Multiple sequence alignment - TraesCS2A01G422100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G422100 chr2A 100.000 2319 0 0 1 2319 677369619 677367301 0.000000e+00 4283.0
1 TraesCS2A01G422100 chr2A 91.403 1454 87 20 812 2235 677039687 677038242 0.000000e+00 1958.0
2 TraesCS2A01G422100 chr2A 100.000 715 0 0 2575 3289 677367045 677366331 0.000000e+00 1321.0
3 TraesCS2A01G422100 chr2A 92.581 620 15 7 2677 3289 668030786 668030191 0.000000e+00 861.0
4 TraesCS2A01G422100 chr2A 92.416 567 33 6 503 1069 677049567 677049011 0.000000e+00 800.0
5 TraesCS2A01G422100 chr2A 93.443 61 4 0 3179 3239 139907353 139907413 1.260000e-14 91.6
6 TraesCS2A01G422100 chr2D 92.512 1923 79 21 325 2231 533030616 533028743 0.000000e+00 2693.0
7 TraesCS2A01G422100 chr2D 88.068 1475 103 27 810 2235 532500126 532498676 0.000000e+00 1681.0
8 TraesCS2A01G422100 chr2D 83.661 1579 196 37 791 2319 532621464 532619898 0.000000e+00 1430.0
9 TraesCS2A01G422100 chr2D 98.246 57 0 1 2264 2319 533028647 533028591 7.510000e-17 99.0
10 TraesCS2A01G422100 chr2B 86.417 1524 109 40 325 1789 632567227 632565743 0.000000e+00 1578.0
11 TraesCS2A01G422100 chr2B 84.251 1435 143 34 854 2225 632513667 632512253 0.000000e+00 1321.0
12 TraesCS2A01G422100 chrUn 83.661 1579 196 37 791 2319 25995682 25994116 0.000000e+00 1430.0
13 TraesCS2A01G422100 chrUn 83.661 1579 196 36 791 2319 183931243 183932809 0.000000e+00 1430.0
14 TraesCS2A01G422100 chrUn 83.597 1579 197 36 791 2319 255746867 255748433 0.000000e+00 1424.0
15 TraesCS2A01G422100 chrUn 83.597 1579 197 36 791 2319 283940429 283938863 0.000000e+00 1424.0
16 TraesCS2A01G422100 chrUn 83.534 1579 198 37 791 2319 253003431 253001865 0.000000e+00 1419.0
17 TraesCS2A01G422100 chrUn 83.534 1579 198 36 791 2319 318906473 318908039 0.000000e+00 1419.0
18 TraesCS2A01G422100 chrUn 85.936 1287 153 20 1060 2319 384135234 384133949 0.000000e+00 1349.0
19 TraesCS2A01G422100 chrUn 84.003 1369 174 24 791 2126 382372064 382370708 0.000000e+00 1273.0
20 TraesCS2A01G422100 chrUn 97.727 44 1 0 2682 2725 108733795 108733838 3.520000e-10 76.8
21 TraesCS2A01G422100 chrUn 88.710 62 5 2 2664 2725 308142958 308142899 1.270000e-09 75.0
22 TraesCS2A01G422100 chrUn 88.710 62 5 2 2664 2725 369332791 369332850 1.270000e-09 75.0
23 TraesCS2A01G422100 chrUn 97.561 41 1 0 2685 2725 20618781 20618821 1.640000e-08 71.3
24 TraesCS2A01G422100 chrUn 95.455 44 2 0 2682 2725 75273405 75273448 1.640000e-08 71.3
25 TraesCS2A01G422100 chrUn 95.455 44 2 0 2682 2725 108763075 108763032 1.640000e-08 71.3
26 TraesCS2A01G422100 chrUn 95.455 44 2 0 2682 2725 313569450 313569493 1.640000e-08 71.3
27 TraesCS2A01G422100 chrUn 97.561 41 1 0 2685 2725 342605243 342605203 1.640000e-08 71.3
28 TraesCS2A01G422100 chrUn 97.561 41 1 0 2685 2725 465413021 465412981 1.640000e-08 71.3
29 TraesCS2A01G422100 chrUn 100.000 33 0 0 2693 2725 340997453 340997485 9.850000e-06 62.1
30 TraesCS2A01G422100 chr7A 95.955 618 13 5 2675 3285 664276265 664275653 0.000000e+00 992.0
31 TraesCS2A01G422100 chr1A 94.013 618 23 9 2677 3286 409948627 409949238 0.000000e+00 924.0
32 TraesCS2A01G422100 chr1A 93.558 326 10 7 2966 3286 453533456 453533775 2.970000e-130 475.0
33 TraesCS2A01G422100 chr1A 97.945 146 2 1 2676 2821 453532858 453533002 5.450000e-63 252.0
34 TraesCS2A01G422100 chr1A 92.157 102 4 2 2684 2782 258875574 258875674 1.230000e-29 141.0
35 TraesCS2A01G422100 chr1A 94.545 55 3 0 125 179 560819184 560819238 5.850000e-13 86.1
36 TraesCS2A01G422100 chr1A 88.710 62 5 2 2664 2725 588184703 588184762 1.270000e-09 75.0
37 TraesCS2A01G422100 chr6B 89.372 621 39 10 2677 3289 717601895 717601294 0.000000e+00 756.0
38 TraesCS2A01G422100 chr7B 90.112 445 37 6 31 473 154176486 154176047 3.680000e-159 571.0
39 TraesCS2A01G422100 chr7D 87.665 454 39 10 31 476 184579997 184579553 2.260000e-141 512.0
40 TraesCS2A01G422100 chr7D 79.418 447 61 23 33 473 615950011 615950432 1.490000e-73 287.0
41 TraesCS2A01G422100 chr7D 93.333 60 4 0 3178 3237 598739761 598739820 4.520000e-14 89.8
42 TraesCS2A01G422100 chr7D 72.500 320 61 21 37 342 398817999 398817693 9.780000e-11 78.7
43 TraesCS2A01G422100 chr7D 75.145 173 32 10 38 204 230890791 230890624 1.640000e-08 71.3
44 TraesCS2A01G422100 chr6D 86.070 402 34 15 2785 3172 469039982 469039589 2.360000e-111 412.0
45 TraesCS2A01G422100 chr6D 89.623 106 5 4 2680 2782 469040050 469039948 2.660000e-26 130.0
46 TraesCS2A01G422100 chr6D 91.803 61 4 1 3179 3239 16127401 16127342 2.100000e-12 84.2
47 TraesCS2A01G422100 chr6D 91.803 61 4 1 3179 3239 16135142 16135083 2.100000e-12 84.2
48 TraesCS2A01G422100 chr6D 91.803 61 4 1 3179 3239 352158643 352158702 2.100000e-12 84.2
49 TraesCS2A01G422100 chr6D 91.379 58 5 0 2677 2734 292399967 292399910 2.720000e-11 80.5
50 TraesCS2A01G422100 chr6D 94.118 51 3 0 2675 2725 453197172 453197222 9.780000e-11 78.7
51 TraesCS2A01G422100 chr6D 94.000 50 3 0 2676 2725 377820331 377820380 3.520000e-10 76.8
52 TraesCS2A01G422100 chr6D 97.619 42 1 0 3184 3225 6937702 6937661 4.550000e-09 73.1
53 TraesCS2A01G422100 chr6D 97.619 42 1 0 3184 3225 16129130 16129089 4.550000e-09 73.1
54 TraesCS2A01G422100 chr6D 97.619 42 1 0 3184 3225 352156675 352156716 4.550000e-09 73.1
55 TraesCS2A01G422100 chr5A 85.194 412 36 18 2842 3245 33098981 33099375 1.840000e-107 399.0
56 TraesCS2A01G422100 chr5A 92.405 79 4 1 2676 2754 33098781 33098857 9.650000e-21 111.0
57 TraesCS2A01G422100 chr5A 90.909 66 5 1 408 473 51746710 51746774 1.630000e-13 87.9
58 TraesCS2A01G422100 chr5A 97.959 49 1 0 2677 2725 492996368 492996320 5.850000e-13 86.1
59 TraesCS2A01G422100 chr1B 81.888 519 46 33 2677 3179 130680210 130680696 8.550000e-106 394.0
60 TraesCS2A01G422100 chr1B 91.525 59 5 0 2667 2725 481324968 481325026 7.560000e-12 82.4
61 TraesCS2A01G422100 chr3B 86.479 355 19 6 2937 3286 143523814 143524144 2.410000e-96 363.0
62 TraesCS2A01G422100 chr3B 93.082 159 8 2 2677 2834 143523669 143523825 2.550000e-56 230.0
63 TraesCS2A01G422100 chr3B 83.133 83 9 4 136 216 61530955 61530876 1.640000e-08 71.3
