Multiple sequence alignment - TraesCS2A01G423500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G423500 chr2A 100.000 6002 0 0 1 6002 678183486 678189487 0.000000e+00 11084.0
1 TraesCS2A01G423500 chr2A 85.106 94 12 2 5907 5998 62098517 62098424 1.780000e-15 95.3
2 TraesCS2A01G423500 chr2A 89.474 57 4 2 5922 5977 677479801 677479746 3.000000e-08 71.3
3 TraesCS2A01G423500 chr2D 92.255 5010 206 57 408 5370 534947268 534952142 0.000000e+00 6935.0
4 TraesCS2A01G423500 chr2D 87.625 299 29 8 5506 5798 534953696 534953992 2.070000e-89 340.0
5 TraesCS2A01G423500 chr2D 85.185 324 29 10 27 332 534946961 534947283 1.260000e-81 315.0
6 TraesCS2A01G423500 chr2D 92.537 134 5 2 5379 5510 534952611 534952741 2.860000e-43 187.0
7 TraesCS2A01G423500 chr2D 84.459 148 12 5 5866 6002 534954367 534954514 1.050000e-27 135.0
8 TraesCS2A01G423500 chr2D 74.144 263 40 15 5746 5984 55223293 55223035 3.850000e-12 84.2
9 TraesCS2A01G423500 chr2B 92.182 3057 137 45 2332 5325 636198561 636201578 0.000000e+00 4228.0
10 TraesCS2A01G423500 chr2B 90.293 1844 72 35 490 2299 636196788 636198558 0.000000e+00 2314.0
11 TraesCS2A01G423500 chr2B 84.713 157 17 5 2264 2420 636198656 636198805 3.750000e-32 150.0
12 TraesCS2A01G423500 chr7D 79.705 271 31 18 4443 4692 534458460 534458727 2.220000e-39 174.0
13 TraesCS2A01G423500 chr7B 79.699 266 35 10 4446 4692 107162942 107162677 2.220000e-39 174.0
14 TraesCS2A01G423500 chr7B 87.952 83 9 1 5917 5998 141014944 141014862 4.950000e-16 97.1
15 TraesCS2A01G423500 chr7B 91.304 46 4 0 13 58 219538102 219538057 5.020000e-06 63.9
16 TraesCS2A01G423500 chr3D 79.705 271 31 18 4443 4692 29209590 29209857 2.220000e-39 174.0
17 TraesCS2A01G423500 chr3D 79.026 267 33 17 4447 4692 595685550 595685814 1.730000e-35 161.0
18 TraesCS2A01G423500 chr4D 78.598 271 35 17 4443 4692 448167538 448167806 2.240000e-34 158.0
19 TraesCS2A01G423500 chr6B 78.388 273 33 18 4442 4692 653356213 653355945 2.900000e-33 154.0
20 TraesCS2A01G423500 chr5A 77.656 273 37 17 4443 4693 141066373 141066643 1.740000e-30 145.0
21 TraesCS2A01G423500 chr5D 80.745 161 15 9 5852 5998 43756717 43756559 1.770000e-20 111.0
22 TraesCS2A01G423500 chr7A 91.176 68 5 1 5922 5989 232381299 232381365 2.300000e-14 91.6
23 TraesCS2A01G423500 chr3B 87.324 71 8 1 5915 5984 822990128 822990198 4.990000e-11 80.5
24 TraesCS2A01G423500 chr4B 89.362 47 5 0 5680 5726 622278964 622278918 6.500000e-05 60.2
25 TraesCS2A01G423500 chr4B 86.538 52 6 1 4 54 456583329 456583380 8.400000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G423500 chr2A 678183486 678189487 6001 False 11084.000000 11084 100.000000 1 6002 1 chr2A.!!$F1 6001
1 TraesCS2A01G423500 chr2D 534946961 534954514 7553 False 1582.400000 6935 88.412200 27 6002 5 chr2D.!!$F1 5975
2 TraesCS2A01G423500 chr2B 636196788 636201578 4790 False 2230.666667 4228 89.062667 490 5325 3 chr2B.!!$F1 4835

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.032815 TGTCCGTCACAGATGCGAAA 59.967 50.000 0.00 0.00 0.00 3.46 F
653 687 0.392998 GCTCCGATCCAAAAGCCAGA 60.393 55.000 0.00 0.00 0.00 3.86 F
1953 2017 0.109723 AGCTGGCCGTTGTCCTTTTA 59.890 50.000 0.00 0.00 0.00 1.52 F
1962 2026 1.269723 GTTGTCCTTTTAGCTGGTGGC 59.730 52.381 0.00 0.00 42.19 5.01 F
3591 3692 0.674895 AGGACATGCGCTTTGAGGTC 60.675 55.000 9.73 5.21 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1881 1945 1.129058 ACCACCGTTCTTTGTCCTCT 58.871 50.000 0.0 0.0 0.00 3.69 R
2073 2137 1.677576 ACACACAAGGCACAACATGAG 59.322 47.619 0.0 0.0 0.00 2.90 R
3179 3271 0.601841 AAACTGTAACGTCCTGGCCG 60.602 55.000 0.0 0.0 0.00 6.13 R
3886 3992 1.052124 ACGGAAAGAGGTCCACCACA 61.052 55.000 0.0 0.0 37.56 4.17 R
5373 5508 0.254747 CTCTTCACCCCCGCCAATTA 59.745 55.000 0.0 0.0 0.00 1.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.361174 TGTCCGTCACAGATGCGA 58.639 55.556 0.00 0.00 0.00 5.10
22 23 1.663173 TGTCCGTCACAGATGCGAA 59.337 52.632 0.00 0.00 0.00 4.70
23 24 0.032815 TGTCCGTCACAGATGCGAAA 59.967 50.000 0.00 0.00 0.00 3.46
24 25 0.716108 GTCCGTCACAGATGCGAAAG 59.284 55.000 0.00 0.00 0.00 2.62
25 26 0.601057 TCCGTCACAGATGCGAAAGA 59.399 50.000 0.00 0.00 0.00 2.52
32 33 5.164254 CGTCACAGATGCGAAAGAAAATTTG 60.164 40.000 0.00 0.00 0.00 2.32
33 34 4.681025 TCACAGATGCGAAAGAAAATTTGC 59.319 37.500 0.00 0.00 39.66 3.68
37 38 1.067821 TGCGAAAGAAAATTTGCGGGT 59.932 42.857 0.00 0.00 41.69 5.28
39 40 3.243434 TGCGAAAGAAAATTTGCGGGTTA 60.243 39.130 0.00 0.00 41.69 2.85
41 42 3.671459 CGAAAGAAAATTTGCGGGTTACC 59.329 43.478 0.00 0.00 0.00 2.85
45 46 4.565022 AGAAAATTTGCGGGTTACCATTG 58.435 39.130 2.98 0.00 36.13 2.82
93 94 7.108194 ACACAGATGAGCTGAATAAAGATCAA 58.892 34.615 4.05 0.00 45.05 2.57
121 122 5.520376 AATATGCAGATTTGGGTTAGTGC 57.480 39.130 0.00 0.00 0.00 4.40
134 135 4.131596 GGGTTAGTGCTTAAATCCGCATA 58.868 43.478 0.00 0.00 38.56 3.14
138 139 4.085357 AGTGCTTAAATCCGCATATGGA 57.915 40.909 4.56 0.00 43.58 3.41
145 146 7.392953 TGCTTAAATCCGCATATGGAATTATGA 59.607 33.333 4.56 0.00 42.46 2.15
152 153 6.017192 TCCGCATATGGAATTATGACACAAAG 60.017 38.462 4.56 0.00 34.30 2.77
183 184 4.286297 CCTTCGGATGGGAATATAAGCA 57.714 45.455 2.05 0.00 0.00 3.91
188 190 3.084786 GGATGGGAATATAAGCAGGCAC 58.915 50.000 0.00 0.00 0.00 5.01
195 197 3.849563 ATATAAGCAGGCACGGGTTTA 57.150 42.857 0.00 0.00 42.23 2.01
204 206 3.133362 CAGGCACGGGTTTATAGGTCTTA 59.867 47.826 0.00 0.00 0.00 2.10
205 207 3.133542 AGGCACGGGTTTATAGGTCTTAC 59.866 47.826 0.00 0.00 0.00 2.34
216 218 8.558700 GGTTTATAGGTCTTACGTTTGACAAAA 58.441 33.333 18.00 11.34 35.11 2.44
217 219 9.934190 GTTTATAGGTCTTACGTTTGACAAAAA 57.066 29.630 18.00 11.10 35.11 1.94
229 231 7.138736 ACGTTTGACAAAAAGAATCAGTATGG 58.861 34.615 1.27 0.00 36.16 2.74
244 246 8.978874 AATCAGTATGGCATAAAACTACATGA 57.021 30.769 9.14 4.94 36.16 3.07
246 248 8.607441 TCAGTATGGCATAAAACTACATGATC 57.393 34.615 9.14 0.00 36.16 2.92
249 251 7.880195 AGTATGGCATAAAACTACATGATCCTC 59.120 37.037 9.14 0.00 0.00 3.71
251 253 5.104151 TGGCATAAAACTACATGATCCTCCA 60.104 40.000 0.00 0.00 0.00 3.86
253 255 6.491403 GGCATAAAACTACATGATCCTCCATT 59.509 38.462 0.00 0.00 0.00 3.16
258 260 5.815233 ACTACATGATCCTCCATTCGATT 57.185 39.130 0.00 0.00 0.00 3.34
267 269 6.875726 TGATCCTCCATTCGATTCAATACATC 59.124 38.462 0.00 0.00 0.00 3.06
276 290 6.934561 TCGATTCAATACATCTATTCAGCG 57.065 37.500 0.00 0.00 0.00 5.18
