 10.90 0.00 37.43 2.24
714 770 8.142551 GGGAGTATACTGTAAGAATGGTTAGTG 58.857 40.741 10.90 0.00 37.43 2.74
715 771 8.142551 GGAGTATACTGTAAGAATGGTTAGTGG 58.857 40.741 10.90 0.00 37.43 4.00
716 772 8.605325 AGTATACTGTAAGAATGGTTAGTGGT 57.395 34.615 4.10 0.00 37.43 4.16
717 773 9.705103 AGTATACTGTAAGAATGGTTAGTGGTA 57.295 33.333 4.10 0.00 37.43 3.25
722 778 9.582648 ACTGTAAGAATGGTTAGTGGTAAAATT 57.417 29.630 0.00 0.00 37.43 1.82
732 788 9.262358 TGGTTAGTGGTAAAATTAATGTTTTGC 57.738 29.630 0.00 0.00 34.31 3.68
733 789 9.262358 GGTTAGTGGTAAAATTAATGTTTTGCA 57.738 29.630 0.00 0.00 36.00 4.08
737 793 9.389755 AGTGGTAAAATTAATGTTTTGCAAACT 57.610 25.926 12.39 0.00 36.00 2.66
738 794 9.432077 GTGGTAAAATTAATGTTTTGCAAACTG 57.568 29.630 12.39 0.00 36.00 3.16
739 795 9.167311 TGGTAAAATTAATGTTTTGCAAACTGT 57.833 25.926 12.39 0.21 36.00 3.55
747 803 9.539825 TTAATGTTTTGCAAACTGTATTGATGT 57.460 25.926 12.39 0.00 31.84 3.06
748 804 7.642071 ATGTTTTGCAAACTGTATTGATGTC 57.358 32.000 12.39 0.00 31.84 3.06
749 805 5.982516 TGTTTTGCAAACTGTATTGATGTCC 59.017 36.000 12.39 0.00 31.84 4.02
750 806 5.781210 TTTGCAAACTGTATTGATGTCCA 57.219 34.783 8.05 0.00 31.84 4.02
751 807 5.781210 TTGCAAACTGTATTGATGTCCAA 57.219 34.783 0.00 0.00 39.41 3.53
752 808 5.781210 TGCAAACTGTATTGATGTCCAAA 57.219 34.783 6.82 0.00 38.43 3.28
753 809 6.154203 TGCAAACTGTATTGATGTCCAAAA 57.846 33.333 6.82 0.00 38.43 2.44
754 810 5.982516 TGCAAACTGTATTGATGTCCAAAAC 59.017 36.000 6.82 0.00 38.43 2.43
755 811 5.405269 GCAAACTGTATTGATGTCCAAAACC 59.595 40.000 6.82 0.00 38.43 3.27
756 812 6.511416 CAAACTGTATTGATGTCCAAAACCA 58.489 36.000 0.00 0.00 38.43 3.67
757 813 6.723298 AACTGTATTGATGTCCAAAACCAA 57.277 33.333 0.00 0.00 38.43 3.67
758 814 6.723298 ACTGTATTGATGTCCAAAACCAAA 57.277 33.333 0.00 0.00 38.43 3.28
759 815 7.118496 ACTGTATTGATGTCCAAAACCAAAA 57.882 32.000 0.00 0.00 38.43 2.44
760 816 6.983890 ACTGTATTGATGTCCAAAACCAAAAC 59.016 34.615 0.00 0.00 38.43 2.43
761 817 7.118496 TGTATTGATGTCCAAAACCAAAACT 57.882 32.000 0.00 0.00 38.43 2.66
762 818 7.560368 TGTATTGATGTCCAAAACCAAAACTT 58.440 30.769 0.00 0.00 38.43 2.66
763 819 8.043710 TGTATTGATGTCCAAAACCAAAACTTT 58.956 29.630 0.00 0.00 38.43 2.66
764 820 7.936496 ATTGATGTCCAAAACCAAAACTTTT 57.064 28.000 0.00 0.00 38.43 2.27
765 821 6.976636 TGATGTCCAAAACCAAAACTTTTC 57.023 33.333 0.00 0.00 0.00 2.29
766 822 6.706295 TGATGTCCAAAACCAAAACTTTTCT 58.294 32.000 0.00 0.00 0.00 2.52
767 823 7.841956 TGATGTCCAAAACCAAAACTTTTCTA 58.158 30.769 0.00 0.00 0.00 2.10
768 824 7.978975 TGATGTCCAAAACCAAAACTTTTCTAG 59.021 33.333 0.00 0.00 0.00 2.43
769 825 7.234661 TGTCCAAAACCAAAACTTTTCTAGT 57.765 32.000 0.00 0.00 39.32 2.57
771 827 7.600752 TGTCCAAAACCAAAACTTTTCTAGTTG 59.399 33.333 0.00 0.00 46.34 3.16
772 828 7.601130 GTCCAAAACCAAAACTTTTCTAGTTGT 59.399 33.333 0.00 0.00 46.34 3.32
773 829 8.804204 TCCAAAACCAAAACTTTTCTAGTTGTA 58.196 29.630 0.00 0.00 46.34 2.41
774 830 9.083080 CCAAAACCAAAACTTTTCTAGTTGTAG 57.917 33.333 0.00 0.00 46.34 2.74
775 831 9.083080 CAAAACCAAAACTTTTCTAGTTGTAGG 57.917 33.333 0.00 0.00 46.34 3.18
776 832 6.954487 ACCAAAACTTTTCTAGTTGTAGGG 57.046 37.500 0.00 0.00 46.34 3.53
777 833 5.831525 ACCAAAACTTTTCTAGTTGTAGGGG 59.168 40.000 0.00 0.00 46.34 4.79
778 834 5.243060 CCAAAACTTTTCTAGTTGTAGGGGG 59.757 44.000 0.00 0.00 46.34 5.40
779 835 3.715638 ACTTTTCTAGTTGTAGGGGGC 57.284 47.619 0.00 0.00 31.29 5.80
780 836 2.983898 ACTTTTCTAGTTGTAGGGGGCA 59.016 45.455 0.00 0.00 31.29 5.36
781 837 3.009143 ACTTTTCTAGTTGTAGGGGGCAG 59.991 47.826 0.00 0.00 31.29 4.85
782 838 2.634639 TTCTAGTTGTAGGGGGCAGA 57.365 50.000 0.00 0.00 0.00 4.26
783 839 2.634639 TCTAGTTGTAGGGGGCAGAA 57.365 50.000 0.00 0.00 0.00 3.02
784 840 2.467880 TCTAGTTGTAGGGGGCAGAAG 58.532 52.381 0.00 0.00 0.00 2.85
785 841 2.043939 TCTAGTTGTAGGGGGCAGAAGA 59.956 50.000 0.00 0.00 0.00 2.87
786 842 1.972588 AGTTGTAGGGGGCAGAAGAT 58.027 50.000 0.00 0.00 0.00 2.40
787 843 3.130734 AGTTGTAGGGGGCAGAAGATA 57.869 47.619 0.00 0.00 0.00 1.98
788 844 3.669949 AGTTGTAGGGGGCAGAAGATAT 58.330 45.455 0.00 0.00 0.00 1.63
789 845 3.392616 AGTTGTAGGGGGCAGAAGATATG 59.607 47.826 0.00 0.00 0.00 1.78