64 TraesCS2A01G422100 chr3A 78.930 598 79 34 2673 3245 686543178 686543753 2.410000e-96 363.0
65 TraesCS2A01G422100 chr3A 89.908 109 5 4 2677 2782 624178259 624178364 5.720000e-28 135.0
66 TraesCS2A01G422100 chr3A 88.608 79 6 2 3178 3254 686546247 686546324 3.490000e-15 93.5
67 TraesCS2A01G422100 chr3A 93.220 59 4 0 3179 3237 707099017 707098959 1.630000e-13 87.9
68 TraesCS2A01G422100 chr3A 89.552 67 6 1 407 473 724523918 724523983 2.100000e-12 84.2
69 TraesCS2A01G422100 chr1D 79.167 456 70 19 31 473 46460271 46459828 3.210000e-75 292.0
70 TraesCS2A01G422100 chr1D 98.000 50 1 0 2676 2725 332968996 332968947 1.630000e-13 87.9
71 TraesCS2A01G422100 chr1D 91.803 61 4 1 3179 3239 17416453 17416512 2.100000e-12 84.2
72 TraesCS2A01G422100 chr1D 91.525 59 5 0 3179 3237 421461218 421461276 7.560000e-12 82.4
73 TraesCS2A01G422100 chr1D 94.118 51 3 0 3185 3235 421461036 421461086 9.780000e-11 78.7
74 TraesCS2A01G422100 chr1D 93.878 49 3 0 3178 3226 62721570 62721618 1.270000e-09 75.0
75 TraesCS2A01G422100 chr1D 88.710 62 5 2 2664 2725 488720466 488720525 1.270000e-09 75.0
76 TraesCS2A01G422100 chr1D 92.157 51 4 0 2675 2725 57313313 57313263 4.550000e-09 73.1
77 TraesCS2A01G422100 chr1D 92.157 51 4 0 2675 2725 112352032 112352082 4.550000e-09 73.1
78 TraesCS2A01G422100 chr3D 75.676 444 81 19 37 473 547503413 547503836 2.590000e-46 196.0
79 TraesCS2A01G422100 chr3D 75.829 422 67 24 59 473 547617558 547617951 7.250000e-42 182.0
80 TraesCS2A01G422100 chr3D 93.443 61 3 1 3179 3239 548631547 548631488 4.520000e-14 89.8
81 TraesCS2A01G422100 chr3D 91.803 61 5 0 3179 3239 548631735 548631675 5.850000e-13 86.1
82 TraesCS2A01G422100 chr6A 76.206 311 51 20 32 331 188307956 188307658 3.420000e-30 143.0
83 TraesCS2A01G422100 chr6A 90.625 64 6 0 3184 3247 615419598 615419535 5.850000e-13 86.1
84 TraesCS2A01G422100 chr6A 92.857 56 4 0 3178 3233 407159792 407159737 7.560000e-12 82.4
85 TraesCS2A01G422100 chr6A 90.909 55 5 0 3178 3232 407161772 407161718 1.270000e-09 75.0
86 TraesCS2A01G422100 chr5D 96.000 50 2 0 2676 2725 388860954 388861003 7.560000e-12 82.4
87 TraesCS2A01G422100 chr5D 93.878 49 3 0 3178 3226 242850784 242850832 1.270000e-09 75.0
88 TraesCS2A01G422100 chr5D 88.525 61 5 2 2665 2725 246302944 246302886 4.550000e-09 73.1
89 TraesCS2A01G422100 chr5D 93.617 47 2 1 3178 3224 286383484 286383439 5.890000e-08 69.4
90 TraesCS2A01G422100 chr4D 96.000 50 2 0 2676 2725 234705179 234705228 7.560000e-12 82.4
91 TraesCS2A01G422100 chr4D 92.308 52 4 0 2675 2726 318742272 318742323 1.270000e-09 75.0
92 TraesCS2A01G422100 chr4D 92.000 50 4 0 2676 2725 7421932 7421981 1.640000e-08 71.3
93 TraesCS2A01G422100 chr4D 92.000 50 4 0 2676 2725 335749010 335749059 1.640000e-08 71.3
94 TraesCS2A01G422100 chr4D 90.385 52 5 0 2675 2726 6777338 6777287 5.890000e-08 69.4
95 TraesCS2A01G422100 chr4B 95.918 49 2 0 2677 2725 104812923 104812971 2.720000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G422100 chr2A 677366331 677369619 3288 True 2802.00 4283 100.0000 1 3289 2 chr2A.!!$R4 3288
1 TraesCS2A01G422100 chr2A 677038242 677039687 1445 True 1958.00 1958 91.4030 812 2235 1 chr2A.!!$R2 1423
2 TraesCS2A01G422100 chr2A 668030191 668030786 595 True 861.00 861 92.5810 2677 3289 1 chr2A.!!$R1 612
3 TraesCS2A01G422100 chr2A 677049011 677049567 556 True 800.00 800 92.4160 503 1069 1 chr2A.!!$R3 566
4 TraesCS2A01G422100 chr2D 532498676 532500126 1450 True 1681.00 1681 88.0680 810 2235 1 chr2D.!!$R1 1425
5 TraesCS2A01G422100 chr2D 532619898 532621464 1566 True 1430.00 1430 83.6610 791 2319 1 chr2D.!!$R2 1528
6 TraesCS2A01G422100 chr2D 533028591 533030616 2025 True 1396.00 2693 95.3790 325 2319 2 chr2D.!!$R3 1994
7 TraesCS2A01G422100 chr2B 632565743 632567227 1484 True 1578.00 1578 86.4170 325 1789 1 chr2B.!!$R2 1464
8 TraesCS2A01G422100 chr2B 632512253 632513667 1414 True 1321.00 1321 84.2510 854 2225 1 chr2B.!!$R1 1371
9 TraesCS2A01G422100 chrUn 25994116 25995682 1566 True 1430.00 1430 83.6610 791 2319 1 chrUn.!!$R1 1528
10 TraesCS2A01G422100 chrUn 183931243 183932809 1566 False 1430.00 1430 83.6610 791 2319 1 chrUn.!!$F4 1528
11 TraesCS2A01G422100 chrUn 255746867 255748433 1566 False 1424.00 1424 83.5970 791 2319 1 chrUn.!!$F5 1528
12 TraesCS2A01G422100 chrUn 283938863 283940429 1566 True 1424.00 1424 83.5970 791 2319 1 chrUn.!!$R4 1528
13 TraesCS2A01G422100 chrUn 253001865 253003431 1566 True 1419.00 1419 83.5340 791 2319 1 chrUn.!!$R3 1528
14 TraesCS2A01G422100 chrUn 318906473 318908039 1566 False 1419.00 1419 83.5340 791 2319 1 chrUn.!!$F7 1528
15 TraesCS2A01G422100 chrUn 384133949 384135234 1285 True 1349.00 1349 85.9360 1060 2319 1 chrUn.!!$R8 1259
16 TraesCS2A01G422100 chrUn 382370708 382372064 1356 True 1273.00 1273 84.0030 791 2126 1 chrUn.!!$R7 1335
17 TraesCS2A01G422100 chr7A 664275653 664276265 612 True 992.00 992 95.9550 2675 3285 1 chr7A.!!$R1 610
18 TraesCS2A01G422100 chr1A 409948627 409949238 611 False 924.00 924 94.0130 2677 3286 1 chr1A.!!$F2 609
19 TraesCS2A01G422100 chr1A 453532858 453533775 917 False 363.50 475 95.7515 2676 3286 2 chr1A.!!$F5 610
20 TraesCS2A01G422100 chr6B 717601294 717601895 601 True 756.00 756 89.3720 2677 3289 1 chr6B.!!$R1 612
21 TraesCS2A01G422100 chr5A 33098781 33099375 594 False 255.00 399 88.7995 2676 3245 2 chr5A.!!$F2 569
22 TraesCS2A01G422100 chr3A 686543178 686546324 3146 False 228.25 363 83.7690 2673 3254 2 chr3A.!!$F3 581

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
295 296 0.035725 GGGCGGTATAGGTAATGGGC 60.036 60.0 0.0 0.0 0.00 5.36 F
365 366 0.752658 AAAAGCCCAAACCAGCTCAC 59.247 50.0 0.0 0.0 38.74 3.51 F
1626 1787 0.821711 GTACAGGTTGTTGCTGGGCA 60.822 55.0 0.0 0.0 36.47 5.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1721 1882 1.221840 CTATCGCAGTTGCTGGGGT 59.778 57.895 12.16 8.46 43.27 4.95 R
2233 2408 1.475280 ACGTAGCTTAGCATGGAACGA 59.525 47.619 17.58 0.00 33.40 3.85 R
2609 2852 0.098905 GCATGCACTGATCACTGCTG 59.901 55.000 22.61 18.70 34.29 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 9.534565 TTAAATAAACTTGCACATAACTTTGCA 57.465 25.926 0.00 0.00 46.93 4.08