279 293 6.451700 CGATTCAATACATCTATTCAGCGACG 60.452 42.308 0.00 0.00 0.00 5.12
292 306 0.749454 AGCGACGAGTAATACGGGGT 60.749 55.000 0.00 0.00 34.93 4.95
322 341 6.140786 GGAGTAAGAAAATTCGTCCAACAAC 58.859 40.000 0.00 0.00 0.00 3.32
332 351 3.979948 TCGTCCAACAACGATTGTAGAA 58.020 40.909 0.00 0.00 46.02 2.10
333 352 3.737266 TCGTCCAACAACGATTGTAGAAC 59.263 43.478 0.00 0.00 46.02 3.01
334 353 3.120786 CGTCCAACAACGATTGTAGAACC 60.121 47.826 0.00 0.00 44.59 3.62
335 354 3.061322 TCCAACAACGATTGTAGAACCG 58.939 45.455 0.00 0.00 44.59 4.44
337 356 2.450609 ACAACGATTGTAGAACCGCT 57.549 45.000 0.00 0.00 43.27 5.52
341 360 2.762745 ACGATTGTAGAACCGCTTGTT 58.237 42.857 0.00 0.00 40.81 2.83
342 361 7.251079 ACAACGATTGTAGAACCGCTTGTTC 62.251 44.000 7.65 7.65 44.03 3.18
349 368 1.641577 GAACCGCTTGTTCGCTATCT 58.358 50.000 0.94 0.00 43.65 1.98
350 369 2.805845 GAACCGCTTGTTCGCTATCTA 58.194 47.619 0.94 0.00 43.65 1.98
351 370 2.953466 ACCGCTTGTTCGCTATCTAA 57.047 45.000 0.00 0.00 0.00 2.10
352 371 3.241067 ACCGCTTGTTCGCTATCTAAA 57.759 42.857 0.00 0.00 0.00 1.85
353 372 3.592059 ACCGCTTGTTCGCTATCTAAAA 58.408 40.909 0.00 0.00 0.00 1.52
354 373 3.998341 ACCGCTTGTTCGCTATCTAAAAA 59.002 39.130 0.00 0.00 0.00 1.94
394 413 1.641577 GAACCGCTTGTTCGCTATCT 58.358 50.000 0.94 0.00 43.65 1.98
395 414 1.588861 GAACCGCTTGTTCGCTATCTC 59.411 52.381 0.94 0.00 43.65 2.75
396 415 0.530744 ACCGCTTGTTCGCTATCTCA 59.469 50.000 0.00 0.00 0.00 3.27
397 416 1.067142 ACCGCTTGTTCGCTATCTCAA 60.067 47.619 0.00 0.00 0.00 3.02
398 417 1.999735 CCGCTTGTTCGCTATCTCAAA 59.000 47.619 0.00 0.00 0.00 2.69
399 418 2.415168 CCGCTTGTTCGCTATCTCAAAA 59.585 45.455 0.00 0.00 0.00 2.44
400 419 3.120338 CCGCTTGTTCGCTATCTCAAAAA 60.120 43.478 0.00 0.00 0.00 1.94
447 466 9.994432 GAGATATATGTATATTTTGTGGCAAGC 57.006 33.333 0.00 0.00 0.00 4.01
453 472 4.775058 ATATTTTGTGGCAAGCAACGTA 57.225 36.364 0.00 0.00 0.00 3.57
458 477 0.882927 GTGGCAAGCAACGTACTCCA 60.883 55.000 0.00 0.00 0.00 3.86
489 508 6.127054 TGCTAGTCAAATGCAGTAGATAACCT 60.127 38.462 0.00 0.00 32.55 3.50
492 511 9.469807 CTAGTCAAATGCAGTAGATAACCTAAG 57.530 37.037 0.00 0.00 0.00 2.18
613 637 1.823976 CGTAGCTTCCTCCCCCTTC 59.176 63.158 0.00 0.00 0.00 3.46
618 652 1.398234 CTTCCTCCCCCTTCCCTCT 59.602 63.158 0.00 0.00 0.00 3.69
626 660 0.981943 CCCCTTCCCTCTGTACGTTT 59.018 55.000 0.00 0.00 0.00 3.60
653 687 0.392998 GCTCCGATCCAAAAGCCAGA 60.393 55.000 0.00 0.00 0.00 3.86
760 803 4.475444 CCACGCCTCCCCTCCCTA 62.475 72.222 0.00 0.00 0.00 3.53
761 804 3.155167 CACGCCTCCCCTCCCTAC 61.155 72.222 0.00 0.00 0.00 3.18
762 805 4.477119 ACGCCTCCCCTCCCTACC 62.477 72.222 0.00 0.00 0.00 3.18
763 806 4.159108 CGCCTCCCCTCCCTACCT 62.159 72.222 0.00 0.00 0.00 3.08
764 807 2.775741 CGCCTCCCCTCCCTACCTA 61.776 68.421 0.00 0.00 0.00 3.08
765 808 1.152290 GCCTCCCCTCCCTACCTAC 60.152 68.421 0.00 0.00 0.00 3.18
766 809 1.153292 CCTCCCCTCCCTACCTACG 59.847 68.421 0.00 0.00 0.00 3.51
902 950 3.459965 CTGCTCCGCTCTGCCTCT 61.460 66.667 0.00 0.00 0.00 3.69
903 951 3.719883 CTGCTCCGCTCTGCCTCTG 62.720 68.421 0.00 0.00 0.00 3.35
918 966 2.436292 CTGCCTCTGCCTGCTCAC 60.436 66.667 0.00 0.00 36.33 3.51
932 980 1.144936 CTCACAATCTCCCTCGCCC 59.855 63.158 0.00 0.00 0.00 6.13
1187 1244 2.532465 ATCGAGGTGAGACCGACCGA 62.532 60.000 9.25 9.25 44.90 4.69
1189 1246 2.675772 AGGTGAGACCGACCGACC 60.676 66.667 0.00 0.00 44.90 4.79
1190 1247 4.112341 GGTGAGACCGACCGACCG 62.112 72.222 0.00 0.00 0.00 4.79
1191 1248 3.052082 GTGAGACCGACCGACCGA 61.052 66.667 0.00 0.00 0.00 4.69
1192 1249 3.052082 TGAGACCGACCGACCGAC 61.052 66.667 0.00 0.00 0.00 4.79
1193 1250 3.808656 GAGACCGACCGACCGACC 61.809 72.222 0.00 0.00 0.00 4.79
1212 1269 3.984193 GACCCCAATGCGCTGCTCT 62.984 63.158 9.73 0.00 0.00 4.09
1214 1271 2.768492 CCCCAATGCGCTGCTCTTC 61.768 63.158 9.73 0.00 0.00 2.87
1215 1272 2.768492 CCCAATGCGCTGCTCTTCC 61.768 63.158 9.73 0.00 0.00 3.46
1276 1334 0.881118 TTGCGCTGGGATTTCTGTTC 59.119 50.000 9.73 0.00 0.00 3.18
1277 1335 1.298157 TGCGCTGGGATTTCTGTTCG 61.298 55.000 9.73 0.00 0.00 3.95
1278 1336 1.425428 CGCTGGGATTTCTGTTCGC 59.575 57.895 0.00 0.00 0.00 4.70
1279 1337 1.425428 GCTGGGATTTCTGTTCGCG 59.575 57.895 0.00 0.00 0.00 5.87
1280 1338 1.425428 CTGGGATTTCTGTTCGCGC 59.575 57.895 0.00 0.00 0.00 6.86
1281 1339 2.296692 CTGGGATTTCTGTTCGCGCG 62.297 60.000 26.76 26.76 0.00 6.86
1282 1340 2.098233 GGGATTTCTGTTCGCGCGA 61.098 57.895 31.40 31.40 0.00 5.87
1283 1341 1.345176 GGATTTCTGTTCGCGCGAG 59.655 57.895 32.74 21.48 0.00 5.03
1284 1342 1.345176 GATTTCTGTTCGCGCGAGG 59.655 57.895 32.74 24.51 0.00 4.63
1285 1343 1.076533 GATTTCTGTTCGCGCGAGGA 61.077 55.000 32.74 26.23 0.00 3.71
1286 1344 1.078759 ATTTCTGTTCGCGCGAGGAG 61.079 55.000 32.74 28.69 0.00 3.69
1287 1345 4.778415 TCTGTTCGCGCGAGGAGC 62.778 66.667 32.74 22.53 43.95 4.70
1288 1346 4.785512 CTGTTCGCGCGAGGAGCT 62.786 66.667 32.74 0.00 45.59 4.09
1290 1348 4.778415 GTTCGCGCGAGGAGCTGA 62.778 66.667 32.74 13.79 45.59 4.26
1291 1349 3.826754 TTCGCGCGAGGAGCTGAT 61.827 61.111 32.74 0.00 45.59 2.90
1410 1469 5.739161 GTGTTGGAATTATGCTTGTCGATTC 59.261 40.000 0.00 0.00 0.00 2.52
1458 1517 4.321156 CGGAGCTGGTTTGATTTGATTTCA 60.321 41.667 0.00 0.00 0.00 2.69
1476 1535 2.771089 TCAAGTAGAAAGTGCTGCTGG 58.229 47.619 0.00 0.00 30.98 4.85
1489 1548 1.228831 TGCTGGGATTTGTGGGGTG 60.229 57.895 0.00 0.00 0.00 4.61
1507 1566 3.054065 GGGTGGAAGATGAGGATTTGAGT 60.054 47.826 0.00 0.00 0.00 3.41
1611 1670 2.166459 TGTTTGCCATTTTGACACCGAA 59.834 40.909 0.00 0.00 0.00 4.30
1632 1691 1.893137 TGAATACTGACGGAGCTGTGT 59.107 47.619 0.00 0.00 0.00 3.72
1644 1703 4.142447 ACGGAGCTGTGTGTACTAACTATG 60.142 45.833 0.00 0.00 0.00 2.23
1656 1715 7.392393 TGTGTACTAACTATGTTGCAGAGTCTA 59.608 37.037 0.00 0.00 34.68 2.59
1730 1789 6.183360 GGTCAGAGTTCCTTCATTTGAACAAA 60.183 38.462 2.48 2.48 42.57 2.83
1755 1814 3.626670 GCCATCATTCCAGTGAAGAAGAG 59.373 47.826 0.00 0.00 33.05 2.85
1756 1815 4.624843 GCCATCATTCCAGTGAAGAAGAGA 60.625 45.833 0.00 0.00 33.05 3.10
1786 1850 8.791327 TGTGTATCTTTGATCAGCATTCTTAA 57.209 30.769 0.00 0.00 0.00 1.85
1808 1872 4.890088 ACTAACGTGGTGATCTTGCTAAA 58.110 39.130 0.00 0.00 0.00 1.85
1953 2017 0.109723 AGCTGGCCGTTGTCCTTTTA 59.890 50.000 0.00 0.00 0.00 1.52
1962 2026 1.269723 GTTGTCCTTTTAGCTGGTGGC 59.730 52.381 0.00 0.00 42.19 5.01
