Multiple sequence alignment - TraesCS2A01G423600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G423600 chr2A 100.000 4178 0 0 1 4178 678191960 678196137 0.000000e+00 7716.0
1 TraesCS2A01G423600 chr2A 100.000 530 0 0 4434 4963 678196393 678196922 0.000000e+00 979.0
2 TraesCS2A01G423600 chr2A 84.574 564 74 10 2448 3006 325794433 325793878 9.390000e-152 547.0
3 TraesCS2A01G423600 chr2D 91.580 2779 119 42 71 2792 534957319 534960039 0.000000e+00 3729.0
4 TraesCS2A01G423600 chr2D 97.134 977 27 1 3150 4125 534960192 534961168 0.000000e+00 1648.0
5 TraesCS2A01G423600 chr2D 81.761 477 28 21 4434 4895 534961195 534961627 1.320000e-90 344.0
6 TraesCS2A01G423600 chr2D 97.727 176 4 0 2831 3006 534960035 534960210 2.240000e-78 303.0
7 TraesCS2A01G423600 chr2D 88.889 117 12 1 4001 4116 74804877 74804993 5.180000e-30 143.0
8 TraesCS2A01G423600 chr2D 97.260 73 2 0 4891 4963 601995356 601995284 1.880000e-24 124.0
9 TraesCS2A01G423600 chr2B 89.973 1496 64 36 783 2227 636211914 636213374 0.000000e+00 1853.0
10 TraesCS2A01G423600 chr2B 94.484 979 47 4 3150 4128 636214192 636215163 0.000000e+00 1502.0
11 TraesCS2A01G423600 chr2B 90.153 589 35 10 2225 2795 636213611 636214194 0.000000e+00 745.0
12 TraesCS2A01G423600 chr2B 86.059 581 42 20 71 630 636210931 636211493 5.530000e-164 588.0
13 TraesCS2A01G423600 chr2B 87.202 336 21 9 4434 4755 636215191 636215518 3.650000e-96 363.0
14 TraesCS2A01G423600 chr6A 84.108 409 53 8 2450 2850 511287361 511286957 7.790000e-103 385.0
15 TraesCS2A01G423600 chr5D 84.751 341 44 6 2448 2784 21305986 21306322 7.960000e-88 335.0
16 TraesCS2A01G423600 chr5D 84.375 128 15 5 1069 1195 488236787 488236664 2.430000e-23 121.0
17 TraesCS2A01G423600 chr7D 83.025 324 40 10 2431 2748 175872782 175873096 3.780000e-71 279.0
18 TraesCS2A01G423600 chr7D 94.872 78 4 0 4886 4963 222137064 222137141 6.750000e-24 122.0
19 TraesCS2A01G423600 chr7D 95.890 73 3 0 4891 4963 66885516 66885444 8.730000e-23 119.0
20 TraesCS2A01G423600 chr5A 98.693 153 2 0 3005 3157 668154464 668154312 6.330000e-69 272.0
21 TraesCS2A01G423600 chr5A 99.329 149 1 0 3005 3153 336458998 336458850 2.280000e-68 270.0
22 TraesCS2A01G423600 chr5A 84.375 128 15 5 1069 1195 608989737 608989614 2.430000e-23 121.0
23 TraesCS2A01G423600 chr5A 84.058 69 11 0 4822 4890 703365856 703365788 3.210000e-07 67.6
24 TraesCS2A01G423600 chr3B 99.333 150 1 0 3005 3154 642821310 642821161 6.330000e-69 272.0
25 TraesCS2A01G423600 chr3B 98.675 151 2 0 3005 3155 289595041 289594891 8.190000e-68 268.0
26 TraesCS2A01G423600 chr3B 85.470 234 30 3 2448 2680 29355672 29355442 1.790000e-59 241.0
27 TraesCS2A01G423600 chr3B 85.714 84 11 1 4811 4893 566185609 566185526 2.460000e-13 87.9
28 TraesCS2A01G423600 chr7A 99.324 148 1 0 3005 3152 729274072 729274219 8.190000e-68 268.0
29 TraesCS2A01G423600 chr7A 97.260 73 2 0 4891 4963 162519406 162519478 1.880000e-24 124.0
30 TraesCS2A01G423600 chr7A 97.260 73 2 0 4891 4963 639592096 639592168 1.880000e-24 124.0
31 TraesCS2A01G423600 chr7A 92.683 41 1 2 4852 4890 686135290 686135250 1.930000e-04 58.4
32 TraesCS2A01G423600 chr4A 99.324 148 1 0 3005 3152 6886843 6886990 8.190000e-68 268.0
33 TraesCS2A01G423600 chr4A 100.000 73 0 0 4891 4963 235651598 235651526 8.670000e-28 135.0
34 TraesCS2A01G423600 chr4A 77.778 180 30 8 1059 1232 80174220 80174395 8.790000e-18 102.0
35 TraesCS2A01G423600 chr4A 87.013 77 10 0 3833 3909 80177823 80177899 2.460000e-13 87.9
36 TraesCS2A01G423600 chr4A 90.698 43 4 0 4848 4890 710667433 710667475 1.930000e-04 58.4
37 TraesCS2A01G423600 chr1A 98.052 154 3 0 3005 3158 395198162 395198315 8.190000e-68 268.0
38 TraesCS2A01G423600 chr1A 88.889 54 6 0 4836 4889 49297092 49297145 3.210000e-07 67.6
39 TraesCS2A01G423600 chr6B 94.737 171 6 3 3005 3174 422696877 422697045 3.810000e-66 263.0
40 TraesCS2A01G423600 chr6B 81.152 191 24 9 2431 2617 514608521 514608339 5.180000e-30 143.0
41 TraesCS2A01G423600 chr6B 95.890 73 3 0 4891 4963 550315011 550315083 8.730000e-23 119.0
42 TraesCS2A01G423600 chr7B 94.186 172 6 4 3005 3174 88637118 88636949 4.930000e-65 259.0
43 TraesCS2A01G423600 chr3D 82.653 196 27 4 4434 4627 554627783 554627973 3.070000e-37 167.0
44 TraesCS2A01G423600 chr3D 86.087 115 13 2 4001 4114 554627641 554627753 2.430000e-23 121.0
45 TraesCS2A01G423600 chr3D 86.364 66 9 0 4825 4890 564548041 564547976 6.890000e-09 73.1
46 TraesCS2A01G423600 chr5B 84.375 128 15 5 1069 1195 600940168 600940045 2.430000e-23 121.0
47 TraesCS2A01G423600 chr1D 95.890 73 3 0 4891 4963 415271518 415271446 8.730000e-23 119.0
48 TraesCS2A01G423600 chr1D 91.667 84 6 1 4880 4963 10210865 10210947 1.130000e-21 115.0
49 TraesCS2A01G423600 chr1B 84.821 112 17 0 4778 4889 1526471 1526582 4.060000e-21 113.0
50 TraesCS2A01G423600 chr4D 87.013 77 10 0 3833 3909 408810328 408810404 2.460000e-13 87.9
51 TraesCS2A01G423600 chr3A 97.059 34 1 0 4852 4885 647369830 647369863 1.930000e-04 58.4
52 TraesCS2A01G423600 chr3A 92.683 41 1 2 4852 4890 662877060 662877020 1.930000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G423600 chr2A 678191960 678196922 4962 False 4347.5 7716 100.0000 1 4963 2 chr2A.!!$F1 4962
1 TraesCS2A01G423600 chr2A 325793878 325794433 555 True 547.0 547 84.5740 2448 3006 1 chr2A.!!$R1 558
2 TraesCS2A01G423600 chr2D 534957319 534961627 4308 False 1506.0 3729 92.0505 71 4895 4 chr2D.!!$F2 4824
3 TraesCS2A01G423600 chr2B 636210931 636215518 4587 False 1010.2 1853 89.5742 71 4755 5 chr2B.!!$F1 4684

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
105 106 0.031585 ACGCACAAGCTTCTACACGA 59.968 50.000 0.00 0.0 39.10 4.35 F
1216 1548 0.170561 TCGCGTGCTCTTCTACTTCC 59.829 55.000 5.77 0.0 0.00 3.46 F
1257 1590 1.876416 CGAGGACGGGTTGTGTGATTT 60.876 52.381 0.00 0.0 35.72 2.17 F
3026 3655 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.0 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1472 1831 1.020861 CGCATACCTGAAGCAGTGCA 61.021 55.0 19.2 0.0 32.80 4.57 R
2832 3461 0.035458 GGCGTGGCATAGAAGGCTAT 59.965 55.0 0.0 0.0 37.83 2.97 R
3049 3678 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.0 0.0 0.0 0.00 2.74 R
4133 4767 0.035458 TCCACACACACACACACACA 59.965 50.0 0.0 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.792125 CGAAACGACGGCAAGTTC 57.208 55.556 0.00 0.00 0.00 3.01
18 19 1.154908 CGAAACGACGGCAAGTTCG 60.155 57.895 0.00 3.89 0.00 3.95
19 20 1.814211 CGAAACGACGGCAAGTTCGT 61.814 55.000 9.21 0.64 44.03 3.85
24 25 4.338327 ACGGCAAGTTCGTCTGAC 57.662 55.556 0.00 0.00 35.87 3.51
25 26 1.440060 ACGGCAAGTTCGTCTGACA 59.560 52.632 8.73 0.00 35.87 3.58
26 27 0.597637 ACGGCAAGTTCGTCTGACAG 60.598 55.000 8.73 0.00 35.87 3.51
27 28 1.862806 GGCAAGTTCGTCTGACAGC 59.137 57.895 8.73 1.83 0.00 4.40
28 29 0.880278 GGCAAGTTCGTCTGACAGCA 60.880 55.000 8.73 0.00 0.00 4.41
29 30 0.937304 GCAAGTTCGTCTGACAGCAA 59.063 50.000 8.73 0.00 0.00 3.91
30 31 1.330521 GCAAGTTCGTCTGACAGCAAA 59.669 47.619 8.73 0.00 0.00 3.68
31 32 2.223249 GCAAGTTCGTCTGACAGCAAAA 60.223 45.455 8.73 0.00 0.00 2.44
32 33 3.611517 CAAGTTCGTCTGACAGCAAAAG 58.388 45.455 8.73 0.00 0.00 2.27
33 34 3.179443 AGTTCGTCTGACAGCAAAAGA 57.821 42.857 8.73 0.00 0.00 2.52
34 35 2.866762 AGTTCGTCTGACAGCAAAAGAC 59.133 45.455 8.73 0.00 37.55 3.01
35 36 2.866762 GTTCGTCTGACAGCAAAAGACT 59.133 45.455 8.73 0.00 38.53 3.24
36 37 4.049186 GTTCGTCTGACAGCAAAAGACTA 58.951 43.478 8.73 0.00 38.53 2.59