66 67 8.514136 TGCACATAACTTTGCACTAAAATTAC 57.486 30.769 0.00 0.00 43.79 1.89
67 68 8.138074 TGCACATAACTTTGCACTAAAATTACA 58.862 29.630 0.00 0.00 43.79 2.41
68 69 8.424731 GCACATAACTTTGCACTAAAATTACAC 58.575 33.333 0.00 0.00 38.68 2.90
69 70 9.677567 CACATAACTTTGCACTAAAATTACACT 57.322 29.630 0.00 0.00 0.00 3.55
74 75 8.996024 ACTTTGCACTAAAATTACACTTTTGT 57.004 26.923 0.00 0.00 40.02 2.83
85 86 9.471084 AAAATTACACTTTTGTAGTATGCCAAC 57.529 29.630 0.00 0.00 39.44 3.77
86 87 7.753309 ATTACACTTTTGTAGTATGCCAACA 57.247 32.000 0.00 0.00 39.44 3.33
87 88 7.569639 TTACACTTTTGTAGTATGCCAACAA 57.430 32.000 0.00 0.00 39.44 2.83
88 89 5.827666 ACACTTTTGTAGTATGCCAACAAC 58.172 37.500 0.00 0.00 34.56 3.32
89 90 4.909305 CACTTTTGTAGTATGCCAACAACG 59.091 41.667 0.00 0.00 34.56 4.10
90 91 4.817464 ACTTTTGTAGTATGCCAACAACGA 59.183 37.500 0.00 0.00 34.56 3.85
91 92 5.472137 ACTTTTGTAGTATGCCAACAACGAT 59.528 36.000 0.00 0.00 34.56 3.73
92 93 6.651643 ACTTTTGTAGTATGCCAACAACGATA 59.348 34.615 0.00 0.00 34.56 2.92
93 94 7.173562 ACTTTTGTAGTATGCCAACAACGATAA 59.826 33.333 0.00 0.00 34.56 1.75
94 95 7.618502 TTTGTAGTATGCCAACAACGATAAT 57.381 32.000 0.00 0.00 33.10 1.28
95 96 8.719560 TTTGTAGTATGCCAACAACGATAATA 57.280 30.769 0.00 0.00 33.10 0.98
96 97 7.703298 TGTAGTATGCCAACAACGATAATAC 57.297 36.000 0.00 0.00 0.00 1.89
97 98 7.266400 TGTAGTATGCCAACAACGATAATACA 58.734 34.615 0.00 0.00 32.40 2.29
98 99 7.764901 TGTAGTATGCCAACAACGATAATACAA 59.235 33.333 0.00 0.00 32.09 2.41
99 100 7.246674 AGTATGCCAACAACGATAATACAAG 57.753 36.000 0.00 0.00 0.00 3.16
100 101 7.045416 AGTATGCCAACAACGATAATACAAGA 58.955 34.615 0.00 0.00 0.00 3.02
101 102 5.794687 TGCCAACAACGATAATACAAGAG 57.205 39.130 0.00 0.00 0.00 2.85
102 103 5.242434 TGCCAACAACGATAATACAAGAGT 58.758 37.500 0.00 0.00 0.00 3.24
103 104 5.121611 TGCCAACAACGATAATACAAGAGTG 59.878 40.000 0.00 0.00 0.00 3.51
104 105 5.121768 GCCAACAACGATAATACAAGAGTGT 59.878 40.000 0.00 0.00 42.09 3.55
105 106 6.311935 GCCAACAACGATAATACAAGAGTGTA 59.688 38.462 0.00 0.00 44.29 2.90
106 107 7.148540 GCCAACAACGATAATACAAGAGTGTAA 60.149 37.037 0.00 0.00 43.41 2.41
107 108 8.879759 CCAACAACGATAATACAAGAGTGTAAT 58.120 33.333 0.00 0.00 43.41 1.89
163 164 4.649267 TTTACACTCATCCAACATCCCA 57.351 40.909 0.00 0.00 0.00 4.37
164 165 4.649267 TTACACTCATCCAACATCCCAA 57.351 40.909 0.00 0.00 0.00 4.12
165 166 3.524095 ACACTCATCCAACATCCCAAA 57.476 42.857 0.00 0.00 0.00 3.28
166 167 3.843422 ACACTCATCCAACATCCCAAAA 58.157 40.909 0.00 0.00 0.00 2.44
167 168 4.222336 ACACTCATCCAACATCCCAAAAA 58.778 39.130 0.00 0.00 0.00 1.94
168 169 4.840115 ACACTCATCCAACATCCCAAAAAT 59.160 37.500 0.00 0.00 0.00 1.82
169 170 6.015918 ACACTCATCCAACATCCCAAAAATA 58.984 36.000 0.00 0.00 0.00 1.40
170 171 6.071391 ACACTCATCCAACATCCCAAAAATAC 60.071 38.462 0.00 0.00 0.00 1.89
171 172 5.422012 ACTCATCCAACATCCCAAAAATACC 59.578 40.000 0.00 0.00 0.00 2.73
172 173 5.588845 TCATCCAACATCCCAAAAATACCT 58.411 37.500 0.00 0.00 0.00 3.08
173 174 6.736581 TCATCCAACATCCCAAAAATACCTA 58.263 36.000 0.00 0.00 0.00 3.08
174 175 6.605594 TCATCCAACATCCCAAAAATACCTAC 59.394 38.462 0.00 0.00 0.00 3.18
175 176 5.893500 TCCAACATCCCAAAAATACCTACA 58.106 37.500 0.00 0.00 0.00 2.74
176 177 6.315714 TCCAACATCCCAAAAATACCTACAA 58.684 36.000 0.00 0.00 0.00 2.41
177 178 6.782988 TCCAACATCCCAAAAATACCTACAAA 59.217 34.615 0.00 0.00 0.00 2.83
178 179 7.290248 TCCAACATCCCAAAAATACCTACAAAA 59.710 33.333 0.00 0.00 0.00 2.44
179 180 7.602265 CCAACATCCCAAAAATACCTACAAAAG 59.398 37.037 0.00 0.00 0.00 2.27
180 181 8.364142 CAACATCCCAAAAATACCTACAAAAGA 58.636 33.333 0.00 0.00 0.00 2.52
181 182 8.485578 ACATCCCAAAAATACCTACAAAAGAA 57.514 30.769 0.00 0.00 0.00 2.52
182 183 8.929487 ACATCCCAAAAATACCTACAAAAGAAA 58.071 29.630 0.00 0.00 0.00 2.52
183 184 9.771534 CATCCCAAAAATACCTACAAAAGAAAA 57.228 29.630 0.00 0.00 0.00 2.29
185 186 9.602568 TCCCAAAAATACCTACAAAAGAAAAAC 57.397 29.630 0.00 0.00 0.00 2.43
186 187 8.544597 CCCAAAAATACCTACAAAAGAAAAACG 58.455 33.333 0.00 0.00 0.00 3.60
187 188 9.089601 CCAAAAATACCTACAAAAGAAAAACGT 57.910 29.630 0.00 0.00 0.00 3.99
192 193 9.720667 AATACCTACAAAAGAAAAACGTAACAC 57.279 29.630 0.00 0.00 0.00 3.32
193 194 7.143514 ACCTACAAAAGAAAAACGTAACACA 57.856 32.000 0.00 0.00 0.00 3.72
194 195 7.592051 ACCTACAAAAGAAAAACGTAACACAA 58.408 30.769 0.00 0.00 0.00 3.33
195 196 8.081025 ACCTACAAAAGAAAAACGTAACACAAA 58.919 29.630 0.00 0.00 0.00 2.83
196 197 8.913656 CCTACAAAAGAAAAACGTAACACAAAA 58.086 29.630 0.00 0.00 0.00 2.44
228 229 9.521503 AAGAAAAACAGAAACATAAGAAGAAGC 57.478 29.630 0.00 0.00 0.00 3.86
229 230 8.686334 AGAAAAACAGAAACATAAGAAGAAGCA 58.314 29.630 0.00 0.00 0.00 3.91
230 231 8.634475 AAAAACAGAAACATAAGAAGAAGCAC 57.366 30.769 0.00 0.00 0.00 4.40
231 232 6.942532 AACAGAAACATAAGAAGAAGCACA 57.057 33.333 0.00 0.00 0.00 4.57
232 233 7.516198 AACAGAAACATAAGAAGAAGCACAT 57.484 32.000 0.00 0.00 0.00 3.21
233 234 8.621532 AACAGAAACATAAGAAGAAGCACATA 57.378 30.769 0.00 0.00 0.00 2.29
234 235 8.621532 ACAGAAACATAAGAAGAAGCACATAA 57.378 30.769 0.00 0.00 0.00 1.90
235 236 9.066892 ACAGAAACATAAGAAGAAGCACATAAA 57.933 29.630 0.00 0.00 0.00 1.40
236 237 9.897744 CAGAAACATAAGAAGAAGCACATAAAA 57.102 29.630 0.00 0.00 0.00 1.52
240 241 9.683069 AACATAAGAAGAAGCACATAAAAACAG 57.317 29.630 0.00 0.00 0.00 3.16
241 242 9.066892 ACATAAGAAGAAGCACATAAAAACAGA 57.933 29.630 0.00 0.00 0.00 3.41
242 243 9.897744 CATAAGAAGAAGCACATAAAAACAGAA 57.102 29.630 0.00 0.00 0.00 3.02
245 246 9.651913 AAGAAGAAGCACATAAAAACAGAAAAA 57.348 25.926 0.00 0.00 0.00 1.94
246 247 9.087424 AGAAGAAGCACATAAAAACAGAAAAAC 57.913 29.630 0.00 0.00 0.00 2.43
247 248 8.770438 AAGAAGCACATAAAAACAGAAAAACA 57.230 26.923 0.00 0.00 0.00 2.83
248 249 8.411318 AGAAGCACATAAAAACAGAAAAACAG 57.589 30.769 0.00 0.00 0.00 3.16
249 250 8.250332 AGAAGCACATAAAAACAGAAAAACAGA 58.750 29.630 0.00 0.00 0.00 3.41
250 251 8.770438 AAGCACATAAAAACAGAAAAACAGAA 57.230 26.923 0.00 0.00 0.00 3.02
251 252 8.411318 AGCACATAAAAACAGAAAAACAGAAG 57.589 30.769 0.00 0.00 0.00 2.85