2034 2098 1.593933 GTCTCTGTAGTCTCTACCGCG 59.406 57.143 0.00 0.00 0.00 6.46
2040 2104 1.334243 GTAGTCTCTACCGCGCATTCT 59.666 52.381 8.75 0.00 0.00 2.40
2051 2115 2.993220 CCGCGCATTCTGTAGCATTATA 59.007 45.455 8.75 0.00 0.00 0.98
2110 2174 1.684734 GTAGGGGACTCGGCTTGGA 60.685 63.158 0.00 0.00 43.67 3.53
2155 2219 4.278310 TCAGTAAGTCGATCCCATCTGAA 58.722 43.478 0.00 0.00 0.00 3.02
2300 2364 6.864685 CAGATTTCACATGCTGTAAATTGTGT 59.135 34.615 0.00 0.00 40.22 3.72
2319 2383 6.347859 TGTGTACATCACTGTTATACACCA 57.652 37.500 0.00 0.00 46.27 4.17
2442 2522 1.538047 AGCGGCAGATTTCACATGTT 58.462 45.000 1.45 0.00 0.00 2.71
2448 2528 6.039717 AGCGGCAGATTTCACATGTTATAAAT 59.960 34.615 1.45 2.90 0.00 1.40
2474 2554 6.180771 TGTACATCACTGTTATGCATTGTG 57.819 37.500 3.54 9.71 36.79 3.33
2539 2619 5.126061 GTGGCATCTTTGTTCATCCATACTT 59.874 40.000 0.00 0.00 0.00 2.24
2542 2622 6.032094 GCATCTTTGTTCATCCATACTTGTG 58.968 40.000 0.00 0.00 0.00 3.33
2568 2648 5.116074 GGAATTGCATTTCGCTGATAATTCG 59.884 40.000 13.59 0.00 43.06 3.34
2728 2808 7.094162 GCTGCTCAGTCCAGTGATAGTAATATA 60.094 40.741 0.00 0.00 32.93 0.86
2854 2941 2.311542 ACATAATGACCAGCCCCTTCAA 59.688 45.455 0.00 0.00 0.00 2.69
2931 3018 5.607477 CTGACCAGGTAAGAACAAGTACAA 58.393 41.667 0.00 0.00 0.00 2.41
2974 3061 5.927954 ATTCATGGCAATTCAACAAACAC 57.072 34.783 0.00 0.00 0.00 3.32
2986 3074 3.375610 TCAACAAACACGTGCATACTGTT 59.624 39.130 17.22 14.32 32.97 3.16
2992 3080 3.664107 ACACGTGCATACTGTTGAATCT 58.336 40.909 17.22 0.00 0.00 2.40
3114 3202 6.169094 CGATGGCAGATTTATTATGGAGACT 58.831 40.000 0.00 0.00 0.00 3.24
3134 3222 3.325716 ACTCCATACAAGGTACCGTGTTT 59.674 43.478 33.58 24.69 39.24 2.83
3179 3271 7.879677 TCATTCATGATCCATCTTACCATGTAC 59.120 37.037 0.00 0.00 36.79 2.90
3241 3338 7.004555 AGTTTTACTCATGGTGTGTGATCTA 57.995 36.000 0.00 0.00 0.00 1.98
3313 3410 4.746535 ATCTGCAATGCCAAATGATTGA 57.253 36.364 1.53 0.00 38.94 2.57
3460 3560 8.671987 ACCCACTATTAGATACTGATGCTTAT 57.328 34.615 0.00 0.00 0.00 1.73
3514 3614 4.299978 AGTCTAAGAAGTTGCTTGACGAC 58.700 43.478 0.00 0.00 34.30 4.34
3591 3692 0.674895 AGGACATGCGCTTTGAGGTC 60.675 55.000 9.73 5.21 0.00 3.85
3615 3716 1.002366 CTGATTTCCGCACCTTCTCG 58.998 55.000 0.00 0.00 0.00 4.04
3751 3853 4.785669 ATATCTTTCGAGCTCGCAAAAG 57.214 40.909 30.15 30.15 39.60 2.27
3763 3865 4.943705 AGCTCGCAAAAGGAAATTCTCATA 59.056 37.500 0.00 0.00 0.00 2.15
3775 3877 8.503458 AGGAAATTCTCATAGTTCATCACTTG 57.497 34.615 0.00 0.00 36.88 3.16
3776 3878 8.105829 AGGAAATTCTCATAGTTCATCACTTGT 58.894 33.333 0.00 0.00 36.88 3.16
3886 3992 6.605594 TGTTGGAGTATTTGTTCAAAGAGGTT 59.394 34.615 4.37 0.00 0.00 3.50
3963 4069 8.960591 ACTACTGAAATTAATCAATCAACAGGG 58.039 33.333 0.00 0.00 0.00 4.45
4027 4133 2.364317 TCGCTCCCTCCTTCCCTG 60.364 66.667 0.00 0.00 0.00 4.45
4039 4145 4.383552 CCTCCTTCCCTGAATAACTGTGAG 60.384 50.000 0.00 0.00 0.00 3.51
4040 4146 4.168101 TCCTTCCCTGAATAACTGTGAGT 58.832 43.478 0.00 0.00 0.00 3.41
4042 4148 4.223923 CCTTCCCTGAATAACTGTGAGTCT 59.776 45.833 0.00 0.00 0.00 3.24
4043 4149 4.808414 TCCCTGAATAACTGTGAGTCTG 57.192 45.455 0.00 0.00 0.00 3.51
4044 4150 4.160329 TCCCTGAATAACTGTGAGTCTGT 58.840 43.478 0.00 0.00 0.00 3.41
4045 4151 4.021104 TCCCTGAATAACTGTGAGTCTGTG 60.021 45.833 0.00 0.00 0.00 3.66
4046 4152 4.021104 CCCTGAATAACTGTGAGTCTGTGA 60.021 45.833 0.00 0.00 0.00 3.58
4047 4153 4.926238 CCTGAATAACTGTGAGTCTGTGAC 59.074 45.833 0.00 0.00 0.00 3.67
4048 4154 5.509670 CCTGAATAACTGTGAGTCTGTGACA 60.510 44.000 0.46 0.00 34.60 3.58
4049 4155 5.532557 TGAATAACTGTGAGTCTGTGACAG 58.467 41.667 6.18 6.18 42.39 3.51
4050 4156 5.301805 TGAATAACTGTGAGTCTGTGACAGA 59.698 40.000 11.93 11.93 39.64 3.41
4051 4157 5.991933 ATAACTGTGAGTCTGTGACAGAT 57.008 39.130 19.31 7.84 42.73 2.90
4052 4158 3.657015 ACTGTGAGTCTGTGACAGATG 57.343 47.619 19.31 7.64 42.73 2.90
4126 4233 7.428020 TCAGTTTGGAATTTCTGAATCAAGTG 58.572 34.615 0.00 0.00 34.61 3.16
4165 4272 2.545113 GGACAGCGTGTGAGTGTTTCTA 60.545 50.000 0.00 0.00 0.00 2.10
4212 4319 0.608130 AATTTTTGCGCCCTCTTCCC 59.392 50.000 4.18 0.00 0.00 3.97
4213 4320 0.251787 ATTTTTGCGCCCTCTTCCCT 60.252 50.000 4.18 0.00 0.00 4.20
4214 4321 0.893727 TTTTTGCGCCCTCTTCCCTC 60.894 55.000 4.18 0.00 0.00 4.30
4215 4322 2.063015 TTTTGCGCCCTCTTCCCTCA 62.063 55.000 4.18 0.00 0.00 3.86
4216 4323 2.063015 TTTGCGCCCTCTTCCCTCAA 62.063 55.000 4.18 0.00 0.00 3.02
4217 4324 1.852157 TTGCGCCCTCTTCCCTCAAT 61.852 55.000 4.18 0.00 0.00 2.57
4218 4325 0.980754 TGCGCCCTCTTCCCTCAATA 60.981 55.000 4.18 0.00 0.00 1.90
4219 4326 0.180406 GCGCCCTCTTCCCTCAATAA 59.820 55.000 0.00 0.00 0.00 1.40
4220 4327 1.954927 CGCCCTCTTCCCTCAATAAC 58.045 55.000 0.00 0.00 0.00 1.89
4221 4328 1.486726 CGCCCTCTTCCCTCAATAACT 59.513 52.381 0.00 0.00 0.00 2.24
4222 4329 2.483889 CGCCCTCTTCCCTCAATAACTC 60.484 54.545 0.00 0.00 0.00 3.01
4223 4330 2.774809 GCCCTCTTCCCTCAATAACTCT 59.225 50.000 0.00 0.00 0.00 3.24
4301 4413 7.182760 TCTTTCTGGGAGAGTGAGAGTTATAA 58.817 38.462 0.00 0.00 0.00 0.98
4335 4447 6.897413 TGTGATATAAGGATCTGCTAGGCATA 59.103 38.462 0.00 0.00 38.13 3.14
4394 4516 5.052172 GCATAAATTATGTTCTGTTGCAGCG 60.052 40.000 13.77 0.00 38.43 5.18
4523 4645 3.820557 CATTCAATTACTCCCCGTCCAT 58.179 45.455 0.00 0.00 0.00 3.41
4541 4663 4.338118 GTCCATGACACTTTTTGAGGTTCA 59.662 41.667 0.00 0.00 32.09 3.18
4562 4684 5.256474 TCAATTTCCATTCTGTTCCCTCTC 58.744 41.667 0.00 0.00 0.00 3.20
4570 4692 4.625607 TTCTGTTCCCTCTCCTTCTTTC 57.374 45.455 0.00 0.00 0.00 2.62
4613 4735 2.977772 AGCTTGAGATACTCACTGGC 57.022 50.000 0.74 6.68 40.46 4.85
4667 4789 4.670765 AGGAATTTGCTCCAGTGAAGAAT 58.329 39.130 0.00 0.00 38.02 2.40
4814 4936 1.289109 CCTCACGTTTGCCTGTACCG 61.289 60.000 0.00 0.00 0.00 4.02
4850 4973 5.565439 GCACTAAATCACAACTCAGGCATTT 60.565 40.000 0.00 0.00 0.00 2.32
4858 4981 3.953612 ACAACTCAGGCATTTCAAGACAA 59.046 39.130 0.00 0.00 0.00 3.18
4865 4988 4.741676 CAGGCATTTCAAGACAAAACAGAC 59.258 41.667 0.00 0.00 0.00 3.51
4879 5002 1.376086 CAGACTGTGATGGCCACCA 59.624 57.895 8.16 0.00 45.09 4.17
4986 5109 4.329545 ACATTCCACGCGCCCAGT 62.330 61.111 5.73 0.00 0.00 4.00
5008 5131 1.683917 AGATCTCGTTCTAGGCGCATT 59.316 47.619 10.83 0.00 0.00 3.56
5013 5136 0.096976 CGTTCTAGGCGCATTGGTTG 59.903 55.000 10.83 0.00 0.00 3.77
5044 5167 0.252479 AGCAGATGGAGGAAGCAGTG 59.748 55.000 0.00 0.00 0.00 3.66