37 38 3.639538 TCGTCTGACAGCAAAAGACTAC 58.360 45.455 8.73 0.00 38.53 2.73
38 39 2.405357 CGTCTGACAGCAAAAGACTACG 59.595 50.000 8.73 0.00 38.53 3.51
39 40 3.639538 GTCTGACAGCAAAAGACTACGA 58.360 45.455 2.24 0.00 37.84 3.43
40 41 4.049186 GTCTGACAGCAAAAGACTACGAA 58.951 43.478 2.24 0.00 37.84 3.85
41 42 4.049186 TCTGACAGCAAAAGACTACGAAC 58.951 43.478 0.00 0.00 0.00 3.95
42 43 4.051922 CTGACAGCAAAAGACTACGAACT 58.948 43.478 0.00 0.00 0.00 3.01
43 44 4.049186 TGACAGCAAAAGACTACGAACTC 58.951 43.478 0.00 0.00 0.00 3.01
44 45 3.050619 ACAGCAAAAGACTACGAACTCG 58.949 45.455 0.00 0.00 46.33 4.18
45 46 2.059541 AGCAAAAGACTACGAACTCGC 58.940 47.619 0.00 0.00 44.43 5.03
46 47 2.059541 GCAAAAGACTACGAACTCGCT 58.940 47.619 0.00 0.00 44.43 4.93
47 48 3.057736 AGCAAAAGACTACGAACTCGCTA 60.058 43.478 0.00 0.00 44.43 4.26
48 49 3.059175 GCAAAAGACTACGAACTCGCTAC 59.941 47.826 0.00 0.00 44.43 3.58
49 50 4.474113 CAAAAGACTACGAACTCGCTACT 58.526 43.478 0.00 0.00 44.43 2.57
50 51 3.743567 AAGACTACGAACTCGCTACTG 57.256 47.619 0.00 0.00 44.43 2.74
51 52 1.397692 AGACTACGAACTCGCTACTGC 59.602 52.381 0.00 0.00 44.43 4.40
52 53 1.129998 GACTACGAACTCGCTACTGCA 59.870 52.381 0.00 0.00 44.43 4.41
53 54 1.538512 ACTACGAACTCGCTACTGCAA 59.461 47.619 0.00 0.00 44.43 4.08
54 55 2.177977 CTACGAACTCGCTACTGCAAG 58.822 52.381 0.00 0.00 44.43 4.01
55 56 0.596577 ACGAACTCGCTACTGCAAGA 59.403 50.000 0.00 0.00 44.43 3.02
56 57 0.985549 CGAACTCGCTACTGCAAGAC 59.014 55.000 0.00 0.00 39.64 3.01
57 58 1.666023 CGAACTCGCTACTGCAAGACA 60.666 52.381 0.00 0.00 39.64 3.41
58 59 1.721926 GAACTCGCTACTGCAAGACAC 59.278 52.381 0.00 0.00 39.64 3.67
59 60 0.673985 ACTCGCTACTGCAAGACACA 59.326 50.000 0.00 0.00 39.64 3.72
60 61 1.063806 CTCGCTACTGCAAGACACAC 58.936 55.000 0.00 0.00 39.64 3.82
61 62 0.319555 TCGCTACTGCAAGACACACC 60.320 55.000 0.00 0.00 39.64 4.16
62 63 0.599991 CGCTACTGCAAGACACACCA 60.600 55.000 0.00 0.00 39.64 4.17
63 64 0.868406 GCTACTGCAAGACACACCAC 59.132 55.000 0.00 0.00 39.41 4.16
64 65 1.139989 CTACTGCAAGACACACCACG 58.860 55.000 0.00 0.00 37.43 4.94
65 66 0.878523 TACTGCAAGACACACCACGC 60.879 55.000 0.00 0.00 37.43 5.34
66 67 1.889105 CTGCAAGACACACCACGCT 60.889 57.895 0.00 0.00 34.07 5.07
67 68 0.599991 CTGCAAGACACACCACGCTA 60.600 55.000 0.00 0.00 34.07 4.26
68 69 0.878523 TGCAAGACACACCACGCTAC 60.879 55.000 0.00 0.00 0.00 3.58
69 70 1.566018 GCAAGACACACCACGCTACC 61.566 60.000 0.00 0.00 0.00 3.18
78 79 0.172803 ACCACGCTACCACTCGATTC 59.827 55.000 0.00 0.00 0.00 2.52
83 84 0.645868 GCTACCACTCGATTCGCAAC 59.354 55.000 0.00 0.00 0.00 4.17
93 94 3.090656 TTCGCAACGAACGCACAA 58.909 50.000 0.00 0.00 41.05 3.33
100 101 1.525197 CAACGAACGCACAAGCTTCTA 59.475 47.619 0.00 0.00 39.10 2.10
105 106 0.031585 ACGCACAAGCTTCTACACGA 59.968 50.000 0.00 0.00 39.10 4.35
108 109 1.136611 GCACAAGCTTCTACACGAACG 60.137 52.381 0.00 0.00 37.91 3.95
130 131 3.369892 GGATCTAAGCATACATGGCCGAT 60.370 47.826 0.00 0.00 0.00 4.18
154 155 4.166011 GAAGGCGCCGCATCACAC 62.166 66.667 23.20 3.70 0.00 3.82
165 166 0.816825 GCATCACACATCCCGAGCAT 60.817 55.000 0.00 0.00 0.00 3.79
221 223 3.528370 CGCTACACGGGGAGGAGG 61.528 72.222 0.00 0.00 38.44 4.30
375 380 3.251004 GGGGTGCATTCTTTCTTATAGCG 59.749 47.826 0.00 0.00 0.00 4.26
454 468 1.755395 CCCGTCACCGAGGTCCATA 60.755 63.158 0.00 0.00 35.63 2.74
467 481 1.203313 GGTCCATAGGAGGCCCATCTA 60.203 57.143 0.00 0.00 29.39 1.98
468 482 2.563134 GGTCCATAGGAGGCCCATCTAT 60.563 54.545 0.00 1.34 29.39 1.98
469 483 2.503356 GTCCATAGGAGGCCCATCTATG 59.497 54.545 21.44 21.44 39.74 2.23
470 484 2.386811 TCCATAGGAGGCCCATCTATGA 59.613 50.000 26.31 15.88 41.49 2.15
471 485 3.014458 TCCATAGGAGGCCCATCTATGAT 59.986 47.826 26.31 0.00 41.49 2.45
472 486 3.390639 CCATAGGAGGCCCATCTATGATC 59.609 52.174 26.31 6.71 41.49 2.92
473 487 1.566211 AGGAGGCCCATCTATGATCG 58.434 55.000 0.00 0.00 33.88 3.69
474 488 1.077828 AGGAGGCCCATCTATGATCGA 59.922 52.381 0.00 0.00 33.88 3.59
475 489 2.114616 GGAGGCCCATCTATGATCGAT 58.885 52.381 0.00 0.00 0.00 3.59
476 490 2.503356 GGAGGCCCATCTATGATCGATT 59.497 50.000 0.00 0.00 0.00 3.34
477 491 3.706594 GGAGGCCCATCTATGATCGATTA 59.293 47.826 0.00 0.00 0.00 1.75
478 492 4.442192 GGAGGCCCATCTATGATCGATTAC 60.442 50.000 0.00 0.00 0.00 1.89
479 493 4.357325 AGGCCCATCTATGATCGATTACT 58.643 43.478 0.00 0.00 0.00 2.24
480 494 5.519808 AGGCCCATCTATGATCGATTACTA 58.480 41.667 0.00 0.00 0.00 1.82
481 495 5.361285 AGGCCCATCTATGATCGATTACTAC 59.639 44.000 0.00 0.00 0.00 2.73
488 502 1.069432 TGATCGATTACTACTCGCGGC 60.069 52.381 6.13 0.00 36.11 6.53
545 559 2.845752 GATGGTGTGTTAGCCGCGGA 62.846 60.000 33.48 5.65 0.00 5.54
602 626 1.002366 CTCCGTGCTGCAGACATAAC 58.998 55.000 20.43 5.91 0.00 1.89
622 646 3.397527 ACCCAGAGAGAGAGAGAGAGAT 58.602 50.000 0.00 0.00 0.00 2.75
623 647 3.788142 ACCCAGAGAGAGAGAGAGAGATT 59.212 47.826 0.00 0.00 0.00 2.40
624 648 4.139786 CCCAGAGAGAGAGAGAGAGATTG 58.860 52.174 0.00 0.00 0.00 2.67
625 649 4.141413 CCCAGAGAGAGAGAGAGAGATTGA 60.141 50.000 0.00 0.00 0.00 2.57
626 650 5.061853 CCAGAGAGAGAGAGAGAGATTGAG 58.938 50.000 0.00 0.00 0.00 3.02
627 651 5.163269 CCAGAGAGAGAGAGAGAGATTGAGA 60.163 48.000 0.00 0.00 0.00 3.27
628 652 5.990386 CAGAGAGAGAGAGAGAGATTGAGAG 59.010 48.000 0.00 0.00 0.00 3.20
629 653 5.901853 AGAGAGAGAGAGAGAGATTGAGAGA 59.098 44.000 0.00 0.00 0.00 3.10
630 654 6.041865 AGAGAGAGAGAGAGAGATTGAGAGAG 59.958 46.154 0.00 0.00 0.00 3.20
631 655 5.901853 AGAGAGAGAGAGAGATTGAGAGAGA 59.098 44.000 0.00 0.00 0.00 3.10
632 656 6.041865 AGAGAGAGAGAGAGATTGAGAGAGAG 59.958 46.154 0.00 0.00 0.00 3.20
633 657 5.901853 AGAGAGAGAGAGATTGAGAGAGAGA 59.098 44.000 0.00 0.00 0.00 3.10
634 658 6.041865 AGAGAGAGAGAGATTGAGAGAGAGAG 59.958 46.154 0.00 0.00 0.00 3.20
635 659 5.901853 AGAGAGAGAGATTGAGAGAGAGAGA 59.098 44.000 0.00 0.00 0.00 3.10
636 660 6.041865 AGAGAGAGAGATTGAGAGAGAGAGAG 59.958 46.154 0.00 0.00 0.00 3.20
637 661 5.901853 AGAGAGAGATTGAGAGAGAGAGAGA 59.098 44.000 0.00 0.00 0.00 3.10
638 662 6.041865 AGAGAGAGATTGAGAGAGAGAGAGAG 59.958 46.154 0.00 0.00 0.00 3.20
639 663 5.901853 AGAGAGATTGAGAGAGAGAGAGAGA 59.098 44.000 0.00 0.00 0.00 3.10
640 664 6.041865 AGAGAGATTGAGAGAGAGAGAGAGAG 59.958 46.154 0.00 0.00 0.00 3.20
641 665 5.901853 AGAGATTGAGAGAGAGAGAGAGAGA 59.098 44.000 0.00 0.00 0.00 3.10
642 666 6.041865 AGAGATTGAGAGAGAGAGAGAGAGAG 59.958 46.154 0.00 0.00 0.00 3.20
643 667 5.901853 AGATTGAGAGAGAGAGAGAGAGAGA 59.098 44.000 0.00 0.00 0.00 3.10
685 709 2.692741 CCTTCCCCCACCTCCCTC 60.693 72.222 0.00 0.00 0.00 4.30
780 805 1.519455 GTCTGGTGGAGCGGATTCG 60.519 63.158 0.00 0.00 39.81 3.34
942 1265 2.785258 GACTCGATTGGTTGCGGC 59.215 61.111 0.00 0.00 0.00 6.53
945 1268 2.031919 TCGATTGGTTGCGGCTGT 59.968 55.556 0.00 0.00 0.00 4.40
975 1298 6.672266 TTCTGTCTGGAGAAATTAGTGACT 57.328 37.500 0.00 0.00 0.00 3.41
1015 1338 1.026718 AGTAATGGCGAACCTGCAGC 61.027 55.000 8.66 0.00 36.63 5.25
1212 1544 1.868251 CCGTCGCGTGCTCTTCTAC 60.868 63.158 5.77 0.00 0.00 2.59
1216 1548 0.170561 TCGCGTGCTCTTCTACTTCC 59.829 55.000 5.77 0.00 0.00 3.46
1257 1590 1.876416 CGAGGACGGGTTGTGTGATTT 60.876 52.381 0.00 0.00 35.72 2.17
1370 1729 9.573166 TCATTAGCATGCTATATAAGGTGTTTT 57.427 29.630 27.35 0.00 0.00 2.43
1389 1748 6.143278 GTGTTTTGTAAGGCCAAAGTAAATCG 59.857 38.462 5.01 0.00 35.85 3.34
1390 1749 5.379732 TTTGTAAGGCCAAAGTAAATCGG 57.620 39.130 5.01 0.00 31.06 4.18
1399 1758 5.336929 GGCCAAAGTAAATCGGTAACCAATT 60.337 40.000 0.00 0.00 0.00 2.32
1400 1759 5.575218 GCCAAAGTAAATCGGTAACCAATTG 59.425 40.000 0.00 0.00 0.00 2.32