252 253 8.250332 AGCACATAAAAACAGAAAAACAGAAGA 58.750 29.630 0.00 0.00 0.00 2.87
253 254 8.868916 GCACATAAAAACAGAAAAACAGAAGAA 58.131 29.630 0.00 0.00 0.00 2.52
275 276 5.372343 AAAAACAAAAAGAAGGATGGGCT 57.628 34.783 0.00 0.00 0.00 5.19
276 277 4.341366 AAACAAAAAGAAGGATGGGCTG 57.659 40.909 0.00 0.00 0.00 4.85
277 278 2.250924 ACAAAAAGAAGGATGGGCTGG 58.749 47.619 0.00 0.00 0.00 4.85
278 279 1.551883 CAAAAAGAAGGATGGGCTGGG 59.448 52.381 0.00 0.00 0.00 4.45
279 280 0.615827 AAAAGAAGGATGGGCTGGGC 60.616 55.000 0.00 0.00 0.00 5.36
280 281 2.843912 AAAGAAGGATGGGCTGGGCG 62.844 60.000 0.00 0.00 0.00 6.13
281 282 4.883354 GAAGGATGGGCTGGGCGG 62.883 72.222 0.00 0.00 0.00 6.13
283 284 4.815973 AGGATGGGCTGGGCGGTA 62.816 66.667 0.00 0.00 0.00 4.02
284 285 3.570212 GGATGGGCTGGGCGGTAT 61.570 66.667 0.00 0.00 0.00 2.73
285 286 2.221299 GGATGGGCTGGGCGGTATA 61.221 63.158 0.00 0.00 0.00 1.47
286 287 1.296715 GATGGGCTGGGCGGTATAG 59.703 63.158 0.00 0.00 0.00 1.31
287 288 2.185310 GATGGGCTGGGCGGTATAGG 62.185 65.000 0.00 0.00 0.00 2.57
288 289 2.847715 GGGCTGGGCGGTATAGGT 60.848 66.667 0.00 0.00 0.00 3.08
289 290 1.534717 GGGCTGGGCGGTATAGGTA 60.535 63.158 0.00 0.00 0.00 3.08
290 291 1.123246 GGGCTGGGCGGTATAGGTAA 61.123 60.000 0.00 0.00 0.00 2.85
291 292 0.981943 GGCTGGGCGGTATAGGTAAT 59.018 55.000 0.00 0.00 0.00 1.89
292 293 1.338769 GGCTGGGCGGTATAGGTAATG 60.339 57.143 0.00 0.00 0.00 1.90
293 294 1.338769 GCTGGGCGGTATAGGTAATGG 60.339 57.143 0.00 0.00 0.00 3.16
294 295 1.278127 CTGGGCGGTATAGGTAATGGG 59.722 57.143 0.00 0.00 0.00 4.00
295 296 0.035725 GGGCGGTATAGGTAATGGGC 60.036 60.000 0.00 0.00 0.00 5.36
296 297 0.981943 GGCGGTATAGGTAATGGGCT 59.018 55.000 0.00 0.00 0.00 5.19
297 298 1.350019 GGCGGTATAGGTAATGGGCTT 59.650 52.381 0.00 0.00 0.00 4.35
298 299 2.224695 GGCGGTATAGGTAATGGGCTTT 60.225 50.000 0.00 0.00 0.00 3.51
299 300 3.008266 GGCGGTATAGGTAATGGGCTTTA 59.992 47.826 0.00 0.00 0.00 1.85
300 301 4.251268 GCGGTATAGGTAATGGGCTTTAG 58.749 47.826 0.00 0.00 0.00 1.85
301 302 4.251268 CGGTATAGGTAATGGGCTTTAGC 58.749 47.826 0.00 0.00 41.14 3.09
314 315 3.594044 GCTTTAGCCGAGTAGCAAATC 57.406 47.619 0.00 0.00 33.88 2.17
315 316 2.033662 GCTTTAGCCGAGTAGCAAATCG 60.034 50.000 0.00 0.00 38.65 3.34
316 317 3.444916 CTTTAGCCGAGTAGCAAATCGA 58.555 45.455 6.10 0.00 41.40 3.59
317 318 2.486951 TAGCCGAGTAGCAAATCGAC 57.513 50.000 6.10 0.00 41.40 4.20
318 319 0.818296 AGCCGAGTAGCAAATCGACT 59.182 50.000 6.10 0.00 41.40 4.18
319 320 0.924090 GCCGAGTAGCAAATCGACTG 59.076 55.000 6.10 0.00 41.40 3.51
320 321 1.469251 GCCGAGTAGCAAATCGACTGA 60.469 52.381 6.10 0.00 41.40 3.41
321 322 2.186076 CCGAGTAGCAAATCGACTGAC 58.814 52.381 6.10 0.00 41.40 3.51
322 323 2.186076 CGAGTAGCAAATCGACTGACC 58.814 52.381 0.56 0.00 41.40 4.02
323 324 2.541556 GAGTAGCAAATCGACTGACCC 58.458 52.381 0.56 0.00 30.48 4.46
365 366 0.752658 AAAAGCCCAAACCAGCTCAC 59.247 50.000 0.00 0.00 38.74 3.51
455 469 5.528870 ACCCAAATTGAAAATTCAGACGAC 58.471 37.500 0.00 0.00 38.61 4.34
559 573 6.585416 AGAAGTTGCATGTTTTTCCATTCTT 58.415 32.000 0.00 0.00 0.00 2.52
560 574 7.725251 AGAAGTTGCATGTTTTTCCATTCTTA 58.275 30.769 0.00 0.00 0.00 2.10
562 576 7.894376 AGTTGCATGTTTTTCCATTCTTATG 57.106 32.000 0.00 0.00 0.00 1.90
563 577 7.669427 AGTTGCATGTTTTTCCATTCTTATGA 58.331 30.769 0.00 0.00 33.37 2.15
564 578 8.149647 AGTTGCATGTTTTTCCATTCTTATGAA 58.850 29.630 0.00 0.00 33.37 2.57
615 631 2.170607 ACATACATCGGCCAAACTAGCT 59.829 45.455 2.24 0.00 0.00 3.32
616 632 2.309528 TACATCGGCCAAACTAGCTG 57.690 50.000 2.24 0.00 38.00 4.24
752 770 2.598000 AGAAGACGACGACGAAGAAG 57.402 50.000 15.32 0.00 42.66 2.85
754 772 2.547211 AGAAGACGACGACGAAGAAGAA 59.453 45.455 15.32 0.00 42.66 2.52
755 773 3.188873 AGAAGACGACGACGAAGAAGAAT 59.811 43.478 15.32 0.00 42.66 2.40
756 774 4.391216 AGAAGACGACGACGAAGAAGAATA 59.609 41.667 15.32 0.00 42.66 1.75
757 775 4.879104 AGACGACGACGAAGAAGAATAT 57.121 40.909 15.32 0.00 42.66 1.28
863 886 1.633561 CACAGCACCGTCAGATACAG 58.366 55.000 0.00 0.00 0.00 2.74
902 933 1.739466 TCAATACGTTCGACTACGGCT 59.261 47.619 13.69 0.00 45.44 5.52
906 937 2.184385 ACGTTCGACTACGGCTTATG 57.816 50.000 13.69 0.00 45.44 1.90
907 938 1.739466 ACGTTCGACTACGGCTTATGA 59.261 47.619 13.69 0.00 45.44 2.15
908 939 2.162208 ACGTTCGACTACGGCTTATGAA 59.838 45.455 13.69 0.00 45.44 2.57
909 940 2.529090 CGTTCGACTACGGCTTATGAAC 59.471 50.000 1.67 0.00 40.21 3.18
928 980 4.849329 AACGCGGATCCGTCGAGC 62.849 66.667 38.59 22.93 41.16 5.03
1025 1088 2.177451 GCTTAGTACCTCCCTCCCTAGT 59.823 54.545 0.00 0.00 0.00 2.57
1058 1131 2.130395 GCAAGAAGAAGCAAGCAAACC 58.870 47.619 0.00 0.00 0.00 3.27
1158 1245 3.349006 ACTGCCTTTGTCAGCGCG 61.349 61.111 0.00 0.00 35.04 6.86
1580 1705 8.988546 ATTTAATTTAACAAGGGCCAAAGTTT 57.011 26.923 6.18 0.00 0.00 2.66
1591 1716 3.934579 GGGCCAAAGTTTGCTAATGAATG 59.065 43.478 10.25 0.00 0.00 2.67
1626 1787 0.821711 GTACAGGTTGTTGCTGGGCA 60.822 55.000 0.00 0.00 36.47 5.36
1672 1833 1.807226 CTCGTACAGATCGCCACCA 59.193 57.895 0.00 0.00 0.00 4.17
2214 2387 2.163818 TGGACAGCTCTTAAACACCG 57.836 50.000 0.00 0.00 0.00 4.94
2219 2392 2.289257 ACAGCTCTTAAACACCGGTACC 60.289 50.000 6.87 0.16 0.00 3.34
2231 2406 3.018856 CACCGGTACCACTACATCAGTA 58.981 50.000 6.87 0.00 34.98 2.74
2244 2419 2.497675 ACATCAGTAGTCGTTCCATGCT 59.502 45.455 0.00 0.00 0.00 3.79
2245 2420 3.699538 ACATCAGTAGTCGTTCCATGCTA 59.300 43.478 0.00 0.00 0.00 3.49
2248 2423 2.860735 CAGTAGTCGTTCCATGCTAAGC 59.139 50.000 0.00 0.00 0.00 3.09
2611 2854 9.740239 TGAAAACAAACACTACTAGTACTACAG 57.260 33.333 0.00 2.08 0.00 2.74
2612 2855 8.585189 AAAACAAACACTACTAGTACTACAGC 57.415 34.615 0.00 0.00 0.00 4.40
2613 2856 6.889301 ACAAACACTACTAGTACTACAGCA 57.111 37.500 0.00 0.00 0.00 4.41
2614 2857 6.910995 ACAAACACTACTAGTACTACAGCAG 58.089 40.000 0.00 0.00 0.00 4.24
2615 2858 6.489361 ACAAACACTACTAGTACTACAGCAGT 59.511 38.462 0.00 0.00 41.62 4.40
2616 2859 6.497785 AACACTACTAGTACTACAGCAGTG 57.502 41.667 18.58 18.58 38.24 3.66
2617 2860 5.802465 ACACTACTAGTACTACAGCAGTGA 58.198 41.667 23.93 3.67 38.24 3.41
2618 2861 6.416415 ACACTACTAGTACTACAGCAGTGAT 58.584 40.000 23.93 11.45 38.24 3.06