5335 5470 3.010027 TCTGAACCCCATTTATCTGTGCA 59.990 43.478 0.00 0.00 0.00 4.57
5336 5471 3.088532 TGAACCCCATTTATCTGTGCAC 58.911 45.455 10.75 10.75 0.00 4.57
5337 5472 1.750193 ACCCCATTTATCTGTGCACG 58.250 50.000 13.13 7.36 0.00 5.34
5338 5473 0.381801 CCCCATTTATCTGTGCACGC 59.618 55.000 13.13 0.00 0.00 5.34
5339 5474 1.093972 CCCATTTATCTGTGCACGCA 58.906 50.000 13.13 0.42 0.00 5.24
5340 5475 1.064505 CCCATTTATCTGTGCACGCAG 59.935 52.381 13.13 5.07 37.81 5.18
5341 5476 1.532505 CCATTTATCTGTGCACGCAGC 60.533 52.381 13.13 0.00 45.96 5.25
5350 5485 2.047274 GCACGCAGCCTTGTCCTA 60.047 61.111 0.00 0.00 37.23 2.94
5358 5493 3.488047 CGCAGCCTTGTCCTATCAAATTG 60.488 47.826 0.00 0.00 0.00 2.32
5370 5505 5.104151 TCCTATCAAATTGCCTGGACACATA 60.104 40.000 0.00 0.00 0.00 2.29
5371 5506 5.771666 CCTATCAAATTGCCTGGACACATAT 59.228 40.000 0.00 0.00 0.00 1.78
5372 5507 6.942005 CCTATCAAATTGCCTGGACACATATA 59.058 38.462 0.00 0.00 0.00 0.86
5373 5508 7.613022 CCTATCAAATTGCCTGGACACATATAT 59.387 37.037 0.00 0.00 0.00 0.86
5374 5509 9.671279 CTATCAAATTGCCTGGACACATATATA 57.329 33.333 0.00 0.00 0.00 0.86
5375 5510 8.938801 ATCAAATTGCCTGGACACATATATAA 57.061 30.769 0.00 0.00 0.00 0.98
5376 5511 8.938801 TCAAATTGCCTGGACACATATATAAT 57.061 30.769 0.00 0.00 0.00 1.28
5377 5512 9.365906 TCAAATTGCCTGGACACATATATAATT 57.634 29.630 0.00 0.00 0.00 1.40
5380 5975 5.009631 TGCCTGGACACATATATAATTGGC 58.990 41.667 0.00 0.00 36.38 4.52
5385 5980 3.945285 GACACATATATAATTGGCGGGGG 59.055 47.826 0.00 0.00 0.00 5.40
5457 6052 1.766059 TGGCAGGCTATCCGGTCAT 60.766 57.895 0.00 0.00 37.24 3.06
5522 7078 0.679640 TCCTTAGGGCCAACAATGCG 60.680 55.000 6.18 0.00 0.00 4.73
5531 7087 1.459455 CCAACAATGCGGTCCACCAA 61.459 55.000 0.00 0.00 35.14 3.67
5532 7088 0.318614 CAACAATGCGGTCCACCAAC 60.319 55.000 0.00 0.00 35.14 3.77
5533 7089 0.753479 AACAATGCGGTCCACCAACA 60.753 50.000 0.00 0.00 35.14 3.33
5536 7092 4.920112 TGCGGTCCACCAACACGG 62.920 66.667 0.00 0.00 42.50 4.94
5537 7093 4.612412 GCGGTCCACCAACACGGA 62.612 66.667 0.00 0.00 38.63 4.69
5541 7097 2.506962 TCCACCAACACGGACACC 59.493 61.111 0.00 0.00 38.63 4.16
5543 7099 1.228124 CCACCAACACGGACACCAT 60.228 57.895 0.00 0.00 38.63 3.55
5544 7100 1.234615 CCACCAACACGGACACCATC 61.235 60.000 0.00 0.00 38.63 3.51
5546 7102 0.181587 ACCAACACGGACACCATCAA 59.818 50.000 0.00 0.00 38.63 2.57
5548 7104 1.885887 CCAACACGGACACCATCAAAT 59.114 47.619 0.00 0.00 36.56 2.32
5550 7106 2.270352 ACACGGACACCATCAAATGT 57.730 45.000 0.00 0.00 0.00 2.71
5551 7107 2.151202 ACACGGACACCATCAAATGTC 58.849 47.619 0.00 0.00 43.75 3.06
5556 7112 2.422597 GACACCATCAAATGTCCGTGA 58.577 47.619 0.00 0.00 39.49 4.35
5557 7113 2.811431 GACACCATCAAATGTCCGTGAA 59.189 45.455 0.00 0.00 39.49 3.18
5559 7115 2.551887 CACCATCAAATGTCCGTGAACA 59.448 45.455 0.00 0.00 0.00 3.18
5627 7188 3.181485 CCGGAGTCACTAAATGTCCTCTC 60.181 52.174 0.00 0.00 31.82 3.20
5636 7197 7.604164 GTCACTAAATGTCCTCTCATTTCTTGA 59.396 37.037 7.73 8.77 43.87 3.02
5648 7209 9.468532 CCTCTCATTTCTTGAAAAAGGTTAAAG 57.531 33.333 0.00 0.00 32.78 1.85
5669 7230 5.079689 AGAAAAACAAACCAAATGACCGT 57.920 34.783 0.00 0.00 0.00 4.83
5673 7234 3.208747 ACAAACCAAATGACCGTCTCT 57.791 42.857 0.00 0.00 0.00 3.10
5730 7291 7.330700 AGCAATTTAACCACACATTTAAATCCG 59.669 33.333 0.00 0.00 37.05 4.18
5732 7293 8.643752 CAATTTAACCACACATTTAAATCCGAC 58.356 33.333 0.00 0.00 37.05 4.79
5741 7302 5.856455 CACATTTAAATCCGACAAACACTCC 59.144 40.000 0.00 0.00 0.00 3.85
5742 7303 5.768164 ACATTTAAATCCGACAAACACTCCT 59.232 36.000 0.00 0.00 0.00 3.69
5745 7306 3.485463 AATCCGACAAACACTCCTTGA 57.515 42.857 0.00 0.00 0.00 3.02
5751 7312 4.319766 CCGACAAACACTCCTTGAAAGATG 60.320 45.833 0.00 0.00 0.00 2.90
5771 7332 7.914537 AGATGTTCGACAAGTTTTTCAATTC 57.085 32.000 0.00 0.00 0.00 2.17
5785 7346 6.543430 TTTTCAATTCCATCGATCCCAAAT 57.457 33.333 0.00 0.00 0.00 2.32
5798 7359 1.835531 TCCCAAATACTCCCTTCGTCC 59.164 52.381 0.00 0.00 0.00 4.79
5799 7360 1.838077 CCCAAATACTCCCTTCGTCCT 59.162 52.381 0.00 0.00 0.00 3.85
5800 7361 2.238898 CCCAAATACTCCCTTCGTCCTT 59.761 50.000 0.00 0.00 0.00 3.36
5801 7362 3.532542 CCAAATACTCCCTTCGTCCTTC 58.467 50.000 0.00 0.00 0.00 3.46
5802 7363 3.532542 CAAATACTCCCTTCGTCCTTCC 58.467 50.000 0.00 0.00 0.00 3.46
5803 7364 2.850695 ATACTCCCTTCGTCCTTCCT 57.149 50.000 0.00 0.00 0.00 3.36
5809 7370 1.351350 CCCTTCGTCCTTCCTTTCCTT 59.649 52.381 0.00 0.00 0.00 3.36
5811 7372 2.814336 CCTTCGTCCTTCCTTTCCTTTG 59.186 50.000 0.00 0.00 0.00 2.77
5812 7373 3.496160 CCTTCGTCCTTCCTTTCCTTTGA 60.496 47.826 0.00 0.00 0.00 2.69
5813 7374 3.402628 TCGTCCTTCCTTTCCTTTGAG 57.597 47.619 0.00 0.00 0.00 3.02
5814 7375 2.704065 TCGTCCTTCCTTTCCTTTGAGT 59.296 45.455 0.00 0.00 0.00 3.41
5816 7377 3.883489 CGTCCTTCCTTTCCTTTGAGTTT 59.117 43.478 0.00 0.00 0.00 2.66
5817 7378 4.261197 CGTCCTTCCTTTCCTTTGAGTTTG 60.261 45.833 0.00 0.00 0.00 2.93
5818 7379 4.887655 GTCCTTCCTTTCCTTTGAGTTTGA 59.112 41.667 0.00 0.00 0.00 2.69
5819 7380 5.359860 GTCCTTCCTTTCCTTTGAGTTTGAA 59.640 40.000 0.00 0.00 0.00 2.69
5821 7382 5.360999 CCTTCCTTTCCTTTGAGTTTGAACT 59.639 40.000 0.00 0.00 43.16 3.01
5822 7383 6.127338 CCTTCCTTTCCTTTGAGTTTGAACTT 60.127 38.462 0.00 0.00 39.88 2.66
5823 7384 6.451064 TCCTTTCCTTTGAGTTTGAACTTC 57.549 37.500 0.00 0.00 39.88 3.01
5824 7385 6.187682 TCCTTTCCTTTGAGTTTGAACTTCT 58.812 36.000 0.00 0.00 39.88 2.85
5825 7386 6.663523 TCCTTTCCTTTGAGTTTGAACTTCTT 59.336 34.615 0.00 0.00 39.88 2.52
5826 7387 6.975197 CCTTTCCTTTGAGTTTGAACTTCTTC 59.025 38.462 0.00 0.00 39.88 2.87
5828 7389 6.436843 TCCTTTGAGTTTGAACTTCTTCAC 57.563 37.500 0.00 0.00 39.88 3.18
5829 7390 5.943416 TCCTTTGAGTTTGAACTTCTTCACA 59.057 36.000 0.00 0.00 39.88 3.58
5831 7392 6.694411 CCTTTGAGTTTGAACTTCTTCACATG 59.306 38.462 0.00 0.00 39.88 3.21
5833 7394 7.857734 TTGAGTTTGAACTTCTTCACATGTA 57.142 32.000 0.00 0.00 39.88 2.29
5834 7395 7.857734 TGAGTTTGAACTTCTTCACATGTAA 57.142 32.000 0.00 0.00 39.88 2.41
5837 7398 9.387123 GAGTTTGAACTTCTTCACATGTAATTC 57.613 33.333 0.00 0.00 39.88 2.17
5839 7400 9.173939 GTTTGAACTTCTTCACATGTAATTCAG 57.826 33.333 0.00 0.00 36.06 3.02
5840 7401 8.450578 TTGAACTTCTTCACATGTAATTCAGT 57.549 30.769 0.00 0.00 36.06 3.41
5841 7402 8.450578 TGAACTTCTTCACATGTAATTCAGTT 57.549 30.769 0.00 4.86 31.00 3.16
5845 7406 8.993121 ACTTCTTCACATGTAATTCAGTTAGTG 58.007 33.333 0.00 0.00 0.00 2.74
