AutoCloner

Multiple sequence alignment - TraesCS2A01G422200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G422200	chr2A	100.000	2549	0	0	1	2549	677414207	677411659	0.000000e+00	4708.0
1	TraesCS2A01G422200	chr2A	94.799	1961	91	10	592	2545	744582019	744583975	0.000000e+00	3046.0
2	TraesCS2A01G422200	chr2A	94.672	1952	90	11	602	2545	677958469	677956524	0.000000e+00	3016.0
3	TraesCS2A01G422200	chr2A	93.463	1958	106	16	602	2545	213959517	213957568	0.000000e+00	2887.0
4	TraesCS2A01G422200	chr2A	94.286	35	2	0	265	299	728813734	728813768	1.000000e-03	54.7
5	TraesCS2A01G422200	chr7A	95.077	1950	88	8	600	2545	36946198	36948143	0.000000e+00	3062.0
6	TraesCS2A01G422200	chr7D	94.944	1958	78	15	597	2545	63995386	63997331	0.000000e+00	3048.0
7	TraesCS2A01G422200	chr7D	94.667	1725	73	13	829	2545	577661198	577659485	0.000000e+00	2658.0
8	TraesCS2A01G422200	chr7D	94.444	36	2	0	264	299	123202111	123202146	3.540000e-04	56.5
9	TraesCS2A01G422200	chr3D	94.546	1962	87	14	592	2545	475106673	475108622	0.000000e+00	3013.0
10	TraesCS2A01G422200	chr5A	94.353	1948	98	10	602	2545	689446507	689444568	0.000000e+00	2977.0
11	TraesCS2A01G422200	chr5B	94.265	1953	99	9	602	2545	3450172	3448224	0.000000e+00	2974.0
12	TraesCS2A01G422200	chr2B	88.651	608	57	7	1	601	632605037	632604435	0.000000e+00	730.0
13	TraesCS2A01G422200	chr2B	90.909	440	31	6	596	1029	13181546	13181982	1.310000e-162	582.0
14	TraesCS2A01G422200	chr6A	92.308	39	3	0	261	299	23362602	23362640	3.540000e-04	56.5
15	TraesCS2A01G422200	chr6A	94.444	36	2	0	264	299	477135765	477135730	3.540000e-04	56.5
16	TraesCS2A01G422200	chr3B	94.444	36	2	0	264	299	700039637	700039672	3.540000e-04	56.5
17	TraesCS2A01G422200	chr3A	96.875	32	1	0	268	299	8229170	8229201	1.000000e-03	54.7
18	TraesCS2A01G422200	chr1D	100.000	29	0	0	271	299	470567449	470567421	1.000000e-03	54.7
19	TraesCS2A01G422200	chr1A	96.875	32	1	0	268	299	394238501	394238532	1.000000e-03	54.7

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G422200	chr2A	677411659	677414207	2548	True	4708	4708	100.000	1	2549	1	chr2A.!!$R2	2548
1	TraesCS2A01G422200	chr2A	744582019	744583975	1956	False	3046	3046	94.799	592	2545	1	chr2A.!!$F2	1953
2	TraesCS2A01G422200	chr2A	677956524	677958469	1945	True	3016	3016	94.672	602	2545	1	chr2A.!!$R3	1943
3	TraesCS2A01G422200	chr2A	213957568	213959517	1949	True	2887	2887	93.463	602	2545	1	chr2A.!!$R1	1943