1401 1760 6.683715 CCAAAGTAAATCGGTAACCAATTGT 58.316 36.000 4.43 0.00 0.00 2.71
1402 1761 7.575343 GCCAAAGTAAATCGGTAACCAATTGTA 60.575 37.037 4.43 0.00 0.00 2.41
1403 1762 7.751793 CCAAAGTAAATCGGTAACCAATTGTAC 59.248 37.037 4.43 1.28 0.00 2.90
1549 1909 8.598075 CATGCTTCAAAATTACATAAAAGAGCC 58.402 33.333 0.00 0.00 0.00 4.70
1593 1965 4.034626 TGTGTTTATGTTGTCGAACTGTGG 59.965 41.667 0.00 0.00 32.79 4.17
1766 2138 2.644992 CCAGTTTTGTCGGCAGGC 59.355 61.111 0.00 0.00 0.00 4.85
1841 2214 6.709018 ATAAAAAGGGGGTGATTACATTCG 57.291 37.500 0.00 0.00 0.00 3.34
2022 2395 7.237209 TGTATCTCACATATCCTGATTCCTG 57.763 40.000 0.00 0.00 30.04 3.86
2193 2566 2.823924 TTGAGTACTTGCGGCTTACA 57.176 45.000 0.00 0.00 0.00 2.41
2274 2886 8.297470 ACTAACCAATTTTGTATGATGCATCT 57.703 30.769 26.32 14.64 0.00 2.90
2294 2906 9.208022 TGCATCTAACTCTGCAATGTTATATAC 57.792 33.333 10.40 6.14 44.87 1.47
2332 2959 6.114767 ACCAATGAAGCTTCATGTTGTTTTT 58.885 32.000 36.16 19.64 46.60 1.94
2375 3002 7.782049 TGAACGATGAATCTAATAAGGTCACT 58.218 34.615 0.00 0.00 0.00 3.41
2442 3069 7.921786 ACAATTGAGTAGCTTATAACAAGCA 57.078 32.000 13.59 0.00 45.30 3.91
2507 3134 5.053145 TGCATGTGTTTCCAAATACCAAAC 58.947 37.500 0.00 0.00 0.00 2.93
2513 3140 7.318141 TGTGTTTCCAAATACCAAACGTTTTA 58.682 30.769 11.66 2.58 33.48 1.52
2516 3143 9.379791 TGTTTCCAAATACCAAACGTTTTATTT 57.620 25.926 18.48 18.48 33.48 1.40
2693 3320 6.380274 ACCATCTCAATCCTCGTCTAAAGTAA 59.620 38.462 0.00 0.00 0.00 2.24
2801 3430 9.337396 TCATGTGGAACGCTATATTAAGAATTT 57.663 29.630 0.00 0.00 42.39 1.82
2804 3433 9.826574 TGTGGAACGCTATATTAAGAATTTACT 57.173 29.630 0.00 0.00 42.39 2.24
2873 3502 4.162320 CCAGGCTTCTCTCTGGTAATAACA 59.838 45.833 0.00 0.00 44.03 2.41
2896 3525 9.528018 AACATAAAAACCACTTCACAGTTTATG 57.472 29.630 10.24 10.24 36.05 1.90
2910 3539 8.276252 TCACAGTTTATGGACTTATAAAAGGC 57.724 34.615 0.00 0.00 40.36 4.35
2923 3552 6.367969 ACTTATAAAAGGCGTATTATGCGAGG 59.632 38.462 6.92 0.00 37.01 4.63
2991 3620 6.978343 TGCTGCTAATTTTATCACGTTACT 57.022 33.333 0.00 0.00 0.00 2.24
2992 3621 8.657074 ATGCTGCTAATTTTATCACGTTACTA 57.343 30.769 0.00 0.00 0.00 1.82
2993 3622 8.657074 TGCTGCTAATTTTATCACGTTACTAT 57.343 30.769 0.00 0.00 0.00 2.12
2994 3623 9.104965 TGCTGCTAATTTTATCACGTTACTATT 57.895 29.630 0.00 0.00 0.00 1.73
3025 3654 2.859165 TGAGGTCATGGGTTCAAGTC 57.141 50.000 0.00 0.00 0.00 3.01
3026 3655 1.351017 TGAGGTCATGGGTTCAAGTCC 59.649 52.381 0.00 0.00 0.00 3.85
3027 3656 1.630878 GAGGTCATGGGTTCAAGTCCT 59.369 52.381 0.00 0.00 0.00 3.85
3028 3657 1.352352 AGGTCATGGGTTCAAGTCCTG 59.648 52.381 0.00 0.00 0.00 3.86
3029 3658 1.614317 GGTCATGGGTTCAAGTCCTGG 60.614 57.143 0.00 0.00 0.00 4.45
3030 3659 1.351017 GTCATGGGTTCAAGTCCTGGA 59.649 52.381 0.00 0.00 0.00 3.86
3031 3660 2.061848 TCATGGGTTCAAGTCCTGGAA 58.938 47.619 0.00 0.00 0.00 3.53
3032 3661 2.445145 TCATGGGTTCAAGTCCTGGAAA 59.555 45.455 0.00 0.00 0.00 3.13
3033 3662 2.358322 TGGGTTCAAGTCCTGGAAAC 57.642 50.000 0.00 0.00 0.00 2.78
3034 3663 1.566703 TGGGTTCAAGTCCTGGAAACA 59.433 47.619 0.00 0.00 32.36 2.83
3035 3664 2.024846 TGGGTTCAAGTCCTGGAAACAA 60.025 45.455 0.00 0.00 42.06 2.83
3036 3665 2.361119 GGGTTCAAGTCCTGGAAACAAC 59.639 50.000 0.00 0.00 42.06 3.32
3037 3666 2.361119 GGTTCAAGTCCTGGAAACAACC 59.639 50.000 0.00 5.22 42.06 3.77
3038 3667 3.288092 GTTCAAGTCCTGGAAACAACCT 58.712 45.455 0.00 0.00 42.06 3.50
3039 3668 3.208747 TCAAGTCCTGGAAACAACCTC 57.791 47.619 0.00 0.00 42.06 3.85
3040 3669 2.777692 TCAAGTCCTGGAAACAACCTCT 59.222 45.455 0.00 0.00 42.06 3.69
3041 3670 3.202151 TCAAGTCCTGGAAACAACCTCTT 59.798 43.478 0.00 0.00 42.06 2.85
3042 3671 4.410883 TCAAGTCCTGGAAACAACCTCTTA 59.589 41.667 0.00 0.00 42.06 2.10
3043 3672 4.353383 AGTCCTGGAAACAACCTCTTAC 57.647 45.455 0.00 0.00 42.06 2.34
3044 3673 3.714798 AGTCCTGGAAACAACCTCTTACA 59.285 43.478 0.00 0.00 42.06 2.41
3045 3674 4.065789 GTCCTGGAAACAACCTCTTACAG 58.934 47.826 0.00 0.00 42.06 2.74
3046 3675 3.971305 TCCTGGAAACAACCTCTTACAGA 59.029 43.478 0.00 0.00 42.06 3.41
3047 3676 4.410883 TCCTGGAAACAACCTCTTACAGAA 59.589 41.667 0.00 0.00 42.06 3.02
3048 3677 5.104277 TCCTGGAAACAACCTCTTACAGAAA 60.104 40.000 0.00 0.00 42.06 2.52
3049 3678 5.770162 CCTGGAAACAACCTCTTACAGAAAT 59.230 40.000 0.00 0.00 42.06 2.17
3050 3679 6.294176 CCTGGAAACAACCTCTTACAGAAATG 60.294 42.308 0.00 0.00 42.06 2.32
3051 3680 6.126409 TGGAAACAACCTCTTACAGAAATGT 58.874 36.000 0.00 0.00 37.44 2.71
3052 3681 7.284074 TGGAAACAACCTCTTACAGAAATGTA 58.716 34.615 0.00 0.00 37.44 2.29
3053 3682 7.444183 TGGAAACAACCTCTTACAGAAATGTAG 59.556 37.037 0.00 0.00 37.44 2.74
3054 3683 7.094762 GGAAACAACCTCTTACAGAAATGTAGG 60.095 40.741 0.00 0.00 0.00 3.18
3055 3684 5.805728 ACAACCTCTTACAGAAATGTAGGG 58.194 41.667 0.00 3.05 0.00 3.53
3056 3685 5.546499 ACAACCTCTTACAGAAATGTAGGGA 59.454 40.000 0.00 3.61 0.00 4.20
3057 3686 6.043938 ACAACCTCTTACAGAAATGTAGGGAA 59.956 38.462 0.00 0.00 0.00 3.97
3058 3687 6.697641 ACCTCTTACAGAAATGTAGGGAAA 57.302 37.500 0.00 0.00 0.00 3.13
3059 3688 6.712276 ACCTCTTACAGAAATGTAGGGAAAG 58.288 40.000 0.00 0.00 0.00 2.62
3060 3689 6.116126 CCTCTTACAGAAATGTAGGGAAAGG 58.884 44.000 0.00 0.00 0.00 3.11
3061 3690 5.497474 TCTTACAGAAATGTAGGGAAAGGC 58.503 41.667 0.00 0.00 0.00 4.35
3062 3691 5.250774 TCTTACAGAAATGTAGGGAAAGGCT 59.749 40.000 0.00 0.00 0.00 4.58
3063 3692 3.690460 ACAGAAATGTAGGGAAAGGCTG 58.310 45.455 0.00 0.00 0.00 4.85
3064 3693 2.424956 CAGAAATGTAGGGAAAGGCTGC 59.575 50.000 0.00 0.00 0.00 5.25
3065 3694 1.401905 GAAATGTAGGGAAAGGCTGCG 59.598 52.381 0.00 0.00 0.00 5.18
3066 3695 0.328258 AATGTAGGGAAAGGCTGCGT 59.672 50.000 0.00 0.00 0.00 5.24
3067 3696 1.200519 ATGTAGGGAAAGGCTGCGTA 58.799 50.000 0.00 0.00 0.00 4.42
3068 3697 0.248289 TGTAGGGAAAGGCTGCGTAC 59.752 55.000 0.00 0.00 37.28 3.67
3069 3698 0.535797 GTAGGGAAAGGCTGCGTACT 59.464 55.000 0.00 0.00 34.81 2.73
3070 3699 1.753073 GTAGGGAAAGGCTGCGTACTA 59.247 52.381 0.00 0.00 34.81 1.82
3071 3700 1.497161 AGGGAAAGGCTGCGTACTAT 58.503 50.000 0.00 0.00 0.00 2.12
3072 3701 2.674420 AGGGAAAGGCTGCGTACTATA 58.326 47.619 0.00 0.00 0.00 1.31
3073 3702 2.628657 AGGGAAAGGCTGCGTACTATAG 59.371 50.000 0.00 0.00 0.00 1.31
3074 3703 2.626743 GGGAAAGGCTGCGTACTATAGA 59.373 50.000 6.78 0.00 0.00 1.98
3075 3704 3.552478 GGGAAAGGCTGCGTACTATAGAC 60.552 52.174 6.78 0.00 0.00 2.59
3076 3705 3.552478 GGAAAGGCTGCGTACTATAGACC 60.552 52.174 6.78 0.00 0.00 3.85
3077 3706 1.618487 AGGCTGCGTACTATAGACCC 58.382 55.000 6.78 0.00 0.00 4.46
3078 3707 1.133575 AGGCTGCGTACTATAGACCCA 60.134 52.381 6.78 0.00 0.00 4.51
3079 3708 1.684983 GGCTGCGTACTATAGACCCAA 59.315 52.381 6.78 0.00 0.00 4.12
3080 3709 2.101917 GGCTGCGTACTATAGACCCAAA 59.898 50.000 6.78 0.00 0.00 3.28
3081 3710 3.381949 GCTGCGTACTATAGACCCAAAG 58.618 50.000 6.78 0.00 0.00 2.77
3082 3711 3.181478 GCTGCGTACTATAGACCCAAAGT 60.181 47.826 6.78 0.00 0.00 2.66
3083 3712 4.360563 CTGCGTACTATAGACCCAAAGTG 58.639 47.826 6.78 0.00 0.00 3.16
3084 3713 3.131577 TGCGTACTATAGACCCAAAGTGG 59.868 47.826 6.78 0.00 37.25 4.00
3085 3714 3.131755 GCGTACTATAGACCCAAAGTGGT 59.868 47.826 6.78 0.00 42.79 4.16
3090 3719 4.373771 GACCCAAAGTGGTCGGAC 57.626 61.111 0.00 0.00 44.98 4.79
3091 3720 1.302271 GACCCAAAGTGGTCGGACC 60.302 63.158 20.36 20.36 44.98 4.46
3092 3721 2.033602 CCCAAAGTGGTCGGACCC 59.966 66.667 23.81 14.91 37.50 4.46
3093 3722 2.526046 CCCAAAGTGGTCGGACCCT 61.526 63.158 23.81 16.82 37.50 4.34
