Multiple sequence alignment - TraesCS2A01G423300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G423300 chr2A 100.000 9791 0 0 1 9791 678145158 678154948 0.000000e+00 18081.0
1 TraesCS2A01G423300 chr2A 91.653 611 24 9 5185 5768 678149720 678150330 0.000000e+00 821.0
2 TraesCS2A01G423300 chr2A 91.653 611 24 9 4563 5173 678150342 678150925 0.000000e+00 821.0
3 TraesCS2A01G423300 chr2A 86.694 481 28 15 230 705 645903448 645902999 1.470000e-137 501.0
4 TraesCS2A01G423300 chr2A 86.054 294 36 5 3947 4238 678148896 678149186 2.660000e-80 311.0
5 TraesCS2A01G423300 chr2A 86.054 294 36 5 3739 4029 678149104 678149395 2.660000e-80 311.0
6 TraesCS2A01G423300 chr2A 83.286 353 31 16 155 489 678124441 678124783 5.750000e-77 300.0
7 TraesCS2A01G423300 chr2A 88.142 253 28 2 4303 4553 678148675 678148927 5.750000e-77 300.0
8 TraesCS2A01G423300 chr2A 88.142 253 28 2 3518 3770 678149460 678149710 5.750000e-77 300.0
9 TraesCS2A01G423300 chr2A 91.975 162 13 0 1 162 400972927 400972766 2.750000e-55 228.0
10 TraesCS2A01G423300 chr2A 91.975 162 13 0 1 162 402912670 402912509 2.750000e-55 228.0
11 TraesCS2A01G423300 chrUn 99.271 4116 25 4 1492 5603 76112358 76116472 0.000000e+00 7430.0
12 TraesCS2A01G423300 chrUn 97.389 1877 43 6 6678 8551 76127698 76129571 0.000000e+00 3190.0
13 TraesCS2A01G423300 chrUn 99.010 1616 13 2 4262 5874 384606351 384604736 0.000000e+00 2892.0
14 TraesCS2A01G423300 chrUn 96.858 1464 40 5 6471 7932 333468424 333466965 0.000000e+00 2444.0
15 TraesCS2A01G423300 chrUn 98.546 1307 18 1 7129 8434 413434991 413433685 0.000000e+00 2307.0
16 TraesCS2A01G423300 chrUn 99.256 1209 7 2 5228 6435 333469633 333468426 0.000000e+00 2182.0
17 TraesCS2A01G423300 chrUn 99.256 1209 7 2 5228 6435 411507490 411508697 0.000000e+00 2182.0
18 TraesCS2A01G423300 chrUn 99.540 1087 5 0 1344 2430 378875539 378876625 0.000000e+00 1980.0
19 TraesCS2A01G423300 chrUn 96.906 1099 30 3 6900 7997 439977230 439978325 0.000000e+00 1838.0
20 TraesCS2A01G423300 chrUn 98.456 1036 12 4 5603 6636 76126665 76127698 0.000000e+00 1821.0
21 TraesCS2A01G423300 chrUn 98.688 991 13 0 7489 8479 453466857 453467847 0.000000e+00 1759.0
22 TraesCS2A01G423300 chrUn 99.840 624 1 0 1344 1967 375159709 375159086 0.000000e+00 1147.0
23 TraesCS2A01G423300 chrUn 98.851 609 7 0 7942 8550 458081324 458080716 0.000000e+00 1086.0
24 TraesCS2A01G423300 chrUn 91.857 614 25 8 4563 5176 384605427 384604839 0.000000e+00 833.0
25 TraesCS2A01G423300 chrUn 91.916 569 21 8 4608 5176 333469633 333469090 0.000000e+00 773.0
26 TraesCS2A01G423300 chrUn 92.049 566 20 8 4608 5173 411507490 411508030 0.000000e+00 773.0
27 TraesCS2A01G423300 chrUn 95.866 387 15 1 5386 5771 384605822 384605436 8.350000e-175 625.0
28 TraesCS2A01G423300 chrUn 95.833 384 15 1 5386 5768 76115657 76116040 3.880000e-173 619.0
29 TraesCS2A01G423300 chrUn 89.686 446 21 3 4563 5008 76116052 76116472 6.690000e-151 545.0
30 TraesCS2A01G423300 chrUn 98.238 227 4 0 8324 8550 353231606 353231832 1.980000e-106 398.0
31 TraesCS2A01G423300 chrUn 84.658 365 33 11 4109 4471 222062154 222061811 9.420000e-90 342.0
32 TraesCS2A01G423300 chrUn 86.348 293 37 3 3739 4029 76114813 76115104 5.710000e-82 316.0
33 TraesCS2A01G423300 chrUn 86.054 294 36 5 3947 4238 76114605 76114895 2.660000e-80 311.0
34 TraesCS2A01G423300 chrUn 87.645 259 31 1 3908 4165 15540766 15540508 5.750000e-77 300.0
35 TraesCS2A01G423300 chrUn 87.645 259 31 1 3908 4165 222062310 222062052 5.750000e-77 300.0
36 TraesCS2A01G423300 chrUn 88.889 243 25 2 3531 3773 384606297 384606057 2.070000e-76 298.0
37 TraesCS2A01G423300 chrUn 87.747 253 29 2 4303 4553 76114384 76114636 2.670000e-75 294.0
38 TraesCS2A01G423300 chrUn 87.747 253 29 2 3518 3770 76115169 76115419 2.670000e-75 294.0
39 TraesCS2A01G423300 chrUn 99.359 156 1 0 1344 1499 76110947 76111102 5.790000e-72 283.0
40 TraesCS2A01G423300 chrUn 83.193 238 36 4 3776 4013 15542437 15542204 2.140000e-51 215.0
41 TraesCS2A01G423300 chrUn 82.773 238 37 4 3776 4013 222063980 222063747 9.960000e-50 209.0
42 TraesCS2A01G423300 chrUn 90.164 61 4 2 8923 8983 84785834 84785892 2.930000e-10 78.7
43 TraesCS2A01G423300 chrUn 100.000 28 0 0 9415 9442 355719349 355719322 1.800000e-02 52.8
44 TraesCS2A01G423300 chrUn 100.000 28 0 0 9415 9442 383097559 383097532 1.800000e-02 52.8
45 TraesCS2A01G423300 chr6B 98.941 2928 26 4 3512 6435 12554676 12557602 0.000000e+00 5230.0
46 TraesCS2A01G423300 chr6B 96.387 941 28 5 6471 7410 12557604 12558539 0.000000e+00 1544.0
47 TraesCS2A01G423300 chr6B 96.048 835 31 2 6898 7730 67946237 67945403 0.000000e+00 1358.0
48 TraesCS2A01G423300 chr6B 99.840 624 1 0 1344 1967 12551972 12552595 0.000000e+00 1147.0
49 TraesCS2A01G423300 chr6B 91.980 611 24 8 4563 5173 12556349 12556934 0.000000e+00 833.0
50 TraesCS2A01G423300 chr6B 96.354 384 13 1 5386 5768 12555954 12556337 1.790000e-176 630.0
51 TraesCS2A01G423300 chr6B 86.348 293 37 3 3739 4029 12555110 12555401 5.710000e-82 316.0
52 TraesCS2A01G423300 chr6B 85.374 294 38 5 3947 4238 12554902 12555192 5.750000e-77 300.0
53 TraesCS2A01G423300 chr6B 89.167 240 24 2 3531 3770 12555479 12555716 2.070000e-76 298.0
54 TraesCS2A01G423300 chr6B 89.205 176 15 4 1 173 159420129 159419955 5.950000e-52 217.0
55 TraesCS2A01G423300 chr2B 95.770 851 30 4 6890 7735 296027170 296026321 0.000000e+00 1367.0
56 TraesCS2A01G423300 chr2B 95.621 845 33 4 6892 7733 316104091 316103248 0.000000e+00 1352.0
57 TraesCS2A01G423300 chr2B 95.503 845 34 4 6894 7736 118827930 118827088 0.000000e+00 1347.0
58 TraesCS2A01G423300 chr2B 86.278 1166 79 41 197 1344 636091916 636093018 0.000000e+00 1192.0
59 TraesCS2A01G423300 chr2B 88.702 593 48 10 8551 9129 636093009 636093596 0.000000e+00 706.0
60 TraesCS2A01G423300 chr2B 80.381 367 48 19 989 1344 695732420 695732773 3.510000e-64 257.0
61 TraesCS2A01G423300 chr2B 79.348 368 50 19 989 1344 695693075 695693428 1.640000e-57 235.0
62 TraesCS2A01G423300 chr2B 78.962 366 55 16 989 1344 695684380 695684733 7.650000e-56 230.0
63 TraesCS2A01G423300 chr2B 78.904 365 54 17 989 1344 695688781 695689131 9.890000e-55 226.0
64 TraesCS2A01G423300 chr2B 92.105 76 6 0 8475 8550 420733129 420733204 3.740000e-19 108.0
65 TraesCS2A01G423300 chr2D 90.293 649 29 15 718 1344 534737438 534738074 0.000000e+00 819.0
66 TraesCS2A01G423300 chr2D 91.095 539 28 8 8551 9087 534738065 534738585 0.000000e+00 712.0
67 TraesCS2A01G423300 chr2D 90.256 390 19 11 155 543 534736672 534737043 8.840000e-135 492.0
68 TraesCS2A01G423300 chr2D 85.012 427 46 11 9364 9788 403472164 403471754 1.520000e-112 418.0
69 TraesCS2A01G423300 chr2D 83.951 405 55 8 9385 9787 650470572 650470176 7.180000e-101 379.0
70 TraesCS2A01G423300 chr2D 85.897 312 22 17 9061 9362 534761468 534761767 7.380000e-81 313.0
71 TraesCS2A01G423300 chr2D 86.275 51 7 0 9411 9461 448193014 448193064 1.000000e-03 56.5
72 TraesCS2A01G423300 chr3B 87.500 616 63 4 3947 4561 706543058 706543660 0.000000e+00 699.0
73 TraesCS2A01G423300 chr3B 94.040 302 16 2 7751 8051 85348400 85348700 3.220000e-124 457.0
74 TraesCS2A01G423300 chr3B 85.680 412 50 6 4985 5388 651664251 651664661 9.090000e-115 425.0
75 TraesCS2A01G423300 chr3B 87.246 345 40 3 3687 4029 706543006 706543348 3.320000e-104 390.0
76 TraesCS2A01G423300 chr3B 82.529 435 48 16 3947 4378 706543517 706543926 3.360000e-94 357.0
77 TraesCS2A01G423300 chr3B 90.335 269 22 3 4297 4561 706542947 706543215 5.630000e-92 350.0
78 TraesCS2A01G423300 chr3B 88.119 303 20 10 6578 6870 85348024 85348320 7.280000e-91 346.0
79 TraesCS2A01G423300 chr3B 87.681 276 32 1 3518 3791 706542953 706543228 4.410000e-83 320.0
80 TraesCS2A01G423300 chr3B 100.000 28 0 0 314 341 610965112 610965139 1.800000e-02 52.8
81 TraesCS2A01G423300 chr5A 85.520 663 56 19 7898 8550 320363634 320363002 0.000000e+00 656.0
82 TraesCS2A01G423300 chr5A 83.914 373 25 15 230 598 272867724 272868065 3.410000e-84 324.0
83 TraesCS2A01G423300 chr5A 92.208 154 11 1 7727 7879 320366352 320366199 5.950000e-52 217.0
84 TraesCS2A01G423300 chr5A 96.396 111 4 0 595 705 272869841 272869951 6.040000e-42 183.0
85 TraesCS2A01G423300 chr1A 82.805 663 53 24 7898 8550 518645788 518646399 4.020000e-148 536.0
86 TraesCS2A01G423300 chr1A 82.609 322 47 8 5056 5371 567503294 567503612 9.690000e-70 276.0
87 TraesCS2A01G423300 chr1A 92.857 154 10 1 7727 7879 518642870 518643023 1.280000e-53 222.0
88 TraesCS2A01G423300 chr3D 86.639 479 51 8 3947 4423 534692937 534693404 1.460000e-142 518.0
89 TraesCS2A01G423300 chr3D 90.637 267 22 3 4297 4561 534692391 534692656 1.560000e-92 351.0
90 TraesCS2A01G423300 chr3D 81.776 428 66 10 9364 9788 529502328 529501910 2.020000e-91 348.0
91 TraesCS2A01G423300 chr3D 88.321 274 31 1 3518 3791 534692834 534693106 2.640000e-85 327.0
92 TraesCS2A01G423300 chr3D 87.956 274 32 1 3518 3791 534692397 534692669 1.230000e-83 322.0
93 TraesCS2A01G423300 chr3D 82.849 344 35 7 3687 4029 534692448 534692768 4.470000e-73 287.0
94 TraesCS2A01G423300 chr3D 81.333 75 14 0 9364 9438 143967450 143967376 2.950000e-05 62.1
95 TraesCS2A01G423300 chr3A 82.063 630 90 9 4767 5373 107761854 107762483 5.240000e-142 516.0
96 TraesCS2A01G423300 chr3A 84.491 432 45 16 9364 9788 1646312 1646728 3.290000e-109 407.0
97 TraesCS2A01G423300 chr4D 86.385 426 49 7 9364 9788 435663217 435662800 3.220000e-124 457.0
98 TraesCS2A01G423300 chr4D 85.567 194 25 2 1001 1194 329000642 329000452 6.000000e-47 200.0
99 TraesCS2A01G423300 chr4D 78.534 191 32 6 9355 9544 418358991 418359173 6.210000e-22 117.0
100 TraesCS2A01G423300 chr1D 86.024 415 43 10 9379 9788 366008022 366007618 1.950000e-116 431.0
101 TraesCS2A01G423300 chr1D 82.759 87 0 10 9364 9449 310858850 310858922 8.210000e-06 63.9
102 TraesCS2A01G423300 chr6D 84.419 430 51 8 4135 4561 428259870 428259454 9.150000e-110 409.0
103 TraesCS2A01G423300 chr6D 82.297 418 54 13 9377 9790 186554908 186554507 2.620000e-90 344.0
104 TraesCS2A01G423300 chr6D 83.965 343 55 0 3687 4029 428259663 428259321 7.330000e-86 329.0
105 TraesCS2A01G423300 chr6D 84.512 297 44 2 3950 4245 428259608 428259313 9.620000e-75 292.0
106 TraesCS2A01G423300 chr6D 93.413 167 9 2 1 165 69024119 69024285 7.590000e-61 246.0
107 TraesCS2A01G423300 chr6D 82.927 82 11 2 8904 8983 440914509 440914589 4.910000e-08 71.3
108 TraesCS2A01G423300 chr5B 84.075 427 59 7 9364 9788 91899097 91898678 4.260000e-108 403.0
109 TraesCS2A01G423300 chr5B 85.430 302 41 3 9485 9784 487922961 487922661 2.660000e-80 311.0
110 TraesCS2A01G423300 chr5B 100.000 28 0 0 314 341 384211950 384211977 1.800000e-02 52.8
111 TraesCS2A01G423300 chr7D 82.864 426 61 10 9366 9788 583053062 583052646 1.200000e-98 372.0
112 TraesCS2A01G423300 chr7D 80.738 244 37 6 8554 8795 113719116 113719351 2.170000e-41 182.0
113 TraesCS2A01G423300 chr7D 82.178 101 12 6 9364 9461 568037142 568037045 2.270000e-11 82.4