4	TraesCS2A01G422200	chr7A	36946198	36948143	1945	False	3062	3062	95.077	600	2545	1	chr7A.!!$F1	1945
5	TraesCS2A01G422200	chr7D	63995386	63997331	1945	False	3048	3048	94.944	597	2545	1	chr7D.!!$F1	1948
6	TraesCS2A01G422200	chr7D	577659485	577661198	1713	True	2658	2658	94.667	829	2545	1	chr7D.!!$R1	1716
7	TraesCS2A01G422200	chr3D	475106673	475108622	1949	False	3013	3013	94.546	592	2545	1	chr3D.!!$F1	1953
8	TraesCS2A01G422200	chr5A	689444568	689446507	1939	True	2977	2977	94.353	602	2545	1	chr5A.!!$R1	1943
9	TraesCS2A01G422200	chr5B	3448224	3450172	1948	True	2974	2974	94.265	602	2545	1	chr5B.!!$R1	1943
10	TraesCS2A01G422200	chr2B	632604435	632605037	602	True	730	730	88.651	1	601	1	chr2B.!!$R1	600

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
358	360	0.178995	TGTTCAGTGCATCCAGCCAA	60.179	50.0	0.0	0.0	44.83	4.52	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1769	1791	0.456221	GCACTTGGCTCTACGCTCTA	59.544	55.0	0.0	0.0	40.25	2.43	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
88	90	8.121305	AGTTCAATGTTTTATCTGGTAATGCA	57.879	30.769	0.00	0.00	0.00	3.96
89	91	8.028938	AGTTCAATGTTTTATCTGGTAATGCAC	58.971	33.333	0.00	0.00	0.00	4.57
100	102	2.752354	TGGTAATGCACTTTGGGAATCG	59.248	45.455	0.00	0.00	0.00	3.34
105	107	3.071874	TGCACTTTGGGAATCGAAGAT	57.928	42.857	0.00	0.00	45.12	2.40
106	108	3.420893	TGCACTTTGGGAATCGAAGATT	58.579	40.909	0.00	0.00	45.12	2.40
131	133	4.884164	ACTAAAGGATGGATTACTTGCTGC	59.116	41.667	0.00	0.00	0.00	5.25
173	175	1.002468	CGTCAAGGTTGAAGTTGGCTG	60.002	52.381	0.00	0.00	39.21	4.85
180	182	0.828762	TTGAAGTTGGCTGGCATGCT	60.829	50.000	18.92	3.85	0.00	3.79
185	187	1.017387	GTTGGCTGGCATGCTAGTAC	58.983	55.000	28.95	22.38	0.00	2.73
196	198	3.738281	GCATGCTAGTACCATCGTCAACT	60.738	47.826	11.37	0.00	0.00	3.16
197	199	3.777465	TGCTAGTACCATCGTCAACTC	57.223	47.619	0.00	0.00	0.00	3.01
198	200	2.096980	TGCTAGTACCATCGTCAACTCG	59.903	50.000	0.00	0.00	0.00	4.18
259	261	1.246649	GTCAACACCATGGACATGCA	58.753	50.000	21.47	0.00	37.49	3.96
273	275	5.754782	TGGACATGCAGTGGTTTCTATATT	58.245	37.500	0.00	0.00	0.00	1.28
285	287	8.434392	AGTGGTTTCTATATTTATAAAGCGGGA	58.566	33.333	3.94	0.00	33.25	5.14
317	319	6.258507	CCTATTTTTGAGTGCTTGTTTGCTTT	59.741	34.615	0.00	0.00	0.00	3.51
324	326	6.234920	TGAGTGCTTGTTTGCTTTACCTATA	58.765	36.000	0.00	0.00	0.00	1.31
326	328	7.088589	AGTGCTTGTTTGCTTTACCTATATG	57.911	36.000	0.00	0.00	0.00	1.78
334	336	5.303259	TGCTTTACCTATATGCATGTCCA	57.697	39.130	10.16	0.00	0.00	4.02