790 846 3.060479 TGTAGGGGGCAGAAGATATGT 57.940 47.619 0.00 0.00 0.00 2.29
791 847 2.705658 TGTAGGGGGCAGAAGATATGTG 59.294 50.000 0.00 0.00 0.00 3.21
800 856 5.914085 GCAGAAGATATGTGCGAGTTTAT 57.086 39.130 0.00 0.00 38.68 1.40
801 857 6.292389 GCAGAAGATATGTGCGAGTTTATT 57.708 37.500 0.00 0.00 38.68 1.40
802 858 6.132056 GCAGAAGATATGTGCGAGTTTATTG 58.868 40.000 0.00 0.00 38.68 1.90
803 859 6.018751 GCAGAAGATATGTGCGAGTTTATTGA 60.019 38.462 0.00 0.00 38.68 2.57
804 860 7.307632 GCAGAAGATATGTGCGAGTTTATTGAT 60.308 37.037 0.00 0.00 38.68 2.57
805 861 8.008279 CAGAAGATATGTGCGAGTTTATTGATG 58.992 37.037 0.00 0.00 0.00 3.07
806 862 7.712639 AGAAGATATGTGCGAGTTTATTGATGT 59.287 33.333 0.00 0.00 0.00 3.06
807 863 7.792374 AGATATGTGCGAGTTTATTGATGTT 57.208 32.000 0.00 0.00 0.00 2.71
808 864 8.213518 AGATATGTGCGAGTTTATTGATGTTT 57.786 30.769 0.00 0.00 0.00 2.83
809 865 8.677300 AGATATGTGCGAGTTTATTGATGTTTT 58.323 29.630 0.00 0.00 0.00 2.43
810 866 9.289303 GATATGTGCGAGTTTATTGATGTTTTT 57.711 29.630 0.00 0.00 0.00 1.94
811 867 6.984740 TGTGCGAGTTTATTGATGTTTTTC 57.015 33.333 0.00 0.00 0.00 2.29
812 868 5.918011 TGTGCGAGTTTATTGATGTTTTTCC 59.082 36.000 0.00 0.00 0.00 3.13
813 869 5.344933 GTGCGAGTTTATTGATGTTTTTCCC 59.655 40.000 0.00 0.00 0.00 3.97
814 870 4.862574 GCGAGTTTATTGATGTTTTTCCCC 59.137 41.667 0.00 0.00 0.00 4.81
815 871 5.407502 CGAGTTTATTGATGTTTTTCCCCC 58.592 41.667 0.00 0.00 0.00 5.40
816 872 5.185056 CGAGTTTATTGATGTTTTTCCCCCT 59.815 40.000 0.00 0.00 0.00 4.79
817 873 6.295067 CGAGTTTATTGATGTTTTTCCCCCTT 60.295 38.462 0.00 0.00 0.00 3.95
818 874 7.004555 AGTTTATTGATGTTTTTCCCCCTTC 57.995 36.000 0.00 0.00 0.00 3.46
819 875 5.652994 TTATTGATGTTTTTCCCCCTTCG 57.347 39.130 0.00 0.00 0.00 3.79
820 876 2.668144 TGATGTTTTTCCCCCTTCGT 57.332 45.000 0.00 0.00 0.00 3.85
821 877 2.952116 TGATGTTTTTCCCCCTTCGTT 58.048 42.857 0.00 0.00 0.00 3.85
822 878 3.301274 TGATGTTTTTCCCCCTTCGTTT 58.699 40.909 0.00 0.00 0.00 3.60
823 879 3.068873 TGATGTTTTTCCCCCTTCGTTTG 59.931 43.478 0.00 0.00 0.00 2.93
824 880 2.736347 TGTTTTTCCCCCTTCGTTTGA 58.264 42.857 0.00 0.00 0.00 2.69
825 881 2.427812 TGTTTTTCCCCCTTCGTTTGAC 59.572 45.455 0.00 0.00 0.00 3.18
826 882 1.694844 TTTTCCCCCTTCGTTTGACC 58.305 50.000 0.00 0.00 0.00 4.02
827 883 0.848053 TTTCCCCCTTCGTTTGACCT 59.152 50.000 0.00 0.00 0.00 3.85
828 884 0.848053 TTCCCCCTTCGTTTGACCTT 59.152 50.000 0.00 0.00 0.00 3.50
829 885 0.848053 TCCCCCTTCGTTTGACCTTT 59.152 50.000 0.00 0.00 0.00 3.11
830 886 1.215924 TCCCCCTTCGTTTGACCTTTT 59.784 47.619 0.00 0.00 0.00 2.27
831 887 2.442502 TCCCCCTTCGTTTGACCTTTTA 59.557 45.455 0.00 0.00 0.00 1.52
832 888 3.074836 TCCCCCTTCGTTTGACCTTTTAT 59.925 43.478 0.00 0.00 0.00 1.40
833 889 3.442625 CCCCCTTCGTTTGACCTTTTATC 59.557 47.826 0.00 0.00 0.00 1.75
834 890 4.076394 CCCCTTCGTTTGACCTTTTATCA 58.924 43.478 0.00 0.00 0.00 2.15
835 891 4.156008 CCCCTTCGTTTGACCTTTTATCAG 59.844 45.833 0.00 0.00 0.00 2.90
836 892 4.379499 CCCTTCGTTTGACCTTTTATCAGC 60.379 45.833 0.00 0.00 0.00 4.26
837 893 4.215399 CCTTCGTTTGACCTTTTATCAGCA 59.785 41.667 0.00 0.00 0.00 4.41
838 894 4.742438 TCGTTTGACCTTTTATCAGCAC 57.258 40.909 0.00 0.00 0.00 4.40
839 895 4.130857 TCGTTTGACCTTTTATCAGCACA 58.869 39.130 0.00 0.00 0.00 4.57
840 896 4.213270 TCGTTTGACCTTTTATCAGCACAG 59.787 41.667 0.00 0.00 0.00 3.66
841 897 4.229876 GTTTGACCTTTTATCAGCACAGC 58.770 43.478 0.00 0.00 0.00 4.40
842 898 2.436417 TGACCTTTTATCAGCACAGCC 58.564 47.619 0.00 0.00 0.00 4.85
843 899 2.224744 TGACCTTTTATCAGCACAGCCA 60.225 45.455 0.00 0.00 0.00 4.75
844 900 3.019564 GACCTTTTATCAGCACAGCCAT 58.980 45.455 0.00 0.00 0.00 4.40
845 901 3.434309 ACCTTTTATCAGCACAGCCATT 58.566 40.909 0.00 0.00 0.00 3.16
846 902 3.834231 ACCTTTTATCAGCACAGCCATTT 59.166 39.130 0.00 0.00 0.00 2.32
847 903 4.082026 ACCTTTTATCAGCACAGCCATTTC 60.082 41.667 0.00 0.00 0.00 2.17
848 904 3.763097 TTTATCAGCACAGCCATTTCG 57.237 42.857 0.00 0.00 0.00 3.46
863 919 0.884704 TTTCGCCTGTCCTTCACTGC 60.885 55.000 0.00 0.00 0.00 4.40
923 979 2.211619 TTTGTATGCTTGCAGGCCGC 62.212 55.000 19.11 11.92 42.89 6.53
937 4449 3.733337 CAGGCCGCTCTTCATATAAACT 58.267 45.455 0.00 0.00 0.00 2.66
943 4455 7.038941 AGGCCGCTCTTCATATAAACTAAGTAT 60.039 37.037 0.00 0.00 0.00 2.12