3094 3723 1.454539 CCAAAGTGGTCGGACCCTT 59.545 57.895 23.81 21.08 37.50 3.95
3095 3724 0.605589 CCAAAGTGGTCGGACCCTTC 60.606 60.000 23.81 13.97 37.50 3.46
3096 3725 0.605589 CAAAGTGGTCGGACCCTTCC 60.606 60.000 23.81 9.51 37.50 3.46
3097 3726 1.775934 AAAGTGGTCGGACCCTTCCC 61.776 60.000 23.81 7.17 38.99 3.97
3098 3727 2.606826 GTGGTCGGACCCTTCCCT 60.607 66.667 23.81 0.00 38.99 4.20
3099 3728 2.606519 TGGTCGGACCCTTCCCTG 60.607 66.667 23.81 0.00 38.99 4.45
3100 3729 3.400054 GGTCGGACCCTTCCCTGG 61.400 72.222 16.55 0.00 38.99 4.45
3101 3730 2.284405 GTCGGACCCTTCCCTGGA 60.284 66.667 0.00 0.00 38.99 3.86
3102 3731 2.284405 TCGGACCCTTCCCTGGAC 60.284 66.667 0.00 0.00 38.99 4.02
3103 3732 3.400054 CGGACCCTTCCCTGGACC 61.400 72.222 0.00 0.00 38.99 4.46
3104 3733 3.015753 GGACCCTTCCCTGGACCC 61.016 72.222 0.00 0.00 35.57 4.46
3105 3734 2.125225 GACCCTTCCCTGGACCCT 59.875 66.667 0.00 0.00 0.00 4.34
3106 3735 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
3107 3736 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
3108 3737 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
3109 3738 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
3134 3763 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
3135 3764 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
3136 3765 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
3137 3766 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
3138 3767 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
3139 3768 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
3140 3769 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
3141 3770 1.152269 ATGCACCAGGTTGCCCTTT 60.152 52.632 10.46 0.00 42.25 3.11
3142 3771 0.763986 ATGCACCAGGTTGCCCTTTT 60.764 50.000 10.46 0.00 42.25 2.27
3143 3772 0.980231 TGCACCAGGTTGCCCTTTTT 60.980 50.000 10.46 0.00 42.25 1.94
3272 3901 6.442513 AGCTGAATATTTTGAGGTGCTTAC 57.557 37.500 0.00 0.00 0.00 2.34
3413 4042 4.425577 GGTTGCTACCTTCATTGTTCAG 57.574 45.455 10.33 0.00 41.53 3.02
3848 4478 1.067142 TCTGAAACGAAGGATGACCCG 60.067 52.381 0.00 0.00 40.87 5.28
3998 4628 6.923012 TGCTGCAATTCACAACAATAATAGT 58.077 32.000 0.00 0.00 0.00 2.12
3999 4629 7.028962 TGCTGCAATTCACAACAATAATAGTC 58.971 34.615 0.00 0.00 0.00 2.59
4030 4660 2.806945 TTGCAGGTAGGGGAAGATTG 57.193 50.000 0.00 0.00 0.00 2.67
4051 4681 1.005569 TCTTCCCTCAGCCGTCTAGAA 59.994 52.381 0.00 0.00 0.00 2.10
4069 4699 2.434359 GTAGGCTGTGCGGTGTCC 60.434 66.667 0.00 0.00 0.00 4.02
4110 4744 5.220567 CCGGAAAAAGGAAATGTTGTTTGTG 60.221 40.000 0.00 0.00 0.00 3.33
4111 4745 5.350091 CGGAAAAAGGAAATGTTGTTTGTGT 59.650 36.000 0.00 0.00 0.00 3.72
4112 4746 6.541969 GGAAAAAGGAAATGTTGTTTGTGTG 58.458 36.000 0.00 0.00 0.00 3.82
4113 4747 6.148645 GGAAAAAGGAAATGTTGTTTGTGTGT 59.851 34.615 0.00 0.00 0.00 3.72
4114 4748 6.479095 AAAAGGAAATGTTGTTTGTGTGTG 57.521 33.333 0.00 0.00 0.00 3.82
4115 4749 4.799564 AGGAAATGTTGTTTGTGTGTGT 57.200 36.364 0.00 0.00 0.00 3.72
4116 4750 4.493547 AGGAAATGTTGTTTGTGTGTGTG 58.506 39.130 0.00 0.00 0.00 3.82
4117 4751 4.021544 AGGAAATGTTGTTTGTGTGTGTGT 60.022 37.500 0.00 0.00 0.00 3.72
4118 4752 4.091220 GGAAATGTTGTTTGTGTGTGTGTG 59.909 41.667 0.00 0.00 0.00 3.82
4119 4753 3.932545 ATGTTGTTTGTGTGTGTGTGT 57.067 38.095 0.00 0.00 0.00 3.72
4120 4754 3.005341 TGTTGTTTGTGTGTGTGTGTG 57.995 42.857 0.00 0.00 0.00 3.82
4121 4755 2.359214 TGTTGTTTGTGTGTGTGTGTGT 59.641 40.909 0.00 0.00 0.00 3.72
4122 4756 2.695613 TGTTTGTGTGTGTGTGTGTG 57.304 45.000 0.00 0.00 0.00 3.82
4123 4757 1.950216 TGTTTGTGTGTGTGTGTGTGT 59.050 42.857 0.00 0.00 0.00 3.72
4124 4758 2.287248 TGTTTGTGTGTGTGTGTGTGTG 60.287 45.455 0.00 0.00 0.00 3.82
4125 4759 1.598882 TTGTGTGTGTGTGTGTGTGT 58.401 45.000 0.00 0.00 0.00 3.72
4126 4760 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4127 4761 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4128 4762 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4129 4763 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4130 4764 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4131 4765 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4132 4766 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4133 4767 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4134 4768 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4135 4769 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4170 4804 2.157738 GGAAACATCAACAGCAGCTCT 58.842 47.619 0.00 0.00 0.00 4.09
4484 5119 1.862827 CAAAGCAAGCTGTTTTCTGGC 59.137 47.619 0.00 0.00 28.14 4.85
4487 5122 1.286880 CAAGCTGTTTTCTGGCGGG 59.713 57.895 0.00 0.00 0.00 6.13
4488 5123 1.903404 AAGCTGTTTTCTGGCGGGG 60.903 57.895 0.00 0.00 0.00 5.73
4507 5142 1.607148 GGTTTTTAGGTCTTGCAGCGT 59.393 47.619 0.00 0.00 0.00 5.07
4535 5180 1.103803 TTCGCTATCGAGGTTGAGCT 58.896 50.000 0.00 0.00 46.34 4.09
4547 5192 4.024670 GAGGTTGAGCTTCTACTAGGGAA 58.975 47.826 0.00 0.00 0.00 3.97
4548 5193 4.027437 AGGTTGAGCTTCTACTAGGGAAG 58.973 47.826 17.78 17.78 41.97 3.46
4549 5194 3.770388 GGTTGAGCTTCTACTAGGGAAGT 59.230 47.826 20.88 12.42 41.36 3.01
4584 5229 3.450817 TGCGGATGGAATTCTGAAGAGTA 59.549 43.478 5.23 0.00 0.00 2.59
4597 5242 9.971922 AATTCTGAAGAGTAAAAACCTGAAATG 57.028 29.630 0.00 0.00 0.00 2.32
4617 5265 9.912634 TGAAATGCTACCTTTTCAATTCTTTAG 57.087 29.630 0.00 0.00 40.21 1.85
4618 5266 9.358872 GAAATGCTACCTTTTCAATTCTTTAGG 57.641 33.333 0.00 0.00 35.99 2.69
4620 5268 8.650143 ATGCTACCTTTTCAATTCTTTAGGAA 57.350 30.769 0.00 0.00 38.41 3.36
4621 5269 7.882179 TGCTACCTTTTCAATTCTTTAGGAAC 58.118 34.615 0.00 0.00 36.70 3.62
4622 5270 7.724061 TGCTACCTTTTCAATTCTTTAGGAACT 59.276 33.333 0.00 0.00 46.37 3.01
4642 5291 8.390921 AGGAACTATAAATTGAGTCCCTTTCAA 58.609 33.333 0.00 0.00 36.02 2.69
4647 5296 1.975660 TTGAGTCCCTTTCAAACGGG 58.024 50.000 0.00 0.00 42.05 5.28
4661 5310 1.570857 AACGGGCCCATCTCCATGAA 61.571 55.000 24.92 0.00 30.57 2.57
4756 5405 2.036733 ACGGATTCGAGTCCAGAAAACA 59.963 45.455 24.76 0.00 38.21 2.83
4757 5406 3.064207 CGGATTCGAGTCCAGAAAACAA 58.936 45.455 24.76 0.00 38.21 2.83
4758 5407 3.120649 CGGATTCGAGTCCAGAAAACAAC 60.121 47.826 24.76 0.00 38.21 3.32
4759 5408 3.188667 GGATTCGAGTCCAGAAAACAACC 59.811 47.826 21.14 0.00 38.20 3.77
4760 5409 3.553828 TTCGAGTCCAGAAAACAACCT 57.446 42.857 0.00 0.00 0.00 3.50
4761 5410 3.107642 TCGAGTCCAGAAAACAACCTC 57.892 47.619 0.00 0.00 0.00 3.85
4762 5411 2.698797 TCGAGTCCAGAAAACAACCTCT 59.301 45.455 0.00 0.00 0.00 3.69
4763 5412 3.134081 TCGAGTCCAGAAAACAACCTCTT 59.866 43.478 0.00 0.00 0.00 2.85
4764 5413 3.248602 CGAGTCCAGAAAACAACCTCTTG 59.751 47.826 0.00 0.00 0.00 3.02
4765 5414 4.200092 GAGTCCAGAAAACAACCTCTTGT 58.800 43.478 0.00 0.00 42.81 3.16
4766 5415 5.365619 GAGTCCAGAAAACAACCTCTTGTA 58.634 41.667 0.00 0.00 39.88 2.41
4767 5416 5.751586 AGTCCAGAAAACAACCTCTTGTAA 58.248 37.500 0.00 0.00 39.88 2.41
4768 5417 6.184789 AGTCCAGAAAACAACCTCTTGTAAA 58.815 36.000 0.00 0.00 39.88 2.01
4769 5418 6.661805 AGTCCAGAAAACAACCTCTTGTAAAA 59.338 34.615 0.00 0.00 39.88 1.52
4770 5419 7.177744 AGTCCAGAAAACAACCTCTTGTAAAAA 59.822 33.333 0.00 0.00 39.88 1.94
4771 5420 7.979537 GTCCAGAAAACAACCTCTTGTAAAAAT 59.020 33.333 0.00 0.00 39.88 1.82
4772 5421 7.978975 TCCAGAAAACAACCTCTTGTAAAAATG 59.021 33.333 0.00 0.00 39.88 2.32
4773 5422 7.254421 CCAGAAAACAACCTCTTGTAAAAATGC 60.254 37.037 0.00 0.00 39.88 3.56
4774 5423 7.277539 CAGAAAACAACCTCTTGTAAAAATGCA 59.722 33.333 0.00 0.00 39.88 3.96