335	337	5.879763	TGCTTTACCTATATGCATGTCCAT	58.120	37.500	10.16	0.00	0.00	3.41
344	346	6.936335	CCTATATGCATGTCCATAAGTGTTCA	59.064	38.462	10.16	0.00	31.96	3.18
351	353	4.002982	TGTCCATAAGTGTTCAGTGCATC	58.997	43.478	0.00	0.00	0.00	3.91
358	360	0.178995	TGTTCAGTGCATCCAGCCAA	60.179	50.000	0.00	0.00	44.83	4.52
366	368	0.749454	GCATCCAGCCAAAGGACGAT	60.749	55.000	0.00	0.00	38.13	3.73
367	369	1.475034	GCATCCAGCCAAAGGACGATA	60.475	52.381	0.00	0.00	38.13	2.92
371	373	1.560923	CAGCCAAAGGACGATACTCG	58.439	55.000	0.00	0.00	46.93	4.18
372	374	0.179108	AGCCAAAGGACGATACTCGC	60.179	55.000	0.00	0.00	45.12	5.03
375	377	0.525668	CAAAGGACGATACTCGCGCT	60.526	55.000	5.56	0.00	45.12	5.92
413	415	9.927668	CTTCCTAGAGAAATTTTGCCAAATAAA	57.072	29.630	0.00	0.00	32.88	1.40
426	428	8.592105	TTTGCCAAATAAACTCATCTTTTCTG	57.408	30.769	0.00	0.00	0.00	3.02
437	439	8.491331	AACTCATCTTTTCTGCTAATTCTCTC	57.509	34.615	0.00	0.00	0.00	3.20
470	472	1.541233	GGCGTCCTTGATCACCATAGG	60.541	57.143	4.97	4.97	0.00	2.57
475	477	1.212688	CCTTGATCACCATAGGCCACA	59.787	52.381	5.01	0.00	0.00	4.17
492	494	3.233980	ACTCTGCCACGGTGCTGA	61.234	61.111	1.68	7.19	37.59	4.26
494	496	1.376424	CTCTGCCACGGTGCTGAAT	60.376	57.895	1.68	0.00	38.50	2.57
498	500	2.690778	GCCACGGTGCTGAATCCAC	61.691	63.158	1.68	0.00	0.00	4.02
517	519	1.529309	GGGACTTGGGCTCCTGATC	59.471	63.158	0.00	0.00	0.00	2.92
518	520	1.274703	GGGACTTGGGCTCCTGATCA	61.275	60.000	0.00	0.00	0.00	2.92
525	529	1.918262	TGGGCTCCTGATCAGAAACAT	59.082	47.619	24.62	0.00	0.00	2.71
531	535	5.303078	GGCTCCTGATCAGAAACATAGTCTA	59.697	44.000	24.62	0.00	0.00	2.59
547	551	7.783042	ACATAGTCTATTCTTCTTGGGTGTAC	58.217	38.462	0.00	0.00	0.00	2.90
563	571	1.064240	TGTACCACATCGCCCTCTCTA	60.064	52.381	0.00	0.00	0.00	2.43
571	579	4.153117	CACATCGCCCTCTCTATTTTATGC	59.847	45.833	0.00	0.00	0.00	3.14
686	694	1.144913	TGCTCAGTTTTGCCCCTAGTT	59.855	47.619	0.00	0.00	0.00	2.24
827	835	2.034687	CTTGTGGGACCCAGCAGG	59.965	66.667	15.52	11.77	43.78	4.85
928	940	4.436998	GGTGACCACGGCGAGAGG	62.437	72.222	16.62	15.08	36.60	3.69
1160	1176	0.242555	TACGTGTGCAGCGAGAATGA	59.757	50.000	16.16	0.00	0.00	2.57
1178	1194	1.065709	TGAGGTAAGAATCGGGGCAAC	60.066	52.381	0.00	0.00	0.00	4.17
1233	1249	3.370104	TGGGTTGATCTGTTTGGTGTTT	58.630	40.909	0.00	0.00	0.00	2.83
1294	1310	4.205587	GGCCAAGACTCTGATGAATGAAT	58.794	43.478	0.00	0.00	0.00	2.57
1339	1355	3.422303	GCATGCTGCCACGAACGA	61.422	61.111	11.37	0.00	37.42	3.85