960 4472 7.514721 ACTAAGTATTCACCAAGAAAAGGACA 58.485 34.615 0.00 0.00 40.22 4.02
978 4491 8.706322 AAAGGACATATTACTTGGTTTGAAGT 57.294 30.769 0.00 0.00 39.54 3.01
980 4493 7.458397 AGGACATATTACTTGGTTTGAAGTGA 58.542 34.615 0.00 0.00 36.80 3.41
984 4497 9.295825 ACATATTACTTGGTTTGAAGTGATCAA 57.704 29.630 0.00 0.00 46.22 2.57
998 4511 7.405292 TGAAGTGATCAATAAAGAACCATCCT 58.595 34.615 0.00 0.00 34.30 3.24
1038 4563 4.440663 GCCGACTACTTCCGTATAGGTTTT 60.441 45.833 0.00 0.00 41.99 2.43
1128 4653 3.348119 CTGTCTCCTACTCTGTGCTGTA 58.652 50.000 0.00 0.00 0.00 2.74
1241 4769 0.251297 TGGTCATTGGCCAACTCCAG 60.251 55.000 23.27 8.79 37.44 3.86
1371 4899 1.524008 CGGCTTTCCCCAACCTGAAC 61.524 60.000 0.00 0.00 0.00 3.18
1602 5130 1.874562 CAAGCTTGACGAAGATTGCG 58.125 50.000 22.31 0.00 45.76 4.85
1636 5164 3.652057 ATTTGACTGGATCAATCCCGT 57.348 42.857 5.86 5.86 46.80 5.28
1754 5289 4.794439 TCGCATGGACCTGACGCG 62.794 66.667 3.53 3.53 46.92 6.01
1786 5321 2.190398 TGGCCAGATACCAGGTACAT 57.810 50.000 0.00 0.00 32.06 2.29
1809 5344 7.390718 ACATTCTCTCGTTTGGTAAAGCTAAAT 59.609 33.333 0.00 0.00 30.35 1.40
1853 5388 3.518998 CGGAGGCGACGTCATCCT 61.519 66.667 22.01 22.01 0.00 3.24
1860 5395 0.100682 GCGACGTCATCCTTGAGCTA 59.899 55.000 17.16 0.00 30.85 3.32
2100 5635 1.048601 AGCCTCCAGAACAACTTCGA 58.951 50.000 0.00 0.00 0.00 3.71
2205 5740 7.127955 AGGTTATCACTTCTGGACCTATCAAAT 59.872 37.037 0.00 0.00 35.84 2.32
2283 5818 4.676109 TGGAATTCATGGATTTGTCCAGT 58.324 39.130 7.93 0.00 43.86 4.00
2402 5937 6.920210 CCTTTGGTTCTTAAGAAAAGCAAGAG 59.080 38.462 19.30 16.70 42.00 2.85
2853 7827 3.310954 ACCATCTCTCAGGTGGTATTCCT 60.311 47.826 6.68 0.00 44.08 3.36
3199 8174 1.021968 GTTTTGGCTATACTGGGGCG 58.978 55.000 0.00 0.00 0.00 6.13
3214 8192 1.065600 GGCGTGCTCTTTTGCAACA 59.934 52.632 0.00 0.00 45.12 3.33
3215 8193 1.208642 GGCGTGCTCTTTTGCAACAC 61.209 55.000 0.00 2.52 45.12 3.32
3225 8203 1.960417 TTTGCAACACGACATGGAGA 58.040 45.000 0.00 0.00 0.00 3.71
3246 8224 7.605309 TGGAGATGTGCATTCTATCAATATGTC 59.395 37.037 2.43 0.00 0.00 3.06
3271 8249 5.531634 ACAACATGCAAGACAAGGTAATTG 58.468 37.500 0.00 0.00 45.01 2.32
3316 8294 2.019984 CCTCCAAGCTAAGGCATGAAC 58.980 52.381 0.00 0.00 39.21 3.18
3335 8313 1.078709 CGAGGACGTGCATCACAAAT 58.921 50.000 10.52 0.00 33.40 2.32
3373 8351 8.691797 GTCATTGCCTGTTATATTTTCCCTTAA 58.308 33.333 0.00 0.00 0.00 1.85
3436 8414 2.294233 TGGCACATCTCAAGTTGAAAGC 59.706 45.455 7.06 6.58 0.00 3.51
3505 8484 6.363357 CAGTTGCACATTTCTTAACCTAAAGC 59.637 38.462 0.00 0.00 0.00 3.51
3548 8527 2.752903 GCAACTACCTGTTACCATTGGG 59.247 50.000 7.78 0.00 37.07 4.12
3594 8573 8.674263 TTGGATTTACAAATTGTTGCAGAAAT 57.326 26.923 3.17 3.76 38.39 2.17
3628 8608 6.157994 TGTCTGTAATATTTGCCCCTTACTCT 59.842 38.462 0.00 0.00 0.00 3.24
3760 8740 1.639280 ACACAAAAGCTTGTTTGCGG 58.361 45.000 10.19 6.29 43.45 5.69
3761 8741 0.301388 CACAAAAGCTTGTTTGCGGC 59.699 50.000 10.19 0.00 43.45 6.53
3778 8758 3.123050 GCGGCAGTGAAGAAATTTGTTT 58.877 40.909 1.67 0.00 0.00 2.83
3782 8762 5.853282 CGGCAGTGAAGAAATTTGTTTAGAG 59.147 40.000 1.67 0.00 0.00 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
199 246 5.062683 ACATCACAAATGTTCTTCGAGATCG 59.937 40.000 0.00 0.00 41.45 3.69
279 327 9.521841 TGGGTGTTAACAATACTTCATAATTCA 57.478 29.630 10.51 0.00 0.00 2.57
282 330 9.693739 TCATGGGTGTTAACAATACTTCATAAT 57.306 29.630 10.51 0.00 0.00 1.28
284 332 8.952278 GTTCATGGGTGTTAACAATACTTCATA 58.048 33.333 10.51 0.00 0.00 2.15
285 333 7.669722 AGTTCATGGGTGTTAACAATACTTCAT 59.330 33.333 10.51 5.51 0.00 2.57
286 334 7.001674 AGTTCATGGGTGTTAACAATACTTCA 58.998 34.615 10.51 3.44 0.00 3.02
287 335 7.040686 ACAGTTCATGGGTGTTAACAATACTTC 60.041 37.037 10.51 0.00 0.00 3.01
288 336 6.775629 ACAGTTCATGGGTGTTAACAATACTT 59.224 34.615 10.51 0.00 0.00 2.24
289 337 6.303839 ACAGTTCATGGGTGTTAACAATACT 58.696 36.000 10.51 0.00 0.00 2.12
290 338 6.569179 ACAGTTCATGGGTGTTAACAATAC 57.431 37.500 10.51 4.26 0.00 1.89
291 339 7.681679 TCTACAGTTCATGGGTGTTAACAATA 58.318 34.615 10.51 0.00 0.00 1.90
292 340 6.539173 TCTACAGTTCATGGGTGTTAACAAT 58.461 36.000 10.51 0.00 0.00 2.71
293 341 5.931294 TCTACAGTTCATGGGTGTTAACAA 58.069 37.500 10.51 0.00 0.00 2.83