2619 2862 6.539464 ACACTACTAGTACTACAGCAGTGATC 59.461 42.308 23.93 0.00 38.24 2.92
2620 2863 6.539103 CACTACTAGTACTACAGCAGTGATCA 59.461 42.308 16.44 0.00 38.24 2.92
2621 2864 6.764085 ACTACTAGTACTACAGCAGTGATCAG 59.236 42.308 0.00 0.00 38.24 2.90
2622 2865 5.502079 ACTAGTACTACAGCAGTGATCAGT 58.498 41.667 0.00 0.00 38.24 3.41
2623 2866 4.710423 AGTACTACAGCAGTGATCAGTG 57.290 45.455 23.75 23.75 38.24 3.66
2631 2874 2.257974 CAGTGATCAGTGCATGCAAC 57.742 50.000 24.58 15.93 0.00 4.17
2632 2875 1.538075 CAGTGATCAGTGCATGCAACA 59.462 47.619 24.58 14.33 0.00 3.33
2633 2876 2.163613 CAGTGATCAGTGCATGCAACAT 59.836 45.455 24.58 14.34 0.00 2.71
2634 2877 2.422479 AGTGATCAGTGCATGCAACATC 59.578 45.455 24.58 21.91 0.00 3.06
2635 2878 1.399089 TGATCAGTGCATGCAACATCG 59.601 47.619 24.58 9.26 0.00 3.84
2636 2879 1.667212 GATCAGTGCATGCAACATCGA 59.333 47.619 24.58 14.42 0.00 3.59
2637 2880 1.081094 TCAGTGCATGCAACATCGAG 58.919 50.000 24.58 8.41 0.00 4.04
2638 2881 0.522705 CAGTGCATGCAACATCGAGC 60.523 55.000 24.58 7.30 0.00 5.03
2639 2882 0.956902 AGTGCATGCAACATCGAGCA 60.957 50.000 24.58 0.00 45.92 4.26
2643 2886 4.720127 TGCAACATCGAGCATGGT 57.280 50.000 0.00 0.00 36.72 3.55
2644 2887 2.945510 TGCAACATCGAGCATGGTT 58.054 47.368 0.00 0.00 36.72 3.67
2645 2888 1.246649 TGCAACATCGAGCATGGTTT 58.753 45.000 0.00 0.00 36.72 3.27
2646 2889 2.431454 TGCAACATCGAGCATGGTTTA 58.569 42.857 0.00 0.00 36.72 2.01
2647 2890 3.016031 TGCAACATCGAGCATGGTTTAT 58.984 40.909 0.00 0.00 36.72 1.40
2648 2891 3.181498 TGCAACATCGAGCATGGTTTATG 60.181 43.478 15.09 15.09 36.72 1.90
2649 2892 3.065233 GCAACATCGAGCATGGTTTATGA 59.935 43.478 20.68 9.14 39.21 2.15
2650 2893 4.787563 GCAACATCGAGCATGGTTTATGAG 60.788 45.833 20.68 14.98 39.21 2.90
2651 2894 2.874701 ACATCGAGCATGGTTTATGAGC 59.125 45.455 20.68 0.00 39.21 4.26
2652 2895 2.988010 TCGAGCATGGTTTATGAGCT 57.012 45.000 0.00 0.00 39.21 4.09
2653 2896 4.202253 ACATCGAGCATGGTTTATGAGCTA 60.202 41.667 20.68 0.00 39.21 3.32
2654 2897 3.982475 TCGAGCATGGTTTATGAGCTAG 58.018 45.455 0.00 0.00 39.21 3.42
2655 2898 2.478134 CGAGCATGGTTTATGAGCTAGC 59.522 50.000 6.62 6.62 39.21 3.42
2656 2899 3.737850 GAGCATGGTTTATGAGCTAGCT 58.262 45.455 19.45 19.45 39.21 3.32
2657 2900 4.559502 CGAGCATGGTTTATGAGCTAGCTA 60.560 45.833 19.38 6.79 39.21 3.32
2658 2901 5.296151 AGCATGGTTTATGAGCTAGCTAA 57.704 39.130 19.38 11.69 39.21 3.09
2659 2902 5.059833 AGCATGGTTTATGAGCTAGCTAAC 58.940 41.667 19.38 17.63 39.21 2.34
2660 2903 4.084328 GCATGGTTTATGAGCTAGCTAACG 60.084 45.833 19.38 7.11 39.21 3.18
2661 2904 4.994907 TGGTTTATGAGCTAGCTAACGA 57.005 40.909 19.38 12.69 0.00 3.85
2662 2905 5.531122 TGGTTTATGAGCTAGCTAACGAT 57.469 39.130 19.38 9.95 0.00 3.73
2663 2906 5.289595 TGGTTTATGAGCTAGCTAACGATG 58.710 41.667 19.38 0.00 0.00 3.84
2664 2907 5.068591 TGGTTTATGAGCTAGCTAACGATGA 59.931 40.000 19.38 1.73 0.00 2.92
2665 2908 6.159988 GGTTTATGAGCTAGCTAACGATGAT 58.840 40.000 19.38 0.00 0.00 2.45
2666 2909 7.039993 TGGTTTATGAGCTAGCTAACGATGATA 60.040 37.037 19.38 0.00 0.00 2.15
2667 2910 7.976734 GGTTTATGAGCTAGCTAACGATGATAT 59.023 37.037 19.38 0.00 0.00 1.63
2873 3190 1.476845 TTGGGCCGAGTCTGTTGCTA 61.477 55.000 0.00 0.00 0.00 3.49
2996 3553 5.066634 TGCTGGTCGTTAGTTTTCATTTTGA 59.933 36.000 0.00 0.00 0.00 2.69
2999 3556 5.823570 TGGTCGTTAGTTTTCATTTTGAGGA 59.176 36.000 0.00 0.00 0.00 3.71
3236 6367 1.200519 ACTAGGGTGTGTGTGTGTGT 58.799 50.000 0.00 0.00 0.00 3.72
3237 6368 1.134521 ACTAGGGTGTGTGTGTGTGTG 60.135 52.381 0.00 0.00 0.00 3.82
3238 6369 0.906066 TAGGGTGTGTGTGTGTGTGT 59.094 50.000 0.00 0.00 0.00 3.72
3239 6370 0.676466 AGGGTGTGTGTGTGTGTGTG 60.676 55.000 0.00 0.00 0.00 3.82
3240 6371 0.958382 GGGTGTGTGTGTGTGTGTGT 60.958 55.000 0.00 0.00 0.00 3.72
3241 6372 0.167908 GGTGTGTGTGTGTGTGTGTG 59.832 55.000 0.00 0.00 0.00 3.82
3242 6373 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
3243 6374 1.265635 GTGTGTGTGTGTGTGTGTGTT 59.734 47.619 0.00 0.00 0.00 3.32
3244 6375 1.950216 TGTGTGTGTGTGTGTGTGTTT 59.050 42.857 0.00 0.00 0.00 2.83
3245 6376 2.287248 TGTGTGTGTGTGTGTGTGTTTG 60.287 45.455 0.00 0.00 0.00 2.93
3286 6421 1.341080 CCCCCAGTTGCAAATTCACT 58.659 50.000 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 8.424731 GTGTAATTTTAGTGCAAAGTTATGTGC 58.575 33.333 0.00 0.00 41.29 4.57
43 44 9.677567 AGTGTAATTTTAGTGCAAAGTTATGTG 57.322 29.630 0.00 0.00 32.79 3.21
48 49 9.430623 ACAAAAGTGTAATTTTAGTGCAAAGTT 57.569 25.926 0.00 0.00 35.72 2.66
49 50 8.996024 ACAAAAGTGTAATTTTAGTGCAAAGT 57.004 26.923 0.00 0.00 35.72 2.66
59 60 9.471084 GTTGGCATACTACAAAAGTGTAATTTT 57.529 29.630 0.00 0.00 39.75 1.82
60 61 8.634444 TGTTGGCATACTACAAAAGTGTAATTT 58.366 29.630 0.00 0.00 39.75 1.82
61 62 8.172352 TGTTGGCATACTACAAAAGTGTAATT 57.828 30.769 0.00 0.00 39.75 1.40
62 63 7.753309 TGTTGGCATACTACAAAAGTGTAAT 57.247 32.000 0.00 0.00 39.75 1.89
63 64 7.419204 GTTGTTGGCATACTACAAAAGTGTAA 58.581 34.615 4.18 0.00 44.26 2.41
64 65 6.292973 CGTTGTTGGCATACTACAAAAGTGTA 60.293 38.462 4.18 0.00 44.26 2.90
65 66 5.504994 CGTTGTTGGCATACTACAAAAGTGT 60.505 40.000 4.18 0.00 44.26 3.55
66 67 4.909305 CGTTGTTGGCATACTACAAAAGTG 59.091 41.667 4.18 0.00 44.26 3.16
67 68 4.817464 TCGTTGTTGGCATACTACAAAAGT 59.183 37.500 4.18 0.00 44.26 2.66
68 69 5.351233 TCGTTGTTGGCATACTACAAAAG 57.649 39.130 4.18 3.00 44.26 2.27
69 70 5.950758 ATCGTTGTTGGCATACTACAAAA 57.049 34.783 4.18 0.00 44.26 2.44
70 71 7.618502 ATTATCGTTGTTGGCATACTACAAA 57.381 32.000 4.18 0.00 44.26 2.83
71 72 7.764901 TGTATTATCGTTGTTGGCATACTACAA 59.235 33.333 0.00 0.00 41.39 2.41
72 73 7.266400 TGTATTATCGTTGTTGGCATACTACA 58.734 34.615 11.99 1.50 33.01 2.74
73 74 7.703298 TGTATTATCGTTGTTGGCATACTAC 57.297 36.000 0.00 0.00 0.00 2.73
74 75 8.198778 TCTTGTATTATCGTTGTTGGCATACTA 58.801 33.333 0.00 0.00 0.00 1.82
75 76 7.045416 TCTTGTATTATCGTTGTTGGCATACT 58.955 34.615 0.00 0.00 0.00 2.12
76 77 7.011109 ACTCTTGTATTATCGTTGTTGGCATAC 59.989 37.037 0.00 0.00 0.00 2.39
77 78 7.011016 CACTCTTGTATTATCGTTGTTGGCATA 59.989 37.037 0.00 0.00 0.00 3.14
78 79 5.880332 ACTCTTGTATTATCGTTGTTGGCAT 59.120 36.000 0.00 0.00 0.00 4.40