1340	1356	2.753966	GCATGCTGCCACGAACGAT	61.754	57.895	11.37	0.00	37.42	3.73
1413	1429	3.095332	TGACAGAGAGCTAGCTGTTGAT	58.905	45.455	24.99	7.21	44.77	2.57
1488	1505	7.390162	CCAATACCCATTTGCAAATACTTTTGT	59.610	33.333	23.69	15.48	43.43	2.83
1515	1532	6.468333	TTTGTAGGTATGGTAATCGCACTA	57.532	37.500	0.00	0.00	0.00	2.74
1566	1583	5.450965	GGCATGAACTATGGAGGAATTTGTG	60.451	44.000	0.00	0.00	37.26	3.33
1579	1596	6.312180	GGAGGAATTTGTGATCTTGAAATTGC	59.688	38.462	14.94	14.94	37.55	3.56
1724	1744	5.654603	TTGATCAATGAAATGCAGCTCTT	57.345	34.783	3.38	0.00	0.00	2.85
1769	1791	1.072173	GGTTGCTCTTGGGCCAAATTT	59.928	47.619	21.28	0.00	0.00	1.82
2040	2067	4.156556	GTCATGAAAAATGTGCCTCAGCTA	59.843	41.667	0.00	0.00	40.80	3.32
2057	2084	5.020795	TCAGCTATGGTAGAGGTTTACACA	58.979	41.667	0.00	0.00	0.00	3.72
2238	2267	1.537776	CGCTAGGACAGATGGCAAGAG	60.538	57.143	0.00	0.00	0.00	2.85
2319	2352	6.481954	AAATAGTGAGACCGTGAATGTTTC	57.518	37.500	0.00	0.00	0.00	2.78
2351	2384	6.163476	GTGAGAGTGGTTTTCCTTTGTTTTT	58.837	36.000	0.00	0.00	41.38	1.94
2434	2467	4.139038	GGTTAGAGTGGCACTTGGTTTAA	58.861	43.478	22.98	12.25	0.00	1.52
2436	2469	3.857157	AGAGTGGCACTTGGTTTAAGA	57.143	42.857	22.98	0.00	39.76	2.10
2545	2583	3.118038	TCACCCCCTCCGATTTTCATTAG	60.118	47.826	0.00	0.00	0.00	1.73
2546	2584	2.174854	ACCCCCTCCGATTTTCATTAGG	59.825	50.000	0.00	0.00	0.00	2.69
2547	2585	2.489073	CCCCCTCCGATTTTCATTAGGG	60.489	54.545	0.00	0.00	42.85	3.53
2548	2586	2.174854	CCCCTCCGATTTTCATTAGGGT	59.825	50.000	0.00	0.00	41.85	4.34

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
27	29	5.895636	TGGAGTGAAATGCGTCAATAATT	57.104	34.783	0.00	0.00	0.00	1.40
29	31	4.940654	TCATGGAGTGAAATGCGTCAATAA	59.059	37.500	0.00	0.00	32.78	1.40
30	32	4.512484	TCATGGAGTGAAATGCGTCAATA	58.488	39.130	0.00	0.00	32.78	1.90
32	34	2.777094	TCATGGAGTGAAATGCGTCAA	58.223	42.857	0.00	0.00	32.78	3.18
71	73	6.071616	TCCCAAAGTGCATTACCAGATAAAAC	60.072	38.462	0.00	0.00	0.00	2.43
76	78	3.737559	TCCCAAAGTGCATTACCAGAT	57.262	42.857	0.00	0.00	0.00	2.90
88	90	8.857694	TTTAGTTAATCTTCGATTCCCAAAGT	57.142	30.769	0.00	0.00	0.00	2.66
89	91	8.398665	CCTTTAGTTAATCTTCGATTCCCAAAG	58.601	37.037	0.00	0.00	0.00	2.77
105	107	7.067008	GCAGCAAGTAATCCATCCTTTAGTTAA	59.933	37.037	0.00	0.00	0.00	2.01
106	108	6.542370	GCAGCAAGTAATCCATCCTTTAGTTA	59.458	38.462	0.00	0.00	0.00	2.24
131	133	0.454600	GACCAATGATGCCTGCACTG	59.545	55.000	0.00	0.00	0.00	3.66
167	169	0.107214	GGTACTAGCATGCCAGCCAA	60.107	55.000	15.66	0.00	34.23	4.52