114 TraesCS2A01G423300 chr4A 86.319 307 35 6 9485 9787 597323377 597323074 2.640000e-85 327.0
115 TraesCS2A01G423300 chr4A 90.854 164 13 1 1 162 730722428 730722265 1.660000e-52 219.0
116 TraesCS2A01G423300 chr4A 84.772 197 27 2 998 1194 141124671 141124864 2.790000e-45 195.0
117 TraesCS2A01G423300 chr5D 93.889 180 9 2 1 179 433395579 433395401 4.510000e-68 270.0
118 TraesCS2A01G423300 chr1B 96.273 161 6 0 2 162 645123233 645123073 2.100000e-66 265.0
119 TraesCS2A01G423300 chr1B 100.000 28 0 0 314 341 544258772 544258799 1.800000e-02 52.8
120 TraesCS2A01G423300 chr4B 95.062 162 8 0 1 162 310405257 310405096 1.260000e-63 255.0
121 TraesCS2A01G423300 chr4B 78.652 356 50 17 1001 1344 408953018 408952677 7.700000e-51 213.0
122 TraesCS2A01G423300 chr4B 100.000 29 0 0 9235 9263 601285616 601285588 5.000000e-03 54.7
123 TraesCS2A01G423300 chr4B 100.000 28 0 0 9415 9442 2648129 2648102 1.800000e-02 52.8
124 TraesCS2A01G423300 chr7A 93.827 162 10 0 1 162 629087711 629087550 2.730000e-60 244.0
125 TraesCS2A01G423300 chr7A 86.667 60 7 1 8924 8983 118574676 118574734 2.280000e-06 65.8
126 TraesCS2A01G423300 chr7B 90.164 61 4 2 8923 8983 73290141 73290199 2.930000e-10 78.7
127 TraesCS2A01G423300 chr7B 86.301 73 6 2 8911 8983 73331949 73332017 1.050000e-09 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G423300 chr2A 678145158 678154948 9790 False 18081.000000 18081 100.000000 1 9791 1 chr2A.!!$F2 9790
1 TraesCS2A01G423300 chr2A 678148675 678150925 2250 False 477.333333 821 88.616333 3518 5768 6 chr2A.!!$F3 2250
2 TraesCS2A01G423300 chrUn 76126665 76129571 2906 False 2505.500000 3190 97.922500 5603 8551 2 chrUn.!!$F7 2948
3 TraesCS2A01G423300 chrUn 413433685 413434991 1306 True 2307.000000 2307 98.546000 7129 8434 1 chrUn.!!$R4 1305
4 TraesCS2A01G423300 chrUn 378875539 378876625 1086 False 1980.000000 1980 99.540000 1344 2430 1 chrUn.!!$F3 1086
5 TraesCS2A01G423300 chrUn 439977230 439978325 1095 False 1838.000000 1838 96.906000 6900 7997 1 chrUn.!!$F4 1097
6 TraesCS2A01G423300 chrUn 333466965 333469633 2668 True 1799.666667 2444 96.010000 4608 7932 3 chrUn.!!$R8 3324
7 TraesCS2A01G423300 chrUn 453466857 453467847 990 False 1759.000000 1759 98.688000 7489 8479 1 chrUn.!!$F5 990
8 TraesCS2A01G423300 chrUn 411507490 411508697 1207 False 1477.500000 2182 95.652500 4608 6435 2 chrUn.!!$F8 1827
9 TraesCS2A01G423300 chrUn 76110947 76116472 5525 False 1261.500000 7430 91.505625 1344 5768 8 chrUn.!!$F6 4424
10 TraesCS2A01G423300 chrUn 384604736 384606351 1615 True 1162.000000 2892 93.905500 3531 5874 4 chrUn.!!$R9 2343
11 TraesCS2A01G423300 chrUn 375159086 375159709 623 True 1147.000000 1147 99.840000 1344 1967 1 chrUn.!!$R2 623
12 TraesCS2A01G423300 chrUn 458080716 458081324 608 True 1086.000000 1086 98.851000 7942 8550 1 chrUn.!!$R5 608
13 TraesCS2A01G423300 chrUn 222061811 222063980 2169 True 283.666667 342 85.025333 3776 4471 3 chrUn.!!$R7 695
14 TraesCS2A01G423300 chrUn 15540508 15542437 1929 True 257.500000 300 85.419000 3776 4165 2 chrUn.!!$R6 389
15 TraesCS2A01G423300 chr6B 67945403 67946237 834 True 1358.000000 1358 96.048000 6898 7730 1 chr6B.!!$R1 832
16 TraesCS2A01G423300 chr6B 12551972 12558539 6567 False 1287.250000 5230 93.048875 1344 7410 8 chr6B.!!$F1 6066
17 TraesCS2A01G423300 chr2B 296026321 296027170 849 True 1367.000000 1367 95.770000 6890 7735 1 chr2B.!!$R2 845
18 TraesCS2A01G423300 chr2B 316103248 316104091 843 True 1352.000000 1352 95.621000 6892 7733 1 chr2B.!!$R3 841
19 TraesCS2A01G423300 chr2B 118827088 118827930 842 True 1347.000000 1347 95.503000 6894 7736 1 chr2B.!!$R1 842
20 TraesCS2A01G423300 chr2B 636091916 636093596 1680 False 949.000000 1192 87.490000 197 9129 2 chr2B.!!$F4 8932
21 TraesCS2A01G423300 chr2B 695688781 695693428 4647 False 230.500000 235 79.126000 989 1344 2 chr2B.!!$F5 355
22 TraesCS2A01G423300 chr2D 534736672 534738585 1913 False 674.333333 819 90.548000 155 9087 3 chr2D.!!$F3 8932
23 TraesCS2A01G423300 chr3B 706542947 706543926 979 False 423.200000 699 87.058200 3518 4561 5 chr3B.!!$F4 1043
24 TraesCS2A01G423300 chr3B 85348024 85348700 676 False 401.500000 457 91.079500 6578 8051 2 chr3B.!!$F3 1473
25 TraesCS2A01G423300 chr5A 320363002 320366352 3350 True 436.500000 656 88.864000 7727 8550 2 chr5A.!!$R1 823
26 TraesCS2A01G423300 chr5A 272867724 272869951 2227 False 253.500000 324 90.155000 230 705 2 chr5A.!!$F1 475
27 TraesCS2A01G423300 chr1A 518642870 518646399 3529 False 379.000000 536 87.831000 7727 8550 2 chr1A.!!$F2 823
28 TraesCS2A01G423300 chr3D 534692391 534693404 1013 False 361.000000 518 87.280400 3518 4561 5 chr3D.!!$F1 1043
29 TraesCS2A01G423300 chr3A 107761854 107762483 629 False 516.000000 516 82.063000 4767 5373 1 chr3A.!!$F2 606
30 TraesCS2A01G423300 chr6D 428259313 428259870 557 True 343.333333 409 84.298667 3687 4561 3 chr6D.!!$R2 874

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
508 515 0.036388 ACGTCAAGATGGTTCCGCAT 60.036 50.000 0.00 0.0 0.00 4.73 F
703 716 0.108585 TGTTCCTTGGCTCTGACCAC 59.891 55.000 0.00 0.0 40.19 4.16 F
1017 1297 0.745845 CGATGGCCTCCACCAAGAAG 60.746 60.000 3.32 0.0 44.65 2.85 F
3005 5388 1.066914 CAAGACAGTCTTCAGCGAGC 58.933 55.000 13.27 0.0 33.78 5.03 F
6389 11090 1.214589 CCTCGGTTTCGTCGTCCAT 59.785 57.895 0.00 0.0 37.69 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2977 5360 1.356124 AGACTGTCTTGCATCCCTGT 58.644 50.000 4.06 0.00 0.00 4.00 R
3005 5388 4.679662 CAAGCAGCAAGAATTAATCCCAG 58.320 43.478 0.00 0.00 0.00 4.45 R
5941 10640 0.320374 ACGAATTGCCGGAGAAGACA 59.680 50.000 5.05 0.00 0.00 3.41 R
6940 11680 0.108186 GTGATGATGGAGGCGTGTGA 60.108 55.000 0.00 0.00 0.00 3.58 R
9726 19814 0.035725 TCCTCGTAGTTGAGCTCCGA 60.036 55.000 12.15 11.37 34.42 4.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.600668 AGATGCCTTATCAAGAATATTAGCTCA 58.399 33.333 0.00 0.00 38.31 4.26
27 28 8.789825 ATGCCTTATCAAGAATATTAGCTCAG 57.210 34.615 0.00 0.00 0.00 3.35
28 29 7.966812 TGCCTTATCAAGAATATTAGCTCAGA 58.033 34.615 0.00 0.00 0.00 3.27
29 30 8.600668 TGCCTTATCAAGAATATTAGCTCAGAT 58.399 33.333 0.00 0.00 0.00 2.90
36 37 9.147732 TCAAGAATATTAGCTCAGATAAGTCCA 57.852 33.333 0.00 0.00 0.00 4.02
37 38 9.421806 CAAGAATATTAGCTCAGATAAGTCCAG 57.578 37.037 0.00 0.00 0.00 3.86
38 39 8.948401 AGAATATTAGCTCAGATAAGTCCAGA 57.052 34.615 0.00 0.00 0.00 3.86
39 40 9.545928 AGAATATTAGCTCAGATAAGTCCAGAT 57.454 33.333 0.00 0.00 0.00 2.90
40 41 9.585099 GAATATTAGCTCAGATAAGTCCAGATG 57.415 37.037 0.00 0.00 0.00 2.90
41 42 6.992664 ATTAGCTCAGATAAGTCCAGATGT 57.007 37.500 0.00 0.00 0.00 3.06
42 43 9.760926 ATATTAGCTCAGATAAGTCCAGATGTA 57.239 33.333 0.00 0.00 0.00 2.29
43 44 8.663209 ATTAGCTCAGATAAGTCCAGATGTAT 57.337 34.615 0.00 0.00 0.00 2.29
44 45 6.343716 AGCTCAGATAAGTCCAGATGTATG 57.656 41.667 0.00 0.00 0.00 2.39
45 46 4.928615 GCTCAGATAAGTCCAGATGTATGC 59.071 45.833 0.00 0.00 0.00 3.14
46 47 5.474578 TCAGATAAGTCCAGATGTATGCC 57.525 43.478 0.00 0.00 0.00 4.40
47 48 4.901250 TCAGATAAGTCCAGATGTATGCCA 59.099 41.667 0.00 0.00 0.00 4.92
48 49 5.366477 TCAGATAAGTCCAGATGTATGCCAA 59.634 40.000 0.00 0.00 0.00 4.52
49 50 5.468072 CAGATAAGTCCAGATGTATGCCAAC 59.532 44.000 0.00 0.00 0.00 3.77
50 51 5.367937 AGATAAGTCCAGATGTATGCCAACT 59.632 40.000 0.00 0.00 0.00 3.16
51 52 6.554982 AGATAAGTCCAGATGTATGCCAACTA 59.445 38.462 0.00 0.00 0.00 2.24
52 53 5.435686 AAGTCCAGATGTATGCCAACTAA 57.564 39.130 0.00 0.00 0.00 2.24
53 54 5.435686 AGTCCAGATGTATGCCAACTAAA 57.564 39.130 0.00 0.00 0.00 1.85
54 55 5.815581 AGTCCAGATGTATGCCAACTAAAA 58.184 37.500 0.00 0.00 0.00 1.52
55 56 6.245408 AGTCCAGATGTATGCCAACTAAAAA 58.755 36.000 0.00 0.00 0.00 1.94
56 57 6.375455 AGTCCAGATGTATGCCAACTAAAAAG 59.625 38.462 0.00 0.00 0.00 2.27
57 58 5.652014 TCCAGATGTATGCCAACTAAAAAGG 59.348 40.000 0.00 0.00 0.00 3.11
66 67 5.644977 GCCAACTAAAAAGGCTCTTACAT 57.355 39.130 0.00 0.00 44.92 2.29
67 68 6.753107 GCCAACTAAAAAGGCTCTTACATA 57.247 37.500 0.00 0.00 44.92 2.29
68 69 7.334844 GCCAACTAAAAAGGCTCTTACATAT 57.665 36.000 0.00 0.00 44.92 1.78
69 70 7.196331 GCCAACTAAAAAGGCTCTTACATATG 58.804 38.462 0.00 0.00 44.92 1.78
70 71 7.148069 GCCAACTAAAAAGGCTCTTACATATGT 60.148 37.037 13.93 13.93 44.92 2.29
71 72 8.739972 CCAACTAAAAAGGCTCTTACATATGTT 58.260 33.333 14.77 0.00 0.00 2.71
74 75 9.515226 ACTAAAAAGGCTCTTACATATGTTTCA 57.485 29.630 14.77 0.00 0.00 2.69
77 78 9.860898 AAAAAGGCTCTTACATATGTTTCAATC 57.139 29.630 14.77 1.14 0.00 2.67
78 79 8.814038 AAAGGCTCTTACATATGTTTCAATCT 57.186 30.769 14.77 3.43 0.00 2.40
79 80 7.798596 AGGCTCTTACATATGTTTCAATCTG 57.201 36.000 14.77 0.00 0.00 2.90
80 81 7.341805 AGGCTCTTACATATGTTTCAATCTGT 58.658 34.615 14.77 0.00 0.00 3.41
81 82 8.486210 AGGCTCTTACATATGTTTCAATCTGTA 58.514 33.333 14.77 0.00 0.00 2.74
82 83 9.277783 GGCTCTTACATATGTTTCAATCTGTAT 57.722 33.333 14.77 0.00 0.00 2.29
87 88 9.898152 TTACATATGTTTCAATCTGTATCCACA 57.102 29.630 14.77 0.00 0.00 4.17
88 89 8.985315 ACATATGTTTCAATCTGTATCCACAT 57.015 30.769 1.41 0.00 33.14 3.21
94 95 9.460019 TGTTTCAATCTGTATCCACATATTTCA 57.540 29.630 0.00 0.00 31.17 2.69
98 99 8.570488 TCAATCTGTATCCACATATTTCAATGC 58.430 33.333 0.00 0.00 31.17 3.56
99 100 8.354426 CAATCTGTATCCACATATTTCAATGCA 58.646 33.333 0.00 0.00 31.17 3.96
100 101 7.263100 TCTGTATCCACATATTTCAATGCAC 57.737 36.000 0.00 0.00 33.14 4.57
101 102 6.827762 TCTGTATCCACATATTTCAATGCACA 59.172 34.615 0.00 0.00 33.14 4.57
102 103 6.794374 TGTATCCACATATTTCAATGCACAC 58.206 36.000 0.00 0.00 0.00 3.82
103 104 6.602803 TGTATCCACATATTTCAATGCACACT 59.397 34.615 0.00 0.00 0.00 3.55
104 105 5.565592 TCCACATATTTCAATGCACACTC 57.434 39.130 0.00 0.00 0.00 3.51
105 106 4.398988 TCCACATATTTCAATGCACACTCC 59.601 41.667 0.00 0.00 0.00 3.85
106 107 4.400251 CCACATATTTCAATGCACACTCCT 59.600 41.667 0.00 0.00 0.00 3.69
107 108 5.449588 CCACATATTTCAATGCACACTCCTC 60.450 44.000 0.00 0.00 0.00 3.71
108 109 4.641989 ACATATTTCAATGCACACTCCTCC 59.358 41.667 0.00 0.00 0.00 4.30
109 110 2.655090 TTTCAATGCACACTCCTCCA 57.345 45.000 0.00 0.00 0.00 3.86
110 111 2.655090 TTCAATGCACACTCCTCCAA 57.345 45.000 0.00 0.00 0.00 3.53
111 112 2.885135 TCAATGCACACTCCTCCAAT 57.115 45.000 0.00 0.00 0.00 3.16
112 113 3.998913 TCAATGCACACTCCTCCAATA 57.001 42.857 0.00 0.00 0.00 1.90
113 114 3.609853 TCAATGCACACTCCTCCAATAC 58.390 45.455 0.00 0.00 0.00 1.89
114 115 2.684881 CAATGCACACTCCTCCAATACC 59.315 50.000 0.00 0.00 0.00 2.73
115 116 1.656587 TGCACACTCCTCCAATACCT 58.343 50.000 0.00 0.00 0.00 3.08
116 117 1.278985 TGCACACTCCTCCAATACCTG 59.721 52.381 0.00 0.00 0.00 4.00
118 119 0.912486 ACACTCCTCCAATACCTGGC 59.088 55.000 0.00 0.00 45.98 4.85
119 120 1.207791 CACTCCTCCAATACCTGGCT 58.792 55.000 0.00 0.00 45.98 4.75
120 121 1.561542 CACTCCTCCAATACCTGGCTT 59.438 52.381 0.00 0.00 45.98 4.35
121 122 1.561542 ACTCCTCCAATACCTGGCTTG 59.438 52.381 0.00 0.00 45.98 4.01
122 123 0.255890 TCCTCCAATACCTGGCTTGC 59.744 55.000 0.00 0.00 45.98 4.01