294 342 5.554437 TCTACAGTTCATGGGTGTTAACA 57.446 39.130 3.59 3.59 0.00 2.41
295 343 7.491696 GTCTATCTACAGTTCATGGGTGTTAAC 59.508 40.741 0.00 0.00 0.00 2.01
296 344 7.364408 GGTCTATCTACAGTTCATGGGTGTTAA 60.364 40.741 0.00 0.00 0.00 2.01
297 345 6.097839 GGTCTATCTACAGTTCATGGGTGTTA 59.902 42.308 0.00 0.00 0.00 2.41
298 346 5.104900 GGTCTATCTACAGTTCATGGGTGTT 60.105 44.000 0.00 0.00 0.00 3.32
299 347 4.406003 GGTCTATCTACAGTTCATGGGTGT 59.594 45.833 0.00 0.00 0.00 4.16
300 348 4.202264 GGGTCTATCTACAGTTCATGGGTG 60.202 50.000 0.00 0.00 0.00 4.61
301 349 3.967987 GGGTCTATCTACAGTTCATGGGT 59.032 47.826 0.00 0.00 0.00 4.51
302 350 4.227197 AGGGTCTATCTACAGTTCATGGG 58.773 47.826 0.00 0.00 0.00 4.00
303 351 6.495181 ACATAGGGTCTATCTACAGTTCATGG 59.505 42.308 0.00 0.00 0.00 3.66
304 352 7.231519 TCACATAGGGTCTATCTACAGTTCATG 59.768 40.741 0.00 0.00 0.00 3.07
328 376 5.181009 CAACTCTCAGTTAATGGCATCTCA 58.819 41.667 0.00 0.00 36.03 3.27
395 443 1.475751 GGCCCTATGACAGACCATGTG 60.476 57.143 0.00 0.00 44.17 3.21
476 524 6.064060 AGAAAATTGACACATGACTCTCCAA 58.936 36.000 0.00 0.00 0.00 3.53
511 559 5.555966 ACCCAATTTGTTTTGAACACAAGT 58.444 33.333 0.00 0.00 41.97 3.16
512 560 6.493449 AACCCAATTTGTTTTGAACACAAG 57.507 33.333 0.00 0.00 41.97 3.16
514 562 6.246420 CAAACCCAATTTGTTTTGAACACA 57.754 33.333 12.26 0.00 42.46 3.72
530 586 4.018233 ACGGAGGGAATATTTACAAACCCA 60.018 41.667 9.64 0.00 39.73 4.51
531 587 4.529897 ACGGAGGGAATATTTACAAACCC 58.470 43.478 0.00 0.00 37.79 4.11
532 588 5.648960 TGAACGGAGGGAATATTTACAAACC 59.351 40.000 0.00 0.00 0.00 3.27
533 589 6.149807 TGTGAACGGAGGGAATATTTACAAAC 59.850 38.462 0.00 0.00 0.00 2.93
534 590 6.239396 TGTGAACGGAGGGAATATTTACAAA 58.761 36.000 0.00 0.00 0.00 2.83
535 591 5.806818 TGTGAACGGAGGGAATATTTACAA 58.193 37.500 0.00 0.00 0.00 2.41
536 592 5.423704 TGTGAACGGAGGGAATATTTACA 57.576 39.130 0.00 0.00 0.00 2.41
537 593 6.746745 TTTGTGAACGGAGGGAATATTTAC 57.253 37.500 0.00 0.00 0.00 2.01
538 594 8.047911 TGTATTTGTGAACGGAGGGAATATTTA 58.952 33.333 0.00 0.00 0.00 1.40
539 595 6.887545 TGTATTTGTGAACGGAGGGAATATTT 59.112 34.615 0.00 0.00 0.00 1.40
540 596 6.419791 TGTATTTGTGAACGGAGGGAATATT 58.580 36.000 0.00 0.00 0.00 1.28
541 597 5.996644 TGTATTTGTGAACGGAGGGAATAT 58.003 37.500 0.00 0.00 0.00 1.28
542 598 5.423704 TGTATTTGTGAACGGAGGGAATA 57.576 39.130 0.00 0.00 0.00 1.75
543 599 4.295141 TGTATTTGTGAACGGAGGGAAT 57.705 40.909 0.00 0.00 0.00 3.01
544 600 3.773418 TGTATTTGTGAACGGAGGGAA 57.227 42.857 0.00 0.00 0.00 3.97
545 601 3.325425 TCTTGTATTTGTGAACGGAGGGA 59.675 43.478 0.00 0.00 0.00 4.20
546 602 3.670625 TCTTGTATTTGTGAACGGAGGG 58.329 45.455 0.00 0.00 0.00 4.30
547 603 4.695455 ACATCTTGTATTTGTGAACGGAGG 59.305 41.667 0.00 0.00 0.00 4.30
548 604 5.862924 ACATCTTGTATTTGTGAACGGAG 57.137 39.130 0.00 0.00 0.00 4.63
549 605 5.995282 AGAACATCTTGTATTTGTGAACGGA 59.005 36.000 0.00 0.00 0.00 4.69
550 606 6.241207 AGAACATCTTGTATTTGTGAACGG 57.759 37.500 0.00 0.00 0.00 4.44
551 607 8.495949 AGTTAGAACATCTTGTATTTGTGAACG 58.504 33.333 0.00 0.00 0.00 3.95
578 634 7.230108 TGTGTATATAAACCCGGTTCACAAAAA 59.770 33.333 14.65 0.00 31.85 1.94
579 635 6.713903 TGTGTATATAAACCCGGTTCACAAAA 59.286 34.615 14.65 0.00 31.85 2.44
580 636 6.149142 GTGTGTATATAAACCCGGTTCACAAA 59.851 38.462 17.34 5.29 35.59 2.83
581 637 5.642919 GTGTGTATATAAACCCGGTTCACAA 59.357 40.000 17.34 4.61 35.59 3.33
582 638 5.177326 GTGTGTATATAAACCCGGTTCACA 58.823 41.667 13.52 13.52 0.00 3.58
583 639 4.268405 CGTGTGTATATAAACCCGGTTCAC 59.732 45.833 2.46 6.91 0.00 3.18
584 640 4.081752 ACGTGTGTATATAAACCCGGTTCA 60.082 41.667 11.84 0.00 0.00 3.18
585 641 4.432712 ACGTGTGTATATAAACCCGGTTC 58.567 43.478 11.84 0.00 0.00 3.62
586 642 4.470334 ACGTGTGTATATAAACCCGGTT 57.530 40.909 11.84 0.00 0.00 4.44
587 643 4.470334 AACGTGTGTATATAAACCCGGT 57.530 40.909 11.84 2.94 0.00 5.28
588 644 5.799681 AAAACGTGTGTATATAAACCCGG 57.200 39.130 11.84 0.00 0.00 5.73
589 645 7.063308 ACACTAAAACGTGTGTATATAAACCCG 59.937 37.037 7.55 6.40 45.74 5.28
590 646 8.255394 ACACTAAAACGTGTGTATATAAACCC 57.745 34.615 7.55 0.00 45.74 4.11
603 659 5.147865 TGTGAACAAACACACTAAAACGTG 58.852 37.500 0.00 0.00 44.29 4.49