79 80 5.121611 CACTCTTGTATTATCGTTGTTGGCA 59.878 40.000 0.00 0.00 0.00 4.92
80 81 5.121768 ACACTCTTGTATTATCGTTGTTGGC 59.878 40.000 0.00 0.00 32.60 4.52
81 82 6.721571 ACACTCTTGTATTATCGTTGTTGG 57.278 37.500 0.00 0.00 32.60 3.77
137 138 8.668653 TGGGATGTTGGATGAGTGTAAATATAT 58.331 33.333 0.00 0.00 0.00 0.86
138 139 8.040002 TGGGATGTTGGATGAGTGTAAATATA 57.960 34.615 0.00 0.00 0.00 0.86
139 140 6.910191 TGGGATGTTGGATGAGTGTAAATAT 58.090 36.000 0.00 0.00 0.00 1.28
140 141 6.320434 TGGGATGTTGGATGAGTGTAAATA 57.680 37.500 0.00 0.00 0.00 1.40
141 142 5.191727 TGGGATGTTGGATGAGTGTAAAT 57.808 39.130 0.00 0.00 0.00 1.40
142 143 4.649267 TGGGATGTTGGATGAGTGTAAA 57.351 40.909 0.00 0.00 0.00 2.01
143 144 4.649267 TTGGGATGTTGGATGAGTGTAA 57.351 40.909 0.00 0.00 0.00 2.41
144 145 4.649267 TTTGGGATGTTGGATGAGTGTA 57.351 40.909 0.00 0.00 0.00 2.90
145 146 3.524095 TTTGGGATGTTGGATGAGTGT 57.476 42.857 0.00 0.00 0.00 3.55
146 147 4.870123 TTTTTGGGATGTTGGATGAGTG 57.130 40.909 0.00 0.00 0.00 3.51
147 148 5.422012 GGTATTTTTGGGATGTTGGATGAGT 59.578 40.000 0.00 0.00 0.00 3.41
148 149 5.658190 AGGTATTTTTGGGATGTTGGATGAG 59.342 40.000 0.00 0.00 0.00 2.90
149 150 5.588845 AGGTATTTTTGGGATGTTGGATGA 58.411 37.500 0.00 0.00 0.00 2.92
150 151 5.937975 AGGTATTTTTGGGATGTTGGATG 57.062 39.130 0.00 0.00 0.00 3.51
151 152 6.498538 TGTAGGTATTTTTGGGATGTTGGAT 58.501 36.000 0.00 0.00 0.00 3.41
152 153 5.893500 TGTAGGTATTTTTGGGATGTTGGA 58.106 37.500 0.00 0.00 0.00 3.53
153 154 6.597832 TTGTAGGTATTTTTGGGATGTTGG 57.402 37.500 0.00 0.00 0.00 3.77
154 155 8.364142 TCTTTTGTAGGTATTTTTGGGATGTTG 58.636 33.333 0.00 0.00 0.00 3.33
155 156 8.485578 TCTTTTGTAGGTATTTTTGGGATGTT 57.514 30.769 0.00 0.00 0.00 2.71
156 157 8.485578 TTCTTTTGTAGGTATTTTTGGGATGT 57.514 30.769 0.00 0.00 0.00 3.06
157 158 9.771534 TTTTCTTTTGTAGGTATTTTTGGGATG 57.228 29.630 0.00 0.00 0.00 3.51
159 160 9.602568 GTTTTTCTTTTGTAGGTATTTTTGGGA 57.397 29.630 0.00 0.00 0.00 4.37
160 161 8.544597 CGTTTTTCTTTTGTAGGTATTTTTGGG 58.455 33.333 0.00 0.00 0.00 4.12
161 162 9.089601 ACGTTTTTCTTTTGTAGGTATTTTTGG 57.910 29.630 0.00 0.00 0.00 3.28
166 167 9.720667 GTGTTACGTTTTTCTTTTGTAGGTATT 57.279 29.630 0.00 0.00 0.00 1.89
167 168 8.891720 TGTGTTACGTTTTTCTTTTGTAGGTAT 58.108 29.630 0.00 0.00 0.00 2.73
168 169 8.261492 TGTGTTACGTTTTTCTTTTGTAGGTA 57.739 30.769 0.00 0.00 0.00 3.08
169 170 7.143514 TGTGTTACGTTTTTCTTTTGTAGGT 57.856 32.000 0.00 0.00 0.00 3.08
170 171 8.450385 TTTGTGTTACGTTTTTCTTTTGTAGG 57.550 30.769 0.00 0.00 0.00 3.18
202 203 9.521503 GCTTCTTCTTATGTTTCTGTTTTTCTT 57.478 29.630 0.00 0.00 0.00 2.52
203 204 8.686334 TGCTTCTTCTTATGTTTCTGTTTTTCT 58.314 29.630 0.00 0.00 0.00 2.52
204 205 8.746751 GTGCTTCTTCTTATGTTTCTGTTTTTC 58.253 33.333 0.00 0.00 0.00 2.29
205 206 8.250332 TGTGCTTCTTCTTATGTTTCTGTTTTT 58.750 29.630 0.00 0.00 0.00 1.94
206 207 7.771183 TGTGCTTCTTCTTATGTTTCTGTTTT 58.229 30.769 0.00 0.00 0.00 2.43
207 208 7.333528 TGTGCTTCTTCTTATGTTTCTGTTT 57.666 32.000 0.00 0.00 0.00 2.83
208 209 6.942532 TGTGCTTCTTCTTATGTTTCTGTT 57.057 33.333 0.00 0.00 0.00 3.16
209 210 8.621532 TTATGTGCTTCTTCTTATGTTTCTGT 57.378 30.769 0.00 0.00 0.00 3.41
210 211 9.897744 TTTTATGTGCTTCTTCTTATGTTTCTG 57.102 29.630 0.00 0.00 0.00 3.02
214 215 9.683069 CTGTTTTTATGTGCTTCTTCTTATGTT 57.317 29.630 0.00 0.00 0.00 2.71
215 216 9.066892 TCTGTTTTTATGTGCTTCTTCTTATGT 57.933 29.630 0.00 0.00 0.00 2.29
216 217 9.897744 TTCTGTTTTTATGTGCTTCTTCTTATG 57.102 29.630 0.00 0.00 0.00 1.90
219 220 9.651913 TTTTTCTGTTTTTATGTGCTTCTTCTT 57.348 25.926 0.00 0.00 0.00 2.52
220 221 9.087424 GTTTTTCTGTTTTTATGTGCTTCTTCT 57.913 29.630 0.00 0.00 0.00 2.85
221 222 8.868916 TGTTTTTCTGTTTTTATGTGCTTCTTC 58.131 29.630 0.00 0.00 0.00 2.87
222 223 8.770438 TGTTTTTCTGTTTTTATGTGCTTCTT 57.230 26.923 0.00 0.00 0.00 2.52
223 224 8.250332 TCTGTTTTTCTGTTTTTATGTGCTTCT 58.750 29.630 0.00 0.00 0.00 2.85
224 225 8.406172 TCTGTTTTTCTGTTTTTATGTGCTTC 57.594 30.769 0.00 0.00 0.00 3.86
225 226 8.770438 TTCTGTTTTTCTGTTTTTATGTGCTT 57.230 26.923 0.00 0.00 0.00 3.91
226 227 8.250332 TCTTCTGTTTTTCTGTTTTTATGTGCT 58.750 29.630 0.00 0.00 0.00 4.40
227 228 8.406172 TCTTCTGTTTTTCTGTTTTTATGTGC 57.594 30.769 0.00 0.00 0.00 4.57
253 254 5.125356 CAGCCCATCCTTCTTTTTGTTTTT 58.875 37.500 0.00 0.00 0.00 1.94
254 255 4.444733 CCAGCCCATCCTTCTTTTTGTTTT 60.445 41.667 0.00 0.00 0.00 2.43
255 256 3.071457 CCAGCCCATCCTTCTTTTTGTTT 59.929 43.478 0.00 0.00 0.00 2.83
256 257 2.634453 CCAGCCCATCCTTCTTTTTGTT 59.366 45.455 0.00 0.00 0.00 2.83
257 258 2.250924 CCAGCCCATCCTTCTTTTTGT 58.749 47.619 0.00 0.00 0.00 2.83
258 259 1.551883 CCCAGCCCATCCTTCTTTTTG 59.448 52.381 0.00 0.00 0.00 2.44
259 260 1.942776 CCCAGCCCATCCTTCTTTTT 58.057 50.000 0.00 0.00 0.00 1.94
260 261 0.615827 GCCCAGCCCATCCTTCTTTT 60.616 55.000 0.00 0.00 0.00 2.27
261 262 1.000866 GCCCAGCCCATCCTTCTTT 59.999 57.895 0.00 0.00 0.00 2.52
262 263 2.685999 GCCCAGCCCATCCTTCTT 59.314 61.111 0.00 0.00 0.00 2.52
263 264 3.801997 CGCCCAGCCCATCCTTCT 61.802 66.667 0.00 0.00 0.00 2.85
264 265 4.883354 CCGCCCAGCCCATCCTTC 62.883 72.222 0.00 0.00 0.00 3.46
266 267 2.689573 TATACCGCCCAGCCCATCCT 62.690 60.000 0.00 0.00 0.00 3.24
267 268 2.185310 CTATACCGCCCAGCCCATCC 62.185 65.000 0.00 0.00 0.00 3.51
268 269 1.296715 CTATACCGCCCAGCCCATC 59.703 63.158 0.00 0.00 0.00 3.51
269 270 2.224159 CCTATACCGCCCAGCCCAT 61.224 63.158 0.00 0.00 0.00 4.00
270 271 2.315161 TACCTATACCGCCCAGCCCA 62.315 60.000 0.00 0.00 0.00 5.36
271 272 1.123246 TTACCTATACCGCCCAGCCC 61.123 60.000 0.00 0.00 0.00 5.19
272 273 0.981943 ATTACCTATACCGCCCAGCC 59.018 55.000 0.00 0.00 0.00 4.85
273 274 1.338769 CCATTACCTATACCGCCCAGC 60.339 57.143 0.00 0.00 0.00 4.85
274 275 1.278127 CCCATTACCTATACCGCCCAG 59.722 57.143 0.00 0.00 0.00 4.45
275 276 1.354101 CCCATTACCTATACCGCCCA 58.646 55.000 0.00 0.00 0.00 5.36
276 277 0.035725 GCCCATTACCTATACCGCCC 60.036 60.000 0.00 0.00 0.00 6.13
277 278 0.981943 AGCCCATTACCTATACCGCC 59.018 55.000 0.00 0.00 0.00 6.13
278 279 2.853235 AAGCCCATTACCTATACCGC 57.147 50.000 0.00 0.00 0.00 5.68