123 124 1.097547 CCTCCAATACCTGGCTTGCG 61.098 60.000 0.00 0.00 45.98 4.85
124 125 1.718757 CTCCAATACCTGGCTTGCGC 61.719 60.000 0.00 0.00 45.98 6.09
125 126 1.750399 CCAATACCTGGCTTGCGCT 60.750 57.895 9.73 0.00 38.76 5.92
126 127 1.718757 CCAATACCTGGCTTGCGCTC 61.719 60.000 9.73 0.00 38.76 5.03
127 128 1.815421 AATACCTGGCTTGCGCTCG 60.815 57.895 9.73 0.00 36.09 5.03
128 129 3.740128 ATACCTGGCTTGCGCTCGG 62.740 63.158 9.73 2.26 36.09 4.63
131 132 4.749310 CTGGCTTGCGCTCGGTCT 62.749 66.667 9.73 0.00 36.09 3.85
132 133 4.314440 TGGCTTGCGCTCGGTCTT 62.314 61.111 9.73 0.00 36.09 3.01
133 134 3.050275 GGCTTGCGCTCGGTCTTT 61.050 61.111 9.73 0.00 36.09 2.52
134 135 2.174349 GCTTGCGCTCGGTCTTTG 59.826 61.111 9.73 0.00 0.00 2.77
135 136 2.174349 CTTGCGCTCGGTCTTTGC 59.826 61.111 9.73 0.00 0.00 3.68
140 141 3.127533 GCTCGGTCTTTGCGCCAT 61.128 61.111 4.18 0.00 0.00 4.40
141 142 2.787249 CTCGGTCTTTGCGCCATG 59.213 61.111 4.18 0.00 0.00 3.66
142 143 2.745884 TCGGTCTTTGCGCCATGG 60.746 61.111 7.63 7.63 0.00 3.66
143 144 3.814268 CGGTCTTTGCGCCATGGG 61.814 66.667 15.13 4.77 0.00 4.00
144 145 4.133796 GGTCTTTGCGCCATGGGC 62.134 66.667 15.13 15.60 46.75 5.36
156 157 4.424711 ATGGGCGCAACGGGTCAT 62.425 61.111 10.83 0.00 0.00 3.06
158 159 4.778143 GGGCGCAACGGGTCATCT 62.778 66.667 10.83 0.00 0.00 2.90
159 160 2.185867 GGCGCAACGGGTCATCTA 59.814 61.111 10.83 0.00 0.00 1.98
160 161 1.883084 GGCGCAACGGGTCATCTAG 60.883 63.158 10.83 0.00 0.00 2.43
177 178 8.422566 GGTCATCTAGTAAGGCTAAAAGTATGT 58.577 37.037 0.00 0.00 0.00 2.29
271 276 5.571784 ACAAGGATGCAAATGATGTACTG 57.428 39.130 0.00 0.00 0.00 2.74
272 277 4.142315 ACAAGGATGCAAATGATGTACTGC 60.142 41.667 0.00 0.00 35.32 4.40
297 303 2.179427 TGAGAGAAGAAGCCGGATTCA 58.821 47.619 32.26 9.65 0.00 2.57
298 304 2.167281 TGAGAGAAGAAGCCGGATTCAG 59.833 50.000 32.26 0.00 0.00 3.02
326 332 3.132646 CCCAGTCTGATGAAGAGGAAGAG 59.867 52.174 0.00 0.00 34.84 2.85
329 335 4.465660 CAGTCTGATGAAGAGGAAGAGGAA 59.534 45.833 0.00 0.00 34.84 3.36
372 378 1.228552 TGCCAGGAAGAAGTTGCCC 60.229 57.895 0.00 0.00 0.00 5.36
501 508 1.153901 CGCCGTACGTCAAGATGGT 60.154 57.895 15.21 0.00 36.87 3.55
503 510 0.997196 GCCGTACGTCAAGATGGTTC 59.003 55.000 15.21 0.00 0.00 3.62
504 511 1.636988 CCGTACGTCAAGATGGTTCC 58.363 55.000 15.21 0.00 0.00 3.62
506 513 0.997196 GTACGTCAAGATGGTTCCGC 59.003 55.000 0.00 0.00 0.00 5.54
508 515 0.036388 ACGTCAAGATGGTTCCGCAT 60.036 50.000 0.00 0.00 0.00 4.73
558 571 3.722101 TCTTCCCCTGACTTTTTCCTTCT 59.278 43.478 0.00 0.00 0.00 2.85
567 580 2.165998 CTTTTTCCTTCTCTGGCCTGG 58.834 52.381 10.07 0.00 0.00 4.45
571 584 1.676967 CCTTCTCTGGCCTGGCAAC 60.677 63.158 22.05 4.31 0.00 4.17
572 585 1.676967 CTTCTCTGGCCTGGCAACC 60.677 63.158 22.05 3.49 0.00 3.77
575 588 3.506743 TCTGGCCTGGCAACCCAA 61.507 61.111 22.05 0.00 41.58 4.12
576 589 2.993264 CTGGCCTGGCAACCCAAG 60.993 66.667 22.05 3.84 41.58 3.61
577 590 3.815407 CTGGCCTGGCAACCCAAGT 62.815 63.158 22.05 0.00 41.58 3.16
578 591 2.991540 GGCCTGGCAACCCAAGTC 60.992 66.667 22.05 0.00 41.58 3.01
579 592 3.365265 GCCTGGCAACCCAAGTCG 61.365 66.667 15.17 0.00 41.58 4.18
580 593 2.113139 CCTGGCAACCCAAGTCGT 59.887 61.111 0.00 0.00 41.58 4.34
582 595 1.654220 CTGGCAACCCAAGTCGTTG 59.346 57.895 0.00 0.00 41.58 4.10
586 599 1.523758 GCAACCCAAGTCGTTGATCT 58.476 50.000 4.93 0.00 42.63 2.75
605 618 9.604626 GTTGATCTAAAGAAACTGAATGAAGTG 57.395 33.333 0.00 0.00 0.00 3.16
611 624 9.219603 CTAAAGAAACTGAATGAAGTGGATGTA 57.780 33.333 0.00 0.00 0.00 2.29
616 629 5.880901 ACTGAATGAAGTGGATGTAACCTT 58.119 37.500 0.00 0.00 0.00 3.50
630 643 1.884235 AACCTTGCACTGCTGACTAC 58.116 50.000 1.98 0.00 0.00 2.73
675 688 4.065088 GTGTGCTTCCAATCAGTTCAGTA 58.935 43.478 0.00 0.00 0.00 2.74
676 689 4.515191 GTGTGCTTCCAATCAGTTCAGTAA 59.485 41.667 0.00 0.00 0.00 2.24
677 690 5.182001 GTGTGCTTCCAATCAGTTCAGTAAT 59.818 40.000 0.00 0.00 0.00 1.89
678 691 5.769662 TGTGCTTCCAATCAGTTCAGTAATT 59.230 36.000 0.00 0.00 0.00 1.40
679 692 6.072508 TGTGCTTCCAATCAGTTCAGTAATTC 60.073 38.462 0.00 0.00 0.00 2.17
680 693 6.003326 TGCTTCCAATCAGTTCAGTAATTCA 58.997 36.000 0.00 0.00 0.00 2.57
681 694 6.149973 TGCTTCCAATCAGTTCAGTAATTCAG 59.850 38.462 0.00 0.00 0.00 3.02
682 695 6.150140 GCTTCCAATCAGTTCAGTAATTCAGT 59.850 38.462 0.00 0.00 0.00 3.41
683 696 7.625185 GCTTCCAATCAGTTCAGTAATTCAGTC 60.625 40.741 0.00 0.00 0.00 3.51
684 697 7.009179 TCCAATCAGTTCAGTAATTCAGTCT 57.991 36.000 0.00 0.00 0.00 3.24
685 698 6.875726 TCCAATCAGTTCAGTAATTCAGTCTG 59.124 38.462 0.00 0.00 0.00 3.51
686 699 6.652481 CCAATCAGTTCAGTAATTCAGTCTGT 59.348 38.462 0.00 0.00 0.00 3.41
687 700 7.173907 CCAATCAGTTCAGTAATTCAGTCTGTT 59.826 37.037 0.00 0.00 0.00 3.16
688 701 7.897575 ATCAGTTCAGTAATTCAGTCTGTTC 57.102 36.000 0.00 0.00 0.00 3.18
689 702 6.223852 TCAGTTCAGTAATTCAGTCTGTTCC 58.776 40.000 0.00 0.00 0.00 3.62
690 703 6.042093 TCAGTTCAGTAATTCAGTCTGTTCCT 59.958 38.462 0.00 0.00 0.00 3.36
691 704 6.708054 CAGTTCAGTAATTCAGTCTGTTCCTT 59.292 38.462 0.00 0.00 0.00 3.36
692 705 6.708054 AGTTCAGTAATTCAGTCTGTTCCTTG 59.292 38.462 0.00 0.00 0.00 3.61
694 707 4.154918 CAGTAATTCAGTCTGTTCCTTGGC 59.845 45.833 0.00 0.00 0.00 4.52
700 713 1.346068 AGTCTGTTCCTTGGCTCTGAC 59.654 52.381 10.29 10.29 0.00 3.51
703 716 0.108585 TGTTCCTTGGCTCTGACCAC 59.891 55.000 0.00 0.00 40.19 4.16
712 725 1.073199 CTCTGACCACACCAACCCC 59.927 63.158 0.00 0.00 0.00 4.95
821 1090 2.094675 GCTTAGTGTGCCATCCAATGT 58.905 47.619 0.00 0.00 0.00 2.71
828 1097 4.218417 AGTGTGCCATCCAATGTAGAAAAC 59.782 41.667 0.00 0.00 0.00 2.43
930 1206 6.016777 GGAGTCGACGAGTTTATTTATAGGGA 60.017 42.308 10.46 0.00 0.00 4.20
976 1256 3.219117 CGCGAGCTGATCATCACG 58.781 61.111 11.32 11.32 0.00 4.35
1016 1296 1.299648 CGATGGCCTCCACCAAGAA 59.700 57.895 3.32 0.00 44.65 2.52
1017 1297 0.745845 CGATGGCCTCCACCAAGAAG 60.746 60.000 3.32 0.00 44.65 2.85
1188 1468 1.202818 AGGCAGTTCAACTTCACCTCC 60.203 52.381 0.00 0.00 0.00 4.30
1241 2324 2.162921 CTTCAGCAGGCACGTGAACG 62.163 60.000 22.23 6.96 46.33 3.95
1304 2423 1.153939 CGTCGTGAAGGAGAGGCTG 60.154 63.158 0.00 0.00 0.00 4.85
2079 4461 4.537433 GCCCTCGCCTGAATCGCT 62.537 66.667 0.00 0.00 0.00 4.93
2977 5360 5.999205 ATGGTCAATGCCAAAGAAACATA 57.001 34.783 0.91 0.00 42.48 2.29
3005 5388 1.066914 CAAGACAGTCTTCAGCGAGC 58.933 55.000 13.27 0.00 33.78 5.03
3339 5722 9.474920 TTCTTTGATATGTTCATTGTGTTTTCC 57.525 29.630 0.00 0.00 33.34 3.13
5941 10640 3.697166 ACTAACCGCAATTCCTCCAATT 58.303 40.909 0.00 0.00 34.79 2.32
6335 11036 2.901338 AGGTGGTGTACTCAGCTCTA 57.099 50.000 13.14 0.00 38.41 2.43
6389 11090 1.214589 CCTCGGTTTCGTCGTCCAT 59.785 57.895 0.00 0.00 37.69 3.41
6469 11171 8.393671 ACTTACGGGTTCATATTTTTGTACAA 57.606 30.769 3.59 3.59 0.00 2.41
6832 11537 5.180271 TCTTTTTGTGGTACGACTGAGTTT 58.820 37.500 9.54 0.00 0.00 2.66
6833 11538 5.644636 TCTTTTTGTGGTACGACTGAGTTTT 59.355 36.000 9.54 0.00 0.00 2.43
6940 11680 3.121030 GGACGCTTGCACATCGCT 61.121 61.111 0.00 0.00 43.06 4.93
6993 11733 5.347093 CACGTATGAATAGATGACATCAGCC 59.653 44.000 17.57 4.56 31.57 4.85
7104 11845 5.411977 TCGACGAGATCTTCAAAACTAGACT 59.588 40.000 0.00 0.00 0.00 3.24
7269 12014 3.437049 GCAACTCCAGTACTTTGACCATC 59.563 47.826 8.83 0.00 0.00 3.51
8479 15986 2.897271 ACATAGTGGGCCATGTTGAA 57.103 45.000 10.70 0.00 31.32 2.69
8523 16030 0.248907 TCAGATACTAGTTGCGCGCC 60.249 55.000 30.77 14.69 0.00 6.53
8551 16058 3.704566 GGTTAGGAAAAATCCATGTCCCC 59.295 47.826 0.00 0.00 0.00 4.81
8552 16059 2.143876 AGGAAAAATCCATGTCCCCG 57.856 50.000 0.00 0.00 0.00 5.73
8553 16060 1.111277 GGAAAAATCCATGTCCCCGG 58.889 55.000 0.00 0.00 0.00 5.73
8554 16061 1.618616 GGAAAAATCCATGTCCCCGGT 60.619 52.381 0.00 0.00 0.00 5.28
8555 16062 1.749063 GAAAAATCCATGTCCCCGGTC 59.251 52.381 0.00 0.00 0.00 4.79
8556 16063 0.393808 AAAATCCATGTCCCCGGTCG 60.394 55.000 0.00 0.00 0.00 4.79
8557 16064 1.268992 AAATCCATGTCCCCGGTCGA 61.269 55.000 0.00 0.00 0.00 4.20
8558 16065 1.968050 AATCCATGTCCCCGGTCGAC 61.968 60.000 7.13 7.13 0.00 4.20
8559 16066 4.157120 CCATGTCCCCGGTCGACC 62.157 72.222 25.28 25.28 0.00 4.79
8562 16069 3.918328 ATGTCCCCGGTCGACCCTT 62.918 63.158 28.52 9.47 0.00 3.95
8797 16732 3.998341 GGACGCCTACAACTAAATCAACA 59.002 43.478 0.00 0.00 0.00 3.33
8799 16734 5.123344 GGACGCCTACAACTAAATCAACAAT 59.877 40.000 0.00 0.00 0.00 2.71
8825 16787 1.189752 TTGTGTGCTTGCTTCCCAAA 58.810 45.000 0.00 0.00 31.94 3.28
8826 16788 1.412079 TGTGTGCTTGCTTCCCAAAT 58.588 45.000 0.00 0.00 31.94 2.32
8827 16789 1.340889 TGTGTGCTTGCTTCCCAAATC 59.659 47.619 0.00 0.00 31.94 2.17
8828 16790 0.968405 TGTGCTTGCTTCCCAAATCC 59.032 50.000 0.00 0.00 31.94 3.01
8829 16791 0.247460 GTGCTTGCTTCCCAAATCCC 59.753 55.000 0.00 0.00 31.94 3.85
8830 16792 0.178938 TGCTTGCTTCCCAAATCCCA 60.179 50.000 0.00 0.00 31.94 4.37
8831 16793 0.975887 GCTTGCTTCCCAAATCCCAA 59.024 50.000 0.00 0.00 31.94 4.12
8832 16794 1.338105 GCTTGCTTCCCAAATCCCAAC 60.338 52.381 0.00 0.00 31.94 3.77
8840 16802 4.147667 TCCCAAATCCCAACCCAATAAA 57.852 40.909 0.00 0.00 0.00 1.40
8873 16840 3.118775 CCTCCAAGTATGTCGATGGTGAA 60.119 47.826 4.53 0.00 34.50 3.18
8874 16841 4.503910 CTCCAAGTATGTCGATGGTGAAA 58.496 43.478 0.66 0.00 34.50 2.69
8901 17918 2.022129 GTGAGCAAGGACGTGGACG 61.022 63.158 0.00 0.00 46.33 4.79
9061 19149 1.154727 CACGCCGACACGCTTTTAC 60.155 57.895 0.00 0.00 36.19 2.01
9088 19176 4.879598 TCTTTCAAAGAGGAAGGTCGTAC 58.120 43.478 0.00 0.00 32.71 3.67
9101 19189 1.379977 TCGTACCTCCTGGCCTCTG 60.380 63.158 3.32 0.00 36.63 3.35
9107 19195 0.324285 CCTCCTGGCCTCTGCATATC 59.676 60.000 3.32 0.00 40.13 1.63
9131 19219 7.392418 TCCATGATTTGATTAAAATTGGCACA 58.608 30.769 0.00 0.00 38.64 4.57
9132 19220 7.333921 TCCATGATTTGATTAAAATTGGCACAC 59.666 33.333 0.00 0.00 38.64 3.82
9133 19221 7.119407 CCATGATTTGATTAAAATTGGCACACA 59.881 33.333 0.00 0.00 38.64 3.72
9134 19222 8.670135 CATGATTTGATTAAAATTGGCACACAT 58.330 29.630 0.00 0.00 38.64 3.21
9137 19225 8.618702 ATTTGATTAAAATTGGCACACATCAA 57.381 26.923 0.00 0.00 39.29 2.57
9139 19227 5.632764 TGATTAAAATTGGCACACATCAACG 59.367 36.000 0.00 0.00 39.29 4.10
9141 19229 2.995466 AATTGGCACACATCAACGAG 57.005 45.000 0.00 0.00 39.29 4.18
9142 19230 1.896220 ATTGGCACACATCAACGAGT 58.104 45.000 0.00 0.00 39.29 4.18
9143 19231 1.225855 TTGGCACACATCAACGAGTC 58.774 50.000 0.00 0.00 39.29 3.36
9145 19233 1.616374 TGGCACACATCAACGAGTCTA 59.384 47.619 0.00 0.00 0.00 2.59
9146 19234 2.036604 TGGCACACATCAACGAGTCTAA 59.963 45.455 0.00 0.00 0.00 2.10
9147 19235 3.064207 GGCACACATCAACGAGTCTAAA 58.936 45.455 0.00 0.00 0.00 1.85
9149 19237 4.455124 GCACACATCAACGAGTCTAAAAC 58.545 43.478 0.00 0.00 0.00 2.43
9152 19240 6.299604 CACACATCAACGAGTCTAAAACATC 58.700 40.000 0.00 0.00 0.00 3.06
9153 19241 6.146184 CACACATCAACGAGTCTAAAACATCT 59.854 38.462 0.00 0.00 0.00 2.90
9154 19242 7.328493 CACACATCAACGAGTCTAAAACATCTA 59.672 37.037 0.00 0.00 0.00 1.98
9155 19243 8.035394 ACACATCAACGAGTCTAAAACATCTAT 58.965 33.333 0.00 0.00 0.00 1.98