604 660 5.359716 TGTGAACAAACACACTAAAACGT 57.640 34.783 0.00 0.00 44.29 3.99
615 671 4.438065 CGGACTGAAATGTGTGAACAAACA 60.438 41.667 0.14 0.14 0.00 2.83
616 672 4.035017 CGGACTGAAATGTGTGAACAAAC 58.965 43.478 0.00 0.00 0.00 2.93
617 673 3.692101 ACGGACTGAAATGTGTGAACAAA 59.308 39.130 0.00 0.00 0.00 2.83
618 674 3.275143 ACGGACTGAAATGTGTGAACAA 58.725 40.909 0.00 0.00 0.00 2.83
619 675 2.912771 ACGGACTGAAATGTGTGAACA 58.087 42.857 0.00 0.00 0.00 3.18
620 676 4.451096 ACATACGGACTGAAATGTGTGAAC 59.549 41.667 6.32 0.00 31.56 3.18
621 677 4.637276 ACATACGGACTGAAATGTGTGAA 58.363 39.130 6.32 0.00 31.56 3.18
622 678 4.265904 ACATACGGACTGAAATGTGTGA 57.734 40.909 6.32 0.00 31.56 3.58
623 679 5.168569 ACTACATACGGACTGAAATGTGTG 58.831 41.667 13.75 10.18 34.54 3.82
624 680 5.401531 ACTACATACGGACTGAAATGTGT 57.598 39.130 13.75 8.99 34.54 3.72
625 681 4.804139 GGACTACATACGGACTGAAATGTG 59.196 45.833 13.75 8.57 34.54 3.21
626 682 4.464951 TGGACTACATACGGACTGAAATGT 59.535 41.667 10.46 10.46 36.56 2.71
627 683 5.006153 TGGACTACATACGGACTGAAATG 57.994 43.478 0.00 0.00 0.00 2.32
628 684 5.871396 ATGGACTACATACGGACTGAAAT 57.129 39.130 0.00 0.00 38.26 2.17
629 685 6.971726 ATATGGACTACATACGGACTGAAA 57.028 37.500 0.00 0.00 44.41 2.69
630 686 6.548251 TCAATATGGACTACATACGGACTGAA 59.452 38.462 0.00 0.00 44.41 3.02
631 687 6.066032 TCAATATGGACTACATACGGACTGA 58.934 40.000 0.00 0.00 44.41 3.41
632 688 6.327279 TCAATATGGACTACATACGGACTG 57.673 41.667 0.00 0.00 44.41 3.51
633 689 6.971726 TTCAATATGGACTACATACGGACT 57.028 37.500 0.00 0.00 44.41 3.85
634 690 9.871238 ATATTTCAATATGGACTACATACGGAC 57.129 33.333 0.00 0.00 44.41 4.79
636 692 9.314321 GGATATTTCAATATGGACTACATACGG 57.686 37.037 0.00 0.00 44.41 4.02
637 693 9.869757 TGGATATTTCAATATGGACTACATACG 57.130 33.333 0.00 0.00 44.41 3.06
659 715 9.787532 CGTTCACAAATATAAGATGTTTTGGAT 57.212 29.630 0.00 0.00 34.23 3.41
660 716 8.240682 CCGTTCACAAATATAAGATGTTTTGGA 58.759 33.333 0.00 0.00 34.23 3.53
661 717 8.240682 TCCGTTCACAAATATAAGATGTTTTGG 58.759 33.333 0.00 0.00 34.23 3.28
662 718 9.277565 CTCCGTTCACAAATATAAGATGTTTTG 57.722 33.333 0.00 0.00 35.66 2.44
663 719 8.458843 CCTCCGTTCACAAATATAAGATGTTTT 58.541 33.333 0.00 0.00 0.00 2.43
664 720 7.067008 CCCTCCGTTCACAAATATAAGATGTTT 59.933 37.037 0.00 0.00 0.00 2.83
665 721 6.542370 CCCTCCGTTCACAAATATAAGATGTT 59.458 38.462 0.00 0.00 0.00 2.71
666 722 6.055588 CCCTCCGTTCACAAATATAAGATGT 58.944 40.000 0.00 0.00 0.00 3.06
667 723 6.288294 TCCCTCCGTTCACAAATATAAGATG 58.712 40.000 0.00 0.00 0.00 2.90
668 724 6.099845 ACTCCCTCCGTTCACAAATATAAGAT 59.900 38.462 0.00 0.00 0.00 2.40
669 725 5.424252 ACTCCCTCCGTTCACAAATATAAGA 59.576 40.000 0.00 0.00 0.00 2.10
670 726 5.671493 ACTCCCTCCGTTCACAAATATAAG 58.329 41.667 0.00 0.00 0.00 1.73
671 727 5.687166 ACTCCCTCCGTTCACAAATATAA 57.313 39.130 0.00 0.00 0.00 0.98
672 728 6.989155 ATACTCCCTCCGTTCACAAATATA 57.011 37.500 0.00 0.00 0.00 0.86
673 729 5.888982 ATACTCCCTCCGTTCACAAATAT 57.111 39.130 0.00 0.00 0.00 1.28
674 730 5.895534 AGTATACTCCCTCCGTTCACAAATA 59.104 40.000 0.00 0.00 0.00 1.40
675 731 4.715297 AGTATACTCCCTCCGTTCACAAAT 59.285 41.667 0.00 0.00 0.00 2.32
676 732 4.081862 CAGTATACTCCCTCCGTTCACAAA 60.082 45.833 1.26 0.00 0.00 2.83
677 733 3.446161 CAGTATACTCCCTCCGTTCACAA 59.554 47.826 1.26 0.00 0.00 3.33
678 734 3.021695 CAGTATACTCCCTCCGTTCACA 58.978 50.000 1.26 0.00 0.00 3.58
679 735 3.022406 ACAGTATACTCCCTCCGTTCAC 58.978 50.000 1.26 0.00 0.00 3.18
680 736 3.377253 ACAGTATACTCCCTCCGTTCA 57.623 47.619 1.26 0.00 0.00 3.18
681 737 5.128919 TCTTACAGTATACTCCCTCCGTTC 58.871 45.833 1.26 0.00 0.00 3.95
682 738 5.121380 TCTTACAGTATACTCCCTCCGTT 57.879 43.478 1.26 0.00 0.00 4.44
683 739 4.785346 TCTTACAGTATACTCCCTCCGT 57.215 45.455 1.26 0.00 0.00 4.69
684 740 5.047943 CCATTCTTACAGTATACTCCCTCCG 60.048 48.000 1.26 0.00 0.00 4.63
685 741 5.839606 ACCATTCTTACAGTATACTCCCTCC 59.160 44.000 1.26 0.00 0.00 4.30
686 742 6.980416 ACCATTCTTACAGTATACTCCCTC 57.020 41.667 1.26 0.00 0.00 4.30
687 743 8.066247 ACTAACCATTCTTACAGTATACTCCCT 58.934 37.037 1.26 0.00 0.00 4.20
688 744 8.142551 CACTAACCATTCTTACAGTATACTCCC 58.857 40.741 1.26 0.00 0.00 4.30