5846 7407 8.902540 TTCTTCACATGTAATTCAGTTAGTGT 57.097 30.769 0.00 0.00 0.00 3.55
5847 7408 8.310406 TCTTCACATGTAATTCAGTTAGTGTG 57.690 34.615 0.00 0.00 39.30 3.82
5848 7409 6.480524 TCACATGTAATTCAGTTAGTGTGC 57.519 37.500 0.00 0.00 38.60 4.57
5850 7411 4.700213 ACATGTAATTCAGTTAGTGTGCCC 59.300 41.667 0.00 0.00 0.00 5.36
5851 7412 4.359434 TGTAATTCAGTTAGTGTGCCCA 57.641 40.909 0.00 0.00 0.00 5.36
5852 7413 4.917385 TGTAATTCAGTTAGTGTGCCCAT 58.083 39.130 0.00 0.00 0.00 4.00
5854 7415 4.789012 AATTCAGTTAGTGTGCCCATTG 57.211 40.909 0.00 0.00 0.00 2.82
5855 7416 3.500448 TTCAGTTAGTGTGCCCATTGA 57.500 42.857 0.00 0.00 0.00 2.57
5856 7417 3.057969 TCAGTTAGTGTGCCCATTGAG 57.942 47.619 0.00 0.00 0.00 3.02
5857 7418 1.470098 CAGTTAGTGTGCCCATTGAGC 59.530 52.381 0.00 0.00 0.00 4.26
5859 7420 2.162681 GTTAGTGTGCCCATTGAGCTT 58.837 47.619 0.00 0.00 0.00 3.74
5860 7421 2.558359 GTTAGTGTGCCCATTGAGCTTT 59.442 45.455 0.00 0.00 0.00 3.51
5861 7422 2.584835 AGTGTGCCCATTGAGCTTTA 57.415 45.000 0.00 0.00 0.00 1.85
5863 7424 3.434309 AGTGTGCCCATTGAGCTTTATT 58.566 40.909 0.00 0.00 0.00 1.40
5864 7425 3.445096 AGTGTGCCCATTGAGCTTTATTC 59.555 43.478 0.00 0.00 0.00 1.75
5875 7743 7.254319 CCATTGAGCTTTATTCAACAATGCATC 60.254 37.037 0.00 0.00 41.40 3.91
5896 7764 3.423154 GCGAAGGGGTTGCACTCG 61.423 66.667 0.00 0.00 36.53 4.18
5899 7768 1.371558 GAAGGGGTTGCACTCGTCT 59.628 57.895 0.00 0.00 0.00 4.18
5915 7794 1.862201 CGTCTTTGGTAGAACGTGCAA 59.138 47.619 0.00 0.00 33.81 4.08
5939 7818 5.123502 AGCTAGCAATGAAGTGATCAACAAG 59.876 40.000 18.83 0.00 42.54 3.16
5993 7872 2.029020 ACACATAGAGCAGCAAGAACGA 60.029 45.455 0.00 0.00 0.00 3.85
5998 7877 2.288666 AGAGCAGCAAGAACGAAAACA 58.711 42.857 0.00 0.00 0.00 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 0.032815 TTTCGCATCTGTGACGGACA 59.967 50.000 0.00 0.00 33.83 4.02
5 6 0.716108 CTTTCGCATCTGTGACGGAC 59.284 55.000 0.00 0.00 33.83 4.79
6 7 0.601057 TCTTTCGCATCTGTGACGGA 59.399 50.000 0.00 0.00 33.83 4.69
7 8 1.428448 TTCTTTCGCATCTGTGACGG 58.572 50.000 0.00 0.00 33.83 4.79
8 9 3.519908 TTTTCTTTCGCATCTGTGACG 57.480 42.857 0.00 0.00 33.83 4.35
9 10 5.387752 GCAAATTTTCTTTCGCATCTGTGAC 60.388 40.000 0.00 0.00 33.83 3.67
10 11 4.681025 GCAAATTTTCTTTCGCATCTGTGA 59.319 37.500 0.00 0.00 0.00 3.58
11 12 4.431986 CGCAAATTTTCTTTCGCATCTGTG 60.432 41.667 0.00 0.00 0.00 3.66
12 13 3.670055 CGCAAATTTTCTTTCGCATCTGT 59.330 39.130 0.00 0.00 0.00 3.41
13 14 3.059834 CCGCAAATTTTCTTTCGCATCTG 59.940 43.478 0.00 0.00 0.00 2.90
14 15 3.244976 CCGCAAATTTTCTTTCGCATCT 58.755 40.909 0.00 0.00 0.00 2.90
15 16 2.345341 CCCGCAAATTTTCTTTCGCATC 59.655 45.455 0.00 0.00 0.00 3.91
16 17 2.288763 ACCCGCAAATTTTCTTTCGCAT 60.289 40.909 0.00 0.00 0.00 4.73
17 18 1.067821 ACCCGCAAATTTTCTTTCGCA 59.932 42.857 0.00 0.00 0.00 5.10
18 19 1.778334 ACCCGCAAATTTTCTTTCGC 58.222 45.000 0.00 0.00 0.00 4.70
19 20 3.671459 GGTAACCCGCAAATTTTCTTTCG 59.329 43.478 0.00 0.00 0.00 3.46
20 21 4.623002 TGGTAACCCGCAAATTTTCTTTC 58.377 39.130 0.00 0.00 0.00 2.62
21 22 4.674281 TGGTAACCCGCAAATTTTCTTT 57.326 36.364 0.00 0.00 0.00 2.52
22 23 4.882842 ATGGTAACCCGCAAATTTTCTT 57.117 36.364 0.00 0.00 0.00 2.52
23 24 4.282195 TCAATGGTAACCCGCAAATTTTCT 59.718 37.500 0.00 0.00 0.00 2.52
24 25 4.561105 TCAATGGTAACCCGCAAATTTTC 58.439 39.130 0.00 0.00 0.00 2.29
25 26 4.608948 TCAATGGTAACCCGCAAATTTT 57.391 36.364 0.00 0.00 0.00 1.82
32 33 1.065551 GCATCTTCAATGGTAACCCGC 59.934 52.381 0.00 0.00 0.00 6.13
33 34 1.676006 GGCATCTTCAATGGTAACCCG 59.324 52.381 0.00 0.00 0.00 5.28
37 38 4.947388 GTGTAAGGGCATCTTCAATGGTAA 59.053 41.667 0.00 0.00 36.93 2.85
39 40 3.245229 TGTGTAAGGGCATCTTCAATGGT 60.245 43.478 0.00 0.00 36.93 3.55
41 42 4.400251 ACATGTGTAAGGGCATCTTCAATG 59.600 41.667 0.00 0.00 36.93 2.82
45 46 6.765989 TGTATTACATGTGTAAGGGCATCTTC 59.234 38.462 9.11 0.00 42.94 2.87
93 94 6.610075 AACCCAAATCTGCATATTTCTTGT 57.390 33.333 7.06 3.07 0.00 3.16
107 108 5.578776 CGGATTTAAGCACTAACCCAAATC 58.421 41.667 0.00 0.00 33.62 2.17
121 122 8.729756 TGTCATAATTCCATATGCGGATTTAAG 58.270 33.333 0.00 0.00 35.56 1.85
134 135 7.667219 AGTGTCTTCTTTGTGTCATAATTCCAT 59.333 33.333 0.00 0.00 0.00 3.41
138 139 6.431234 GGGAGTGTCTTCTTTGTGTCATAATT 59.569 38.462 0.00 0.00 0.00 1.40
145 146 3.741388 CGAAGGGAGTGTCTTCTTTGTGT 60.741 47.826 0.00 0.00 38.66 3.72
183 184 1.875488 AGACCTATAAACCCGTGCCT 58.125 50.000 0.00 0.00 0.00 4.75
188 190 5.289434 GTCAAACGTAAGACCTATAAACCCG 59.711 44.000 8.65 0.00 43.62 5.28
195 197 8.441312 TTCTTTTTGTCAAACGTAAGACCTAT 57.559 30.769 15.20 0.00 43.62 2.57
204 206 7.138736 CCATACTGATTCTTTTTGTCAAACGT 58.861 34.615 0.00 0.00 0.00 3.99
205 207 6.088085 GCCATACTGATTCTTTTTGTCAAACG 59.912 38.462 0.00 0.00 0.00 3.60
216 218 9.632638 ATGTAGTTTTATGCCATACTGATTCTT 57.367 29.630 0.00 0.00 0.00 2.52
217 219 9.060347 CATGTAGTTTTATGCCATACTGATTCT 57.940 33.333 0.00 0.00 0.00 2.40
229 231 7.516198 AATGGAGGATCATGTAGTTTTATGC 57.484 36.000 0.00 0.00 36.25 3.14
244 246 7.013823 AGATGTATTGAATCGAATGGAGGAT 57.986 36.000 0.00 0.00 0.00 3.24
246 248 8.783833 AATAGATGTATTGAATCGAATGGAGG 57.216 34.615 0.00 0.00 0.00 4.30
249 251 8.173775 GCTGAATAGATGTATTGAATCGAATGG 58.826 37.037 0.00 0.00 0.00 3.16
251 253 7.814587 TCGCTGAATAGATGTATTGAATCGAAT 59.185 33.333 0.00 0.00 0.00 3.34
253 255 6.582672 GTCGCTGAATAGATGTATTGAATCGA 59.417 38.462 0.00 1.68 0.00 3.59
258 260 5.008712 ACTCGTCGCTGAATAGATGTATTGA 59.991 40.000 0.00 0.00 0.00 2.57
267 269 4.149617 CCGTATTACTCGTCGCTGAATAG 58.850 47.826 0.00 0.00 0.00 1.73
276 290 0.308993 CCGACCCCGTATTACTCGTC 59.691 60.000 0.00 0.74 0.00 4.20
279 293 0.957362 CCTCCGACCCCGTATTACTC 59.043 60.000 0.00 0.00 0.00 2.59
292 306 3.512724 ACGAATTTTCTTACTCCCTCCGA 59.487 43.478 0.00 0.00 0.00 4.55
332 351 2.953466 TTAGATAGCGAACAAGCGGT 57.047 45.000 0.00 0.00 44.84 5.68
333 352 4.593597 TTTTTAGATAGCGAACAAGCGG 57.406 40.909 0.00 0.00 43.00 5.52
376 395 1.067142 TGAGATAGCGAACAAGCGGTT 60.067 47.619 0.00 0.00 44.10 4.44
377 396 0.530744 TGAGATAGCGAACAAGCGGT 59.469 50.000 0.00 0.00 44.84 5.68
378 397 1.640428 TTGAGATAGCGAACAAGCGG 58.360 50.000 0.00 0.00 43.00 5.52
379 398 3.722555 TTTTGAGATAGCGAACAAGCG 57.277 42.857 0.00 0.00 43.00 4.68
421 440 9.994432 GCTTGCCACAAAATATACATATATCTC 57.006 33.333 0.00 0.00 0.00 2.75
422 441 9.519191 TGCTTGCCACAAAATATACATATATCT 57.481 29.630 0.00 0.00 0.00 1.98