173	175	1.068588	TGACGATGGTACTAGCATGCC	59.931	52.381	15.66	0.00	36.31	4.40
180	182	3.603532	ACTCGAGTTGACGATGGTACTA	58.396	45.455	13.58	0.00	41.39	1.82
185	187	3.054276	GAGTACTCGAGTTGACGATGG	57.946	52.381	25.44	0.00	41.39	3.51
198	200	3.008330	TCAGTTAGGCAGTCGAGTACTC	58.992	50.000	13.18	13.18	35.76	2.59
259	261	8.434392	TCCCGCTTTATAAATATAGAAACCACT	58.566	33.333	0.00	0.00	0.00	4.00
273	275	2.093341	AGGCTTTCGTCCCGCTTTATAA	60.093	45.455	0.00	0.00	0.00	0.98
285	287	3.821033	AGCACTCAAAAATAGGCTTTCGT	59.179	39.130	0.00	0.00	0.00	3.85
287	289	5.532557	ACAAGCACTCAAAAATAGGCTTTC	58.467	37.500	0.00	0.00	39.36	2.62
291	293	4.084380	GCAAACAAGCACTCAAAAATAGGC	60.084	41.667	0.00	0.00	0.00	3.93
292	294	5.291971	AGCAAACAAGCACTCAAAAATAGG	58.708	37.500	0.00	0.00	36.85	2.57
300	302	3.287222	AGGTAAAGCAAACAAGCACTCA	58.713	40.909	0.00	0.00	36.85	3.41
317	319	7.553504	ACACTTATGGACATGCATATAGGTA	57.446	36.000	0.00	0.00	0.00	3.08
324	326	4.397103	CACTGAACACTTATGGACATGCAT	59.603	41.667	0.00	0.00	0.00	3.96
326	328	3.426695	GCACTGAACACTTATGGACATGC	60.427	47.826	0.00	0.00	0.00	4.06
334	336	3.012518	GCTGGATGCACTGAACACTTAT	58.987	45.455	0.00	0.00	42.31	1.73
335	337	2.426522	GCTGGATGCACTGAACACTTA	58.573	47.619	0.00	0.00	42.31	2.24
344	346	0.610232	GTCCTTTGGCTGGATGCACT	60.610	55.000	0.00	0.00	45.15	4.40
351	353	1.941325	GAGTATCGTCCTTTGGCTGG	58.059	55.000	0.00	0.00	0.00	4.85
375	377	2.840203	CTAGGAAGAGGGTGGGGGCA	62.840	65.000	0.00	0.00	0.00	5.36
386	388	7.781324	ATTTGGCAAAATTTCTCTAGGAAGA	57.219	32.000	17.70	0.00	31.76	2.87
413	415	7.850193	AGAGAGAATTAGCAGAAAAGATGAGT	58.150	34.615	0.00	0.00	0.00	3.41
426	428	7.763985	GCCAGAGGATTAATAGAGAGAATTAGC	59.236	40.741	0.00	0.00	0.00	3.09
434	436	3.827302	GGACGCCAGAGGATTAATAGAGA	59.173	47.826	0.00	0.00	0.00	3.10
437	439	4.039245	TCAAGGACGCCAGAGGATTAATAG	59.961	45.833	0.00	0.00	0.00	1.73
475	477	2.116983	ATTCAGCACCGTGGCAGAGT	62.117	55.000	0.00	0.00	35.83	3.24
492	494	2.198304	GAGCCCAAGTCCCGTGGATT	62.198	60.000	0.00	0.00	38.54	3.01
494	496	3.319198	GAGCCCAAGTCCCGTGGA	61.319	66.667	0.00	0.00	38.54	4.02
498	500	2.317149	GATCAGGAGCCCAAGTCCCG	62.317	65.000	0.00	0.00	34.21	5.14
517	519	8.043710	ACCCAAGAAGAATAGACTATGTTTCTG	58.956	37.037	16.54	12.40	0.00	3.02
518	520	8.043710	CACCCAAGAAGAATAGACTATGTTTCT	58.956	37.037	12.61	12.61	0.00	2.52
525	529	6.258354	TGGTACACCCAAGAAGAATAGACTA	58.742	40.000	0.00	0.00	41.50	2.59