9181 19269 8.922058 AATAATACTCCTAGTACACAACAACG 57.078 34.615 0.00 0.00 32.84 4.10
9183 19271 7.452880 AATACTCCTAGTACACAACAACGTA 57.547 36.000 0.00 0.00 32.84 3.57
9184 19272 5.113502 ACTCCTAGTACACAACAACGTAC 57.886 43.478 0.00 0.00 38.61 3.67
9186 19274 3.058293 TCCTAGTACACAACAACGTACGG 60.058 47.826 21.06 5.00 42.26 4.02
9187 19275 1.490621 AGTACACAACAACGTACGGC 58.509 50.000 21.06 0.00 42.26 5.68
9188 19276 1.202394 AGTACACAACAACGTACGGCA 60.202 47.619 21.06 0.00 42.26 5.69
9189 19277 1.190763 GTACACAACAACGTACGGCAG 59.809 52.381 21.06 11.05 0.00 4.85
9191 19279 0.931702 CACAACAACGTACGGCAGAA 59.068 50.000 21.06 0.00 0.00 3.02
9193 19281 0.233848 CAACAACGTACGGCAGAACC 59.766 55.000 21.06 0.00 0.00 3.62
9194 19282 0.179078 AACAACGTACGGCAGAACCA 60.179 50.000 21.06 0.00 39.03 3.67
9196 19284 0.511221 CAACGTACGGCAGAACCAAG 59.489 55.000 21.06 0.00 39.03 3.61
9197 19285 0.390124 AACGTACGGCAGAACCAAGA 59.610 50.000 21.06 0.00 39.03 3.02
9198 19286 0.319297 ACGTACGGCAGAACCAAGAC 60.319 55.000 21.06 0.00 39.03 3.01
9199 19287 0.319211 CGTACGGCAGAACCAAGACA 60.319 55.000 7.57 0.00 39.03 3.41
9201 19289 1.798813 GTACGGCAGAACCAAGACAAG 59.201 52.381 0.00 0.00 39.03 3.16
9202 19290 0.535102 ACGGCAGAACCAAGACAAGG 60.535 55.000 0.00 0.00 39.03 3.61
9204 19292 0.823356 GGCAGAACCAAGACAAGGCA 60.823 55.000 0.00 0.00 38.86 4.75
9206 19294 1.679139 CAGAACCAAGACAAGGCACA 58.321 50.000 0.00 0.00 0.00 4.57
9207 19295 2.023673 CAGAACCAAGACAAGGCACAA 58.976 47.619 0.00 0.00 0.00 3.33
9208 19296 2.024414 AGAACCAAGACAAGGCACAAC 58.976 47.619 0.00 0.00 0.00 3.32
9209 19297 1.067060 GAACCAAGACAAGGCACAACC 59.933 52.381 0.00 0.00 39.61 3.77
9223 19311 3.623510 GGCACAACCTAAATCTCTACAGC 59.376 47.826 0.00 0.00 34.51 4.40
9224 19312 4.508662 GCACAACCTAAATCTCTACAGCT 58.491 43.478 0.00 0.00 0.00 4.24
9226 19314 6.106673 GCACAACCTAAATCTCTACAGCTAA 58.893 40.000 0.00 0.00 0.00 3.09
9227 19315 6.256757 GCACAACCTAAATCTCTACAGCTAAG 59.743 42.308 0.00 0.00 0.00 2.18
9228 19316 7.324178 CACAACCTAAATCTCTACAGCTAAGT 58.676 38.462 0.00 0.00 0.00 2.24
9229 19317 7.819900 CACAACCTAAATCTCTACAGCTAAGTT 59.180 37.037 0.00 0.00 0.00 2.66
9241 19329 9.738832 CTCTACAGCTAAGTTATACTTTCTTCC 57.261 37.037 0.00 0.00 39.51 3.46
9242 19330 9.251440 TCTACAGCTAAGTTATACTTTCTTCCA 57.749 33.333 0.00 0.00 39.51 3.53
9252 19340 8.903820 AGTTATACTTTCTTCCATAACAATGCC 58.096 33.333 0.00 0.00 36.67 4.40
9253 19341 8.903820 GTTATACTTTCTTCCATAACAATGCCT 58.096 33.333 0.00 0.00 35.11 4.75
9254 19342 7.961326 ATACTTTCTTCCATAACAATGCCTT 57.039 32.000 0.00 0.00 0.00 4.35
9256 19344 5.774690 ACTTTCTTCCATAACAATGCCTTCA 59.225 36.000 0.00 0.00 0.00 3.02
9258 19346 5.902613 TCTTCCATAACAATGCCTTCAAG 57.097 39.130 0.00 0.00 0.00 3.02
9259 19347 5.569355 TCTTCCATAACAATGCCTTCAAGA 58.431 37.500 0.00 0.00 0.00 3.02
9262 19350 5.569355 TCCATAACAATGCCTTCAAGAAGA 58.431 37.500 11.25 0.00 40.79 2.87
9264 19352 5.649395 CCATAACAATGCCTTCAAGAAGAGA 59.351 40.000 11.25 0.00 40.79 3.10
9265 19353 6.183360 CCATAACAATGCCTTCAAGAAGAGAG 60.183 42.308 11.25 0.00 40.79 3.20
9266 19354 4.630644 ACAATGCCTTCAAGAAGAGAGA 57.369 40.909 11.25 0.00 40.79 3.10
9267 19355 4.978099 ACAATGCCTTCAAGAAGAGAGAA 58.022 39.130 11.25 0.00 40.79 2.87
9270 19358 3.733337 TGCCTTCAAGAAGAGAGAACAC 58.267 45.455 11.25 0.00 40.79 3.32
9271 19359 3.134623 TGCCTTCAAGAAGAGAGAACACA 59.865 43.478 11.25 0.00 40.79 3.72
9274 19362 4.509600 CCTTCAAGAAGAGAGAACACACAC 59.490 45.833 11.25 0.00 40.79 3.82
9275 19363 3.706698 TCAAGAAGAGAGAACACACACG 58.293 45.455 0.00 0.00 0.00 4.49
9276 19364 3.130516 TCAAGAAGAGAGAACACACACGT 59.869 43.478 0.00 0.00 0.00 4.49
9277 19365 8.131728 CTTCAAGAAGAGAGAACACACACGTG 62.132 46.154 15.48 15.48 43.74 4.49
9291 19379 4.659874 CGTGCCAACGTCGCCAAC 62.660 66.667 5.24 0.00 44.93 3.77
9292 19380 3.276846 GTGCCAACGTCGCCAACT 61.277 61.111 5.24 0.00 0.00 3.16
9295 19383 1.373748 GCCAACGTCGCCAACTCTA 60.374 57.895 0.00 0.00 0.00 2.43
9296 19384 1.352156 GCCAACGTCGCCAACTCTAG 61.352 60.000 0.00 0.00 0.00 2.43
9297 19385 1.352156 CCAACGTCGCCAACTCTAGC 61.352 60.000 0.00 0.00 0.00 3.42
9298 19386 0.666274 CAACGTCGCCAACTCTAGCA 60.666 55.000 0.00 0.00 0.00 3.49
9299 19387 0.666577 AACGTCGCCAACTCTAGCAC 60.667 55.000 0.00 0.00 0.00 4.40
9300 19388 2.152699 CGTCGCCAACTCTAGCACG 61.153 63.158 0.00 0.00 0.00 5.34
9302 19390 1.080772 TCGCCAACTCTAGCACGTG 60.081 57.895 12.28 12.28 0.00 4.49
9303 19391 2.094659 CGCCAACTCTAGCACGTGG 61.095 63.158 18.88 2.06 0.00 4.94
9304 19392 2.391389 GCCAACTCTAGCACGTGGC 61.391 63.158 18.88 9.78 45.30 5.01
9313 19401 2.740826 GCACGTGGCGGCTAGAAA 60.741 61.111 18.88 0.00 0.00 2.52
9314 19402 3.023591 GCACGTGGCGGCTAGAAAC 62.024 63.158 18.88 0.00 0.00 2.78
9315 19403 1.666553 CACGTGGCGGCTAGAAACA 60.667 57.895 11.43 0.00 0.00 2.83
9316 19404 1.070105 ACGTGGCGGCTAGAAACAA 59.930 52.632 11.43 0.00 0.00 2.83
9317 19405 0.533308 ACGTGGCGGCTAGAAACAAA 60.533 50.000 11.43 0.00 0.00 2.83
9318 19406 0.589223 CGTGGCGGCTAGAAACAAAA 59.411 50.000 11.43 0.00 0.00 2.44
9319 19407 1.002251 CGTGGCGGCTAGAAACAAAAA 60.002 47.619 11.43 0.00 0.00 1.94
9320 19408 2.351350 CGTGGCGGCTAGAAACAAAAAT 60.351 45.455 11.43 0.00 0.00 1.82
9321 19409 3.120130 CGTGGCGGCTAGAAACAAAAATA 60.120 43.478 11.43 0.00 0.00 1.40
9323 19411 5.407502 GTGGCGGCTAGAAACAAAAATATT 58.592 37.500 11.43 0.00 0.00 1.28
9324 19412 5.867174 GTGGCGGCTAGAAACAAAAATATTT 59.133 36.000 11.43 0.00 0.00 1.40
9326 19414 6.588373 TGGCGGCTAGAAACAAAAATATTTTC 59.412 34.615 13.68 1.62 0.00 2.29
9329 19417 7.277760 GCGGCTAGAAACAAAAATATTTTCCAT 59.722 33.333 13.68 1.72 30.82 3.41
9330 19418 8.807581 CGGCTAGAAACAAAAATATTTTCCATC 58.192 33.333 13.68 9.89 30.82 3.51
9331 19419 8.807581 GGCTAGAAACAAAAATATTTTCCATCG 58.192 33.333 13.68 3.94 30.82 3.84
9336 19424 7.665561 AACAAAAATATTTTCCATCGTTGGG 57.334 32.000 13.68 0.00 43.81 4.12
9337 19425 6.764379 ACAAAAATATTTTCCATCGTTGGGT 58.236 32.000 13.68 0.29 43.81 4.51
9338 19426 7.220740 ACAAAAATATTTTCCATCGTTGGGTT 58.779 30.769 13.68 0.00 43.81 4.11
9340 19428 6.597832 AAATATTTTCCATCGTTGGGTTCA 57.402 33.333 12.54 0.00 43.81 3.18
9341 19429 6.597832 AATATTTTCCATCGTTGGGTTCAA 57.402 33.333 12.54 0.00 43.81 2.69
9353 19441 4.599047 TTGGGTTCAACAAATCATGTCC 57.401 40.909 0.00 0.00 42.99 4.02
9354 19442 3.570540 TGGGTTCAACAAATCATGTCCA 58.429 40.909 0.00 0.00 42.99 4.02
9355 19443 3.320541 TGGGTTCAACAAATCATGTCCAC 59.679 43.478 0.00 0.00 42.99 4.02
9356 19444 3.320541 GGGTTCAACAAATCATGTCCACA 59.679 43.478 0.00 0.00 42.99 4.17
9357 19445 4.021192 GGGTTCAACAAATCATGTCCACAT 60.021 41.667 0.00 0.00 42.99 3.21
9360 19448 6.215121 GTTCAACAAATCATGTCCACATCAA 58.785 36.000 0.00 0.00 42.99 2.57
9362 19450 5.535783 TCAACAAATCATGTCCACATCAACT 59.464 36.000 0.00 0.00 42.99 3.16
9363 19451 5.633830 ACAAATCATGTCCACATCAACTC 57.366 39.130 0.00 0.00 37.96 3.01
9364 19452 5.072055 ACAAATCATGTCCACATCAACTCA 58.928 37.500 0.00 0.00 37.96 3.41
9365 19453 5.713389 ACAAATCATGTCCACATCAACTCAT 59.287 36.000 0.00 0.00 37.96 2.90
9366 19454 6.127814 ACAAATCATGTCCACATCAACTCATC 60.128 38.462 0.00 0.00 37.96 2.92
9367 19455 4.831674 TCATGTCCACATCAACTCATCT 57.168 40.909 0.00 0.00 33.61 2.90
9368 19456 4.510571 TCATGTCCACATCAACTCATCTG 58.489 43.478 0.00 0.00 33.61 2.90
9369 19457 2.703416 TGTCCACATCAACTCATCTGC 58.297 47.619 0.00 0.00 0.00 4.26
9371 19459 2.676839 GTCCACATCAACTCATCTGCAG 59.323 50.000 7.63 7.63 0.00 4.41
9374 19462 0.656259 CATCAACTCATCTGCAGCCG 59.344 55.000 9.47 1.89 0.00 5.52
9376 19464 2.110967 CAACTCATCTGCAGCCGGG 61.111 63.158 9.47 4.52 0.00 5.73
9377 19465 3.984193 AACTCATCTGCAGCCGGGC 62.984 63.158 12.11 12.11 0.00 6.13
9386 19474 2.888447 GCAGCCGGGCCTCTCATAT 61.888 63.158 17.02 0.00 0.00 1.78
9387 19475 1.294780 CAGCCGGGCCTCTCATATC 59.705 63.158 17.02 0.00 0.00 1.63
9389 19477 2.973899 CCGGGCCTCTCATATCCG 59.026 66.667 0.84 0.00 40.32 4.18
9391 19479 1.587054 CGGGCCTCTCATATCCGTC 59.413 63.158 0.84 0.00 36.38 4.79
9393 19481 0.892063 GGGCCTCTCATATCCGTCTC 59.108 60.000 0.84 0.00 0.00 3.36
9394 19482 1.621992 GGCCTCTCATATCCGTCTCA 58.378 55.000 0.00 0.00 0.00 3.27
9396 19484 2.365617 GGCCTCTCATATCCGTCTCAAA 59.634 50.000 0.00 0.00 0.00 2.69
9397 19485 3.385577 GCCTCTCATATCCGTCTCAAAC 58.614 50.000 0.00 0.00 0.00 2.93
9406 19494 3.179433 CGTCTCAAACGCTCAGACA 57.821 52.632 0.00 0.00 45.76 3.41
9408 19496 1.335051 CGTCTCAAACGCTCAGACAGA 60.335 52.381 0.00 0.00 45.76 3.41
9409 19497 2.669670 CGTCTCAAACGCTCAGACAGAT 60.670 50.000 0.00 0.00 45.76 2.90
9410 19498 2.665537 GTCTCAAACGCTCAGACAGATG 59.334 50.000 0.00 0.00 37.17 2.90
9411 19499 1.998315 CTCAAACGCTCAGACAGATGG 59.002 52.381 0.00 0.00 0.00 3.51
9412 19500 1.344438 TCAAACGCTCAGACAGATGGT 59.656 47.619 0.00 0.00 0.00 3.55
9421 19509 2.277858 GACAGATGGTCCGGTCAGT 58.722 57.895 0.00 0.00 40.83 3.41
9422 19510 0.108615 GACAGATGGTCCGGTCAGTG 60.109 60.000 0.00 6.29 40.83 3.66
9453 19541 3.592898 AAAAATTGAACCAGCCGGATC 57.407 42.857 5.05 0.00 34.69 3.36
9455 19543 2.044123 AATTGAACCAGCCGGATCTC 57.956 50.000 5.05 0.00 35.16 2.75
9456 19544 1.207791 ATTGAACCAGCCGGATCTCT 58.792 50.000 5.05 0.00 35.16 3.10
9457 19545 0.537188 TTGAACCAGCCGGATCTCTC 59.463 55.000 5.05 0.00 35.16 3.20
9458 19546 0.614697 TGAACCAGCCGGATCTCTCA 60.615 55.000 5.05 0.00 35.16 3.27
9459 19547 0.537188 GAACCAGCCGGATCTCTCAA 59.463 55.000 5.05 0.00 35.59 3.02
9460 19548 0.984230 AACCAGCCGGATCTCTCAAA 59.016 50.000 5.05 0.00 35.59 2.69
9462 19550 0.539051 CCAGCCGGATCTCTCAAACT 59.461 55.000 5.05 0.00 0.00 2.66
9463 19551 1.757118 CCAGCCGGATCTCTCAAACTA 59.243 52.381 5.05 0.00 0.00 2.24
9464 19552 2.482142 CCAGCCGGATCTCTCAAACTAC 60.482 54.545 5.05 0.00 0.00 2.73
9467 19555 2.427453 GCCGGATCTCTCAAACTACAGA 59.573 50.000 5.05 0.00 0.00 3.41
9468 19556 3.735514 GCCGGATCTCTCAAACTACAGAC 60.736 52.174 5.05 0.00 0.00 3.51
9469 19557 3.487711 CCGGATCTCTCAAACTACAGACG 60.488 52.174 0.00 0.00 0.00 4.18
9470 19558 3.374367 CGGATCTCTCAAACTACAGACGA 59.626 47.826 0.00 0.00 0.00 4.20
9472 19560 5.449314 CGGATCTCTCAAACTACAGACGAAT 60.449 44.000 0.00 0.00 0.00 3.34
9473 19561 5.746245 GGATCTCTCAAACTACAGACGAATG 59.254 44.000 0.00 0.00 0.00 2.67
9474 19562 5.707242 TCTCTCAAACTACAGACGAATGT 57.293 39.130 0.00 0.00 37.19 2.71
9486 19574 0.392461 ACGAATGTCGGGTTCATGGG 60.392 55.000 2.38 0.00 45.59 4.00
9487 19575 1.714899 CGAATGTCGGGTTCATGGGC 61.715 60.000 0.00 0.00 36.00 5.36
9488 19576 0.394352 GAATGTCGGGTTCATGGGCT 60.394 55.000 0.00 0.00 0.00 5.19
9489 19577 0.680921 AATGTCGGGTTCATGGGCTG 60.681 55.000 0.00 0.00 0.00 4.85
9490 19578 1.561769 ATGTCGGGTTCATGGGCTGA 61.562 55.000 0.00 0.00 0.00 4.26
9491 19579 1.745489 GTCGGGTTCATGGGCTGAC 60.745 63.158 0.00 0.00 32.17 3.51
9492 19580 2.438434 CGGGTTCATGGGCTGACC 60.438 66.667 0.00 0.00 40.81 4.02
9493 19581 2.438434 GGGTTCATGGGCTGACCG 60.438 66.667 0.00 0.00 44.64 4.79
9496 19584 3.645660 TTCATGGGCTGACCGGCA 61.646 61.111 0.00 0.00 44.64 5.69