4775 5424 7.492344 AGAAAACAACCTCTTGTAAAAATGCAG 59.508 33.333 0.00 0.00 39.88 4.41
4776 5425 6.463995 AACAACCTCTTGTAAAAATGCAGA 57.536 33.333 0.00 0.00 39.88 4.26
4777 5426 6.463995 ACAACCTCTTGTAAAAATGCAGAA 57.536 33.333 0.00 0.00 38.95 3.02
4778 5427 6.872920 ACAACCTCTTGTAAAAATGCAGAAA 58.127 32.000 0.00 0.00 38.95 2.52
4779 5428 7.327214 ACAACCTCTTGTAAAAATGCAGAAAA 58.673 30.769 0.00 0.00 38.95 2.29
4780 5429 7.277760 ACAACCTCTTGTAAAAATGCAGAAAAC 59.722 33.333 0.00 0.00 38.95 2.43
4796 5445 5.232202 GCAGAAAACAGCCTCTTGTAAAAAC 59.768 40.000 0.00 0.00 0.00 2.43
4798 5447 3.349488 AACAGCCTCTTGTAAAAACGC 57.651 42.857 0.00 0.00 0.00 4.84
4799 5448 2.294074 ACAGCCTCTTGTAAAAACGCA 58.706 42.857 0.00 0.00 0.00 5.24
4821 5470 4.272504 CAGAAGAAGGTTGCGTACAAAAGA 59.727 41.667 0.00 0.00 37.58 2.52
4833 5482 2.159179 ACAAAAGACCCAAGGTGCTT 57.841 45.000 0.00 0.00 35.25 3.91
4842 5491 3.131850 CAAGGTGCTTGGACCCTTT 57.868 52.632 7.69 0.00 37.77 3.11
4845 5494 1.068352 AGGTGCTTGGACCCTTTCCT 61.068 55.000 7.69 0.00 46.10 3.36
4855 5504 1.349357 GACCCTTTCCTTGACTCTGCT 59.651 52.381 0.00 0.00 0.00 4.24
4875 5524 3.397482 CTCAAGTGGGAGCTATATGCAC 58.603 50.000 0.00 0.00 45.94 4.57
4892 5541 2.228480 ACCGGGCTGCCCTTTTAGA 61.228 57.895 33.39 0.00 42.67 2.10
4893 5542 1.452108 CCGGGCTGCCCTTTTAGAG 60.452 63.158 33.39 16.86 42.67 2.43
4894 5543 2.115291 CGGGCTGCCCTTTTAGAGC 61.115 63.158 33.39 5.94 42.67 4.09
4895 5544 1.000896 GGGCTGCCCTTTTAGAGCA 60.001 57.895 30.42 0.00 41.34 4.26
4896 5545 0.396278 GGGCTGCCCTTTTAGAGCAT 60.396 55.000 30.42 0.00 41.34 3.79
4897 5546 1.028130 GGCTGCCCTTTTAGAGCATC 58.972 55.000 7.66 0.00 35.64 3.91
4898 5547 4.668243 GGGCTGCCCTTTTAGAGCATCT 62.668 54.545 30.42 0.00 45.19 2.90
4910 5559 0.678950 GAGCATCTCTAGCAGACCCC 59.321 60.000 0.00 0.00 32.26 4.95
4911 5560 1.112315 AGCATCTCTAGCAGACCCCG 61.112 60.000 0.00 0.00 32.26 5.73
4912 5561 1.365633 CATCTCTAGCAGACCCCGC 59.634 63.158 0.00 0.00 32.26 6.13
4913 5562 1.075970 ATCTCTAGCAGACCCCGCA 60.076 57.895 0.00 0.00 32.26 5.69
4914 5563 0.470833 ATCTCTAGCAGACCCCGCAT 60.471 55.000 0.00 0.00 32.26 4.73
4915 5564 0.185175 TCTCTAGCAGACCCCGCATA 59.815 55.000 0.00 0.00 0.00 3.14
4916 5565 1.040646 CTCTAGCAGACCCCGCATAA 58.959 55.000 0.00 0.00 0.00 1.90
4917 5566 0.750850 TCTAGCAGACCCCGCATAAC 59.249 55.000 0.00 0.00 0.00 1.89
4918 5567 0.597637 CTAGCAGACCCCGCATAACG 60.598 60.000 0.00 0.00 43.15 3.18
4919 5568 2.638330 TAGCAGACCCCGCATAACGC 62.638 60.000 0.00 0.00 41.76 4.84
4920 5569 2.186903 CAGACCCCGCATAACGCT 59.813 61.111 0.00 0.00 41.76 5.07
4921 5570 1.883084 CAGACCCCGCATAACGCTC 60.883 63.158 0.00 0.00 41.76 5.03
4922 5571 2.960129 GACCCCGCATAACGCTCG 60.960 66.667 0.00 0.00 41.76 5.03
4923 5572 4.524318 ACCCCGCATAACGCTCGG 62.524 66.667 0.00 0.00 41.76 4.63
4930 5579 4.460683 ATAACGCTCGGCCCGCAA 62.461 61.111 11.74 0.00 0.00 4.85
4931 5580 3.961838 ATAACGCTCGGCCCGCAAA 62.962 57.895 11.74 0.00 0.00 3.68
4934 5583 4.114997 CGCTCGGCCCGCAAAAAT 62.115 61.111 11.74 0.00 0.00 1.82
4935 5584 2.261361 GCTCGGCCCGCAAAAATT 59.739 55.556 0.00 0.00 0.00 1.82
4936 5585 1.805539 GCTCGGCCCGCAAAAATTC 60.806 57.895 0.00 0.00 0.00 2.17
4937 5586 1.153842 CTCGGCCCGCAAAAATTCC 60.154 57.895 0.00 0.00 0.00 3.01
4938 5587 2.505997 CGGCCCGCAAAAATTCCG 60.506 61.111 0.00 0.00 0.00 4.30
4939 5588 2.125713 GGCCCGCAAAAATTCCGG 60.126 61.111 0.00 0.00 41.60 5.14
4940 5589 2.813474 GCCCGCAAAAATTCCGGC 60.813 61.111 0.00 0.00 40.65 6.13
4946 5595 2.844122 GCAAAAATTCCGGCGAGTAT 57.156 45.000 9.30 0.00 0.00 2.12
4947 5596 2.450160 GCAAAAATTCCGGCGAGTATG 58.550 47.619 9.30 0.00 0.00 2.39
4948 5597 2.450160 CAAAAATTCCGGCGAGTATGC 58.550 47.619 9.30 0.00 0.00 3.14
4949 5598 0.655733 AAAATTCCGGCGAGTATGCG 59.344 50.000 9.30 0.00 35.06 4.73
4950 5599 1.157870 AAATTCCGGCGAGTATGCGG 61.158 55.000 9.30 0.00 35.06 5.69
4958 5607 4.971125 GAGTATGCGGGCTCGGGC 62.971 72.222 8.71 0.00 36.79 6.13
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.154908 CGAACTTGCCGTCGTTTCG 60.155 57.895 0.00 0.00 0.00 3.46
1 2 0.111398 GACGAACTTGCCGTCGTTTC 60.111 55.000 0.00 0.00 45.23 2.78
2 3 1.929376 GACGAACTTGCCGTCGTTT 59.071 52.632 0.00 0.00 45.23 3.60
3 4 3.621520 GACGAACTTGCCGTCGTT 58.378 55.556 0.00 0.00 45.23 3.85
7 8 0.597637 CTGTCAGACGAACTTGCCGT 60.598 55.000 0.00 0.00 43.56 5.68
8 9 1.891060 GCTGTCAGACGAACTTGCCG 61.891 60.000 3.32 0.00 0.00 5.69
9 10 0.880278 TGCTGTCAGACGAACTTGCC 60.880 55.000 3.32 0.00 0.00 4.52
10 11 0.937304 TTGCTGTCAGACGAACTTGC 59.063 50.000 3.32 0.00 0.00 4.01
11 12 3.309682 TCTTTTGCTGTCAGACGAACTTG 59.690 43.478 3.32 0.00 0.00 3.16
12 13 3.309954 GTCTTTTGCTGTCAGACGAACTT 59.690 43.478 3.32 0.00 0.00 2.66
13 14 2.866762 GTCTTTTGCTGTCAGACGAACT 59.133 45.455 3.32 0.00 0.00 3.01
14 15 2.866762 AGTCTTTTGCTGTCAGACGAAC 59.133 45.455 3.32 0.00 41.64 3.95
15 16 3.179443 AGTCTTTTGCTGTCAGACGAA 57.821 42.857 3.32 0.00 41.64 3.85
16 17 2.890808 AGTCTTTTGCTGTCAGACGA 57.109 45.000 3.32 0.00 41.64 4.20
17 18 2.405357 CGTAGTCTTTTGCTGTCAGACG 59.595 50.000 3.32 0.00 41.64 4.18
18 19 3.639538 TCGTAGTCTTTTGCTGTCAGAC 58.360 45.455 3.32 0.00 37.76 3.51
19 20 4.049186 GTTCGTAGTCTTTTGCTGTCAGA 58.951 43.478 3.32 0.00 0.00 3.27
20 21 4.051922 AGTTCGTAGTCTTTTGCTGTCAG 58.948 43.478 0.00 0.00 0.00 3.51
21 22 4.049186 GAGTTCGTAGTCTTTTGCTGTCA 58.951 43.478 0.00 0.00 0.00 3.58
22 23 3.119792 CGAGTTCGTAGTCTTTTGCTGTC 59.880 47.826 0.00 0.00 34.11 3.51
23 24 3.050619 CGAGTTCGTAGTCTTTTGCTGT 58.949 45.455 0.00 0.00 34.11 4.40
24 25 2.159960 GCGAGTTCGTAGTCTTTTGCTG 60.160 50.000 3.27 0.00 42.22 4.41
25 26 2.059541 GCGAGTTCGTAGTCTTTTGCT 58.940 47.619 3.27 0.00 42.22 3.91
26 27 2.059541 AGCGAGTTCGTAGTCTTTTGC 58.940 47.619 3.27 0.00 42.22 3.68
27 28 4.321217 CAGTAGCGAGTTCGTAGTCTTTTG 59.679 45.833 3.27 0.00 42.22 2.44
28 29 4.474113 CAGTAGCGAGTTCGTAGTCTTTT 58.526 43.478 3.27 0.00 42.22 2.27
29 30 3.670091 GCAGTAGCGAGTTCGTAGTCTTT 60.670 47.826 3.27 0.00 42.22 2.52
30 31 2.159544 GCAGTAGCGAGTTCGTAGTCTT 60.160 50.000 3.27 0.00 42.22 3.01
31 32 1.397692 GCAGTAGCGAGTTCGTAGTCT 59.602 52.381 3.27 0.00 42.22 3.24
32 33 1.129998 TGCAGTAGCGAGTTCGTAGTC 59.870 52.381 3.27 0.00 46.23 2.59
33 34 1.162698 TGCAGTAGCGAGTTCGTAGT 58.837 50.000 3.27 0.00 46.23 2.73
34 35 2.177977 CTTGCAGTAGCGAGTTCGTAG 58.822 52.381 3.27 0.00 45.52 3.51
35 36 2.257974 CTTGCAGTAGCGAGTTCGTA 57.742 50.000 3.27 0.00 45.52 3.43
36 37 3.108521 CTTGCAGTAGCGAGTTCGT 57.891 52.632 3.27 0.00 45.52 3.85
42 43 0.319555 GGTGTGTCTTGCAGTAGCGA 60.320 55.000 0.00 0.00 46.23 4.93
43 44 0.599991 TGGTGTGTCTTGCAGTAGCG 60.600 55.000 0.00 0.00 46.23 4.26
44 45 0.868406 GTGGTGTGTCTTGCAGTAGC 59.132 55.000 0.00 0.00 42.57 3.58
45 46 1.139989 CGTGGTGTGTCTTGCAGTAG 58.860 55.000 0.00 0.00 0.00 2.57
46 47 0.878523 GCGTGGTGTGTCTTGCAGTA 60.879 55.000 0.00 0.00 0.00 2.74
47 48 2.180204 GCGTGGTGTGTCTTGCAGT 61.180 57.895 0.00 0.00 0.00 4.40
48 49 0.599991 TAGCGTGGTGTGTCTTGCAG 60.600 55.000 0.00 0.00 0.00 4.41
49 50 0.878523 GTAGCGTGGTGTGTCTTGCA 60.879 55.000 0.00 0.00 0.00 4.08
50 51 1.566018 GGTAGCGTGGTGTGTCTTGC 61.566 60.000 0.00 0.00 0.00 4.01
51 52 0.249699 TGGTAGCGTGGTGTGTCTTG 60.250 55.000 0.00 0.00 0.00 3.02
52 53 0.249741 GTGGTAGCGTGGTGTGTCTT 60.250 55.000 0.00 0.00 0.00 3.01
53 54 1.113517 AGTGGTAGCGTGGTGTGTCT 61.114 55.000 0.00 0.00 0.00 3.41
54 55 0.666577 GAGTGGTAGCGTGGTGTGTC 60.667 60.000 0.00 0.00 0.00 3.67
55 56 1.366366 GAGTGGTAGCGTGGTGTGT 59.634 57.895 0.00 0.00 0.00 3.72