279 280 4.251268 GCTAAAGCCCATTACCTATACCG 58.749 47.826 0.00 0.00 34.31 4.02
294 295 2.033662 CGATTTGCTACTCGGCTAAAGC 60.034 50.000 0.12 0.00 41.14 3.51
295 296 3.243177 GTCGATTTGCTACTCGGCTAAAG 59.757 47.826 5.35 0.00 36.61 1.85
296 297 3.119245 AGTCGATTTGCTACTCGGCTAAA 60.119 43.478 12.77 0.00 46.99 1.85
297 298 2.426024 AGTCGATTTGCTACTCGGCTAA 59.574 45.455 12.77 0.00 46.99 3.09
298 299 2.022195 AGTCGATTTGCTACTCGGCTA 58.978 47.619 12.77 0.00 46.99 3.93
299 300 0.818296 AGTCGATTTGCTACTCGGCT 59.182 50.000 9.04 9.04 44.36 5.52
300 301 0.924090 CAGTCGATTTGCTACTCGGC 59.076 55.000 4.46 4.46 39.68 5.54
301 302 2.186076 GTCAGTCGATTTGCTACTCGG 58.814 52.381 7.92 0.00 35.64 4.63
302 303 2.186076 GGTCAGTCGATTTGCTACTCG 58.814 52.381 1.64 1.64 36.25 4.18
303 304 2.094182 TGGGTCAGTCGATTTGCTACTC 60.094 50.000 0.00 0.00 0.00 2.59
304 305 1.899814 TGGGTCAGTCGATTTGCTACT 59.100 47.619 0.00 0.00 0.00 2.57
305 306 2.380084 TGGGTCAGTCGATTTGCTAC 57.620 50.000 0.00 0.00 0.00 3.58
306 307 3.410631 TTTGGGTCAGTCGATTTGCTA 57.589 42.857 0.00 0.00 0.00 3.49
307 308 2.270352 TTTGGGTCAGTCGATTTGCT 57.730 45.000 0.00 0.00 0.00 3.91
308 309 4.096382 ACATATTTGGGTCAGTCGATTTGC 59.904 41.667 0.00 0.00 0.00 3.68
309 310 5.449041 CCACATATTTGGGTCAGTCGATTTG 60.449 44.000 0.00 0.00 32.35 2.32
310 311 4.640201 CCACATATTTGGGTCAGTCGATTT 59.360 41.667 0.00 0.00 32.35 2.17
311 312 4.199310 CCACATATTTGGGTCAGTCGATT 58.801 43.478 0.00 0.00 32.35 3.34
312 313 3.808728 CCACATATTTGGGTCAGTCGAT 58.191 45.455 0.00 0.00 32.35 3.59
313 314 2.679639 GCCACATATTTGGGTCAGTCGA 60.680 50.000 9.92 0.00 37.10 4.20
314 315 1.670811 GCCACATATTTGGGTCAGTCG 59.329 52.381 9.92 0.00 37.10 4.18
315 316 2.024414 GGCCACATATTTGGGTCAGTC 58.976 52.381 9.92 0.00 37.10 3.51
316 317 1.357420 TGGCCACATATTTGGGTCAGT 59.643 47.619 0.00 0.00 37.10 3.41
317 318 2.026641 CTGGCCACATATTTGGGTCAG 58.973 52.381 0.00 7.09 46.73 3.51
318 319 1.357420 ACTGGCCACATATTTGGGTCA 59.643 47.619 0.00 1.01 37.10 4.02
319 320 2.024414 GACTGGCCACATATTTGGGTC 58.976 52.381 0.00 0.00 37.10 4.46
320 321 1.357420 TGACTGGCCACATATTTGGGT 59.643 47.619 0.00 0.00 37.10 4.51
321 322 2.142356 TGACTGGCCACATATTTGGG 57.858 50.000 0.00 0.00 37.10 4.12
322 323 4.533919 TTTTGACTGGCCACATATTTGG 57.466 40.909 0.00 3.33 39.98 3.28
386 387 4.492494 TCCTGCTCTGAAATTCATGCTA 57.508 40.909 17.28 7.42 30.64 3.49
559 573 5.530171 GCATGCTCCTCTCATTTTCTTCATA 59.470 40.000 11.37 0.00 0.00 2.15
560 574 4.338682 GCATGCTCCTCTCATTTTCTTCAT 59.661 41.667 11.37 0.00 0.00 2.57
562 576 3.693085 TGCATGCTCCTCTCATTTTCTTC 59.307 43.478 20.33 0.00 0.00 2.87
563 577 3.693807 TGCATGCTCCTCTCATTTTCTT 58.306 40.909 20.33 0.00 0.00 2.52
564 578 3.361281 TGCATGCTCCTCTCATTTTCT 57.639 42.857 20.33 0.00 0.00 2.52
615 631 2.238395 TCCACTGGCACAAGCATATACA 59.762 45.455 0.00 0.00 44.61 2.29
616 632 2.614057 GTCCACTGGCACAAGCATATAC 59.386 50.000 0.00 0.00 44.61 1.47
660 676 1.175347 ACACGCACAGAGAGAGCTGA 61.175 55.000 0.00 0.00 39.20 4.26
716 734 5.167845 GTCTTCTTCTGCTTCTTCGAAGAT 58.832 41.667 27.51 0.00 41.73 2.40
752 770 3.181514 GCTCTCGTCTCTCGCCTATATTC 60.182 52.174 0.00 0.00 39.67 1.75
754 772 2.352388 GCTCTCGTCTCTCGCCTATAT 58.648 52.381 0.00 0.00 39.67 0.86
755 773 1.798283 GCTCTCGTCTCTCGCCTATA 58.202 55.000 0.00 0.00 39.67 1.31
756 774 1.225376 CGCTCTCGTCTCTCGCCTAT 61.225 60.000 0.00 0.00 39.67 2.57
757 775 1.883544 CGCTCTCGTCTCTCGCCTA 60.884 63.158 0.00 0.00 39.67 3.93
863 886 1.139853 GACTGGGAGTCCATGGATGTC 59.860 57.143 19.62 17.21 43.11 3.06
902 933 1.563111 GGATCCGCGTTCGTTCATAA 58.437 50.000 4.92 0.00 0.00 1.90
906 937 2.502965 GACGGATCCGCGTTCGTTC 61.503 63.158 33.62 17.77 44.19 3.95
907 938 2.505557 GACGGATCCGCGTTCGTT 60.506 61.111 33.62 12.81 44.19 3.85
908 939 4.824166 CGACGGATCCGCGTTCGT 62.824 66.667 33.62 13.63 44.19 3.85
909 940 4.525576 TCGACGGATCCGCGTTCG 62.526 66.667 33.73 31.79 44.19 3.95
945 997 2.703409 CGTACATGGCGAGCAAGC 59.297 61.111 6.13 0.00 0.00 4.01
959 1016 3.665409 GCTTCTATTTATACACGCGCGTA 59.335 43.478 37.24 22.76 0.00 4.42
960 1017 2.470257 GCTTCTATTTATACACGCGCGT 59.530 45.455 32.73 32.73 0.00 6.01
1025 1088 1.460743 CTTCTTGCGATGCTTCACGAA 59.539 47.619 0.08 0.00 0.00 3.85
1058 1131 1.835483 CGGCGCCATTTAGCTAGCTG 61.835 60.000 28.98 11.11 0.00 4.24
1313 1400 1.303074 AGCCCGAGAGTGTACGTCA 60.303 57.895 0.00 0.00 0.00 4.35
1591 1716 6.529463 ACCTGTACGTGTGTAAACATTTAC 57.471 37.500 0.00 7.44 42.51 2.01
1650 1811 2.491022 GGCGATCTGTACGAGCCCT 61.491 63.158 0.00 0.00 41.81 5.19
1672 1833 1.911357 TGACATGGAGATGAGGTTGCT 59.089 47.619 0.00 0.00 33.36 3.91
1721 1882 1.221840 CTATCGCAGTTGCTGGGGT 59.778 57.895 12.16 8.46 43.27 4.95
1886 2056 3.047877 CGCCGTTCAGGTTCACCC 61.048 66.667 0.00 0.00 43.70 4.61
2231 2406 2.479730 CGTAGCTTAGCATGGAACGACT 60.480 50.000 7.07 0.00 0.00 4.18
2233 2408 1.475280 ACGTAGCTTAGCATGGAACGA 59.525 47.619 17.58 0.00 33.40 3.85
2234 2409 1.922570 ACGTAGCTTAGCATGGAACG 58.077 50.000 7.07 10.24 35.17 3.95
2235 2410 3.777478 TGTACGTAGCTTAGCATGGAAC 58.223 45.455 7.07 0.00 0.00 3.62
2236 2411 4.459390 TTGTACGTAGCTTAGCATGGAA 57.541 40.909 7.07 0.00 0.00 3.53
2237 2412 4.665833 ATTGTACGTAGCTTAGCATGGA 57.334 40.909 7.07 0.00 0.00 3.41
2238 2413 4.684703 GGTATTGTACGTAGCTTAGCATGG 59.315 45.833 7.07 0.00 0.00 3.66
2239 2414 4.381863 CGGTATTGTACGTAGCTTAGCATG 59.618 45.833 7.07 0.74 0.00 4.06
2240 2415 4.037208 ACGGTATTGTACGTAGCTTAGCAT 59.963 41.667 7.07 0.00 42.15 3.79
2241 2416 3.378112 ACGGTATTGTACGTAGCTTAGCA 59.622 43.478 7.07 0.00 42.15 3.49
2242 2417 3.957468 ACGGTATTGTACGTAGCTTAGC 58.043 45.455 0.00 0.00 42.15 3.09
2245 2420 8.400947 CCATATATACGGTATTGTACGTAGCTT 58.599 37.037 5.89 0.59 46.95 3.74
2585 2828 9.740239 CTGTAGTACTAGTAGTGTTTGTTTTCA 57.260 33.333 18.75 5.04 0.00 2.69
2586 2829 8.697960 GCTGTAGTACTAGTAGTGTTTGTTTTC 58.302 37.037 18.75 0.00 0.00 2.29
2587 2830 8.199449 TGCTGTAGTACTAGTAGTGTTTGTTTT 58.801 33.333 18.75 0.00 0.00 2.43
2588 2831 7.719483 TGCTGTAGTACTAGTAGTGTTTGTTT 58.281 34.615 18.75 0.00 0.00 2.83
2589 2832 7.014038 ACTGCTGTAGTACTAGTAGTGTTTGTT 59.986 37.037 18.75 0.00 38.24 2.83