9497 19585 3.918253 TTCATGGGCTGACCGGCAC 62.918 63.158 0.00 0.00 44.64 5.01
9504 19592 3.402681 CTGACCGGCACCCCTCAT 61.403 66.667 0.00 0.00 0.00 2.90
9505 19593 2.039787 TGACCGGCACCCCTCATA 59.960 61.111 0.00 0.00 0.00 2.15
9506 19594 1.383943 TGACCGGCACCCCTCATAT 60.384 57.895 0.00 0.00 0.00 1.78
9509 19597 2.146724 CCGGCACCCCTCATATCCA 61.147 63.158 0.00 0.00 0.00 3.41
9510 19598 1.372683 CGGCACCCCTCATATCCAG 59.627 63.158 0.00 0.00 0.00 3.86
9511 19599 1.073897 GGCACCCCTCATATCCAGC 59.926 63.158 0.00 0.00 0.00 4.85
9513 19601 1.763770 CACCCCTCATATCCAGCCC 59.236 63.158 0.00 0.00 0.00 5.19
9514 19602 1.061905 CACCCCTCATATCCAGCCCA 61.062 60.000 0.00 0.00 0.00 5.36
9517 19605 1.430464 CCCCTCATATCCAGCCCAAAT 59.570 52.381 0.00 0.00 0.00 2.32
9518 19606 2.522185 CCCTCATATCCAGCCCAAATG 58.478 52.381 0.00 0.00 0.00 2.32
9519 19607 2.158415 CCCTCATATCCAGCCCAAATGT 60.158 50.000 0.00 0.00 0.00 2.71
9520 19608 3.074390 CCCTCATATCCAGCCCAAATGTA 59.926 47.826 0.00 0.00 0.00 2.29
9521 19609 4.330250 CCTCATATCCAGCCCAAATGTAG 58.670 47.826 0.00 0.00 0.00 2.74
9522 19610 4.330250 CTCATATCCAGCCCAAATGTAGG 58.670 47.826 0.00 0.00 0.00 3.18
9530 19618 2.879103 CCCAAATGTAGGGCGGATAT 57.121 50.000 0.00 0.00 39.96 1.63
9531 19619 2.436417 CCCAAATGTAGGGCGGATATG 58.564 52.381 0.00 0.00 39.96 1.78
9534 19622 3.338249 CAAATGTAGGGCGGATATGAGG 58.662 50.000 0.00 0.00 0.00 3.86
9535 19623 2.327325 ATGTAGGGCGGATATGAGGT 57.673 50.000 0.00 0.00 0.00 3.85
9537 19625 2.803956 TGTAGGGCGGATATGAGGTAG 58.196 52.381 0.00 0.00 0.00 3.18
9538 19626 1.477295 GTAGGGCGGATATGAGGTAGC 59.523 57.143 0.00 0.00 0.00 3.58
9539 19627 0.905337 AGGGCGGATATGAGGTAGCC 60.905 60.000 0.00 0.00 43.47 3.93
9541 19629 1.215647 GCGGATATGAGGTAGCCCG 59.784 63.158 0.00 0.00 35.35 6.13
9542 19630 1.890894 CGGATATGAGGTAGCCCGG 59.109 63.158 0.00 0.00 35.35 5.73
9543 19631 1.605058 CGGATATGAGGTAGCCCGGG 61.605 65.000 19.09 19.09 35.35 5.73
9544 19632 0.252103 GGATATGAGGTAGCCCGGGA 60.252 60.000 29.31 0.00 32.52 5.14
9545 19633 0.896226 GATATGAGGTAGCCCGGGAC 59.104 60.000 29.31 15.30 35.12 4.46
9593 19681 3.879885 CCACCACGGACCCCACAA 61.880 66.667 0.00 0.00 36.56 3.33
9594 19682 2.193517 CACCACGGACCCCACAAA 59.806 61.111 0.00 0.00 0.00 2.83
9595 19683 1.454111 CACCACGGACCCCACAAAA 60.454 57.895 0.00 0.00 0.00 2.44
9596 19684 1.038130 CACCACGGACCCCACAAAAA 61.038 55.000 0.00 0.00 0.00 1.94
9618 19706 4.162690 AATCCGGGTGGCGAGCTC 62.163 66.667 2.73 2.73 34.14 4.09
9622 19710 2.668212 CGGGTGGCGAGCTCAAAA 60.668 61.111 15.40 0.00 0.00 2.44
9623 19711 2.954611 GGGTGGCGAGCTCAAAAC 59.045 61.111 15.40 7.78 0.00 2.43
9626 19714 1.172812 GGTGGCGAGCTCAAAACCTT 61.173 55.000 15.40 0.00 0.00 3.50
9627 19715 1.519408 GTGGCGAGCTCAAAACCTTA 58.481 50.000 15.40 0.00 0.00 2.69
9629 19717 0.448197 GGCGAGCTCAAAACCTTAGC 59.552 55.000 15.40 5.21 36.48 3.09
9634 19722 3.778954 AGCTCAAAACCTTAGCTCACT 57.221 42.857 0.00 0.00 42.89 3.41
9635 19723 4.092116 AGCTCAAAACCTTAGCTCACTT 57.908 40.909 0.00 0.00 42.89 3.16
9636 19724 4.464947 AGCTCAAAACCTTAGCTCACTTT 58.535 39.130 0.00 0.00 42.89 2.66
9638 19726 4.036852 GCTCAAAACCTTAGCTCACTTTGT 59.963 41.667 0.00 0.00 33.40 2.83
9639 19727 5.751243 TCAAAACCTTAGCTCACTTTGTC 57.249 39.130 0.00 0.00 0.00 3.18
9641 19729 2.861147 ACCTTAGCTCACTTTGTCCC 57.139 50.000 0.00 0.00 0.00 4.46
9642 19730 2.339769 ACCTTAGCTCACTTTGTCCCT 58.660 47.619 0.00 0.00 0.00 4.20
9643 19731 2.303311 ACCTTAGCTCACTTTGTCCCTC 59.697 50.000 0.00 0.00 0.00 4.30
9644 19732 2.569404 CCTTAGCTCACTTTGTCCCTCT 59.431 50.000 0.00 0.00 0.00 3.69
9646 19734 2.022718 AGCTCACTTTGTCCCTCTCT 57.977 50.000 0.00 0.00 0.00 3.10
9647 19735 2.334023 AGCTCACTTTGTCCCTCTCTT 58.666 47.619 0.00 0.00 0.00 2.85
9648 19736 2.708325 AGCTCACTTTGTCCCTCTCTTT 59.292 45.455 0.00 0.00 0.00 2.52
9650 19738 3.244387 GCTCACTTTGTCCCTCTCTTTCT 60.244 47.826 0.00 0.00 0.00 2.52
9651 19739 4.565022 CTCACTTTGTCCCTCTCTTTCTC 58.435 47.826 0.00 0.00 0.00 2.87
9652 19740 3.005897 TCACTTTGTCCCTCTCTTTCTCG 59.994 47.826 0.00 0.00 0.00 4.04
9653 19741 2.289133 ACTTTGTCCCTCTCTTTCTCGC 60.289 50.000 0.00 0.00 0.00 5.03
9656 19744 1.272203 TGTCCCTCTCTTTCTCGCTCT 60.272 52.381 0.00 0.00 0.00 4.09
9657 19745 1.134175 GTCCCTCTCTTTCTCGCTCTG 59.866 57.143 0.00 0.00 0.00 3.35
9658 19746 1.181786 CCCTCTCTTTCTCGCTCTGT 58.818 55.000 0.00 0.00 0.00 3.41
9659 19747 1.134175 CCCTCTCTTTCTCGCTCTGTC 59.866 57.143 0.00 0.00 0.00 3.51
9660 19748 1.134175 CCTCTCTTTCTCGCTCTGTCC 59.866 57.143 0.00 0.00 0.00 4.02
9661 19749 1.815613 CTCTCTTTCTCGCTCTGTCCA 59.184 52.381 0.00 0.00 0.00 4.02
9662 19750 1.542030 TCTCTTTCTCGCTCTGTCCAC 59.458 52.381 0.00 0.00 0.00 4.02
9663 19751 1.543802 CTCTTTCTCGCTCTGTCCACT 59.456 52.381 0.00 0.00 0.00 4.00
9666 19754 0.251386 TTCTCGCTCTGTCCACTCCT 60.251 55.000 0.00 0.00 0.00 3.69
9668 19756 0.679640 CTCGCTCTGTCCACTCCTCT 60.680 60.000 0.00 0.00 0.00 3.69
9671 19759 1.326951 GCTCTGTCCACTCCTCTCCC 61.327 65.000 0.00 0.00 0.00 4.30
9673 19761 0.333312 TCTGTCCACTCCTCTCCCTC 59.667 60.000 0.00 0.00 0.00 4.30
9674 19762 0.040351 CTGTCCACTCCTCTCCCTCA 59.960 60.000 0.00 0.00 0.00 3.86
9675 19763 0.251832 TGTCCACTCCTCTCCCTCAC 60.252 60.000 0.00 0.00 0.00 3.51
9676 19764 0.251832 GTCCACTCCTCTCCCTCACA 60.252 60.000 0.00 0.00 0.00 3.58
9677 19765 0.251832 TCCACTCCTCTCCCTCACAC 60.252 60.000 0.00 0.00 0.00 3.82
9678 19766 0.252012 CCACTCCTCTCCCTCACACT 60.252 60.000 0.00 0.00 0.00 3.55
9679 19767 1.638529 CACTCCTCTCCCTCACACTT 58.361 55.000 0.00 0.00 0.00 3.16
9680 19768 1.974236 CACTCCTCTCCCTCACACTTT 59.026 52.381 0.00 0.00 0.00 2.66
9681 19769 2.028567 CACTCCTCTCCCTCACACTTTC 60.029 54.545 0.00 0.00 0.00 2.62
9682 19770 1.552792 CTCCTCTCCCTCACACTTTCC 59.447 57.143 0.00 0.00 0.00 3.13
9684 19772 1.257743 CTCTCCCTCACACTTTCCGA 58.742 55.000 0.00 0.00 0.00 4.55
9685 19773 1.827969 CTCTCCCTCACACTTTCCGAT 59.172 52.381 0.00 0.00 0.00 4.18
9686 19774 1.825474 TCTCCCTCACACTTTCCGATC 59.175 52.381 0.00 0.00 0.00 3.69
9687 19775 0.902531 TCCCTCACACTTTCCGATCC 59.097 55.000 0.00 0.00 0.00 3.36
9688 19776 0.107654 CCCTCACACTTTCCGATCCC 60.108 60.000 0.00 0.00 0.00 3.85
9689 19777 0.613260 CCTCACACTTTCCGATCCCA 59.387 55.000 0.00 0.00 0.00 4.37
9690 19778 1.210478 CCTCACACTTTCCGATCCCAT 59.790 52.381 0.00 0.00 0.00 4.00
9691 19779 2.555199 CTCACACTTTCCGATCCCATC 58.445 52.381 0.00 0.00 0.00 3.51
9692 19780 1.209504 TCACACTTTCCGATCCCATCC 59.790 52.381 0.00 0.00 0.00 3.51
9693 19781 1.065491 CACACTTTCCGATCCCATCCA 60.065 52.381 0.00 0.00 0.00 3.41
9694 19782 1.065418 ACACTTTCCGATCCCATCCAC 60.065 52.381 0.00 0.00 0.00 4.02
9695 19783 0.546598 ACTTTCCGATCCCATCCACC 59.453 55.000 0.00 0.00 0.00 4.61
9696 19784 0.546122 CTTTCCGATCCCATCCACCA 59.454 55.000 0.00 0.00 0.00 4.17
9697 19785 1.143684 CTTTCCGATCCCATCCACCAT 59.856 52.381 0.00 0.00 0.00 3.55
9698 19786 0.473755 TTCCGATCCCATCCACCATG 59.526 55.000 0.00 0.00 0.00 3.66
9699 19787 0.399806 TCCGATCCCATCCACCATGA 60.400 55.000 0.00 0.00 33.80 3.07
9700 19788 0.694771 CCGATCCCATCCACCATGAT 59.305 55.000 0.00 0.00 33.80 2.45
9701 19789 1.612462 CCGATCCCATCCACCATGATG 60.612 57.143 0.00 0.00 41.47 3.07
9702 19790 1.348696 CGATCCCATCCACCATGATGA 59.651 52.381 0.00 0.00 43.94 2.92
9703 19791 2.614734 CGATCCCATCCACCATGATGAG 60.615 54.545 0.00 0.00 43.94 2.90
9704 19792 0.475475 TCCCATCCACCATGATGAGC 59.525 55.000 0.00 0.00 43.94 4.26
9705 19793 0.184211 CCCATCCACCATGATGAGCA 59.816 55.000 0.00 0.00 43.94 4.26
9706 19794 1.605753 CCATCCACCATGATGAGCAG 58.394 55.000 0.00 0.00 43.94 4.24
9707 19795 0.952280 CATCCACCATGATGAGCAGC 59.048 55.000 0.00 0.00 43.94 5.25
9708 19796 0.844660 ATCCACCATGATGAGCAGCT 59.155 50.000 0.00 0.00 0.00 4.24
9709 19797 0.179702 TCCACCATGATGAGCAGCTC 59.820 55.000 16.21 16.21 0.00 4.09
9715 19803 2.588314 GATGAGCAGCTCCGGCAG 60.588 66.667 20.16 0.00 41.70 4.85
9739 19827 3.197614 CGGCTCGGAGCTCAACTA 58.802 61.111 27.47 0.00 41.99 2.24
9748 19836 1.682394 GGAGCTCAACTACGAGGAGGA 60.682 57.143 17.19 0.00 33.36 3.71
9749 19837 1.673920 GAGCTCAACTACGAGGAGGAG 59.326 57.143 9.40 0.00 36.66 3.69
9751 19839 2.092103 AGCTCAACTACGAGGAGGAGAT 60.092 50.000 0.00 0.00 33.99 2.75
9752 19840 2.034053 GCTCAACTACGAGGAGGAGATG 59.966 54.545 0.00 0.00 35.12 2.90
9753 19841 2.621055 CTCAACTACGAGGAGGAGATGG 59.379 54.545 0.00 0.00 34.62 3.51
9754 19842 1.067821 CAACTACGAGGAGGAGATGGC 59.932 57.143 0.00 0.00 33.99 4.40
9756 19844 1.152525 TACGAGGAGGAGATGGCCC 60.153 63.158 0.00 0.00 0.00 5.80
9763 19851 3.564218 GGAGATGGCCCTCCGCAT 61.564 66.667 11.81 0.00 42.80 4.73
9764 19852 2.512896 GAGATGGCCCTCCGCATT 59.487 61.111 0.00 0.00 40.31 3.56
9765 19853 1.895707 GAGATGGCCCTCCGCATTG 60.896 63.158 0.00 0.00 40.31 2.82
9766 19854 2.124151 GATGGCCCTCCGCATTGT 60.124 61.111 0.00 0.00 40.31 2.71
9767 19855 2.440796 ATGGCCCTCCGCATTGTG 60.441 61.111 0.00 0.00 40.31 3.33
9770 19858 3.818787 GCCCTCCGCATTGTGCTG 61.819 66.667 0.10 0.00 42.25 4.41
9771 19859 3.136123 CCCTCCGCATTGTGCTGG 61.136 66.667 0.10 3.84 42.25 4.85
9774 19862 2.749682 TCCGCATTGTGCTGGAGT 59.250 55.556 10.08 0.00 42.25 3.85
9775 19863 1.672030 TCCGCATTGTGCTGGAGTG 60.672 57.895 10.08 0.00 42.25 3.51
9776 19864 2.693762 CCGCATTGTGCTGGAGTGG 61.694 63.158 6.89 0.00 42.25 4.00
9777 19865 1.968017 CGCATTGTGCTGGAGTGGT 60.968 57.895 0.10 0.00 42.25 4.16
9778 19866 1.878775 GCATTGTGCTGGAGTGGTC 59.121 57.895 0.00 0.00 40.96 4.02
9787 19875 3.900888 GGAGTGGTCCAAGGTGGA 58.099 61.111 0.00 0.00 45.98 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.147732 TGGACTTATCTGAGCTAATATTCTTGA 57.852 33.333 0.00 0.00 0.00 3.02
11 12 9.421806 CTGGACTTATCTGAGCTAATATTCTTG 57.578 37.037 0.00 0.00 0.00 3.02
12 13 9.373450 TCTGGACTTATCTGAGCTAATATTCTT 57.627 33.333 0.00 0.00 0.00 2.52
13 14 8.948401 TCTGGACTTATCTGAGCTAATATTCT 57.052 34.615 0.00 0.00 0.00 2.40
14 15 9.585099 CATCTGGACTTATCTGAGCTAATATTC 57.415 37.037 0.00 0.00 0.00 1.75
15 16 9.099071 ACATCTGGACTTATCTGAGCTAATATT 57.901 33.333 0.00 0.00 0.00 1.28
16 17 8.663209 ACATCTGGACTTATCTGAGCTAATAT 57.337 34.615 0.00 0.00 0.00 1.28
17 18 9.760926 ATACATCTGGACTTATCTGAGCTAATA 57.239 33.333 0.00 0.00 0.00 0.98
18 19 6.992664 ACATCTGGACTTATCTGAGCTAAT 57.007 37.500 0.00 0.00 0.00 1.73
19 20 7.524532 GCATACATCTGGACTTATCTGAGCTAA 60.525 40.741 0.00 0.00 0.00 3.09
20 21 6.071672 GCATACATCTGGACTTATCTGAGCTA 60.072 42.308 0.00 0.00 0.00 3.32
21 22 5.279406 GCATACATCTGGACTTATCTGAGCT 60.279 44.000 0.00 0.00 0.00 4.09
22 23 4.928615 GCATACATCTGGACTTATCTGAGC 59.071 45.833 0.00 0.00 0.00 4.26
23 24 5.011431 TGGCATACATCTGGACTTATCTGAG 59.989 44.000 0.00 0.00 0.00 3.35
24 25 4.901250 TGGCATACATCTGGACTTATCTGA 59.099 41.667 0.00 0.00 0.00 3.27
25 26 5.219343 TGGCATACATCTGGACTTATCTG 57.781 43.478 0.00 0.00 0.00 2.90
26 27 5.367937 AGTTGGCATACATCTGGACTTATCT 59.632 40.000 0.00 0.00 0.00 1.98
27 28 5.615289 AGTTGGCATACATCTGGACTTATC 58.385 41.667 0.00 0.00 0.00 1.75