689 745 8.142551 CCACTAACCATTCTTACAGTATACTCC 58.857 40.741 1.26 0.00 0.00 3.85
690 746 8.693625 ACCACTAACCATTCTTACAGTATACTC 58.306 37.037 1.26 0.00 0.00 2.59
691 747 8.605325 ACCACTAACCATTCTTACAGTATACT 57.395 34.615 0.00 0.00 0.00 2.12
696 752 9.582648 AATTTTACCACTAACCATTCTTACAGT 57.417 29.630 0.00 0.00 0.00 3.55
706 762 9.262358 GCAAAACATTAATTTTACCACTAACCA 57.738 29.630 0.00 0.00 30.57 3.67
707 763 9.262358 TGCAAAACATTAATTTTACCACTAACC 57.738 29.630 0.00 0.00 30.57 2.85
711 767 9.389755 AGTTTGCAAAACATTAATTTTACCACT 57.610 25.926 14.67 0.00 30.57 4.00
712 768 9.432077 CAGTTTGCAAAACATTAATTTTACCAC 57.568 29.630 14.67 0.00 30.57 4.16
713 769 9.167311 ACAGTTTGCAAAACATTAATTTTACCA 57.833 25.926 14.67 0.00 30.57 3.25
721 777 9.539825 ACATCAATACAGTTTGCAAAACATTAA 57.460 25.926 14.67 0.00 0.00 1.40
722 778 9.190858 GACATCAATACAGTTTGCAAAACATTA 57.809 29.630 14.67 3.63 0.00 1.90
723 779 7.171337 GGACATCAATACAGTTTGCAAAACATT 59.829 33.333 14.67 8.03 0.00 2.71
724 780 6.646240 GGACATCAATACAGTTTGCAAAACAT 59.354 34.615 14.67 4.53 0.00 2.71
725 781 5.982516 GGACATCAATACAGTTTGCAAAACA 59.017 36.000 14.67 0.00 0.00 2.83
726 782 5.982516 TGGACATCAATACAGTTTGCAAAAC 59.017 36.000 14.67 8.45 0.00 2.43
727 783 6.154203 TGGACATCAATACAGTTTGCAAAA 57.846 33.333 14.67 0.00 0.00 2.44
728 784 5.781210 TGGACATCAATACAGTTTGCAAA 57.219 34.783 8.05 8.05 0.00 3.68
729 785 5.781210 TTGGACATCAATACAGTTTGCAA 57.219 34.783 0.00 0.00 0.00 4.08
730 786 5.781210 TTTGGACATCAATACAGTTTGCA 57.219 34.783 0.00 0.00 34.98 4.08
731 787 5.405269 GGTTTTGGACATCAATACAGTTTGC 59.595 40.000 0.00 0.00 38.50 3.68
732 788 6.511416 TGGTTTTGGACATCAATACAGTTTG 58.489 36.000 0.00 0.00 38.50 2.93
733 789 6.723298 TGGTTTTGGACATCAATACAGTTT 57.277 33.333 0.00 0.00 38.50 2.66
734 790 6.723298 TTGGTTTTGGACATCAATACAGTT 57.277 33.333 0.00 0.00 38.50 3.16
735 791 6.723298 TTTGGTTTTGGACATCAATACAGT 57.277 33.333 0.00 0.00 38.50 3.55
736 792 7.209475 AGTTTTGGTTTTGGACATCAATACAG 58.791 34.615 0.00 0.00 38.50 2.74
737 793 7.118496 AGTTTTGGTTTTGGACATCAATACA 57.882 32.000 0.00 0.00 38.50 2.29
738 794 8.432110 AAAGTTTTGGTTTTGGACATCAATAC 57.568 30.769 0.00 0.00 36.84 1.89
739 795 9.103861 GAAAAGTTTTGGTTTTGGACATCAATA 57.896 29.630 5.36 0.00 34.98 1.90
740 796 7.828717 AGAAAAGTTTTGGTTTTGGACATCAAT 59.171 29.630 5.36 0.00 34.98 2.57
741 797 7.164803 AGAAAAGTTTTGGTTTTGGACATCAA 58.835 30.769 5.36 0.00 0.00 2.57
742 798 6.706295 AGAAAAGTTTTGGTTTTGGACATCA 58.294 32.000 5.36 0.00 0.00 3.07
743 799 7.979537 ACTAGAAAAGTTTTGGTTTTGGACATC 59.020 33.333 5.36 0.00 33.35 3.06
744 800 7.847096 ACTAGAAAAGTTTTGGTTTTGGACAT 58.153 30.769 5.36 0.00 33.35 3.06
745 801 7.234661 ACTAGAAAAGTTTTGGTTTTGGACA 57.765 32.000 5.36 0.00 33.35 4.02
746 802 7.601130 ACAACTAGAAAAGTTTTGGTTTTGGAC 59.399 33.333 5.36 0.00 46.61 4.02
747 803 7.672240 ACAACTAGAAAAGTTTTGGTTTTGGA 58.328 30.769 5.36 0.00 46.61 3.53
748 804 7.899178 ACAACTAGAAAAGTTTTGGTTTTGG 57.101 32.000 5.36 0.72 46.61 3.28
749 805 9.083080 CCTACAACTAGAAAAGTTTTGGTTTTG 57.917 33.333 5.36 6.68 46.61 2.44
750 806 8.255206 CCCTACAACTAGAAAAGTTTTGGTTTT 58.745 33.333 5.36 4.46 46.61 2.43
751 807 7.147794 CCCCTACAACTAGAAAAGTTTTGGTTT 60.148 37.037 5.36 3.26 46.61 3.27
752 808 6.322969 CCCCTACAACTAGAAAAGTTTTGGTT 59.677 38.462 5.36 5.51 46.61 3.67
753 809 5.831525 CCCCTACAACTAGAAAAGTTTTGGT 59.168 40.000 5.36 0.00 46.61 3.67
754 810 5.243060 CCCCCTACAACTAGAAAAGTTTTGG 59.757 44.000 5.36 0.00 46.61 3.28
755 811 5.278808 GCCCCCTACAACTAGAAAAGTTTTG 60.279 44.000 5.36 0.00 46.61 2.44
756 812 4.831155 GCCCCCTACAACTAGAAAAGTTTT 59.169 41.667 0.00 0.00 46.61 2.43
757 813 4.141111 TGCCCCCTACAACTAGAAAAGTTT 60.141 41.667 0.00 0.00 46.61 2.66
759 815 2.983898 TGCCCCCTACAACTAGAAAAGT 59.016 45.455 0.00 0.00 41.49 2.66
760 816 3.263425 TCTGCCCCCTACAACTAGAAAAG 59.737 47.826 0.00 0.00 0.00 2.27
761 817 3.253220 TCTGCCCCCTACAACTAGAAAA 58.747 45.455 0.00 0.00 0.00 2.29
762 818 2.910544 TCTGCCCCCTACAACTAGAAA 58.089 47.619 0.00 0.00 0.00 2.52
763 819 2.634639 TCTGCCCCCTACAACTAGAA 57.365 50.000 0.00 0.00 0.00 2.10
764 820 2.043939 TCTTCTGCCCCCTACAACTAGA 59.956 50.000 0.00 0.00 0.00 2.43
765 821 2.467880 TCTTCTGCCCCCTACAACTAG 58.532 52.381 0.00 0.00 0.00 2.57