547	551	2.918712	AAATAGAGAGGGCGATGTGG	57.081	50.000	0.00	0.00	0.00	4.17
554	562	3.251004	CCAACGCATAAAATAGAGAGGGC	59.749	47.826	0.00	0.00	0.00	5.19
563	571	7.548780	ACATTTTAGATTGCCAACGCATAAAAT	59.451	29.630	8.20	8.20	46.67	1.82
571	579	9.950680	AATATAAGACATTTTAGATTGCCAACG	57.049	29.630	0.00	0.00	0.00	4.10
604	612	8.454106	CACCACTGAGGACAAAAAGATAATTAG	58.546	37.037	0.00	0.00	41.22	1.73
619	627	1.899814	GTACATGGACACCACTGAGGA	59.100	52.381	2.19	0.00	41.22	3.71
780	788	6.092092	CGTGCAATGGTCTGAATAAAATTGA	58.908	36.000	0.00	0.00	0.00	2.57
827	835	1.153667	CTCTCTGCTCAACGGCTCC	60.154	63.158	0.00	0.00	0.00	4.70
949	965	4.227134	CGCGCCCTCCACTGCTAT	62.227	66.667	0.00	0.00	0.00	2.97
1092	1108	1.974957	TGAGAAACCCTCCGATCAACA	59.025	47.619	0.00	0.00	41.25	3.33
1160	1176	1.065418	CAGTTGCCCCGATTCTTACCT	60.065	52.381	0.00	0.00	0.00	3.08
1197	1213	3.094572	CAACCCATTGCTCAAAGATCCT	58.905	45.455	0.00	0.00	0.00	3.24
1233	1249	3.354948	AAGAAGCATGTCACCTGCATA	57.645	42.857	7.87	0.00	42.15	3.14
1294	1310	4.082408	CCATTCTTCATGCTCTTCTTGCAA	60.082	41.667	0.00	0.00	44.01	4.08
1413	1429	6.688073	ACCTTCTTCTTCAACATCCTAAGA	57.312	37.500	0.00	0.00	0.00	2.10
1488	1505	4.513692	GCGATTACCATACCTACAAATGCA	59.486	41.667	0.00	0.00	0.00	3.96
1566	1583	8.592998	GTGAATTTCTCATGCAATTTCAAGATC	58.407	33.333	12.42	0.00	36.14	2.75
1724	1744	2.346766	TTGACAGAAAGGCAGAGCAA	57.653	45.000	0.00	0.00	35.94	3.91
1769	1791	0.456221	GCACTTGGCTCTACGCTCTA	59.544	55.000	0.00	0.00	40.25	2.43
1795	1817	1.406539	GATGCAGTTGGCCCATTAGTG	59.593	52.381	0.00	0.00	43.89	2.74
2023	2050	3.434309	ACCATAGCTGAGGCACATTTTT	58.566	40.909	0.00	0.00	41.70	1.94
2040	2067	4.843728	CACCATGTGTAAACCTCTACCAT	58.156	43.478	0.00	0.00	0.00	3.55
2057	2084	7.999450	AAATGTTCATTTATTTTGGCACCAT	57.001	28.000	8.73	0.00	0.00	3.55
2169	2198	2.350895	CATGCGGTCCTGGGTTCA	59.649	61.111	0.00	0.00	0.00	3.18
2238	2267	2.307686	TCCTTCCCTACCCATGTCAAAC	59.692	50.000	0.00	0.00	0.00	2.93
2319	2352	2.734723	CCACTCTCACGCGTGTGG	60.735	66.667	35.74	30.47	46.42	4.17
2351	2384	3.640967	CCAACCCTCCAAAATTTCAGTGA	59.359	43.478	0.00	0.00	0.00	3.41
2434	2467	2.330216	ACCAAGTGCCACTCTAACTCT	58.670	47.619	0.00	0.00	0.00	3.24
2436	2469	3.577805	AAACCAAGTGCCACTCTAACT	57.422	42.857	0.00	0.00	0.00	2.24
2502	2536	5.123027	GTGAGAAGCCCTCTGTTTTATTCAG	59.877	44.000	5.47	0.00	42.44	3.02
2508	2546	1.202940	GGGTGAGAAGCCCTCTGTTTT	60.203	52.381	5.47	0.00	42.81	2.43

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.