424 443 9.912634 GTTGCTTGCCACAAAATATACATATAT 57.087 29.630 0.00 0.00 0.00 0.86
425 444 8.073167 CGTTGCTTGCCACAAAATATACATATA 58.927 33.333 0.00 0.00 0.00 0.86
426 445 6.917477 CGTTGCTTGCCACAAAATATACATAT 59.083 34.615 0.00 0.00 0.00 1.78
427 446 6.127869 ACGTTGCTTGCCACAAAATATACATA 60.128 34.615 0.00 0.00 0.00 2.29
428 447 5.101628 CGTTGCTTGCCACAAAATATACAT 58.898 37.500 0.00 0.00 0.00 2.29
429 448 4.022762 ACGTTGCTTGCCACAAAATATACA 60.023 37.500 0.00 0.00 0.00 2.29
430 449 4.481463 ACGTTGCTTGCCACAAAATATAC 58.519 39.130 0.00 0.00 0.00 1.47
431 450 4.775058 ACGTTGCTTGCCACAAAATATA 57.225 36.364 0.00 0.00 0.00 0.86
432 451 3.658757 ACGTTGCTTGCCACAAAATAT 57.341 38.095 0.00 0.00 0.00 1.28
433 452 3.566322 AGTACGTTGCTTGCCACAAAATA 59.434 39.130 0.00 0.00 0.00 1.40
434 453 2.360801 AGTACGTTGCTTGCCACAAAAT 59.639 40.909 0.00 0.00 0.00 1.82
447 466 6.533723 TGACTAGCAAAATATGGAGTACGTTG 59.466 38.462 0.00 0.00 0.00 4.10
514 533 6.291377 TGGCTCATAATTTTACTGCCTCTAG 58.709 40.000 0.00 0.00 39.57 2.43
521 540 9.941664 CAATCTACTTGGCTCATAATTTTACTG 57.058 33.333 0.00 0.00 0.00 2.74
604 628 1.043673 CGTACAGAGGGAAGGGGGAG 61.044 65.000 0.00 0.00 0.00 4.30
611 635 2.215196 GTTGCAAACGTACAGAGGGAA 58.785 47.619 0.00 0.00 36.92 3.97
653 687 2.644212 CGCTGCAGGTGTCTCCTCT 61.644 63.158 17.12 0.00 46.24 3.69
749 792 1.531128 GCGTAGGTAGGGAGGGGAG 60.531 68.421 0.00 0.00 0.00 4.30
750 793 2.605299 GCGTAGGTAGGGAGGGGA 59.395 66.667 0.00 0.00 0.00 4.81
751 794 1.723128 TAGGCGTAGGTAGGGAGGGG 61.723 65.000 0.00 0.00 0.00 4.79
752 795 0.539207 GTAGGCGTAGGTAGGGAGGG 60.539 65.000 0.00 0.00 0.00 4.30
753 796 0.888285 CGTAGGCGTAGGTAGGGAGG 60.888 65.000 0.00 0.00 0.00 4.30
754 797 1.513836 GCGTAGGCGTAGGTAGGGAG 61.514 65.000 7.83 0.00 40.81 4.30
755 798 1.526917 GCGTAGGCGTAGGTAGGGA 60.527 63.158 7.83 0.00 40.81 4.20
756 799 3.037428 GCGTAGGCGTAGGTAGGG 58.963 66.667 7.83 0.00 40.81 3.53
898 946 3.388703 GAGCAGGCAGAGGCAGAGG 62.389 68.421 0.00 0.00 43.71 3.69
899 947 2.187424 GAGCAGGCAGAGGCAGAG 59.813 66.667 0.00 0.00 43.71 3.35
900 948 2.605601 TGAGCAGGCAGAGGCAGA 60.606 61.111 0.00 0.00 43.71 4.26
901 949 2.436292 GTGAGCAGGCAGAGGCAG 60.436 66.667 0.00 0.00 43.71 4.85
902 950 2.133359 ATTGTGAGCAGGCAGAGGCA 62.133 55.000 0.00 0.00 43.71 4.75
903 951 1.375098 GATTGTGAGCAGGCAGAGGC 61.375 60.000 0.00 0.00 40.13 4.70
918 966 4.918201 GCGGGGCGAGGGAGATTG 62.918 72.222 0.00 0.00 0.00 2.67
955 1003 3.741476 GCACAAGAAGCGGCAGGG 61.741 66.667 1.45 0.00 0.00 4.45
956 1004 2.670934 AGCACAAGAAGCGGCAGG 60.671 61.111 1.45 0.00 37.01 4.85
957 1005 2.559840 CAGCACAAGAAGCGGCAG 59.440 61.111 1.45 0.00 37.01 4.85
960 1008 4.093952 CGGCAGCACAAGAAGCGG 62.094 66.667 0.00 0.00 37.01 5.52
961 1009 4.748679 GCGGCAGCACAAGAAGCG 62.749 66.667 3.18 0.00 44.35 4.68
987 1035 1.133637 TCCTTCATCTCCTCCTCCTCG 60.134 57.143 0.00 0.00 0.00 4.63
988 1036 2.176798 TCTCCTTCATCTCCTCCTCCTC 59.823 54.545 0.00 0.00 0.00 3.71
989 1037 2.222271 TCTCCTTCATCTCCTCCTCCT 58.778 52.381 0.00 0.00 0.00 3.69
1187 1244 4.404098 GCATTGGGGTCGGTCGGT 62.404 66.667 0.00 0.00 0.00 4.69
1190 1247 4.778143 AGCGCATTGGGGTCGGTC 62.778 66.667 11.47 0.00 0.00 4.79
1194 1251 3.512516 GAGCAGCGCATTGGGGTC 61.513 66.667 11.47 4.81 0.00 4.46
1195 1252 3.574074 AAGAGCAGCGCATTGGGGT 62.574 57.895 11.47 0.00 0.00 4.95
1226 1284 3.226537 GGCCATGAAATCCCGCCC 61.227 66.667 0.00 0.00 33.30 6.13
1276 1334 3.326210 GAATCAGCTCCTCGCGCG 61.326 66.667 26.76 26.76 45.59 6.86
1277 1335 2.964389 GGAATCAGCTCCTCGCGC 60.964 66.667 0.00 0.00 45.59 6.86
1278 1336 2.811101 AGGAATCAGCTCCTCGCG 59.189 61.111 0.00 0.00 42.53 5.87
1283 1341 2.964389 GCGCGAGGAATCAGCTCC 60.964 66.667 12.10 0.00 35.51 4.70
1284 1342 2.202797 TGCGCGAGGAATCAGCTC 60.203 61.111 12.10 0.00 0.00 4.09
1285 1343 2.202851 CTGCGCGAGGAATCAGCT 60.203 61.111 12.10 0.00 0.00 4.24
1286 1344 3.267860 CCTGCGCGAGGAATCAGC 61.268 66.667 12.10 0.00 46.33 4.26
1287 1345 2.587194 CCCTGCGCGAGGAATCAG 60.587 66.667 22.49 12.84 46.33 2.90
1288 1346 3.074369 TCCCTGCGCGAGGAATCA 61.074 61.111 22.49 4.16 46.33 2.57
1289 1347 2.586357 GTCCCTGCGCGAGGAATC 60.586 66.667 22.49 8.50 46.33 2.52
1290 1348 3.077556 AGTCCCTGCGCGAGGAAT 61.078 61.111 22.49 17.79 46.33 3.01
1291 1349 4.069232 CAGTCCCTGCGCGAGGAA 62.069 66.667 22.49 4.26 46.33 3.36
1306 1364 4.058797 AAAAACCTCCGCCGACAG 57.941 55.556 0.00 0.00 0.00 3.51
1332 1391 2.678336 CCCGATGCAGAAAGTAACTTCC 59.322 50.000 0.00 0.00 0.00 3.46
1333 1392 3.596214 TCCCGATGCAGAAAGTAACTTC 58.404 45.455 0.00 0.00 0.00 3.01
1410 1469 2.046314 AATTCCAGCCCACGACCG 60.046 61.111 0.00 0.00 0.00 4.79
1444 1503 9.248291 GCACTTTCTACTTGAAATCAAATCAAA 57.752 29.630 0.00 0.00 42.96 2.69
1458 1517 1.699634 TCCCAGCAGCACTTTCTACTT 59.300 47.619 0.00 0.00 0.00 2.24
1476 1535 2.102578 CATCTTCCACCCCACAAATCC 58.897 52.381 0.00 0.00 0.00 3.01
1489 1548 5.028549 TGCTACTCAAATCCTCATCTTCC 57.971 43.478 0.00 0.00 0.00 3.46
1507 1566 6.038603 GCAACTGATGGAGATTTACATTGCTA 59.961 38.462 0.00 0.00 29.23 3.49
1611 1670 2.497675 ACACAGCTCCGTCAGTATTCAT 59.502 45.455 0.00 0.00 0.00 2.57
1632 1691 6.835819 AGACTCTGCAACATAGTTAGTACA 57.164 37.500 0.00 0.00 0.00 2.90
1644 1703 4.987832 TCGAAAGATCTAGACTCTGCAAC 58.012 43.478 0.00 0.00 33.31 4.17
1656 1715 2.101582 CCGGTCAATCCTCGAAAGATCT 59.898 50.000 0.00 0.00 40.84 2.75
1730 1789 3.972133 TCTTCACTGGAATGATGGCAAT 58.028 40.909 0.00 0.00 31.34 3.56
1755 1814 6.845302 TGCTGATCAAAGATACACATTGTTC 58.155 36.000 0.00 0.00 31.03 3.18
1756 1815 6.822667 TGCTGATCAAAGATACACATTGTT 57.177 33.333 0.00 0.00 0.00 2.83
1786 1850 4.530710 TTAGCAAGATCACCACGTTAGT 57.469 40.909 0.00 0.00 0.00 2.24
1791 1855 2.805671 TGTGTTTAGCAAGATCACCACG 59.194 45.455 0.00 0.00 0.00 4.94
1808 1872 1.680522 CGCCAGATAGCCTCCTGTGT 61.681 60.000 0.00 0.00 0.00 3.72
1881 1945 1.129058 ACCACCGTTCTTTGTCCTCT 58.871 50.000 0.00 0.00 0.00 3.69
1962 2026 9.401058 GGGATTATATTTCATGAGATTACCTGG 57.599 37.037 3.78 0.00 0.00 4.45
2065 2129 5.159209 CAAGGCACAACATGAGAAGAAATC 58.841 41.667 0.00 0.00 0.00 2.17
2073 2137 1.677576 ACACACAAGGCACAACATGAG 59.322 47.619 0.00 0.00 0.00 2.90
2076 2140 2.229792 CCTACACACAAGGCACAACAT 58.770 47.619 0.00 0.00 0.00 2.71
2110 2174 2.122768 CACCCCTTAGGATCTGAGCTT 58.877 52.381 0.00 0.00 39.89 3.74
2155 2219 7.042335 GCAGTCAACTACTAACATACAAGGAT 58.958 38.462 0.00 0.00 35.76 3.24