28 29 5.636903 AGTTGGCATACATCTGGACTTAT 57.363 39.130 0.00 0.00 0.00 1.73
29 30 6.553953 TTAGTTGGCATACATCTGGACTTA 57.446 37.500 0.00 0.00 31.74 2.24
30 31 5.435686 TTAGTTGGCATACATCTGGACTT 57.564 39.130 0.00 0.00 31.74 3.01
31 32 5.435686 TTTAGTTGGCATACATCTGGACT 57.564 39.130 0.00 0.00 31.74 3.85
32 33 6.404734 CCTTTTTAGTTGGCATACATCTGGAC 60.405 42.308 0.00 0.00 31.74 4.02
33 34 5.652014 CCTTTTTAGTTGGCATACATCTGGA 59.348 40.000 0.00 0.00 31.74 3.86
34 35 5.679638 GCCTTTTTAGTTGGCATACATCTGG 60.680 44.000 0.00 0.00 45.46 3.86
35 36 5.343249 GCCTTTTTAGTTGGCATACATCTG 58.657 41.667 0.00 0.00 45.46 2.90
36 37 5.582689 GCCTTTTTAGTTGGCATACATCT 57.417 39.130 0.00 0.00 45.46 2.90
44 45 5.644977 ATGTAAGAGCCTTTTTAGTTGGC 57.355 39.130 0.00 0.00 46.42 4.52
45 46 8.281212 ACATATGTAAGAGCCTTTTTAGTTGG 57.719 34.615 6.56 0.00 0.00 3.77
48 49 9.515226 TGAAACATATGTAAGAGCCTTTTTAGT 57.485 29.630 9.21 0.00 0.00 2.24
51 52 9.860898 GATTGAAACATATGTAAGAGCCTTTTT 57.139 29.630 9.21 0.00 0.00 1.94
52 53 9.247861 AGATTGAAACATATGTAAGAGCCTTTT 57.752 29.630 9.21 0.00 0.00 2.27
53 54 8.680903 CAGATTGAAACATATGTAAGAGCCTTT 58.319 33.333 9.21 0.00 0.00 3.11
54 55 7.831193 ACAGATTGAAACATATGTAAGAGCCTT 59.169 33.333 9.21 0.00 0.00 4.35
55 56 7.341805 ACAGATTGAAACATATGTAAGAGCCT 58.658 34.615 9.21 0.69 0.00 4.58
56 57 7.559590 ACAGATTGAAACATATGTAAGAGCC 57.440 36.000 9.21 0.00 0.00 4.70
79 80 7.031226 AGTGTGCATTGAAATATGTGGATAC 57.969 36.000 0.00 0.00 0.00 2.24
80 81 6.262944 GGAGTGTGCATTGAAATATGTGGATA 59.737 38.462 0.00 0.00 0.00 2.59
81 82 5.068198 GGAGTGTGCATTGAAATATGTGGAT 59.932 40.000 0.00 0.00 0.00 3.41
82 83 4.398988 GGAGTGTGCATTGAAATATGTGGA 59.601 41.667 0.00 0.00 0.00 4.02
83 84 4.400251 AGGAGTGTGCATTGAAATATGTGG 59.600 41.667 0.00 0.00 0.00 4.17
84 85 5.449588 GGAGGAGTGTGCATTGAAATATGTG 60.450 44.000 0.00 0.00 0.00 3.21
85 86 4.641989 GGAGGAGTGTGCATTGAAATATGT 59.358 41.667 0.00 0.00 0.00 2.29
86 87 4.641541 TGGAGGAGTGTGCATTGAAATATG 59.358 41.667 0.00 0.00 0.00 1.78
87 88 4.858850 TGGAGGAGTGTGCATTGAAATAT 58.141 39.130 0.00 0.00 0.00 1.28
88 89 4.299586 TGGAGGAGTGTGCATTGAAATA 57.700 40.909 0.00 0.00 0.00 1.40
89 90 3.159213 TGGAGGAGTGTGCATTGAAAT 57.841 42.857 0.00 0.00 0.00 2.17
90 91 2.655090 TGGAGGAGTGTGCATTGAAA 57.345 45.000 0.00 0.00 0.00 2.69
91 92 2.655090 TTGGAGGAGTGTGCATTGAA 57.345 45.000 0.00 0.00 0.00 2.69
92 93 2.885135 ATTGGAGGAGTGTGCATTGA 57.115 45.000 0.00 0.00 0.00 2.57
93 94 2.684881 GGTATTGGAGGAGTGTGCATTG 59.315 50.000 0.00 0.00 0.00 2.82
94 95 2.578021 AGGTATTGGAGGAGTGTGCATT 59.422 45.455 0.00 0.00 0.00 3.56
95 96 2.092753 CAGGTATTGGAGGAGTGTGCAT 60.093 50.000 0.00 0.00 0.00 3.96
96 97 1.278985 CAGGTATTGGAGGAGTGTGCA 59.721 52.381 0.00 0.00 0.00 4.57
97 98 2.029838 CAGGTATTGGAGGAGTGTGC 57.970 55.000 0.00 0.00 0.00 4.57
118 119 2.174349 GCAAAGACCGAGCGCAAG 59.826 61.111 11.47 1.89 43.44 4.01
119 120 3.711842 CGCAAAGACCGAGCGCAA 61.712 61.111 11.47 0.00 45.14 4.85
123 124 3.127533 ATGGCGCAAAGACCGAGC 61.128 61.111 10.83 0.00 0.00 5.03
124 125 2.753966 CCATGGCGCAAAGACCGAG 61.754 63.158 10.83 0.00 0.00 4.63
125 126 2.745884 CCATGGCGCAAAGACCGA 60.746 61.111 10.83 0.00 0.00 4.69
126 127 3.814268 CCCATGGCGCAAAGACCG 61.814 66.667 10.83 0.00 0.00 4.79
127 128 4.133796 GCCCATGGCGCAAAGACC 62.134 66.667 10.83 0.00 39.62 3.85
139 140 4.424711 ATGACCCGTTGCGCCCAT 62.425 61.111 4.18 0.00 0.00 4.00
141 142 3.379865 TAGATGACCCGTTGCGCCC 62.380 63.158 4.18 0.00 0.00 6.13
142 143 1.883084 CTAGATGACCCGTTGCGCC 60.883 63.158 4.18 0.00 0.00 6.53
143 144 0.101759 TACTAGATGACCCGTTGCGC 59.898 55.000 0.00 0.00 0.00 6.09
144 145 2.460918 CTTACTAGATGACCCGTTGCG 58.539 52.381 0.00 0.00 0.00 4.85
145 146 2.822764 CCTTACTAGATGACCCGTTGC 58.177 52.381 0.00 0.00 0.00 4.17
146 147 2.431057 AGCCTTACTAGATGACCCGTTG 59.569 50.000 0.00 0.00 0.00 4.10
147 148 2.748388 AGCCTTACTAGATGACCCGTT 58.252 47.619 0.00 0.00 0.00 4.44
148 149 2.456073 AGCCTTACTAGATGACCCGT 57.544 50.000 0.00 0.00 0.00 5.28
149 150 4.931661 TTTAGCCTTACTAGATGACCCG 57.068 45.455 0.00 0.00 30.79 5.28
150 151 6.236558 ACTTTTAGCCTTACTAGATGACCC 57.763 41.667 0.00 0.00 30.79 4.46
151 152 8.422566 ACATACTTTTAGCCTTACTAGATGACC 58.577 37.037 0.00 0.00 30.79 4.02
187 188 5.747951 ATTAGCTGAAGCATTAAGACTGC 57.252 39.130 4.90 0.00 45.16 4.40
271 276 2.468831 CGGCTTCTTCTCTCATACTGC 58.531 52.381 0.00 0.00 0.00 4.40
272 277 2.690497 TCCGGCTTCTTCTCTCATACTG 59.310 50.000 0.00 0.00 0.00 2.74
273 278 3.019799 TCCGGCTTCTTCTCTCATACT 57.980 47.619 0.00 0.00 0.00 2.12
274 279 4.202161 TGAATCCGGCTTCTTCTCTCATAC 60.202 45.833 18.27 0.00 0.00 2.39
275 280 3.960755 TGAATCCGGCTTCTTCTCTCATA 59.039 43.478 18.27 0.00 0.00 2.15
297 303 1.059098 TCATCAGACTGGGTTGTGCT 58.941 50.000 1.81 0.00 0.00 4.40
298 304 1.808945 CTTCATCAGACTGGGTTGTGC 59.191 52.381 1.81 0.00 0.00 4.57
326 332 7.040132 ACCATTTCATCAGTTTCTTCTTCTTCC 60.040 37.037 0.00 0.00 0.00 3.46
329 335 6.774656 ACACCATTTCATCAGTTTCTTCTTCT 59.225 34.615 0.00 0.00 0.00 2.85
359 365 3.756963 ACTATTTTCGGGCAACTTCTTCC 59.243 43.478 0.00 0.00 0.00 3.46
372 378 4.840401 TTCAGCATCGACACTATTTTCG 57.160 40.909 0.00 0.00 36.55 3.46
497 504 1.883275 TCGAAACAAATGCGGAACCAT 59.117 42.857 0.00 0.00 0.00 3.55
501 508 2.097629 TGTTGTCGAAACAAATGCGGAA 59.902 40.909 9.68 0.00 46.56 4.30
503 510 2.043411 CTGTTGTCGAAACAAATGCGG 58.957 47.619 12.17 0.38 46.56 5.69
504 511 2.043411 CCTGTTGTCGAAACAAATGCG 58.957 47.619 12.17 0.00 46.56 4.73
506 513 7.530010 AGATAATCCTGTTGTCGAAACAAATG 58.470 34.615 12.17 6.41 46.56 2.32
508 515 6.708502 TGAGATAATCCTGTTGTCGAAACAAA 59.291 34.615 12.17 6.31 46.56 2.83
558 571 3.506743 TTGGGTTGCCAGGCCAGA 61.507 61.111 9.64 0.00 0.00 3.86
567 580 1.523758 AGATCAACGACTTGGGTTGC 58.476 50.000 0.00 0.00 43.37 4.17
571 584 5.701290 AGTTTCTTTAGATCAACGACTTGGG 59.299 40.000 0.00 0.00 0.00 4.12
572 585 6.423905 TCAGTTTCTTTAGATCAACGACTTGG 59.576 38.462 0.00 0.00 0.00 3.61
575 588 7.872993 TCATTCAGTTTCTTTAGATCAACGACT 59.127 33.333 0.00 0.00 0.00 4.18
576 589 8.018677 TCATTCAGTTTCTTTAGATCAACGAC 57.981 34.615 0.00 0.00 0.00 4.34
577 590 8.601845 TTCATTCAGTTTCTTTAGATCAACGA 57.398 30.769 0.00 0.00 0.00 3.85
578 591 8.499162 ACTTCATTCAGTTTCTTTAGATCAACG 58.501 33.333 0.00 0.00 0.00 4.10
579 592 9.604626 CACTTCATTCAGTTTCTTTAGATCAAC 57.395 33.333 0.00 0.00 0.00 3.18
580 593 8.786898 CCACTTCATTCAGTTTCTTTAGATCAA 58.213 33.333 0.00 0.00 0.00 2.57
582 595 8.553459 TCCACTTCATTCAGTTTCTTTAGATC 57.447 34.615 0.00 0.00 0.00 2.75
586 599 9.567776 TTACATCCACTTCATTCAGTTTCTTTA 57.432 29.630 0.00 0.00 0.00 1.85
605 618 1.470098 CAGCAGTGCAAGGTTACATCC 59.530 52.381 19.20 0.00 0.00 3.51
611 624 1.873903 CGTAGTCAGCAGTGCAAGGTT 60.874 52.381 19.20 1.11 0.00 3.50
616 629 2.733945 TGCGTAGTCAGCAGTGCA 59.266 55.556 19.20 0.00 40.01 4.57
675 688 3.073650 AGAGCCAAGGAACAGACTGAATT 59.926 43.478 10.08 0.00 0.00 2.17
676 689 2.641815 AGAGCCAAGGAACAGACTGAAT 59.358 45.455 10.08 0.00 0.00 2.57
677 690 2.050144 AGAGCCAAGGAACAGACTGAA 58.950 47.619 10.08 0.00 0.00 3.02
678 691 1.345741 CAGAGCCAAGGAACAGACTGA 59.654 52.381 10.08 0.00 0.00 3.41
679 692 1.345741 TCAGAGCCAAGGAACAGACTG 59.654 52.381 0.00 0.00 0.00 3.51
680 693 1.346068 GTCAGAGCCAAGGAACAGACT 59.654 52.381 0.00 0.00 0.00 3.24
681 694 1.609320 GGTCAGAGCCAAGGAACAGAC 60.609 57.143 0.00 0.00 0.00 3.51
682 695 0.687354 GGTCAGAGCCAAGGAACAGA 59.313 55.000 0.00 0.00 0.00 3.41
683 696 0.397941 TGGTCAGAGCCAAGGAACAG 59.602 55.000 0.00 0.00 35.25 3.16
684 697 0.108585 GTGGTCAGAGCCAAGGAACA 59.891 55.000 0.00 0.00 40.68 3.18
685 698 0.108585 TGTGGTCAGAGCCAAGGAAC 59.891 55.000 0.00 0.00 40.68 3.62
686 699 0.108585 GTGTGGTCAGAGCCAAGGAA 59.891 55.000 0.00 0.00 40.68 3.36
687 700 1.754745 GTGTGGTCAGAGCCAAGGA 59.245 57.895 0.00 0.00 40.68 3.36
688 701 1.302832 GGTGTGGTCAGAGCCAAGG 60.303 63.158 0.00 0.00 40.68 3.61
689 702 0.179020 TTGGTGTGGTCAGAGCCAAG 60.179 55.000 0.00 0.00 40.68 3.61
690 703 0.465460 GTTGGTGTGGTCAGAGCCAA 60.465 55.000 0.00 0.00 40.68 4.52
691 704 1.148273 GTTGGTGTGGTCAGAGCCA 59.852 57.895 0.00 0.00 35.93 4.75
692 705 1.600916 GGTTGGTGTGGTCAGAGCC 60.601 63.158 0.00 0.00 0.00 4.70
694 707 1.073199 GGGGTTGGTGTGGTCAGAG 59.927 63.158 0.00 0.00 0.00 3.35
700 713 0.407918 ATTACCTGGGGTTGGTGTGG 59.592 55.000 0.00 0.00 38.42 4.17
703 716 2.899303 AAGATTACCTGGGGTTGGTG 57.101 50.000 0.00 0.00 38.42 4.17
712 725 3.056465 GGGCTCCGAGATAAGATTACCTG 60.056 52.174 0.00 0.00 0.00 4.00
821 1090 1.294138 CGGGCGTCCAGGTTTTCTA 59.706 57.895 6.96 0.00 0.00 2.10
912 1188 7.573968 ACGTAGTCCCTATAAATAAACTCGT 57.426 36.000 0.00 0.00 29.74 4.18
935 1212 1.188219 TGTCTGCCTGGAGAGTGGAC 61.188 60.000 0.00 0.00 0.00 4.02
965 1242 1.634753 CTGCGTGCGTGATGATCAG 59.365 57.895 0.09 0.00 0.00 2.90
976 1256 4.374702 CTGTTCGTGCCTGCGTGC 62.375 66.667 0.00 0.00 0.00 5.34
1241 2324 1.355210 CAACCAACCTGCGTGTCAC 59.645 57.895 0.00 0.00 0.00 3.67
1243 2326 3.030652 CCAACCAACCTGCGTGTC 58.969 61.111 0.00 0.00 0.00 3.67
1245 2328 3.977244 GGCCAACCAACCTGCGTG 61.977 66.667 0.00 0.00 35.26 5.34
1247 2330 2.912025 AAGGCCAACCAACCTGCG 60.912 61.111 5.01 0.00 39.06 5.18
1248 2331 2.736531 CAAGGCCAACCAACCTGC 59.263 61.111 5.01 0.00 39.06 4.85
1251 2334 1.004679 CATGCAAGGCCAACCAACC 60.005 57.895 5.01 0.00 39.06 3.77
1253 2336 2.742403 GCATGCAAGGCCAACCAA 59.258 55.556 14.21 0.00 37.93 3.67
1304 2423 3.379445 TCCGCGTCCAGGAAGTCC 61.379 66.667 4.92 0.00 34.33 3.85
2977 5360 1.356124 AGACTGTCTTGCATCCCTGT 58.644 50.000 4.06 0.00 0.00 4.00
3005 5388 4.679662 CAAGCAGCAAGAATTAATCCCAG 58.320 43.478 0.00 0.00 0.00 4.45
5941 10640 0.320374 ACGAATTGCCGGAGAAGACA 59.680 50.000 5.05 0.00 0.00 3.41
6469 11171 3.766591 AGGCAGCTATACTTCTATCGCAT 59.233 43.478 0.00 0.00 0.00 4.73
6832 11537 2.926200 CACGGATTGCACACAACAAAAA 59.074 40.909 0.00 0.00 38.99 1.94
6833 11538 2.164422 TCACGGATTGCACACAACAAAA 59.836 40.909 0.00 0.00 38.99 2.44
6940 11680 0.108186 GTGATGATGGAGGCGTGTGA 60.108 55.000 0.00 0.00 0.00 3.58
7044 11784 6.267070 TGGTGAAAACGGATTTTTAGTTCAC 58.733 36.000 0.00 0.00 38.17 3.18
7045 11785 6.452494 TGGTGAAAACGGATTTTTAGTTCA 57.548 33.333 0.00 0.00 38.17 3.18
7104 11845 4.749976 TCGTCGAAACATATCAACATGGA 58.250 39.130 0.00 0.00 0.00 3.41
7899 12697 7.109501 TGTCTAATTTCCTACTGCTTGCAATA 58.890 34.615 0.00 0.00 0.00 1.90
8479 15986 2.632377 CACATCTACCTTGCCGTCAAT 58.368 47.619 0.00 0.00 0.00 2.57
8523 16030 7.148069 GGACATGGATTTTTCCTAACCAGTTAG 60.148 40.741 10.08 10.08 41.56 2.34
8551 16058 2.762234 CCTCGAGAAGGGTCGACCG 61.762 68.421 27.68 15.24 43.91 4.79
8552 16059 3.198582 CCTCGAGAAGGGTCGACC 58.801 66.667 27.04 27.04 43.91 4.79
8580 16087 2.202756 GTCTCGATCACCGTGCCC 60.203 66.667 0.00 0.00 39.75 5.36
8690 16625 3.155167 CCTCGTACTGGGCCTCCC 61.155 72.222 4.53 0.00 45.71 4.30
8797 16732 6.818142 GGGAAGCAAGCACACAAAAATATATT 59.182 34.615 0.00 0.00 0.00 1.28
8799 16734 5.244851 TGGGAAGCAAGCACACAAAAATATA 59.755 36.000 0.00 0.00 0.00 0.86