2590 2833 6.489361 ACTGCTGTAGTACTAGTAGTGTTTGT 59.511 38.462 18.75 8.25 38.24 2.83
2591 2834 6.802348 CACTGCTGTAGTACTAGTAGTGTTTG 59.198 42.308 24.66 9.05 46.12 2.93
2592 2835 6.910995 CACTGCTGTAGTACTAGTAGTGTTT 58.089 40.000 24.66 1.18 46.12 2.83
2593 2836 6.497785 CACTGCTGTAGTACTAGTAGTGTT 57.502 41.667 24.66 3.60 46.12 3.32
2596 2839 6.651086 TGATCACTGCTGTAGTACTAGTAGT 58.349 40.000 14.57 14.57 39.89 2.73
2597 2840 6.764085 ACTGATCACTGCTGTAGTACTAGTAG 59.236 42.308 1.87 6.04 37.60 2.57
2598 2841 6.539103 CACTGATCACTGCTGTAGTACTAGTA 59.461 42.308 1.87 0.00 37.60 1.82
2599 2842 5.355630 CACTGATCACTGCTGTAGTACTAGT 59.644 44.000 1.87 0.00 37.60 2.57
2600 2843 5.731967 GCACTGATCACTGCTGTAGTACTAG 60.732 48.000 17.17 0.00 37.60 2.57
2601 2844 4.096532 GCACTGATCACTGCTGTAGTACTA 59.903 45.833 17.17 0.00 37.60 1.82
2602 2845 3.119316 GCACTGATCACTGCTGTAGTACT 60.119 47.826 17.17 0.00 37.60 2.73
2603 2846 3.182967 GCACTGATCACTGCTGTAGTAC 58.817 50.000 17.17 0.00 37.60 2.73
2604 2847 2.825532 TGCACTGATCACTGCTGTAGTA 59.174 45.455 22.61 4.38 37.60 1.82
2605 2848 1.620323 TGCACTGATCACTGCTGTAGT 59.380 47.619 22.61 2.07 41.36 2.73
2606 2849 2.375173 TGCACTGATCACTGCTGTAG 57.625 50.000 22.61 1.48 34.29 2.74
2607 2850 2.624636 CATGCACTGATCACTGCTGTA 58.375 47.619 22.61 8.15 34.29 2.74
2608 2851 1.450025 CATGCACTGATCACTGCTGT 58.550 50.000 22.61 12.19 34.29 4.40
2609 2852 0.098905 GCATGCACTGATCACTGCTG 59.901 55.000 22.61 18.70 34.29 4.41
2610 2853 0.322187 TGCATGCACTGATCACTGCT 60.322 50.000 18.46 9.90 34.29 4.24
2611 2854 0.524414 TTGCATGCACTGATCACTGC 59.476 50.000 22.58 17.49 0.00 4.40
2612 2855 1.538075 TGTTGCATGCACTGATCACTG 59.462 47.619 22.58 0.00 0.00 3.66
2613 2856 1.900245 TGTTGCATGCACTGATCACT 58.100 45.000 22.58 0.00 0.00 3.41
2614 2857 2.790123 CGATGTTGCATGCACTGATCAC 60.790 50.000 22.58 15.43 0.00 3.06
2615 2858 1.399089 CGATGTTGCATGCACTGATCA 59.601 47.619 22.58 14.49 0.00 2.92
2616 2859 1.667212 TCGATGTTGCATGCACTGATC 59.333 47.619 22.58 19.16 0.00 2.92
2617 2860 1.669265 CTCGATGTTGCATGCACTGAT 59.331 47.619 22.58 12.43 0.00 2.90
2618 2861 1.081094 CTCGATGTTGCATGCACTGA 58.919 50.000 22.58 12.53 0.00 3.41
2619 2862 0.522705 GCTCGATGTTGCATGCACTG 60.523 55.000 22.58 8.63 0.00 3.66
2620 2863 0.956902 TGCTCGATGTTGCATGCACT 60.957 50.000 22.58 8.21 33.94 4.40
2621 2864 0.099968 ATGCTCGATGTTGCATGCAC 59.900 50.000 22.58 16.00 46.58 4.57
2622 2865 2.484558 ATGCTCGATGTTGCATGCA 58.515 47.368 18.46 18.46 46.58 3.96
2626 2869 1.246649 AAACCATGCTCGATGTTGCA 58.753 45.000 0.00 0.00 43.67 4.08
2627 2870 3.065233 TCATAAACCATGCTCGATGTTGC 59.935 43.478 0.00 0.00 34.35 4.17
2628 2871 4.787563 GCTCATAAACCATGCTCGATGTTG 60.788 45.833 0.00 0.00 34.35 3.33
2629 2872 3.313526 GCTCATAAACCATGCTCGATGTT 59.686 43.478 0.00 0.00 34.35 2.71
2630 2873 2.874701 GCTCATAAACCATGCTCGATGT 59.125 45.455 0.00 0.00 34.35 3.06
2631 2874 3.136763 AGCTCATAAACCATGCTCGATG 58.863 45.455 0.00 0.00 34.35 3.84
2632 2875 3.482156 AGCTCATAAACCATGCTCGAT 57.518 42.857 0.00 0.00 34.35 3.59
2633 2876 2.988010 AGCTCATAAACCATGCTCGA 57.012 45.000 0.00 0.00 34.35 4.04
2634 2877 2.478134 GCTAGCTCATAAACCATGCTCG 59.522 50.000 7.70 0.00 35.47 5.03
2635 2878 3.737850 AGCTAGCTCATAAACCATGCTC 58.262 45.455 12.68 0.00 35.47 4.26
2636 2879 3.853355 AGCTAGCTCATAAACCATGCT 57.147 42.857 12.68 0.00 37.72 3.79
2637 2880 4.084328 CGTTAGCTAGCTCATAAACCATGC 60.084 45.833 23.26 0.00 34.35 4.06
2638 2881 5.289595 TCGTTAGCTAGCTCATAAACCATG 58.710 41.667 23.26 7.70 35.81 3.66
2639 2882 5.531122 TCGTTAGCTAGCTCATAAACCAT 57.469 39.130 23.26 0.00 0.00 3.55
2640 2883 4.994907 TCGTTAGCTAGCTCATAAACCA 57.005 40.909 23.26 5.89 0.00 3.67
2641 2884 5.529791 TCATCGTTAGCTAGCTCATAAACC 58.470 41.667 23.26 4.30 0.00 3.27
2642 2885 8.918961 ATATCATCGTTAGCTAGCTCATAAAC 57.081 34.615 23.26 18.39 0.00 2.01
2646 2889 8.511321 GCTATATATCATCGTTAGCTAGCTCAT 58.489 37.037 23.26 6.54 34.00 2.90
2647 2890 7.041030 GGCTATATATCATCGTTAGCTAGCTCA 60.041 40.741 23.26 7.73 36.41 4.26
2648 2891 7.174253 AGGCTATATATCATCGTTAGCTAGCTC 59.826 40.741 23.26 6.97 36.41 4.09
2649 2892 7.001674 AGGCTATATATCATCGTTAGCTAGCT 58.998 38.462 23.12 23.12 36.41 3.32
2650 2893 7.209471 AGGCTATATATCATCGTTAGCTAGC 57.791 40.000 6.62 6.62 36.41 3.42
2651 2894 9.274206 TGTAGGCTATATATCATCGTTAGCTAG 57.726 37.037 0.00 0.00 36.41 3.42
2652 2895 9.274206 CTGTAGGCTATATATCATCGTTAGCTA 57.726 37.037 0.00 0.00 36.41 3.32
2653 2896 7.993758 TCTGTAGGCTATATATCATCGTTAGCT 59.006 37.037 0.00 0.00 36.41 3.32
2654 2897 8.155821 TCTGTAGGCTATATATCATCGTTAGC 57.844 38.462 0.00 0.00 35.62 3.09
2657 2900 9.190317 TCATTCTGTAGGCTATATATCATCGTT 57.810 33.333 0.00 0.00 0.00 3.85
2658 2901 8.625651 GTCATTCTGTAGGCTATATATCATCGT 58.374 37.037 0.00 0.00 0.00 3.73
2659 2902 8.845227 AGTCATTCTGTAGGCTATATATCATCG 58.155 37.037 0.00 0.00 0.00 3.84
2669 2912 9.982651 GATGTAAATTAGTCATTCTGTAGGCTA 57.017 33.333 0.00 0.00 0.00 3.93
2670 2913 8.709308 AGATGTAAATTAGTCATTCTGTAGGCT 58.291 33.333 0.00 0.00 0.00 4.58
2671 2914 8.894768 AGATGTAAATTAGTCATTCTGTAGGC 57.105 34.615 0.00 0.00 0.00 3.93
2970 3527 5.508200 AATGAAAACTAACGACCAGCAAA 57.492 34.783 0.00 0.00 0.00 3.68
3099 3668 5.029807 TCTGGCATTTTATGTATCCACGA 57.970 39.130 0.00 0.00 0.00 4.35
3236 6367 8.864024 CAAATAAAACACACATACAAACACACA 58.136 29.630 0.00 0.00 0.00 3.72
3237 6368 8.865001 ACAAATAAAACACACATACAAACACAC 58.135 29.630 0.00 0.00 0.00 3.82
3238 6369 8.864024 CACAAATAAAACACACATACAAACACA 58.136 29.630 0.00 0.00 0.00 3.72
3239 6370 8.324567 CCACAAATAAAACACACATACAAACAC 58.675 33.333 0.00 0.00 0.00 3.32
3240 6371 7.010552 GCCACAAATAAAACACACATACAAACA 59.989 33.333 0.00 0.00 0.00 2.83
3241 6372 7.341446 GCCACAAATAAAACACACATACAAAC 58.659 34.615 0.00 0.00 0.00 2.93
3242 6373 6.480320 GGCCACAAATAAAACACACATACAAA 59.520 34.615 0.00 0.00 0.00 2.83
3243 6374 5.986135 GGCCACAAATAAAACACACATACAA 59.014 36.000 0.00 0.00 0.00 2.41
3244 6375 5.509840 GGGCCACAAATAAAACACACATACA 60.510 40.000 4.39 0.00 0.00 2.29
3245 6376 4.926832 GGGCCACAAATAAAACACACATAC 59.073 41.667 4.39 0.00 0.00 2.39


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.