2241 2305 8.303876 GGAATAAAGAATTGTGCCAAGAACTAA 58.696 33.333 0.00 0.00 0.00 2.24
2332 2396 7.231467 ACAGTAAGTACATCCAATCACCTTTT 58.769 34.615 0.00 0.00 0.00 2.27
2333 2397 6.779860 ACAGTAAGTACATCCAATCACCTTT 58.220 36.000 0.00 0.00 0.00 3.11
2334 2398 6.374417 ACAGTAAGTACATCCAATCACCTT 57.626 37.500 0.00 0.00 0.00 3.50
2335 2399 7.202011 GGATACAGTAAGTACATCCAATCACCT 60.202 40.741 0.00 0.00 33.74 4.00
2336 2400 6.929606 GGATACAGTAAGTACATCCAATCACC 59.070 42.308 0.00 0.00 33.74 4.02
2337 2401 7.497595 TGGATACAGTAAGTACATCCAATCAC 58.502 38.462 6.40 0.00 46.17 3.06
2338 2402 7.669089 TGGATACAGTAAGTACATCCAATCA 57.331 36.000 6.40 0.00 46.17 2.57
2407 2487 2.417933 GCCGCTATGGAATTATCAGCAG 59.582 50.000 0.00 0.00 42.00 4.24
2474 2554 5.420104 ACATCCATTTCCTTTTGATCAGGAC 59.580 40.000 1.74 0.00 40.37 3.85
2539 2619 2.063156 GCGAAATGCAATTCCACACA 57.937 45.000 8.90 0.00 45.45 3.72
2584 2664 9.073368 GTCAAGAGAAAATCACAATGATCAATG 57.927 33.333 9.28 9.28 35.76 2.82
2728 2808 8.546597 ACAAAGAAAAATTTACAAGCTTGTGT 57.453 26.923 36.50 21.64 42.31 3.72
2741 2828 7.105588 AGTGAAGCAAAGGACAAAGAAAAATT 58.894 30.769 0.00 0.00 0.00 1.82
2854 2941 1.507562 TTTGCGTGTGACATCATCGT 58.492 45.000 0.00 0.00 0.00 3.73
2931 3018 8.545229 TGAATATTCAATGCAACGGAAAATTT 57.455 26.923 15.82 0.00 33.55 1.82
2974 3061 7.700322 ACTATTAGATTCAACAGTATGCACG 57.300 36.000 0.00 0.00 42.53 5.34
3114 3202 3.324268 TGAAACACGGTACCTTGTATGGA 59.676 43.478 23.08 6.44 0.00 3.41
3179 3271 0.601841 AAACTGTAACGTCCTGGCCG 60.602 55.000 0.00 0.00 0.00 6.13
3241 3338 8.291740 GGCATCAAAATTTGCATTTAAACTCTT 58.708 29.630 0.00 0.00 40.66 2.85
3480 3580 4.021544 ACTTCTTAGACTTCAGAGCTGTGG 60.022 45.833 11.47 0.00 0.00 4.17
3514 3614 2.465860 TTACACCCCGTGAAGACATG 57.534 50.000 0.00 0.00 36.96 3.21
3591 3692 2.322355 AGGTGCGGAAATCAGATGAG 57.678 50.000 0.00 0.00 0.00 2.90
3751 3853 8.273780 ACAAGTGATGAACTATGAGAATTTCC 57.726 34.615 0.00 0.00 38.56 3.13
3886 3992 1.052124 ACGGAAAGAGGTCCACCACA 61.052 55.000 0.00 0.00 37.56 4.17
3963 4069 0.800012 TCCAACAATAACGAAGGCGC 59.200 50.000 0.00 0.00 42.48 6.53
4027 4133 5.773575 TCTGTCACAGACTCACAGTTATTC 58.226 41.667 2.36 0.00 38.94 1.75
4039 4145 8.534333 TGTTAGTTTTATCATCTGTCACAGAC 57.466 34.615 10.48 0.00 43.63 3.51
4193 4300 0.608130 GGGAAGAGGGCGCAAAAATT 59.392 50.000 10.83 0.00 0.00 1.82
4196 4303 1.303317 GAGGGAAGAGGGCGCAAAA 60.303 57.895 10.83 0.00 0.00 2.44
4202 4309 2.774809 AGAGTTATTGAGGGAAGAGGGC 59.225 50.000 0.00 0.00 0.00 5.19
4203 4310 4.471386 TCAAGAGTTATTGAGGGAAGAGGG 59.529 45.833 0.00 0.00 34.31 4.30
4213 4320 8.208224 TGTAAAACCAGACTCAAGAGTTATTGA 58.792 33.333 3.96 0.00 42.66 2.57
4214 4321 8.378172 TGTAAAACCAGACTCAAGAGTTATTG 57.622 34.615 3.96 4.23 42.66 1.90
4215 4322 8.211629 ACTGTAAAACCAGACTCAAGAGTTATT 58.788 33.333 3.96 0.00 42.66 1.40
4216 4323 7.736893 ACTGTAAAACCAGACTCAAGAGTTAT 58.263 34.615 3.96 0.00 42.66 1.89
4217 4324 7.120923 ACTGTAAAACCAGACTCAAGAGTTA 57.879 36.000 3.96 0.00 42.66 2.24
4218 4325 5.990668 ACTGTAAAACCAGACTCAAGAGTT 58.009 37.500 3.96 0.00 42.66 3.01
4219 4326 5.615925 ACTGTAAAACCAGACTCAAGAGT 57.384 39.130 1.68 1.68 45.84 3.24
4220 4327 6.750148 ACTACTGTAAAACCAGACTCAAGAG 58.250 40.000 0.00 0.00 36.30 2.85
4221 4328 6.726490 ACTACTGTAAAACCAGACTCAAGA 57.274 37.500 0.00 0.00 36.30 3.02
4222 4329 7.787725 AAACTACTGTAAAACCAGACTCAAG 57.212 36.000 0.00 0.00 36.30 3.02
4223 4330 8.570068 AAAAACTACTGTAAAACCAGACTCAA 57.430 30.769 0.00 0.00 36.30 3.02
4301 4413 7.928706 GCAGATCCTTATATCACAAACTGTAGT 59.071 37.037 0.00 0.00 0.00 2.73
4365 4477 8.615211 TGCAACAGAACATAATTTATGCTAGAG 58.385 33.333 14.88 5.86 39.79 2.43
4394 4516 3.747529 CACCAAATTTCCAAATGTCAGGC 59.252 43.478 0.00 0.00 0.00 4.85
4523 4645 6.071108 TGGAAATTGAACCTCAAAAAGTGTCA 60.071 34.615 0.00 0.00 40.12 3.58
4541 4663 4.293368 AGGAGAGGGAACAGAATGGAAATT 59.707 41.667 0.00 0.00 43.62 1.82
4613 4735 3.304257 GCACCTGGATTTTCAGATATGCG 60.304 47.826 0.00 0.00 36.93 4.73
4814 4936 4.676924 GTGATTTAGTGCTGCAAGTTTCAC 59.323 41.667 2.77 10.57 35.30 3.18
4850 4973 4.576053 CCATCACAGTCTGTTTTGTCTTGA 59.424 41.667 1.67 0.00 0.00 3.02
4858 4981 1.609208 GTGGCCATCACAGTCTGTTT 58.391 50.000 9.72 0.00 45.39 2.83
4865 4988 1.340308 TGAGAATGGTGGCCATCACAG 60.340 52.381 24.07 0.00 44.40 3.66
4879 5002 4.934797 TGAGAAAAGGGGTCATGAGAAT 57.065 40.909 0.00 0.00 0.00 2.40
4986 5109 0.663688 GCGCCTAGAACGAGATCTCA 59.336 55.000 22.31 1.54 0.00 3.27
5008 5131 4.182433 TGCCGCTGTCACCAACCA 62.182 61.111 0.00 0.00 0.00 3.67
5013 5136 3.965539 ATCTGCTGCCGCTGTCACC 62.966 63.158 0.70 0.00 36.58 4.02
5335 5470 0.613260 TTGATAGGACAAGGCTGCGT 59.387 50.000 0.00 0.00 0.00 5.24
5336 5471 1.737838 TTTGATAGGACAAGGCTGCG 58.262 50.000 0.00 0.00 0.00 5.18
5337 5472 3.736126 GCAATTTGATAGGACAAGGCTGC 60.736 47.826 0.00 0.00 0.00 5.25
5338 5473 3.181483 GGCAATTTGATAGGACAAGGCTG 60.181 47.826 0.00 0.00 0.00 4.85
5339 5474 3.026694 GGCAATTTGATAGGACAAGGCT 58.973 45.455 0.00 0.00 0.00 4.58
5340 5475 3.026694 AGGCAATTTGATAGGACAAGGC 58.973 45.455 0.00 0.00 0.00 4.35
5341 5476 3.382546 CCAGGCAATTTGATAGGACAAGG 59.617 47.826 0.00 0.00 0.00 3.61
5350 5485 8.938801 TTATATATGTGTCCAGGCAATTTGAT 57.061 30.769 0.00 0.00 0.00 2.57
5358 5493 4.094887 CGCCAATTATATATGTGTCCAGGC 59.905 45.833 0.00 0.00 0.00 4.85
5370 5505 2.714250 TCTTCACCCCCGCCAATTATAT 59.286 45.455 0.00 0.00 0.00 0.86
5371 5506 2.105821 CTCTTCACCCCCGCCAATTATA 59.894 50.000 0.00 0.00 0.00 0.98
5372 5507 0.923358 TCTTCACCCCCGCCAATTAT 59.077 50.000 0.00 0.00 0.00 1.28
5373 5508 0.254747 CTCTTCACCCCCGCCAATTA 59.745 55.000 0.00 0.00 0.00 1.40
5374 5509 1.000896 CTCTTCACCCCCGCCAATT 60.001 57.895 0.00 0.00 0.00 2.32
5375 5510 1.915078 CTCTCTTCACCCCCGCCAAT 61.915 60.000 0.00 0.00 0.00 3.16
5376 5511 2.528127 TCTCTTCACCCCCGCCAA 60.528 61.111 0.00 0.00 0.00 4.52
5377 5512 2.822643 ATCTCTCTTCACCCCCGCCA 62.823 60.000 0.00 0.00 0.00 5.69
5380 5975 1.195115 TTCATCTCTCTTCACCCCCG 58.805 55.000 0.00 0.00 0.00 5.73
5404 5999 2.706339 ATCCGCAGCAATTTCTCTCT 57.294 45.000 0.00 0.00 0.00 3.10
5405 6000 3.722147 TCTATCCGCAGCAATTTCTCTC 58.278 45.455 0.00 0.00 0.00 3.20
5406 6001 3.827008 TCTATCCGCAGCAATTTCTCT 57.173 42.857 0.00 0.00 0.00 3.10
5407 6002 3.122613 CGATCTATCCGCAGCAATTTCTC 59.877 47.826 0.00 0.00 0.00 2.87