56 57 1.733041 CGAGTGGTAGCGTGGTGTG 60.733 63.158 0.00 0.00 0.00 3.82
57 58 1.248785 ATCGAGTGGTAGCGTGGTGT 61.249 55.000 0.00 0.00 0.00 4.16
58 59 0.108804 AATCGAGTGGTAGCGTGGTG 60.109 55.000 0.00 0.00 0.00 4.17
59 60 0.172803 GAATCGAGTGGTAGCGTGGT 59.827 55.000 0.00 0.00 0.00 4.16
60 61 0.866061 CGAATCGAGTGGTAGCGTGG 60.866 60.000 0.00 0.00 0.00 4.94
61 62 1.472276 GCGAATCGAGTGGTAGCGTG 61.472 60.000 6.91 0.00 0.00 5.34
62 63 1.226603 GCGAATCGAGTGGTAGCGT 60.227 57.895 6.91 0.00 0.00 5.07
63 64 0.800683 TTGCGAATCGAGTGGTAGCG 60.801 55.000 6.91 0.00 0.00 4.26
64 65 0.645868 GTTGCGAATCGAGTGGTAGC 59.354 55.000 6.91 0.00 0.00 3.58
65 66 0.914551 CGTTGCGAATCGAGTGGTAG 59.085 55.000 6.91 0.00 0.00 3.18
66 67 0.522626 TCGTTGCGAATCGAGTGGTA 59.477 50.000 6.91 0.00 31.06 3.25
67 68 0.319211 TTCGTTGCGAATCGAGTGGT 60.319 50.000 6.91 0.00 41.05 4.16
68 69 2.441023 TTCGTTGCGAATCGAGTGG 58.559 52.632 6.91 0.00 41.05 4.00
78 79 2.964924 AAGCTTGTGCGTTCGTTGCG 62.965 55.000 0.00 0.00 45.42 4.85
83 84 1.136611 GTGTAGAAGCTTGTGCGTTCG 60.137 52.381 2.10 0.00 45.42 3.95
87 88 1.136611 GTTCGTGTAGAAGCTTGTGCG 60.137 52.381 2.10 7.19 45.42 5.34
88 89 1.136611 CGTTCGTGTAGAAGCTTGTGC 60.137 52.381 2.10 3.63 39.95 4.57
93 94 2.093106 AGATCCGTTCGTGTAGAAGCT 58.907 47.619 0.00 0.00 39.95 3.74
100 101 2.961526 ATGCTTAGATCCGTTCGTGT 57.038 45.000 0.00 0.00 0.00 4.49
105 106 3.403038 GCCATGTATGCTTAGATCCGTT 58.597 45.455 0.00 0.00 0.00 4.44
108 109 2.028112 TCGGCCATGTATGCTTAGATCC 60.028 50.000 2.24 0.00 0.00 3.36
188 189 3.124686 CGCTCTACCTCTGCTCCC 58.875 66.667 0.00 0.00 0.00 4.30
199 201 1.822613 CTCCCCGTGTAGCGCTCTA 60.823 63.158 16.34 0.00 39.71 2.43
221 223 1.199615 AGCAGGTAAAGGCTCTCCTC 58.800 55.000 0.00 0.00 43.40 3.71
311 316 1.752310 CTCCTCTCAGAGCCTCGCA 60.752 63.158 0.00 0.00 0.00 5.10
314 319 0.823460 CCAACTCCTCTCAGAGCCTC 59.177 60.000 0.00 0.00 37.39 4.70
353 358 3.251004 CGCTATAAGAAAGAATGCACCCC 59.749 47.826 0.00 0.00 0.00 4.95
359 364 3.058639 GCCCAGCGCTATAAGAAAGAATG 60.059 47.826 10.99 0.00 0.00 2.67
360 365 3.142174 GCCCAGCGCTATAAGAAAGAAT 58.858 45.455 10.99 0.00 0.00 2.40
362 367 2.240493 GCCCAGCGCTATAAGAAAGA 57.760 50.000 10.99 0.00 0.00 2.52
403 414 3.787001 GGTGGAGAGGCCCGGAAG 61.787 72.222 0.73 0.00 34.97 3.46
449 463 2.386811 TCATAGATGGGCCTCCTATGGA 59.613 50.000 28.62 19.42 39.86 3.41
454 468 1.077828 TCGATCATAGATGGGCCTCCT 59.922 52.381 4.53 4.14 0.00 3.69
467 481 2.414293 GCCGCGAGTAGTAATCGATCAT 60.414 50.000 23.00 0.00 42.76 2.45
468 482 1.069432 GCCGCGAGTAGTAATCGATCA 60.069 52.381 23.00 0.00 42.76 2.92
469 483 1.604396 GCCGCGAGTAGTAATCGATC 58.396 55.000 23.00 5.94 42.76 3.69
470 484 0.110328 CGCCGCGAGTAGTAATCGAT 60.110 55.000 23.00 0.00 42.76 3.59
471 485 1.277739 CGCCGCGAGTAGTAATCGA 59.722 57.895 23.00 0.00 42.76 3.59
472 486 1.724929 CCGCCGCGAGTAGTAATCG 60.725 63.158 15.93 15.30 43.00 3.34
473 487 1.371389 CCCGCCGCGAGTAGTAATC 60.371 63.158 15.93 0.00 0.00 1.75
474 488 2.726274 CCCGCCGCGAGTAGTAAT 59.274 61.111 15.93 0.00 0.00 1.89
475 489 3.520862 CCCCGCCGCGAGTAGTAA 61.521 66.667 15.93 0.00 0.00 2.24
512 526 0.107508 ACCATCAACGGCCTGATCTG 60.108 55.000 4.53 2.75 33.66 2.90
545 559 2.866523 TAAGATCGGACGGCCCAGGT 62.867 60.000 0.00 0.00 34.14 4.00
594 614 4.476846 TCTCTCTCTCTCTGGGTTATGTCT 59.523 45.833 0.00 0.00 0.00 3.41
602 626 4.139786 CAATCTCTCTCTCTCTCTCTGGG 58.860 52.174 0.00 0.00 0.00 4.45
622 646 5.272402 TCTCTCTCTCTCTCTCTCTCTCAA 58.728 45.833 0.00 0.00 0.00 3.02
623 647 4.871822 TCTCTCTCTCTCTCTCTCTCTCA 58.128 47.826 0.00 0.00 0.00 3.27
624 648 5.047377 GGATCTCTCTCTCTCTCTCTCTCTC 60.047 52.000 0.00 0.00 0.00 3.20
625 649 4.837860 GGATCTCTCTCTCTCTCTCTCTCT 59.162 50.000 0.00 0.00 0.00 3.10
626 650 4.020662 GGGATCTCTCTCTCTCTCTCTCTC 60.021 54.167 0.00 0.00 0.00 3.20
627 651 3.906846 GGGATCTCTCTCTCTCTCTCTCT 59.093 52.174 0.00 0.00 0.00 3.10
628 652 3.008485 GGGGATCTCTCTCTCTCTCTCTC 59.992 56.522 0.00 0.00 0.00 3.20
629 653 2.982488 GGGGATCTCTCTCTCTCTCTCT 59.018 54.545 0.00 0.00 0.00 3.10
630 654 2.982488 AGGGGATCTCTCTCTCTCTCTC 59.018 54.545 0.00 0.00 0.00 3.20
631 655 2.982488 GAGGGGATCTCTCTCTCTCTCT 59.018 54.545 0.00 0.00 39.38 3.10
632 656 2.289694 CGAGGGGATCTCTCTCTCTCTC 60.290 59.091 8.79 0.00 40.30 3.20
633 657 1.699634 CGAGGGGATCTCTCTCTCTCT 59.300 57.143 8.79 0.00 40.30 3.10
634 658 1.882352 GCGAGGGGATCTCTCTCTCTC 60.882 61.905 8.79 0.00 40.30 3.20
635 659 0.110486 GCGAGGGGATCTCTCTCTCT 59.890 60.000 8.79 0.00 40.30 3.10
636 660 0.893727 GGCGAGGGGATCTCTCTCTC 60.894 65.000 8.79 2.21 40.30 3.20
637 661 1.152830 GGCGAGGGGATCTCTCTCT 59.847 63.158 8.79 0.00 40.30 3.10
638 662 2.265182 CGGCGAGGGGATCTCTCTC 61.265 68.421 0.00 7.68 40.30 3.20
639 663 2.203422 CGGCGAGGGGATCTCTCT 60.203 66.667 0.00 0.22 40.30 3.10
640 664 2.519780 ACGGCGAGGGGATCTCTC 60.520 66.667 16.62 0.00 40.30 3.20
641 665 2.835431 CACGGCGAGGGGATCTCT 60.835 66.667 16.62 0.00 40.30 3.10
757 782 1.762460 CCGCTCCACCAGACCCTAT 60.762 63.158 0.00 0.00 0.00 2.57
780 805 0.450983 AGTTCGATCGACTTCGGGAC 59.549 55.000 19.26 11.51 39.56 4.46
942 1265 4.697514 TCTCCAGACAGAAAAGACAACAG 58.302 43.478 0.00 0.00 0.00 3.16
945 1268 7.993183 ACTAATTTCTCCAGACAGAAAAGACAA 59.007 33.333 0.01 0.00 43.88 3.18
1212 1544 1.153349 GGCGCTAGAACCCTGGAAG 60.153 63.158 7.64 0.00 0.00 3.46
1216 1548 2.105128 CGAGGCGCTAGAACCCTG 59.895 66.667 7.64 0.00 0.00 4.45
1249 1582 9.691362 ATGGTAACTTAAAATCACAAATCACAC 57.309 29.630 0.00 0.00 37.61 3.82
1257 1590 9.219603 CTCTCTTCATGGTAACTTAAAATCACA 57.780 33.333 0.00 0.00 37.61 3.58
1370 1729 4.023726 ACCGATTTACTTTGGCCTTACA 57.976 40.909 3.32 0.00 0.00 2.41
1389 1748 5.697633 TCTGAAACGAGTACAATTGGTTACC 59.302 40.000 10.83 0.00 0.00 2.85
1390 1749 6.774354 TCTGAAACGAGTACAATTGGTTAC 57.226 37.500 10.83 4.31 0.00 2.50
1472 1831 1.020861 CGCATACCTGAAGCAGTGCA 61.021 55.000 19.20 0.00 32.80 4.57
1522 1881 9.357652 GCTCTTTTATGTAATTTTGAAGCATGA 57.642 29.630 0.00 0.00 0.00 3.07
1547 1907 1.335145 TAAGGTACATAGCTCCCGGC 58.665 55.000 0.00 0.00 42.19 6.13
1549 1909 2.563179 AGCATAAGGTACATAGCTCCCG 59.437 50.000 0.00 0.00 32.81 5.14
1593 1965 6.037098 ACACGAATAGAATAGTGACTGCTTC 58.963 40.000 0.00 0.00 37.95 3.86
1766 2138 1.291184 TGCAGACTCGGTTTGATGCG 61.291 55.000 0.00 0.00 36.47 4.73
1943 2316 2.022035 AGGGATTCTGGTATCAGGGTGA 60.022 50.000 2.43 0.00 41.23 4.02
2022 2395 5.008118 GGCTCTTTTGTCATATCAAGCTACC 59.992 44.000 0.00 0.00 0.00 3.18
2193 2566 0.606401 CACCGATGACACCCAAGCTT 60.606 55.000 0.00 0.00 0.00 3.74
2294 2906 7.820648 AGCTTCATTGGTTGTAGAATTTGTAG 58.179 34.615 0.00 0.00 0.00 2.74
2297 2909 7.147312 TGAAGCTTCATTGGTTGTAGAATTTG 58.853 34.615 25.16 0.00 31.01 2.32
2332 2959 4.469657 GTTCATGCCAGGGTATTGGAATA 58.530 43.478 0.00 0.00 40.87 1.75
2477 3104 5.781210 TTTGGAAACACATGCAGTATTCA 57.219 34.783 0.00 0.00 42.67 2.57
2507 3134 5.293560 TCTCCCAAAGGCAAAAATAAAACG 58.706 37.500 0.00 0.00 0.00 3.60
2513 3140 2.974794 AGCTTCTCCCAAAGGCAAAAAT 59.025 40.909 0.00 0.00 0.00 1.82
2516 3143 1.963515 GAAGCTTCTCCCAAAGGCAAA 59.036 47.619 19.44 0.00 0.00 3.68
2552 3179 6.435277 ACTTCAGTATCATCAACCTGCATTTT 59.565 34.615 0.00 0.00 0.00 1.82
2554 3181 5.503927 ACTTCAGTATCATCAACCTGCATT 58.496 37.500 0.00 0.00 0.00 3.56
2693 3320 9.803315 GGACTAAACAGAAAAGAAAGATTGTTT 57.197 29.630 5.82 5.82 40.56 2.83
2801 3430 7.851387 TCACAAACATGTTAACAGACAAGTA 57.149 32.000 12.39 0.00 31.85 2.24
2804 3433 9.891828 GATAATCACAAACATGTTAACAGACAA 57.108 29.630 12.39 1.18 32.47 3.18