766 822 2.634639 TCTTCTGCCCCCTACAACTA 57.365 50.000 0.00 0.00 0.00 2.24
767 823 1.972588 ATCTTCTGCCCCCTACAACT 58.027 50.000 0.00 0.00 0.00 3.16
768 824 3.136626 ACATATCTTCTGCCCCCTACAAC 59.863 47.826 0.00 0.00 0.00 3.32
769 825 3.136443 CACATATCTTCTGCCCCCTACAA 59.864 47.826 0.00 0.00 0.00 2.41
770 826 2.705658 CACATATCTTCTGCCCCCTACA 59.294 50.000 0.00 0.00 0.00 2.74
771 827 2.551071 GCACATATCTTCTGCCCCCTAC 60.551 54.545 0.00 0.00 0.00 3.18
772 828 1.699634 GCACATATCTTCTGCCCCCTA 59.300 52.381 0.00 0.00 0.00 3.53
773 829 0.475906 GCACATATCTTCTGCCCCCT 59.524 55.000 0.00 0.00 0.00 4.79
774 830 0.886490 CGCACATATCTTCTGCCCCC 60.886 60.000 0.00 0.00 0.00 5.40
775 831 0.106708 TCGCACATATCTTCTGCCCC 59.893 55.000 0.00 0.00 0.00 5.80
776 832 1.202580 ACTCGCACATATCTTCTGCCC 60.203 52.381 0.00 0.00 0.00 5.36
777 833 2.231215 ACTCGCACATATCTTCTGCC 57.769 50.000 0.00 0.00 0.00 4.85
778 834 5.914085 ATAAACTCGCACATATCTTCTGC 57.086 39.130 0.00 0.00 0.00 4.26
779 835 7.468922 TCAATAAACTCGCACATATCTTCTG 57.531 36.000 0.00 0.00 0.00 3.02
780 836 7.712639 ACATCAATAAACTCGCACATATCTTCT 59.287 33.333 0.00 0.00 0.00 2.85
781 837 7.855545 ACATCAATAAACTCGCACATATCTTC 58.144 34.615 0.00 0.00 0.00 2.87
782 838 7.792374 ACATCAATAAACTCGCACATATCTT 57.208 32.000 0.00 0.00 0.00 2.40
783 839 7.792374 AACATCAATAAACTCGCACATATCT 57.208 32.000 0.00 0.00 0.00 1.98
784 840 8.841444 AAAACATCAATAAACTCGCACATATC 57.159 30.769 0.00 0.00 0.00 1.63
785 841 9.289303 GAAAAACATCAATAAACTCGCACATAT 57.711 29.630 0.00 0.00 0.00 1.78
786 842 7.753132 GGAAAAACATCAATAAACTCGCACATA 59.247 33.333 0.00 0.00 0.00 2.29
787 843 6.586082 GGAAAAACATCAATAAACTCGCACAT 59.414 34.615 0.00 0.00 0.00 3.21
788 844 5.918011 GGAAAAACATCAATAAACTCGCACA 59.082 36.000 0.00 0.00 0.00 4.57
789 845 5.344933 GGGAAAAACATCAATAAACTCGCAC 59.655 40.000 0.00 0.00 0.00 5.34
790 846 5.465935 GGGAAAAACATCAATAAACTCGCA 58.534 37.500 0.00 0.00 0.00 5.10
791 847 4.862574 GGGGAAAAACATCAATAAACTCGC 59.137 41.667 0.00 0.00 0.00 5.03
792 848 5.185056 AGGGGGAAAAACATCAATAAACTCG 59.815 40.000 0.00 0.00 0.00 4.18
793 849 6.605471 AGGGGGAAAAACATCAATAAACTC 57.395 37.500 0.00 0.00 0.00 3.01
794 850 6.295067 CGAAGGGGGAAAAACATCAATAAACT 60.295 38.462 0.00 0.00 0.00 2.66
795 851 5.867174 CGAAGGGGGAAAAACATCAATAAAC 59.133 40.000 0.00 0.00 0.00 2.01
796 852 5.540719 ACGAAGGGGGAAAAACATCAATAAA 59.459 36.000 0.00 0.00 0.00 1.40
797 853 5.081032 ACGAAGGGGGAAAAACATCAATAA 58.919 37.500 0.00 0.00 0.00 1.40
798 854 4.668636 ACGAAGGGGGAAAAACATCAATA 58.331 39.130 0.00 0.00 0.00 1.90
799 855 3.506398 ACGAAGGGGGAAAAACATCAAT 58.494 40.909 0.00 0.00 0.00 2.57
800 856 2.952116 ACGAAGGGGGAAAAACATCAA 58.048 42.857 0.00 0.00 0.00 2.57
801 857 2.668144 ACGAAGGGGGAAAAACATCA 57.332 45.000 0.00 0.00 0.00 3.07
802 858 3.319689 TCAAACGAAGGGGGAAAAACATC 59.680 43.478 0.00 0.00 0.00 3.06
803 859 3.069016 GTCAAACGAAGGGGGAAAAACAT 59.931 43.478 0.00 0.00 0.00 2.71
804 860 2.427812 GTCAAACGAAGGGGGAAAAACA 59.572 45.455 0.00 0.00 0.00 2.83
805 861 2.223876 GGTCAAACGAAGGGGGAAAAAC 60.224 50.000 0.00 0.00 0.00 2.43
806 862 2.033372 GGTCAAACGAAGGGGGAAAAA 58.967 47.619 0.00 0.00 0.00 1.94
807 863 1.215924 AGGTCAAACGAAGGGGGAAAA 59.784 47.619 0.00 0.00 0.00 2.29
808 864 0.848053 AGGTCAAACGAAGGGGGAAA 59.152 50.000 0.00 0.00 0.00 3.13
809 865 0.848053 AAGGTCAAACGAAGGGGGAA 59.152 50.000 0.00 0.00 0.00 3.97
810 866 0.848053 AAAGGTCAAACGAAGGGGGA 59.152 50.000 0.00 0.00 0.00 4.81
811 867 1.699730 AAAAGGTCAAACGAAGGGGG 58.300 50.000 0.00 0.00 0.00 5.40
812 868 4.076394 TGATAAAAGGTCAAACGAAGGGG 58.924 43.478 0.00 0.00 0.00 4.79
813 869 4.379499 GCTGATAAAAGGTCAAACGAAGGG 60.379 45.833 0.00 0.00 0.00 3.95
814 870 4.215399 TGCTGATAAAAGGTCAAACGAAGG 59.785 41.667 0.00 0.00 0.00 3.46
815 871 5.147162 GTGCTGATAAAAGGTCAAACGAAG 58.853 41.667 0.00 0.00 0.00 3.79
816 872 4.576873 TGTGCTGATAAAAGGTCAAACGAA 59.423 37.500 0.00 0.00 0.00 3.85
817 873 4.130857 TGTGCTGATAAAAGGTCAAACGA 58.869 39.130 0.00 0.00 0.00 3.85
818 874 4.466828 CTGTGCTGATAAAAGGTCAAACG 58.533 43.478 0.00 0.00 0.00 3.60
819 875 4.229876 GCTGTGCTGATAAAAGGTCAAAC 58.770 43.478 0.00 0.00 0.00 2.93
820 876 3.255642 GGCTGTGCTGATAAAAGGTCAAA 59.744 43.478 0.00 0.00 0.00 2.69