5409 6004 2.158449 CCGATCTATCCGCAGCAATTTC 59.842 50.000 0.00 0.00 0.00 2.17
5410 6005 2.146342 CCGATCTATCCGCAGCAATTT 58.854 47.619 0.00 0.00 0.00 1.82
5411 6006 1.609061 CCCGATCTATCCGCAGCAATT 60.609 52.381 0.00 0.00 0.00 2.32
5414 6009 1.806461 GACCCGATCTATCCGCAGCA 61.806 60.000 0.00 0.00 0.00 4.41
5415 6010 1.080434 GACCCGATCTATCCGCAGC 60.080 63.158 0.00 0.00 0.00 5.25
5416 6011 1.179174 TGGACCCGATCTATCCGCAG 61.179 60.000 0.00 0.00 35.06 5.18
5457 6052 2.509548 CCTATGTGGGGAGGAAATGTGA 59.490 50.000 0.00 0.00 34.46 3.58
5502 6097 0.817654 GCATTGTTGGCCCTAAGGAC 59.182 55.000 0.00 0.00 44.37 3.85
5503 6098 0.679640 CGCATTGTTGGCCCTAAGGA 60.680 55.000 0.00 0.00 33.47 3.36
5504 6099 1.666209 CCGCATTGTTGGCCCTAAGG 61.666 60.000 0.00 0.00 0.00 2.69
5531 7087 2.151202 GACATTTGATGGTGTCCGTGT 58.849 47.619 0.00 0.00 38.98 4.49
5532 7088 2.900122 GACATTTGATGGTGTCCGTG 57.100 50.000 0.00 0.00 38.98 4.94
5536 7092 2.422597 TCACGGACATTTGATGGTGTC 58.577 47.619 0.00 0.00 43.02 3.67
5537 7093 2.552315 GTTCACGGACATTTGATGGTGT 59.448 45.455 0.00 0.00 33.60 4.16
5538 7094 2.551887 TGTTCACGGACATTTGATGGTG 59.448 45.455 0.00 0.00 33.60 4.17
5539 7095 2.552315 GTGTTCACGGACATTTGATGGT 59.448 45.455 0.00 0.00 33.60 3.55
5541 7097 2.838275 CGTGTTCACGGACATTTGATG 58.162 47.619 16.17 0.00 0.00 3.07
5553 7109 2.958016 ACGTCGTGCCGTGTTCAC 60.958 61.111 0.00 0.00 40.08 3.18
5606 7167 3.444034 TGAGAGGACATTTAGTGACTCCG 59.556 47.826 0.00 0.00 36.62 4.63
5641 7202 8.178964 GGTCATTTGGTTTGTTTTTCTTTAACC 58.821 33.333 0.00 0.00 38.92 2.85
5648 7209 5.106442 AGACGGTCATTTGGTTTGTTTTTC 58.894 37.500 11.27 0.00 0.00 2.29
5727 7288 2.992124 TTCAAGGAGTGTTTGTCGGA 57.008 45.000 0.00 0.00 0.00 4.55
5730 7291 5.757850 ACATCTTTCAAGGAGTGTTTGTC 57.242 39.130 0.00 0.00 0.00 3.18
5732 7293 5.007626 TCGAACATCTTTCAAGGAGTGTTTG 59.992 40.000 10.92 10.92 33.71 2.93
5741 7302 7.484641 TGAAAAACTTGTCGAACATCTTTCAAG 59.515 33.333 6.60 6.60 38.40 3.02
5742 7303 7.309177 TGAAAAACTTGTCGAACATCTTTCAA 58.691 30.769 0.00 0.00 0.00 2.69
5745 7306 8.702163 AATTGAAAAACTTGTCGAACATCTTT 57.298 26.923 0.00 0.00 0.00 2.52
5751 7312 6.129457 CGATGGAATTGAAAAACTTGTCGAAC 60.129 38.462 0.00 0.00 0.00 3.95
5771 7332 2.639839 AGGGAGTATTTGGGATCGATGG 59.360 50.000 0.54 0.00 0.00 3.51
5785 7346 2.617840 AAGGAAGGACGAAGGGAGTA 57.382 50.000 0.00 0.00 0.00 2.59
5798 7359 6.456795 AGTTCAAACTCAAAGGAAAGGAAG 57.543 37.500 0.00 0.00 32.86 3.46
5799 7360 6.663523 AGAAGTTCAAACTCAAAGGAAAGGAA 59.336 34.615 5.50 0.00 38.57 3.36
5800 7361 6.187682 AGAAGTTCAAACTCAAAGGAAAGGA 58.812 36.000 5.50 0.00 38.57 3.36
5801 7362 6.456795 AGAAGTTCAAACTCAAAGGAAAGG 57.543 37.500 5.50 0.00 38.57 3.11
5802 7363 7.486232 GTGAAGAAGTTCAAACTCAAAGGAAAG 59.514 37.037 5.50 0.00 44.44 2.62
5803 7364 7.040062 TGTGAAGAAGTTCAAACTCAAAGGAAA 60.040 33.333 5.50 0.00 44.44 3.13
5809 7370 6.757897 ACATGTGAAGAAGTTCAAACTCAA 57.242 33.333 5.50 0.00 44.44 3.02
5811 7372 9.387123 GAATTACATGTGAAGAAGTTCAAACTC 57.613 33.333 9.11 0.00 44.44 3.01
5812 7373 8.902806 TGAATTACATGTGAAGAAGTTCAAACT 58.097 29.630 9.11 0.00 44.44 2.66
5813 7374 9.173939 CTGAATTACATGTGAAGAAGTTCAAAC 57.826 33.333 9.11 0.92 44.44 2.93
5814 7375 8.902806 ACTGAATTACATGTGAAGAAGTTCAAA 58.097 29.630 9.11 0.00 44.44 2.69
5816 7377 8.450578 AACTGAATTACATGTGAAGAAGTTCA 57.549 30.769 9.11 6.06 40.55 3.18
5818 7379 9.561069 ACTAACTGAATTACATGTGAAGAAGTT 57.439 29.630 9.11 14.32 0.00 2.66
5819 7380 8.993121 CACTAACTGAATTACATGTGAAGAAGT 58.007 33.333 9.11 4.13 0.00 3.01
5821 7382 8.773645 CACACTAACTGAATTACATGTGAAGAA 58.226 33.333 9.11 0.00 37.15 2.52
5822 7383 7.095229 GCACACTAACTGAATTACATGTGAAGA 60.095 37.037 9.11 0.00 37.15 2.87
5823 7384 7.017645 GCACACTAACTGAATTACATGTGAAG 58.982 38.462 9.11 0.00 37.15 3.02
5824 7385 6.072728 GGCACACTAACTGAATTACATGTGAA 60.073 38.462 9.11 0.00 37.15 3.18
5825 7386 5.411361 GGCACACTAACTGAATTACATGTGA 59.589 40.000 9.11 0.00 37.15 3.58
5826 7387 5.391950 GGGCACACTAACTGAATTACATGTG 60.392 44.000 9.11 0.00 37.61 3.21
5828 7389 4.699735 TGGGCACACTAACTGAATTACATG 59.300 41.667 0.00 0.00 0.00 3.21
5829 7390 4.917385 TGGGCACACTAACTGAATTACAT 58.083 39.130 0.00 0.00 0.00 2.29
5831 7392 5.414454 TCAATGGGCACACTAACTGAATTAC 59.586 40.000 0.00 0.00 0.00 1.89
5833 7394 4.406456 TCAATGGGCACACTAACTGAATT 58.594 39.130 0.00 0.00 0.00 2.17
5834 7395 4.012374 CTCAATGGGCACACTAACTGAAT 58.988 43.478 0.00 0.00 0.00 2.57
5837 7398 1.470098 GCTCAATGGGCACACTAACTG 59.530 52.381 0.00 0.00 0.00 3.16
5839 7400 1.826385 AGCTCAATGGGCACACTAAC 58.174 50.000 8.22 0.00 0.00 2.34
5840 7401 2.584835 AAGCTCAATGGGCACACTAA 57.415 45.000 8.22 0.00 0.00 2.24
5841 7402 2.584835 AAAGCTCAATGGGCACACTA 57.415 45.000 8.22 0.00 0.00 2.74
5843 7404 3.193267 TGAATAAAGCTCAATGGGCACAC 59.807 43.478 8.22 0.00 0.00 3.82
5845 7406 4.176271 GTTGAATAAAGCTCAATGGGCAC 58.824 43.478 8.22 0.00 35.36 5.01
5846 7407 3.831333 TGTTGAATAAAGCTCAATGGGCA 59.169 39.130 8.22 0.00 35.36 5.36
5847 7408 4.454728 TGTTGAATAAAGCTCAATGGGC 57.545 40.909 0.00 0.00 35.36 5.36
5848 7409 5.292589 GCATTGTTGAATAAAGCTCAATGGG 59.707 40.000 17.27 0.36 40.97 4.00
5850 7411 6.954616 TGCATTGTTGAATAAAGCTCAATG 57.045 33.333 13.38 13.38 42.45 2.82
5851 7412 7.324935 TGATGCATTGTTGAATAAAGCTCAAT 58.675 30.769 0.00 0.00 35.36 2.57
5852 7413 6.689554 TGATGCATTGTTGAATAAAGCTCAA 58.310 32.000 0.00 0.00 0.00 3.02
5854 7415 7.618442 CAATGATGCATTGTTGAATAAAGCTC 58.382 34.615 15.89 0.65 44.12 4.09
5855 7416 7.534085 CAATGATGCATTGTTGAATAAAGCT 57.466 32.000 15.89 0.00 44.12 3.74
5875 7743 1.080569 GTGCAACCCCTTCGCAATG 60.081 57.895 0.00 0.00 37.41 2.82
5881 7749 0.250338 AAGACGAGTGCAACCCCTTC 60.250 55.000 0.00 0.00 37.80 3.46
5885 7753 0.818040 ACCAAAGACGAGTGCAACCC 60.818 55.000 0.00 0.00 37.80 4.11
5896 7764 2.349532 GCTTGCACGTTCTACCAAAGAC 60.350 50.000 0.00 0.00 32.51 3.01
5899 7768 1.961793 AGCTTGCACGTTCTACCAAA 58.038 45.000 0.00 0.00 0.00 3.28
5915 7794 4.582869 TGTTGATCACTTCATTGCTAGCT 58.417 39.130 17.23 0.00 33.34 3.32
5925 7804 4.671377 TGTTGCAACTTGTTGATCACTTC 58.329 39.130 28.61 0.00 0.00 3.01
5929 7808 5.259832 TCAATGTTGCAACTTGTTGATCA 57.740 34.783 28.61 12.78 0.00 2.92
5969 7848 3.683365 TCTTGCTGCTCTATGTGTTGA 57.317 42.857 0.00 0.00 0.00 3.18
5979 7858 2.755836 TGTTTTCGTTCTTGCTGCTC 57.244 45.000 0.00 0.00 0.00 4.26


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.