8825 16787 2.110578 GCAGCTTTATTGGGTTGGGAT 58.889 47.619 0.00 0.00 0.00 3.85
8826 16788 1.077005 AGCAGCTTTATTGGGTTGGGA 59.923 47.619 0.00 0.00 0.00 4.37
8827 16789 1.478105 GAGCAGCTTTATTGGGTTGGG 59.522 52.381 0.00 0.00 0.00 4.12
8828 16790 1.478105 GGAGCAGCTTTATTGGGTTGG 59.522 52.381 0.00 0.00 0.00 3.77
8829 16791 2.165030 CTGGAGCAGCTTTATTGGGTTG 59.835 50.000 0.00 0.00 0.00 3.77
8830 16792 2.450476 CTGGAGCAGCTTTATTGGGTT 58.550 47.619 0.00 0.00 0.00 4.11
8831 16793 2.134789 CTGGAGCAGCTTTATTGGGT 57.865 50.000 0.00 0.00 0.00 4.51
8857 16824 3.442625 TCTCGTTTCACCATCGACATACT 59.557 43.478 0.00 0.00 0.00 2.12
8873 16840 0.320247 CCTTGCTCACTGCTCTCGTT 60.320 55.000 0.00 0.00 43.37 3.85
8874 16841 1.181741 TCCTTGCTCACTGCTCTCGT 61.182 55.000 0.00 0.00 43.37 4.18
8901 17918 4.009370 ACCTCTTAACTTCAAGTCCAGC 57.991 45.455 0.00 0.00 0.00 4.85
9088 19176 0.324285 GATATGCAGAGGCCAGGAGG 59.676 60.000 5.01 0.00 40.13 4.30
9107 19195 7.119407 TGTGTGCCAATTTTAATCAAATCATGG 59.881 33.333 0.00 0.00 36.42 3.66
9157 19245 8.059798 ACGTTGTTGTGTACTAGGAGTATTAT 57.940 34.615 0.00 0.00 32.65 1.28
9158 19246 7.452880 ACGTTGTTGTGTACTAGGAGTATTA 57.547 36.000 0.00 0.00 32.65 0.98
9160 19248 5.972107 ACGTTGTTGTGTACTAGGAGTAT 57.028 39.130 0.00 0.00 32.65 2.12
9161 19249 5.107104 CGTACGTTGTTGTGTACTAGGAGTA 60.107 44.000 7.22 0.00 38.99 2.59
9162 19250 4.319766 CGTACGTTGTTGTGTACTAGGAGT 60.320 45.833 7.22 0.00 38.99 3.85
9165 19253 3.236816 CCGTACGTTGTTGTGTACTAGG 58.763 50.000 15.21 0.00 38.99 3.02
9166 19254 2.658325 GCCGTACGTTGTTGTGTACTAG 59.342 50.000 15.21 0.00 38.99 2.57
9167 19255 2.033927 TGCCGTACGTTGTTGTGTACTA 59.966 45.455 15.21 0.00 38.99 1.82
9169 19257 1.190763 CTGCCGTACGTTGTTGTGTAC 59.809 52.381 15.21 0.00 38.03 2.90
9170 19258 1.066757 TCTGCCGTACGTTGTTGTGTA 59.933 47.619 15.21 0.00 0.00 2.90
9172 19260 0.931702 TTCTGCCGTACGTTGTTGTG 59.068 50.000 15.21 0.00 0.00 3.33
9173 19261 0.932399 GTTCTGCCGTACGTTGTTGT 59.068 50.000 15.21 0.00 0.00 3.32
9174 19262 0.233848 GGTTCTGCCGTACGTTGTTG 59.766 55.000 15.21 0.00 0.00 3.33
9175 19263 0.179078 TGGTTCTGCCGTACGTTGTT 60.179 50.000 15.21 0.00 41.21 2.83
9176 19264 0.179078 TTGGTTCTGCCGTACGTTGT 60.179 50.000 15.21 0.00 41.21 3.32
9177 19265 0.511221 CTTGGTTCTGCCGTACGTTG 59.489 55.000 15.21 0.29 41.21 4.10
9178 19266 0.390124 TCTTGGTTCTGCCGTACGTT 59.610 50.000 15.21 0.00 41.21 3.99
9179 19267 0.319297 GTCTTGGTTCTGCCGTACGT 60.319 55.000 15.21 0.00 41.21 3.57
9180 19268 0.319211 TGTCTTGGTTCTGCCGTACG 60.319 55.000 8.69 8.69 41.21 3.67
9181 19269 1.798813 CTTGTCTTGGTTCTGCCGTAC 59.201 52.381 0.00 0.00 41.21 3.67
9183 19271 0.535102 CCTTGTCTTGGTTCTGCCGT 60.535 55.000 0.00 0.00 41.21 5.68
9184 19272 1.856265 GCCTTGTCTTGGTTCTGCCG 61.856 60.000 0.00 0.00 41.21 5.69
9186 19274 0.312102 GTGCCTTGTCTTGGTTCTGC 59.688 55.000 0.00 0.00 0.00 4.26
9187 19275 1.679139 TGTGCCTTGTCTTGGTTCTG 58.321 50.000 0.00 0.00 0.00 3.02
9188 19276 2.024414 GTTGTGCCTTGTCTTGGTTCT 58.976 47.619 0.00 0.00 0.00 3.01
9189 19277 1.067060 GGTTGTGCCTTGTCTTGGTTC 59.933 52.381 0.00 0.00 0.00 3.62
9191 19279 2.807247 GGTTGTGCCTTGTCTTGGT 58.193 52.632 0.00 0.00 0.00 3.67
9201 19289 3.623510 GCTGTAGAGATTTAGGTTGTGCC 59.376 47.826 0.00 0.00 37.58 5.01
9202 19290 4.508662 AGCTGTAGAGATTTAGGTTGTGC 58.491 43.478 0.00 0.00 0.00 4.57
9204 19292 7.483580 ACTTAGCTGTAGAGATTTAGGTTGT 57.516 36.000 0.00 0.00 0.00 3.32
9215 19303 9.738832 GGAAGAAAGTATAACTTAGCTGTAGAG 57.261 37.037 0.00 0.00 37.47 2.43
9226 19314 8.903820 GGCATTGTTATGGAAGAAAGTATAACT 58.096 33.333 0.00 0.00 37.08 2.24
9227 19315 8.903820 AGGCATTGTTATGGAAGAAAGTATAAC 58.096 33.333 0.00 0.00 36.83 1.89
9228 19316 9.474313 AAGGCATTGTTATGGAAGAAAGTATAA 57.526 29.630 0.00 0.00 32.15 0.98
9229 19317 9.120538 GAAGGCATTGTTATGGAAGAAAGTATA 57.879 33.333 0.00 0.00 32.15 1.47
9231 19319 6.945435 TGAAGGCATTGTTATGGAAGAAAGTA 59.055 34.615 0.00 0.00 32.15 2.24
9232 19320 5.774690 TGAAGGCATTGTTATGGAAGAAAGT 59.225 36.000 0.00 0.00 32.15 2.66
9234 19322 6.493115 TCTTGAAGGCATTGTTATGGAAGAAA 59.507 34.615 0.00 0.00 32.15 2.52
9235 19323 6.009589 TCTTGAAGGCATTGTTATGGAAGAA 58.990 36.000 0.00 0.00 32.15 2.52
9237 19325 5.902613 TCTTGAAGGCATTGTTATGGAAG 57.097 39.130 0.00 0.00 32.15 3.46
9238 19326 6.009589 TCTTCTTGAAGGCATTGTTATGGAA 58.990 36.000 10.08 0.00 32.15 3.53
9239 19327 5.569355 TCTTCTTGAAGGCATTGTTATGGA 58.431 37.500 10.08 0.00 32.15 3.41
9241 19329 6.596888 TCTCTCTTCTTGAAGGCATTGTTATG 59.403 38.462 10.08 0.00 34.76 1.90
9242 19330 6.715280 TCTCTCTTCTTGAAGGCATTGTTAT 58.285 36.000 10.08 0.00 0.00 1.89
9244 19332 4.978099 TCTCTCTTCTTGAAGGCATTGTT 58.022 39.130 10.08 0.00 0.00 2.83
9247 19335 4.759183 GTGTTCTCTCTTCTTGAAGGCATT 59.241 41.667 10.08 0.00 0.00 3.56
9249 19337 3.134623 TGTGTTCTCTCTTCTTGAAGGCA 59.865 43.478 10.08 0.00 0.00 4.75
9251 19339 4.509600 GTGTGTGTTCTCTCTTCTTGAAGG 59.490 45.833 10.08 2.46 0.00 3.46
9252 19340 4.208047 CGTGTGTGTTCTCTCTTCTTGAAG 59.792 45.833 4.13 4.13 0.00 3.02
9253 19341 4.112634 CGTGTGTGTTCTCTCTTCTTGAA 58.887 43.478 0.00 0.00 0.00 2.69
9254 19342 3.130516 ACGTGTGTGTTCTCTCTTCTTGA 59.869 43.478 0.00 0.00 0.00 3.02
9256 19344 3.448686 CACGTGTGTGTTCTCTCTTCTT 58.551 45.455 7.58 0.00 41.34 2.52
9275 19363 3.236618 GAGTTGGCGACGTTGGCAC 62.237 63.158 29.96 23.02 44.88 5.01
9276 19364 2.089887 TAGAGTTGGCGACGTTGGCA 62.090 55.000 26.87 26.87 43.36 4.92
9277 19365 1.352156 CTAGAGTTGGCGACGTTGGC 61.352 60.000 21.93 21.93 0.00 4.52
9280 19368 0.666577 GTGCTAGAGTTGGCGACGTT 60.667 55.000 0.00 0.00 32.70 3.99
9281 19369 1.080705 GTGCTAGAGTTGGCGACGT 60.081 57.895 0.00 0.00 32.70 4.34
9282 19370 2.152699 CGTGCTAGAGTTGGCGACG 61.153 63.158 0.00 0.00 32.70 5.12
9283 19371 1.080705 ACGTGCTAGAGTTGGCGAC 60.081 57.895 0.00 0.00 32.70 5.19
9284 19372 1.080772 CACGTGCTAGAGTTGGCGA 60.081 57.895 0.82 0.00 32.70 5.54
9285 19373 2.094659 CCACGTGCTAGAGTTGGCG 61.095 63.158 10.91 0.00 32.70 5.69
9286 19374 2.391389 GCCACGTGCTAGAGTTGGC 61.391 63.158 10.91 0.25 36.87 4.52
9289 19377 2.261671 CCGCCACGTGCTAGAGTT 59.738 61.111 10.91 0.00 38.05 3.01
9290 19378 4.436998 GCCGCCACGTGCTAGAGT 62.437 66.667 10.91 0.00 38.05 3.24
9291 19379 2.669808 CTAGCCGCCACGTGCTAGAG 62.670 65.000 21.86 6.88 46.27 2.43
9292 19380 2.752640 TAGCCGCCACGTGCTAGA 60.753 61.111 10.91 0.00 35.69 2.43
9295 19383 3.234630 TTTCTAGCCGCCACGTGCT 62.235 57.895 10.91 6.70 37.25 4.40
9296 19384 2.740826 TTTCTAGCCGCCACGTGC 60.741 61.111 10.91 4.89 0.00 5.34
9297 19385 1.225376 TTGTTTCTAGCCGCCACGTG 61.225 55.000 9.08 9.08 0.00 4.49
9298 19386 0.533308 TTTGTTTCTAGCCGCCACGT 60.533 50.000 0.00 0.00 0.00 4.49
9299 19387 0.589223 TTTTGTTTCTAGCCGCCACG 59.411 50.000 0.00 0.00 0.00 4.94
9300 19388 2.785713 TTTTTGTTTCTAGCCGCCAC 57.214 45.000 0.00 0.00 0.00 5.01
9302 19390 6.035650 GGAAAATATTTTTGTTTCTAGCCGCC 59.964 38.462 14.45 3.33 32.89 6.13
9303 19391 6.588373 TGGAAAATATTTTTGTTTCTAGCCGC 59.412 34.615 14.45 0.00 32.89 6.53
9304 19392 8.702163 ATGGAAAATATTTTTGTTTCTAGCCG 57.298 30.769 14.45 0.00 32.89 5.52
9306 19394 9.353999 ACGATGGAAAATATTTTTGTTTCTAGC 57.646 29.630 14.45 2.25 32.89 3.42
9331 19419 9.775921 ATGTGGACATGATTTGTTGAACCCAAC 62.776 40.741 0.00 0.00 42.66 3.77
9333 19421 3.320541 GTGGACATGATTTGTTGAACCCA 59.679 43.478 0.00 0.00 39.18 4.51
9336 19424 5.771469 TGATGTGGACATGATTTGTTGAAC 58.229 37.500 0.00 0.00 39.18 3.18
9337 19425 6.040729 AGTTGATGTGGACATGATTTGTTGAA 59.959 34.615 0.00 0.00 39.18 2.69
9338 19426 5.535783 AGTTGATGTGGACATGATTTGTTGA 59.464 36.000 0.00 0.00 39.18 3.18
9340 19428 5.535783 TGAGTTGATGTGGACATGATTTGTT 59.464 36.000 0.00 0.00 39.18 2.83
9341 19429 5.072055 TGAGTTGATGTGGACATGATTTGT 58.928 37.500 0.00 0.00 42.79 2.83
9342 19430 5.632244 TGAGTTGATGTGGACATGATTTG 57.368 39.130 0.00 0.00 36.57 2.32
9343 19431 6.095021 CAGATGAGTTGATGTGGACATGATTT 59.905 38.462 0.00 0.00 36.57 2.17
9344 19432 5.589050 CAGATGAGTTGATGTGGACATGATT 59.411 40.000 0.00 0.00 36.57 2.57
9346 19434 4.510571 CAGATGAGTTGATGTGGACATGA 58.489 43.478 0.00 0.00 36.57 3.07
9348 19436 3.276857 GCAGATGAGTTGATGTGGACAT 58.723 45.455 0.00 0.00 39.70 3.06
9349 19437 2.038820 TGCAGATGAGTTGATGTGGACA 59.961 45.455 0.00 0.00 0.00 4.02
9350 19438 2.676839 CTGCAGATGAGTTGATGTGGAC 59.323 50.000 8.42 0.00 0.00 4.02
9351 19439 2.938314 GCTGCAGATGAGTTGATGTGGA 60.938 50.000 20.43 0.00 0.00 4.02
9353 19441 1.400846 GGCTGCAGATGAGTTGATGTG 59.599 52.381 20.43 0.00 0.00 3.21
9354 19442 1.747709 GGCTGCAGATGAGTTGATGT 58.252 50.000 20.43 0.00 0.00 3.06
9355 19443 0.656259 CGGCTGCAGATGAGTTGATG 59.344 55.000 20.43 0.00 0.00 3.07
9356 19444 0.463295 CCGGCTGCAGATGAGTTGAT 60.463 55.000 20.43 0.00 0.00 2.57
9357 19445 1.078918 CCGGCTGCAGATGAGTTGA 60.079 57.895 20.43 0.00 0.00 3.18
9360 19448 4.479993 GCCCGGCTGCAGATGAGT 62.480 66.667 20.43 0.00 0.00 3.41
9368 19456 2.794820 GATATGAGAGGCCCGGCTGC 62.795 65.000 9.86 1.44 0.00 5.25
9369 19457 1.294780 GATATGAGAGGCCCGGCTG 59.705 63.158 9.86 0.00 0.00 4.85
9371 19459 2.665603 GGATATGAGAGGCCCGGC 59.334 66.667 0.00 0.00 0.00 6.13
9374 19462 0.892063 GAGACGGATATGAGAGGCCC 59.108 60.000 0.00 0.00 0.00 5.80
9376 19464 3.385577 GTTTGAGACGGATATGAGAGGC 58.614 50.000 0.00 0.00 0.00 4.70
9389 19477 2.423926 TCTGTCTGAGCGTTTGAGAC 57.576 50.000 5.70 5.70 37.27 3.36
9391 19479 1.998315 CCATCTGTCTGAGCGTTTGAG 59.002 52.381 0.00 0.00 0.00 3.02
9393 19481 1.728971 GACCATCTGTCTGAGCGTTTG 59.271 52.381 0.00 0.00 41.03 2.93
9394 19482 1.338200 GGACCATCTGTCTGAGCGTTT 60.338 52.381 0.00 0.00 43.89 3.60
9396 19484 1.893786 GGACCATCTGTCTGAGCGT 59.106 57.895 0.00 0.00 43.89 5.07
9397 19485 4.823276 GGACCATCTGTCTGAGCG 57.177 61.111 0.00 0.00 43.89 5.03
9402 19490 0.251832 ACTGACCGGACCATCTGTCT 60.252 55.000 9.46 0.00 43.89 3.41
9403 19491 0.108615 CACTGACCGGACCATCTGTC 60.109 60.000 9.46 0.00 43.67 3.51
9404 19492 0.541998 TCACTGACCGGACCATCTGT 60.542 55.000 9.46 1.90 0.00 3.41
9406 19494 2.277858 GTCACTGACCGGACCATCT 58.722 57.895 9.46 0.00 0.00 2.90
9433 19521 3.165071 AGATCCGGCTGGTTCAATTTTT 58.835 40.909 22.06 0.32 36.58 1.94
9434 19522 2.755103 GAGATCCGGCTGGTTCAATTTT 59.245 45.455 22.06 3.54 36.58 1.82
9435 19523 2.025887 AGAGATCCGGCTGGTTCAATTT 60.026 45.455 22.06 3.89 36.58 1.82
9436 19524 1.561542 AGAGATCCGGCTGGTTCAATT 59.438 47.619 22.06 4.23 36.58 2.32
9437 19525 1.139853 GAGAGATCCGGCTGGTTCAAT 59.860 52.381 22.06 11.39 36.58 2.57
9438 19526 0.537188 GAGAGATCCGGCTGGTTCAA 59.463 55.000 22.06 0.00 36.58 2.69
9439 19527 0.614697 TGAGAGATCCGGCTGGTTCA 60.615 55.000 22.06 11.85 36.58 3.18
9440 19528 0.537188 TTGAGAGATCCGGCTGGTTC 59.463 55.000 12.43 13.30 36.30 3.62
9441 19529 0.984230 TTTGAGAGATCCGGCTGGTT 59.016 50.000 12.43 2.26 36.30 3.67
9443 19531 0.539051 AGTTTGAGAGATCCGGCTGG 59.461 55.000 4.71 4.71 0.00 4.85
9444 19532 2.166459 TGTAGTTTGAGAGATCCGGCTG 59.834 50.000 0.00 0.00 0.00 4.85