821 877 2.819608 GGCTGTGCTGATAAAAGGTCAA 59.180 45.455 0.00 0.00 0.00 3.18
822 878 2.224744 TGGCTGTGCTGATAAAAGGTCA 60.225 45.455 0.00 0.00 0.00 4.02
823 879 2.436417 TGGCTGTGCTGATAAAAGGTC 58.564 47.619 0.00 0.00 0.00 3.85
824 880 2.584835 TGGCTGTGCTGATAAAAGGT 57.415 45.000 0.00 0.00 0.00 3.50
825 881 4.427312 GAAATGGCTGTGCTGATAAAAGG 58.573 43.478 0.00 0.00 0.00 3.11
826 882 4.100529 CGAAATGGCTGTGCTGATAAAAG 58.899 43.478 0.00 0.00 0.00 2.27
827 883 3.673052 GCGAAATGGCTGTGCTGATAAAA 60.673 43.478 0.00 0.00 0.00 1.52
828 884 2.159393 GCGAAATGGCTGTGCTGATAAA 60.159 45.455 0.00 0.00 0.00 1.40
829 885 1.401552 GCGAAATGGCTGTGCTGATAA 59.598 47.619 0.00 0.00 0.00 1.75
830 886 1.016627 GCGAAATGGCTGTGCTGATA 58.983 50.000 0.00 0.00 0.00 2.15
831 887 1.660560 GGCGAAATGGCTGTGCTGAT 61.661 55.000 0.00 0.00 40.72 2.90
832 888 2.334946 GGCGAAATGGCTGTGCTGA 61.335 57.895 0.00 0.00 40.72 4.26
833 889 2.180017 GGCGAAATGGCTGTGCTG 59.820 61.111 0.00 0.00 40.72 4.41
840 896 0.960364 TGAAGGACAGGCGAAATGGC 60.960 55.000 0.00 0.00 45.27 4.40
841 897 0.804989 GTGAAGGACAGGCGAAATGG 59.195 55.000 0.00 0.00 0.00 3.16
842 898 1.466167 CAGTGAAGGACAGGCGAAATG 59.534 52.381 0.00 0.00 0.00 2.32
843 899 1.813513 CAGTGAAGGACAGGCGAAAT 58.186 50.000 0.00 0.00 0.00 2.17
844 900 0.884704 GCAGTGAAGGACAGGCGAAA 60.885 55.000 0.00 0.00 0.00 3.46
845 901 1.301716 GCAGTGAAGGACAGGCGAA 60.302 57.895 0.00 0.00 0.00 4.70
846 902 0.898326 TAGCAGTGAAGGACAGGCGA 60.898 55.000 0.00 0.00 35.84 5.54
847 903 0.176680 ATAGCAGTGAAGGACAGGCG 59.823 55.000 0.00 0.00 35.84 5.52
848 904 3.198872 GTTATAGCAGTGAAGGACAGGC 58.801 50.000 0.00 0.00 0.00 4.85
863 919 9.220767 GGCACAAGGATTATAAGAAGGTTATAG 57.779 37.037 0.00 0.00 0.00 1.31
943 4455 8.792633 CAAGTAATATGTCCTTTTCTTGGTGAA 58.207 33.333 0.00 0.00 0.00 3.18
953 4465 8.576442 CACTTCAAACCAAGTAATATGTCCTTT 58.424 33.333 0.00 0.00 34.70 3.11
978 4491 8.696043 CCATTAGGATGGTTCTTTATTGATCA 57.304 34.615 0.00 0.00 46.48 2.92
993 4506 2.669569 CGGCCGGCCATTAGGATG 60.670 66.667 42.78 21.82 36.89 3.51
1206 4734 1.067821 GACCATGAGCTTAGGGACTCG 59.932 57.143 16.93 0.00 41.75 4.18
1371 4899 4.272018 CCGTTCTGAAATAGGATGAGCTTG 59.728 45.833 0.00 0.00 0.00 4.01
1636 5164 5.477607 TTCTTCAGTCTCCCGAATGTTAA 57.522 39.130 0.00 0.00 36.65 2.01
1754 5289 5.705905 GGTATCTGGCCATGTAAATAGTTCC 59.294 44.000 5.51 0.00 0.00 3.62
1786 5321 6.148811 CCATTTAGCTTTACCAAACGAGAGAA 59.851 38.462 0.00 0.00 0.00 2.87
2100 5635 6.691255 TGGTTATTACTGACAGTTAACCCT 57.309 37.500 29.72 8.17 39.28 4.34
2205 5740 5.930135 GAGAGGTCTCCATTTAAGGCATTA 58.070 41.667 0.00 0.00 37.02 1.90
2283 5818 2.511659 ACTACACCACTGAGCGAGTTA 58.488 47.619 0.00 0.00 29.75 2.24
2402 5937 5.710099 CCTCCCAGATCTAGAGTGATAAGTC 59.290 48.000 16.73 0.00 0.00 3.01
2853 7827 0.321564 CCAGATTGCCAACGTCTCCA 60.322 55.000 0.00 0.00 0.00 3.86
3199 8174 1.202132 TGTCGTGTTGCAAAAGAGCAC 60.202 47.619 0.00 3.68 45.61 4.40
3214 8192 2.093288 AGAATGCACATCTCCATGTCGT 60.093 45.455 0.00 0.00 41.69 4.34
3215 8193 2.558378 AGAATGCACATCTCCATGTCG 58.442 47.619 0.00 0.00 41.69 4.35
3225 8203 6.930722 TGTCGACATATTGATAGAATGCACAT 59.069 34.615 15.76 0.00 0.00 3.21
3246 8224 1.603802 ACCTTGTCTTGCATGTTGTCG 59.396 47.619 0.00 0.00 0.00 4.35
3271 8249 4.470462 CGATATGCAGCTATTTTCTTGGC 58.530 43.478 0.00 0.00 0.00 4.52
3316 8294 1.078709 ATTTGTGATGCACGTCCTCG 58.921 50.000 0.00 0.00 37.14 4.63
3335 8313 3.751175 CAGGCAATGACCGACTTAAGAAA 59.249 43.478 10.09 0.00 33.69 2.52
3470 8449 0.467844 TGTGCAACTGCCCACATTCT 60.468 50.000 0.00 0.00 41.18 2.40
3548 8527 3.660865 AGTGGACGGTTACAATCTTGAC 58.339 45.455 0.00 0.00 0.00 3.18
3599 8578 7.494922 AAGGGGCAAATATTACAGACAATTT 57.505 32.000 0.00 0.00 0.00 1.82
3655 8635 7.033791 TGAAGCTTATAAGTCCTAACAGTTCG 58.966 38.462 13.91 0.00 0.00 3.95
3661 8641 8.235359 TCCTACTGAAGCTTATAAGTCCTAAC 57.765 38.462 13.91 0.00 0.00 2.34
3760 8740 9.468532 AAATCTCTAAACAAATTTCTTCACTGC 57.531 29.630 0.00 0.00 0.00 4.40
3778 8758 5.012239 AGGTGCAAGCATTCAAAATCTCTA 58.988 37.500 0.00 0.00 36.26 2.43
3782 8762 3.916761 TCAGGTGCAAGCATTCAAAATC 58.083 40.909 0.00 0.00 36.26 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.