2813 3442 9.632638 AAGGCTATAGATAATCACAAACATGTT 57.367 29.630 4.92 4.92 0.00 2.71
2821 3450 7.400052 TGGCATAGAAGGCTATAGATAATCACA 59.600 37.037 3.21 0.00 35.58 3.58
2822 3451 7.708752 GTGGCATAGAAGGCTATAGATAATCAC 59.291 40.741 3.21 0.00 35.58 3.06
2832 3461 0.035458 GGCGTGGCATAGAAGGCTAT 59.965 55.000 0.00 0.00 37.83 2.97
2873 3502 8.357402 GTCCATAAACTGTGAAGTGGTTTTTAT 58.643 33.333 0.00 0.00 35.29 1.40
2896 3525 6.366877 TCGCATAATACGCCTTTTATAAGTCC 59.633 38.462 0.00 0.00 0.00 3.85
2910 3539 3.364889 TGAGGTTCCTCGCATAATACG 57.635 47.619 13.27 0.00 35.96 3.06
2923 3552 2.101415 AGCCAAACAGCTTTTGAGGTTC 59.899 45.455 17.53 0.62 41.41 3.62
3005 3634 2.025887 GGACTTGAACCCATGACCTCAT 60.026 50.000 0.00 0.00 36.96 2.90
3006 3635 1.351017 GGACTTGAACCCATGACCTCA 59.649 52.381 0.00 0.00 32.45 3.86
3007 3636 1.630878 AGGACTTGAACCCATGACCTC 59.369 52.381 0.00 0.00 37.82 3.85
3008 3637 1.352352 CAGGACTTGAACCCATGACCT 59.648 52.381 0.00 0.00 40.96 3.85
3009 3638 1.614317 CCAGGACTTGAACCCATGACC 60.614 57.143 0.00 0.00 34.29 4.02
3010 3639 1.351017 TCCAGGACTTGAACCCATGAC 59.649 52.381 0.00 0.00 0.00 3.06
3011 3640 1.741028 TCCAGGACTTGAACCCATGA 58.259 50.000 0.00 0.00 0.00 3.07
3012 3641 2.558359 GTTTCCAGGACTTGAACCCATG 59.442 50.000 0.00 0.00 0.00 3.66
3013 3642 2.176798 TGTTTCCAGGACTTGAACCCAT 59.823 45.455 0.00 0.00 0.00 4.00
3014 3643 1.566703 TGTTTCCAGGACTTGAACCCA 59.433 47.619 0.00 0.00 0.00 4.51
3015 3644 2.358322 TGTTTCCAGGACTTGAACCC 57.642 50.000 0.00 0.00 0.00 4.11
3016 3645 2.361119 GGTTGTTTCCAGGACTTGAACC 59.639 50.000 0.00 0.00 0.00 3.62
3017 3646 3.288092 AGGTTGTTTCCAGGACTTGAAC 58.712 45.455 0.00 0.00 0.00 3.18
3018 3647 3.202151 AGAGGTTGTTTCCAGGACTTGAA 59.798 43.478 0.00 0.00 0.00 2.69
3019 3648 2.777692 AGAGGTTGTTTCCAGGACTTGA 59.222 45.455 0.00 0.00 0.00 3.02
3020 3649 3.214696 AGAGGTTGTTTCCAGGACTTG 57.785 47.619 0.00 0.00 0.00 3.16
3021 3650 3.953542 AAGAGGTTGTTTCCAGGACTT 57.046 42.857 0.00 0.00 0.00 3.01
3022 3651 3.714798 TGTAAGAGGTTGTTTCCAGGACT 59.285 43.478 0.00 0.00 0.00 3.85
3023 3652 4.065789 CTGTAAGAGGTTGTTTCCAGGAC 58.934 47.826 0.00 0.00 34.07 3.85
3024 3653 3.971305 TCTGTAAGAGGTTGTTTCCAGGA 59.029 43.478 0.00 0.00 38.67 3.86
3025 3654 4.351874 TCTGTAAGAGGTTGTTTCCAGG 57.648 45.455 0.00 0.00 38.67 4.45
3038 3667 5.250774 AGCCTTTCCCTACATTTCTGTAAGA 59.749 40.000 0.00 0.00 44.68 2.10
3039 3668 5.355350 CAGCCTTTCCCTACATTTCTGTAAG 59.645 44.000 0.00 0.00 37.41 2.34
3040 3669 5.253330 CAGCCTTTCCCTACATTTCTGTAA 58.747 41.667 0.00 0.00 37.41 2.41
3041 3670 4.843728 CAGCCTTTCCCTACATTTCTGTA 58.156 43.478 0.00 0.00 36.79 2.74
3042 3671 3.690460 CAGCCTTTCCCTACATTTCTGT 58.310 45.455 0.00 0.00 39.49 3.41
3043 3672 2.424956 GCAGCCTTTCCCTACATTTCTG 59.575 50.000 0.00 0.00 0.00 3.02
3044 3673 2.728007 GCAGCCTTTCCCTACATTTCT 58.272 47.619 0.00 0.00 0.00 2.52
3045 3674 1.401905 CGCAGCCTTTCCCTACATTTC 59.598 52.381 0.00 0.00 0.00 2.17
3046 3675 1.271926 ACGCAGCCTTTCCCTACATTT 60.272 47.619 0.00 0.00 0.00 2.32
3047 3676 0.328258 ACGCAGCCTTTCCCTACATT 59.672 50.000 0.00 0.00 0.00 2.71
3048 3677 1.134491 GTACGCAGCCTTTCCCTACAT 60.134 52.381 0.00 0.00 0.00 2.29
3049 3678 0.248289 GTACGCAGCCTTTCCCTACA 59.752 55.000 0.00 0.00 0.00 2.74
3050 3679 0.535797 AGTACGCAGCCTTTCCCTAC 59.464 55.000 0.00 0.00 0.00 3.18
3051 3680 2.148446 TAGTACGCAGCCTTTCCCTA 57.852 50.000 0.00 0.00 0.00 3.53
3052 3681 1.497161 ATAGTACGCAGCCTTTCCCT 58.503 50.000 0.00 0.00 0.00 4.20
3053 3682 2.626743 TCTATAGTACGCAGCCTTTCCC 59.373 50.000 0.00 0.00 0.00 3.97
3054 3683 3.552478 GGTCTATAGTACGCAGCCTTTCC 60.552 52.174 0.00 0.00 0.00 3.13
3055 3684 3.552478 GGGTCTATAGTACGCAGCCTTTC 60.552 52.174 0.00 0.00 0.00 2.62
3056 3685 2.364647 GGGTCTATAGTACGCAGCCTTT 59.635 50.000 0.00 0.00 0.00 3.11
3057 3686 1.962100 GGGTCTATAGTACGCAGCCTT 59.038 52.381 0.00 0.00 0.00 4.35
3058 3687 1.133575 TGGGTCTATAGTACGCAGCCT 60.134 52.381 13.98 0.00 35.18 4.58
3059 3688 1.325355 TGGGTCTATAGTACGCAGCC 58.675 55.000 13.98 8.23 35.18 4.85
3060 3689 3.181478 ACTTTGGGTCTATAGTACGCAGC 60.181 47.826 16.00 2.07 40.36 5.25
3061 3690 4.360563 CACTTTGGGTCTATAGTACGCAG 58.639 47.826 16.00 11.29 40.36 5.18
3062 3691 3.131577 CCACTTTGGGTCTATAGTACGCA 59.868 47.826 13.98 13.98 37.94 5.24
3063 3692 3.131755 ACCACTTTGGGTCTATAGTACGC 59.868 47.826 0.00 6.13 43.37 4.42
3064 3693 4.996788 ACCACTTTGGGTCTATAGTACG 57.003 45.455 0.00 0.00 43.37 3.67
3074 3703 2.826003 GGGTCCGACCACTTTGGGT 61.826 63.158 19.43 0.00 43.37 4.51
3075 3704 2.033602 GGGTCCGACCACTTTGGG 59.966 66.667 19.43 0.00 43.37 4.12
3076 3705 0.605589 GAAGGGTCCGACCACTTTGG 60.606 60.000 19.43 0.00 41.02 3.28
3077 3706 0.605589 GGAAGGGTCCGACCACTTTG 60.606 60.000 19.43 0.00 41.02 2.77
3078 3707 1.759236 GGAAGGGTCCGACCACTTT 59.241 57.895 19.43 9.96 41.02 2.66
3079 3708 2.222013 GGGAAGGGTCCGACCACTT 61.222 63.158 19.43 17.88 46.04 3.16
3080 3709 2.606826 GGGAAGGGTCCGACCACT 60.607 66.667 19.43 10.80 46.04 4.00
3081 3710 2.606826 AGGGAAGGGTCCGACCAC 60.607 66.667 19.43 8.70 46.04 4.16
3082 3711 2.606519 CAGGGAAGGGTCCGACCA 60.607 66.667 19.43 0.00 46.04 4.02
3083 3712 3.400054 CCAGGGAAGGGTCCGACC 61.400 72.222 9.30 9.30 46.04 4.79
3084 3713 2.284405 TCCAGGGAAGGGTCCGAC 60.284 66.667 0.00 0.00 46.04 4.79
3085 3714 2.284405 GTCCAGGGAAGGGTCCGA 60.284 66.667 0.00 0.00 46.04 4.55
3086 3715 3.400054 GGTCCAGGGAAGGGTCCG 61.400 72.222 0.00 0.00 46.04 4.79
3087 3716 3.015753 GGGTCCAGGGAAGGGTCC 61.016 72.222 0.00 0.00 44.10 4.46
3088 3717 2.125225 AGGGTCCAGGGAAGGGTC 59.875 66.667 0.00 0.00 0.00 4.46
3089 3718 2.204151 CAGGGTCCAGGGAAGGGT 60.204 66.667 0.00 0.00 0.00 4.34
3090 3719 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
3091 3720 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
3092 3721 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
3104 3733 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
3107 3736 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
3108 3737 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
3109 3738 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
3110 3739 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
3116 3745 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
3117 3746 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
3118 3747 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
3119 3748 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
3120 3749 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
3151 3780 8.424918 CCAGTCCAAGTGATAACTGATAATAGT 58.575 37.037 3.06 0.00 41.26 2.12
3152 3781 8.642432 TCCAGTCCAAGTGATAACTGATAATAG 58.358 37.037 3.06 0.00 41.26 1.73
3202 3831 7.035840 TGTTGCAAAAATGTTGGCATATTTT 57.964 28.000 0.00 13.83 43.37 1.82
3272 3901 6.007936 TGTGTATTCCAACCAAAGAAATCG 57.992 37.500 0.00 0.00 0.00 3.34
3395 4024 5.227569 TCTTCTGAACAATGAAGGTAGCA 57.772 39.130 0.00 0.00 39.85 3.49
3413 4042 6.149142 GTCCAATATCATCCAGCAGAATCTTC 59.851 42.308 0.00 0.00 0.00 2.87
3776 4405 7.436673 CGGTAACTTTGTTCCATTTGATTTGAA 59.563 33.333 0.00 0.00 0.00 2.69
3998 4628 3.777106 ACCTGCAATTCACAAGAGAGA 57.223 42.857 0.00 0.00 0.00 3.10
3999 4629 3.937706 CCTACCTGCAATTCACAAGAGAG 59.062 47.826 0.00 0.00 0.00 3.20
4030 4660 0.741915 CTAGACGGCTGAGGGAAGAC 59.258 60.000 0.00 0.00 0.00 3.01
4051 4681 2.657237 GACACCGCACAGCCTACT 59.343 61.111 0.00 0.00 0.00 2.57