9445 19533 2.428890 CTGTAGTTTGAGAGATCCGGCT 59.571 50.000 0.00 0.00 0.00 5.52
9446 19534 2.427453 TCTGTAGTTTGAGAGATCCGGC 59.573 50.000 0.00 0.00 0.00 6.13
9447 19535 3.487711 CGTCTGTAGTTTGAGAGATCCGG 60.488 52.174 0.00 0.00 0.00 5.14
9448 19536 3.374367 TCGTCTGTAGTTTGAGAGATCCG 59.626 47.826 0.00 0.00 0.00 4.18
9449 19537 4.966965 TCGTCTGTAGTTTGAGAGATCC 57.033 45.455 0.00 0.00 0.00 3.36
9450 19538 6.326375 ACATTCGTCTGTAGTTTGAGAGATC 58.674 40.000 0.00 0.00 0.00 2.75
9452 19540 5.617087 CGACATTCGTCTGTAGTTTGAGAGA 60.617 44.000 0.00 0.00 40.23 3.10
9453 19541 4.555360 CGACATTCGTCTGTAGTTTGAGAG 59.445 45.833 0.00 0.00 40.23 3.20
9455 19543 3.608506 CCGACATTCGTCTGTAGTTTGAG 59.391 47.826 0.00 0.00 40.23 3.02
9456 19544 3.571571 CCGACATTCGTCTGTAGTTTGA 58.428 45.455 0.00 0.00 40.23 2.69
9457 19545 2.666508 CCCGACATTCGTCTGTAGTTTG 59.333 50.000 0.00 0.00 40.23 2.93
9458 19546 2.298163 ACCCGACATTCGTCTGTAGTTT 59.702 45.455 0.00 0.00 40.23 2.66
9459 19547 1.891150 ACCCGACATTCGTCTGTAGTT 59.109 47.619 0.00 0.00 40.23 2.24
9460 19548 1.542492 ACCCGACATTCGTCTGTAGT 58.458 50.000 0.00 0.00 40.23 2.73
9462 19550 1.887854 TGAACCCGACATTCGTCTGTA 59.112 47.619 0.00 0.00 40.23 2.74
9463 19551 0.677288 TGAACCCGACATTCGTCTGT 59.323 50.000 0.00 0.00 40.23 3.41
9464 19552 1.660607 CATGAACCCGACATTCGTCTG 59.339 52.381 0.00 0.00 40.23 3.51
9467 19555 0.392461 CCCATGAACCCGACATTCGT 60.392 55.000 0.00 0.00 38.40 3.85
9468 19556 1.714899 GCCCATGAACCCGACATTCG 61.715 60.000 0.00 0.00 40.07 3.34
9469 19557 0.394352 AGCCCATGAACCCGACATTC 60.394 55.000 0.00 0.00 0.00 2.67
9470 19558 0.680921 CAGCCCATGAACCCGACATT 60.681 55.000 0.00 0.00 0.00 2.71
9472 19560 2.220586 TCAGCCCATGAACCCGACA 61.221 57.895 0.00 0.00 34.02 4.35
9473 19561 1.745489 GTCAGCCCATGAACCCGAC 60.745 63.158 0.00 0.00 40.43 4.79
9474 19562 2.668632 GTCAGCCCATGAACCCGA 59.331 61.111 0.00 0.00 40.43 5.14
9477 19565 2.438434 CCGGTCAGCCCATGAACC 60.438 66.667 0.00 0.00 43.24 3.62
9478 19566 3.134127 GCCGGTCAGCCCATGAAC 61.134 66.667 1.90 0.00 42.69 3.18
9479 19567 3.645660 TGCCGGTCAGCCCATGAA 61.646 61.111 1.90 0.00 40.43 2.57
9487 19575 1.410850 ATATGAGGGGTGCCGGTCAG 61.411 60.000 1.90 0.00 0.00 3.51
9488 19576 1.383943 ATATGAGGGGTGCCGGTCA 60.384 57.895 1.90 0.00 0.00 4.02
9489 19577 1.371558 GATATGAGGGGTGCCGGTC 59.628 63.158 1.90 0.00 0.00 4.79
9490 19578 2.147387 GGATATGAGGGGTGCCGGT 61.147 63.158 1.90 0.00 0.00 5.28
9491 19579 2.116983 CTGGATATGAGGGGTGCCGG 62.117 65.000 0.00 0.00 0.00 6.13
9492 19580 1.372683 CTGGATATGAGGGGTGCCG 59.627 63.158 0.00 0.00 0.00 5.69
9493 19581 1.073897 GCTGGATATGAGGGGTGCC 59.926 63.158 0.00 0.00 0.00 5.01
9496 19584 0.328450 TTGGGCTGGATATGAGGGGT 60.328 55.000 0.00 0.00 0.00 4.95
9497 19585 0.852842 TTTGGGCTGGATATGAGGGG 59.147 55.000 0.00 0.00 0.00 4.79
9498 19586 2.158415 ACATTTGGGCTGGATATGAGGG 60.158 50.000 0.00 0.00 0.00 4.30
9499 19587 3.234234 ACATTTGGGCTGGATATGAGG 57.766 47.619 0.00 0.00 0.00 3.86
9500 19588 4.330250 CCTACATTTGGGCTGGATATGAG 58.670 47.826 0.00 0.00 0.00 2.90
9501 19589 3.074390 CCCTACATTTGGGCTGGATATGA 59.926 47.826 0.00 0.00 37.99 2.15
9502 19590 3.424703 CCCTACATTTGGGCTGGATATG 58.575 50.000 0.00 0.00 37.99 1.78
9503 19591 3.814504 CCCTACATTTGGGCTGGATAT 57.185 47.619 0.00 0.00 37.99 1.63
9513 19601 3.244561 ACCTCATATCCGCCCTACATTTG 60.245 47.826 0.00 0.00 0.00 2.32
9514 19602 2.979678 ACCTCATATCCGCCCTACATTT 59.020 45.455 0.00 0.00 0.00 2.32
9517 19605 2.803956 CTACCTCATATCCGCCCTACA 58.196 52.381 0.00 0.00 0.00 2.74
9518 19606 1.477295 GCTACCTCATATCCGCCCTAC 59.523 57.143 0.00 0.00 0.00 3.18
9519 19607 1.618888 GGCTACCTCATATCCGCCCTA 60.619 57.143 0.00 0.00 0.00 3.53
9520 19608 0.905337 GGCTACCTCATATCCGCCCT 60.905 60.000 0.00 0.00 0.00 5.19
9521 19609 1.597461 GGCTACCTCATATCCGCCC 59.403 63.158 0.00 0.00 0.00 6.13
9522 19610 1.597461 GGGCTACCTCATATCCGCC 59.403 63.158 0.00 0.00 36.83 6.13
9524 19612 1.605058 CCCGGGCTACCTCATATCCG 61.605 65.000 8.08 0.00 37.50 4.18
9525 19613 0.252103 TCCCGGGCTACCTCATATCC 60.252 60.000 18.49 0.00 33.28 2.59
9526 19614 0.896226 GTCCCGGGCTACCTCATATC 59.104 60.000 18.49 0.00 33.28 1.63
9528 19616 1.529948 CGTCCCGGGCTACCTCATA 60.530 63.158 18.49 0.00 33.28 2.15
9529 19617 2.838225 CGTCCCGGGCTACCTCAT 60.838 66.667 18.49 0.00 33.28 2.90
9577 19665 1.038130 TTTTTGTGGGGTCCGTGGTG 61.038 55.000 0.00 0.00 0.00 4.17
9578 19666 1.306970 TTTTTGTGGGGTCCGTGGT 59.693 52.632 0.00 0.00 0.00 4.16
9579 19667 4.261701 TTTTTGTGGGGTCCGTGG 57.738 55.556 0.00 0.00 0.00 4.94
9600 19688 4.473520 AGCTCGCCACCCGGATTG 62.474 66.667 0.73 0.00 37.59 2.67
9601 19689 4.162690 GAGCTCGCCACCCGGATT 62.163 66.667 0.73 0.00 37.59 3.01
9605 19693 2.668212 TTTTGAGCTCGCCACCCG 60.668 61.111 9.64 0.00 38.61 5.28
9607 19695 1.172812 AAGGTTTTGAGCTCGCCACC 61.173 55.000 16.63 16.63 0.00 4.61
9610 19698 0.448197 GCTAAGGTTTTGAGCTCGCC 59.552 55.000 9.64 8.64 33.28 5.54
9611 19699 1.443802 AGCTAAGGTTTTGAGCTCGC 58.556 50.000 9.64 2.67 42.97 5.03
9615 19703 4.036852 ACAAAGTGAGCTAAGGTTTTGAGC 59.963 41.667 12.65 0.00 36.42 4.26
9618 19706 4.261614 GGGACAAAGTGAGCTAAGGTTTTG 60.262 45.833 0.00 0.00 0.00 2.44
9619 19707 3.889538 GGGACAAAGTGAGCTAAGGTTTT 59.110 43.478 0.00 0.00 0.00 2.43
9620 19708 3.138468 AGGGACAAAGTGAGCTAAGGTTT 59.862 43.478 0.00 0.00 0.00 3.27
9622 19710 2.303311 GAGGGACAAAGTGAGCTAAGGT 59.697 50.000 0.00 0.00 0.00 3.50
9623 19711 2.569404 AGAGGGACAAAGTGAGCTAAGG 59.431 50.000 0.00 0.00 0.00 2.69
9626 19714 3.176924 AGAGAGGGACAAAGTGAGCTA 57.823 47.619 0.00 0.00 0.00 3.32
9627 19715 2.022718 AGAGAGGGACAAAGTGAGCT 57.977 50.000 0.00 0.00 0.00 4.09
9629 19717 4.565022 GAGAAAGAGAGGGACAAAGTGAG 58.435 47.826 0.00 0.00 0.00 3.51
9630 19718 3.005897 CGAGAAAGAGAGGGACAAAGTGA 59.994 47.826 0.00 0.00 0.00 3.41
9631 19719 3.321497 CGAGAAAGAGAGGGACAAAGTG 58.679 50.000 0.00 0.00 0.00 3.16
9632 19720 2.289133 GCGAGAAAGAGAGGGACAAAGT 60.289 50.000 0.00 0.00 0.00 2.66
9634 19722 1.971357 AGCGAGAAAGAGAGGGACAAA 59.029 47.619 0.00 0.00 0.00 2.83
9635 19723 1.546476 GAGCGAGAAAGAGAGGGACAA 59.454 52.381 0.00 0.00 0.00 3.18
9636 19724 1.178276 GAGCGAGAAAGAGAGGGACA 58.822 55.000 0.00 0.00 0.00 4.02
9638 19726 1.272203 ACAGAGCGAGAAAGAGAGGGA 60.272 52.381 0.00 0.00 0.00 4.20
9639 19727 1.134175 GACAGAGCGAGAAAGAGAGGG 59.866 57.143 0.00 0.00 0.00 4.30
9641 19729 1.815613 TGGACAGAGCGAGAAAGAGAG 59.184 52.381 0.00 0.00 0.00 3.20
9642 19730 1.542030 GTGGACAGAGCGAGAAAGAGA 59.458 52.381 0.00 0.00 0.00 3.10
9643 19731 1.543802 AGTGGACAGAGCGAGAAAGAG 59.456 52.381 0.00 0.00 0.00 2.85
9644 19732 1.542030 GAGTGGACAGAGCGAGAAAGA 59.458 52.381 0.00 0.00 0.00 2.52
9646 19734 0.603569 GGAGTGGACAGAGCGAGAAA 59.396 55.000 0.00 0.00 0.00 2.52
9647 19735 0.251386 AGGAGTGGACAGAGCGAGAA 60.251 55.000 0.00 0.00 0.00 2.87
9648 19736 0.678366 GAGGAGTGGACAGAGCGAGA 60.678 60.000 0.00 0.00 0.00 4.04
9650 19738 0.678366 GAGAGGAGTGGACAGAGCGA 60.678 60.000 0.00 0.00 0.00 4.93
9651 19739 1.662438 GGAGAGGAGTGGACAGAGCG 61.662 65.000 0.00 0.00 0.00 5.03
9652 19740 1.326951 GGGAGAGGAGTGGACAGAGC 61.327 65.000 0.00 0.00 0.00 4.09
9653 19741 0.334676 AGGGAGAGGAGTGGACAGAG 59.665 60.000 0.00 0.00 0.00 3.35
9656 19744 0.251832 GTGAGGGAGAGGAGTGGACA 60.252 60.000 0.00 0.00 0.00 4.02
9657 19745 0.251832 TGTGAGGGAGAGGAGTGGAC 60.252 60.000 0.00 0.00 0.00 4.02
9658 19746 0.251832 GTGTGAGGGAGAGGAGTGGA 60.252 60.000 0.00 0.00 0.00 4.02
9659 19747 0.252012 AGTGTGAGGGAGAGGAGTGG 60.252 60.000 0.00 0.00 0.00 4.00
9660 19748 1.638529 AAGTGTGAGGGAGAGGAGTG 58.361 55.000 0.00 0.00 0.00 3.51
9661 19749 2.252714 GAAAGTGTGAGGGAGAGGAGT 58.747 52.381 0.00 0.00 0.00 3.85
9662 19750 1.552792 GGAAAGTGTGAGGGAGAGGAG 59.447 57.143 0.00 0.00 0.00 3.69
9663 19751 1.645710 GGAAAGTGTGAGGGAGAGGA 58.354 55.000 0.00 0.00 0.00 3.71
9666 19754 1.825474 GATCGGAAAGTGTGAGGGAGA 59.175 52.381 0.00 0.00 0.00 3.71
9668 19756 0.902531 GGATCGGAAAGTGTGAGGGA 59.097 55.000 0.00 0.00 0.00 4.20
9671 19759 2.555199 GATGGGATCGGAAAGTGTGAG 58.445 52.381 0.00 0.00 0.00 3.51
9673 19761 1.065491 TGGATGGGATCGGAAAGTGTG 60.065 52.381 0.00 0.00 0.00 3.82
9674 19762 1.065418 GTGGATGGGATCGGAAAGTGT 60.065 52.381 0.00 0.00 0.00 3.55
9675 19763 1.668419 GTGGATGGGATCGGAAAGTG 58.332 55.000 0.00 0.00 0.00 3.16
9676 19764 0.546598 GGTGGATGGGATCGGAAAGT 59.453 55.000 0.00 0.00 0.00 2.66
9677 19765 0.546122 TGGTGGATGGGATCGGAAAG 59.454 55.000 0.00 0.00 0.00 2.62
9678 19766 1.133823 CATGGTGGATGGGATCGGAAA 60.134 52.381 0.00 0.00 0.00 3.13
9679 19767 0.473755 CATGGTGGATGGGATCGGAA 59.526 55.000 0.00 0.00 0.00 4.30
9680 19768 0.399806 TCATGGTGGATGGGATCGGA 60.400 55.000 0.00 0.00 32.26 4.55
9681 19769 0.694771 ATCATGGTGGATGGGATCGG 59.305 55.000 0.00 0.00 32.26 4.18
9682 19770 1.348696 TCATCATGGTGGATGGGATCG 59.651 52.381 6.03 0.00 43.82 3.69
9684 19772 1.075050 GCTCATCATGGTGGATGGGAT 59.925 52.381 6.03 0.00 46.58 3.85
9685 19773 0.475475 GCTCATCATGGTGGATGGGA 59.525 55.000 6.03 0.00 46.58 4.37
9686 19774 0.184211 TGCTCATCATGGTGGATGGG 59.816 55.000 6.03 0.00 46.42 4.00
9687 19775 1.605753 CTGCTCATCATGGTGGATGG 58.394 55.000 6.03 0.00 43.82 3.51
9688 19776 0.952280 GCTGCTCATCATGGTGGATG 59.048 55.000 6.03 0.00 44.78 3.51
9689 19777 0.844660 AGCTGCTCATCATGGTGGAT 59.155 50.000 6.03 0.00 0.00 3.41
9690 19778 0.179702 GAGCTGCTCATCATGGTGGA 59.820 55.000 24.02 0.00 0.00 4.02
9691 19779 0.818445 GGAGCTGCTCATCATGGTGG 60.818 60.000 28.95 0.00 31.08 4.61
9692 19780 1.158484 CGGAGCTGCTCATCATGGTG 61.158 60.000 28.95 0.00 31.08 4.17
9693 19781 1.145598 CGGAGCTGCTCATCATGGT 59.854 57.895 28.95 0.00 31.08 3.55
9694 19782 1.597302 CCGGAGCTGCTCATCATGG 60.597 63.158 28.95 17.87 31.08 3.66
9695 19783 2.252346 GCCGGAGCTGCTCATCATG 61.252 63.158 28.95 13.72 35.50 3.07
9696 19784 2.110627 GCCGGAGCTGCTCATCAT 59.889 61.111 28.95 0.00 35.50 2.45
9697 19785 3.381333 CTGCCGGAGCTGCTCATCA 62.381 63.158 28.95 20.54 40.80 3.07
9698 19786 2.588314 CTGCCGGAGCTGCTCATC 60.588 66.667 28.95 17.46 40.80 2.92
9724 19812 0.248296 CTCGTAGTTGAGCTCCGAGC 60.248 60.000 21.04 12.80 44.45 5.03
9726 19814 0.035725 TCCTCGTAGTTGAGCTCCGA 60.036 55.000 12.15 11.37 34.42 4.55
9727 19815 0.378962 CTCCTCGTAGTTGAGCTCCG 59.621 60.000 12.15 7.14 34.56 4.63
9729 19817 1.673920 CTCCTCCTCGTAGTTGAGCTC 59.326 57.143 6.82 6.82 34.56 4.09
9732 19820 2.621055 CCATCTCCTCCTCGTAGTTGAG 59.379 54.545 0.00 0.00 35.70 3.02
9739 19827 2.444895 GGGCCATCTCCTCCTCGT 60.445 66.667 4.39 0.00 0.00 4.18
9741 19829 3.884318 GAGGGCCATCTCCTCCTC 58.116 66.667 10.91 0.00 43.71 3.71
9748 19836 2.194056 CAATGCGGAGGGCCATCT 59.806 61.111 18.35 0.00 42.61 2.90
9749 19837 2.124151 ACAATGCGGAGGGCCATC 60.124 61.111 9.46 9.46 42.61 3.51
9763 19851 3.654021 TGGACCACTCCAGCACAA 58.346 55.556 0.00 0.00 42.15 3.33
9769 19857 1.074090 TCCACCTTGGACCACTCCA 60.074 57.895 0.00 0.00 42.67 3.86
9770 19858 3.900888 TCCACCTTGGACCACTCC 58.099 61.111 0.00 0.00 42.67 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.