4110 4744 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4111 4745 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4112 4746 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4113 4747 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4114 4748 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4115 4749 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4116 4750 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4117 4751 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4118 4752 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4119 4753 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4120 4754 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4121 4755 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4122 4756 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4123 4757 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4124 4758 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4125 4759 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4126 4760 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4127 4761 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4128 4762 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4129 4763 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4130 4764 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4131 4765 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4132 4766 0.167908 CCACACACACACACACACAC 59.832 55.000 0.00 0.00 0.00 3.82
4133 4767 0.035458 TCCACACACACACACACACA 59.965 50.000 0.00 0.00 0.00 3.72
4134 4768 1.160989 TTCCACACACACACACACAC 58.839 50.000 0.00 0.00 0.00 3.82
4135 4769 1.537638 GTTTCCACACACACACACACA 59.462 47.619 0.00 0.00 0.00 3.72
4454 5088 1.477700 AGCTTGCTTTGCTTGTGTTCA 59.522 42.857 0.00 0.00 37.52 3.18
4484 5119 1.539827 CTGCAAGACCTAAAAACCCCG 59.460 52.381 0.00 0.00 34.07 5.73
4487 5122 1.607148 ACGCTGCAAGACCTAAAAACC 59.393 47.619 0.00 0.00 34.07 3.27
4488 5123 3.349488 AACGCTGCAAGACCTAAAAAC 57.651 42.857 0.00 0.00 34.07 2.43
4518 5163 1.066303 AGAAGCTCAACCTCGATAGCG 59.934 52.381 0.00 0.00 39.94 4.26
4584 5229 6.883744 TGAAAAGGTAGCATTTCAGGTTTTT 58.116 32.000 18.42 2.50 39.81 1.94
4597 5242 8.112016 AGTTCCTAAAGAATTGAAAAGGTAGC 57.888 34.615 0.00 0.00 36.69 3.58
4617 5265 8.575649 TTGAAAGGGACTCAATTTATAGTTCC 57.424 34.615 2.56 2.56 41.16 3.62
4618 5266 9.841880 GTTTGAAAGGGACTCAATTTATAGTTC 57.158 33.333 0.00 0.00 38.49 3.01
4620 5268 7.120726 CCGTTTGAAAGGGACTCAATTTATAGT 59.879 37.037 10.98 0.00 38.49 2.12
4621 5269 7.472543 CCGTTTGAAAGGGACTCAATTTATAG 58.527 38.462 10.98 0.00 38.49 1.31
4622 5270 7.385778 CCGTTTGAAAGGGACTCAATTTATA 57.614 36.000 10.98 0.00 38.49 0.98
4642 5291 1.570857 TTCATGGAGATGGGCCCGTT 61.571 55.000 20.25 7.51 0.00 4.44
4647 5296 3.091545 TGAAAGTTTCATGGAGATGGGC 58.908 45.455 14.35 0.00 34.08 5.36
4661 5310 8.627208 ATGAGTTTCTGTGTGATATGAAAGTT 57.373 30.769 0.00 0.00 33.76 2.66
4739 5388 4.065789 GAGGTTGTTTTCTGGACTCGAAT 58.934 43.478 0.00 0.00 0.00 3.34
4756 5405 7.327214 TGTTTTCTGCATTTTTACAAGAGGTT 58.673 30.769 0.00 0.00 0.00 3.50
4757 5406 6.872920 TGTTTTCTGCATTTTTACAAGAGGT 58.127 32.000 0.00 0.00 0.00 3.85
4758 5407 6.074142 GCTGTTTTCTGCATTTTTACAAGAGG 60.074 38.462 0.00 0.00 42.90 3.69
4759 5408 6.074142 GGCTGTTTTCTGCATTTTTACAAGAG 60.074 38.462 0.00 0.00 44.72 2.85
4760 5409 5.752955 GGCTGTTTTCTGCATTTTTACAAGA 59.247 36.000 0.00 0.00 44.72 3.02
4761 5410 5.754890 AGGCTGTTTTCTGCATTTTTACAAG 59.245 36.000 0.00 0.00 44.72 3.16
4762 5411 5.669477 AGGCTGTTTTCTGCATTTTTACAA 58.331 33.333 0.00 0.00 44.72 2.41
4763 5412 5.068987 AGAGGCTGTTTTCTGCATTTTTACA 59.931 36.000 0.00 0.00 44.72 2.41
4764 5413 5.532557 AGAGGCTGTTTTCTGCATTTTTAC 58.467 37.500 0.00 0.00 44.72 2.01
4765 5414 5.789643 AGAGGCTGTTTTCTGCATTTTTA 57.210 34.783 0.00 0.00 44.72 1.52
4766 5415 4.677673 AGAGGCTGTTTTCTGCATTTTT 57.322 36.364 0.00 0.00 44.72 1.94
4767 5416 4.141869 ACAAGAGGCTGTTTTCTGCATTTT 60.142 37.500 0.00 0.00 44.72 1.82
4768 5417 3.385755 ACAAGAGGCTGTTTTCTGCATTT 59.614 39.130 0.00 0.00 44.72 2.32
4769 5418 2.961062 ACAAGAGGCTGTTTTCTGCATT 59.039 40.909 0.00 0.00 44.72 3.56
4770 5419 2.590821 ACAAGAGGCTGTTTTCTGCAT 58.409 42.857 0.00 0.00 44.72 3.96
4771 5420 2.057137 ACAAGAGGCTGTTTTCTGCA 57.943 45.000 0.00 0.00 44.72 4.41
4772 5421 4.568152 TTTACAAGAGGCTGTTTTCTGC 57.432 40.909 0.00 0.00 42.71 4.26
4773 5422 5.455525 CGTTTTTACAAGAGGCTGTTTTCTG 59.544 40.000 0.00 0.00 0.00 3.02
4774 5423 5.578776 CGTTTTTACAAGAGGCTGTTTTCT 58.421 37.500 0.00 0.00 0.00 2.52
4775 5424 4.206404 GCGTTTTTACAAGAGGCTGTTTTC 59.794 41.667 0.00 0.00 0.00 2.29
4776 5425 4.109766 GCGTTTTTACAAGAGGCTGTTTT 58.890 39.130 0.00 0.00 0.00 2.43
4777 5426 3.129638 TGCGTTTTTACAAGAGGCTGTTT 59.870 39.130 0.00 0.00 0.00 2.83
4778 5427 2.685897 TGCGTTTTTACAAGAGGCTGTT 59.314 40.909 0.00 0.00 0.00 3.16
4779 5428 2.290641 CTGCGTTTTTACAAGAGGCTGT 59.709 45.455 0.00 0.00 0.00 4.40
4780 5429 2.548057 TCTGCGTTTTTACAAGAGGCTG 59.452 45.455 0.00 0.00 0.00 4.85
4798 5447 4.272504 TCTTTTGTACGCAACCTTCTTCTG 59.727 41.667 0.00 0.00 33.82 3.02
4799 5448 4.272748 GTCTTTTGTACGCAACCTTCTTCT 59.727 41.667 0.00 0.00 33.82 2.85
4838 5487 2.847327 TGAGCAGAGTCAAGGAAAGG 57.153 50.000 0.00 0.00 0.00 3.11
4845 5494 1.345741 CTCCCACTTGAGCAGAGTCAA 59.654 52.381 0.00 0.00 35.16 3.18
4855 5504 3.475566 GTGCATATAGCTCCCACTTGA 57.524 47.619 0.00 0.00 45.94 3.02
4887 5536 3.639094 GGGTCTGCTAGAGATGCTCTAAA 59.361 47.826 5.75 0.00 41.74 1.85
4892 5541 1.112315 CGGGGTCTGCTAGAGATGCT 61.112 60.000 0.00 0.00 31.63 3.79
4893 5542 1.365633 CGGGGTCTGCTAGAGATGC 59.634 63.158 0.00 0.00 31.63 3.91
4894 5543 1.365633 GCGGGGTCTGCTAGAGATG 59.634 63.158 0.00 0.00 31.63 2.90
4895 5544 0.470833 ATGCGGGGTCTGCTAGAGAT 60.471 55.000 0.00 0.00 31.63 2.75
4896 5545 0.185175 TATGCGGGGTCTGCTAGAGA 59.815 55.000 0.00 0.00 0.00 3.10
4897 5546 1.040646 TTATGCGGGGTCTGCTAGAG 58.959 55.000 0.00 0.00 0.00 2.43
4898 5547 0.750850 GTTATGCGGGGTCTGCTAGA 59.249 55.000 0.00 0.00 0.00 2.43
4899 5548 0.597637 CGTTATGCGGGGTCTGCTAG 60.598 60.000 0.30 0.00 36.85 3.42
4900 5549 1.440060 CGTTATGCGGGGTCTGCTA 59.560 57.895 0.30 0.00 36.85 3.49
4901 5550 2.186903 CGTTATGCGGGGTCTGCT 59.813 61.111 0.30 0.00 36.85 4.24
4902 5551 3.573491 GCGTTATGCGGGGTCTGC 61.573 66.667 0.00 0.00 41.69 4.26
4913 5562 3.961838 TTTGCGGGCCGAGCGTTAT 62.962 57.895 33.44 0.00 37.44 1.89
4914 5563 4.683721 TTTGCGGGCCGAGCGTTA 62.684 61.111 33.44 4.69 37.44 3.18
4917 5566 3.625082 AATTTTTGCGGGCCGAGCG 62.625 57.895 33.44 2.59 37.44 5.03
4918 5567 1.805539 GAATTTTTGCGGGCCGAGC 60.806 57.895 33.44 14.12 0.00 5.03
4919 5568 1.153842 GGAATTTTTGCGGGCCGAG 60.154 57.895 33.44 0.84 0.00 4.63
4920 5569 2.966590 GGAATTTTTGCGGGCCGA 59.033 55.556 33.44 12.50 0.00 5.54
4921 5570 2.505997 CGGAATTTTTGCGGGCCG 60.506 61.111 24.35 24.35 41.03 6.13
4927 5576 2.450160 CATACTCGCCGGAATTTTTGC 58.550 47.619 5.05 0.00 0.00 3.68
4928 5577 2.450160 GCATACTCGCCGGAATTTTTG 58.550 47.619 5.05 0.00 0.00 2.44
4929 5578 1.063469 CGCATACTCGCCGGAATTTTT 59.937 47.619 5.05 0.00 0.00 1.94
4930 5579 0.655733 CGCATACTCGCCGGAATTTT 59.344 50.000 5.05 0.00 0.00 1.82
4931 5580 1.157870 CCGCATACTCGCCGGAATTT 61.158 55.000 5.05 0.00 44.55 1.82
4932 5581 1.594293 CCGCATACTCGCCGGAATT 60.594 57.895 5.05 0.00 44.55 2.17
4933 5582 2.029073 CCGCATACTCGCCGGAAT 59.971 61.111 5.05 0.00 44.55 3.01
4934 5583 4.215742 CCCGCATACTCGCCGGAA 62.216 66.667 5.05 0.00 44.55 4.30
4941 5590 4.971125 GCCCGAGCCCGCATACTC 62.971 72.222 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.