Multiple sequence alignment - TraesCS2A01G421700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G421700 chr2A 100.000 3135 0 0 1 3135 677102397 677099263 0.000000e+00 5790
1 TraesCS2A01G421700 chr2A 98.706 2783 22 4 1 2769 677173685 677170903 0.000000e+00 4927
2 TraesCS2A01G421700 chr2A 99.918 2429 2 0 1 2429 677070456 677068028 0.000000e+00 4475
3 TraesCS2A01G421700 chr2A 99.629 2429 3 1 1 2429 677158462 677156040 0.000000e+00 4431
4 TraesCS2A01G421700 chr2A 88.249 868 59 19 622 1483 677039777 677038947 0.000000e+00 998
5 TraesCS2A01G421700 chr2A 88.919 370 19 4 1 351 677040139 677039773 1.340000e-118 436
6 TraesCS2A01G421700 chr2A 84.788 401 22 15 2767 3134 677068459 677068065 1.780000e-97 366
7 TraesCS2A01G421700 chr2A 84.788 401 22 15 2767 3134 677100400 677100006 1.780000e-97 366
8 TraesCS2A01G421700 chr2A 84.788 401 22 15 2767 3134 677156471 677156077 1.780000e-97 366
9 TraesCS2A01G421700 chr2A 84.788 401 22 15 2767 3134 677171674 677171280 1.780000e-97 366
10 TraesCS2A01G421700 chr2A 86.818 220 19 7 132 349 677224660 677224449 1.450000e-58 237
11 TraesCS2A01G421700 chr2A 85.909 220 20 7 132 348 677223429 677223218 1.130000e-54 224
12 TraesCS2A01G421700 chr2A 92.308 156 10 2 2767 2920 677367548 677367393 1.460000e-53 220
13 TraesCS2A01G421700 chr2D 95.820 2153 64 11 622 2769 532607841 532605710 0.000000e+00 3454
14 TraesCS2A01G421700 chr2D 89.286 364 20 7 1 351 532500558 532500201 3.710000e-119 438
15 TraesCS2A01G421700 chr2D 84.655 391 29 14 2767 3134 532498840 532498458 8.270000e-96 361
16 TraesCS2A01G421700 chr2D 81.707 328 24 24 2767 3064 533028902 533028581 1.120000e-59 241
17 TraesCS2A01G421700 chr2D 83.806 247 25 8 2767 3007 28763918 28764155 1.460000e-53 220
18 TraesCS2A01G421700 chrUn 95.360 2155 61 13 619 2768 183904055 183906175 0.000000e+00 3389
19 TraesCS2A01G421700 chrUn 95.128 2155 63 15 619 2768 240848497 240850614 0.000000e+00 3360
20 TraesCS2A01G421700 chrUn 95.079 2154 65 13 619 2768 260027911 260030027 0.000000e+00 3352
21 TraesCS2A01G421700 chrUn 94.937 2153 66 14 622 2768 235135857 235133742 0.000000e+00 3332
22 TraesCS2A01G421700 chrUn 95.510 1648 49 7 1125 2768 279914453 279916079 0.000000e+00 2610
23 TraesCS2A01G421700 chrUn 95.519 1629 48 11 1144 2768 304976116 304977723 0.000000e+00 2580
24 TraesCS2A01G421700 chrUn 92.399 592 24 5 2181 2768 403431460 403430886 0.000000e+00 824
25 TraesCS2A01G421700 chrUn 85.876 177 12 7 1 164 183903517 183903693 3.210000e-40 176
26 TraesCS2A01G421700 chrUn 85.876 177 12 7 1 164 235136398 235136222 3.210000e-40 176
27 TraesCS2A01G421700 chrUn 85.876 177 12 7 1 164 240847959 240848135 3.210000e-40 176
28 TraesCS2A01G421700 chrUn 85.876 177 12 7 1 164 260027373 260027549 3.210000e-40 176
29 TraesCS2A01G421700 chrUn 85.876 177 12 7 1 164 277811471 277811295 3.210000e-40 176
30 TraesCS2A01G421700 chrUn 85.876 177 12 7 1 164 362478618 362478794 3.210000e-40 176
31 TraesCS2A01G421700 chrUn 85.876 177 12 7 1 164 397613095 397613271 3.210000e-40 176
32 TraesCS2A01G421700 chrUn 85.593 118 11 2 132 243 26076394 26076277 5.490000e-23 119
33 TraesCS2A01G421700 chr2B 85.570 790 58 23 710 1483 632566764 632566015 0.000000e+00 776
34 TraesCS2A01G421700 chr2B 97.482 278 7 0 350 627 96584174 96584451 2.830000e-130 475
35 TraesCS2A01G421700 chr2B 85.870 368 33 7 1 351 632514125 632513760 1.060000e-99 374
36 TraesCS2A01G421700 chr2B 84.224 393 27 18 2767 3132 632563525 632563141 1.790000e-92 350
37 TraesCS2A01G421700 chr7B 97.865 281 6 0 346 626 57000029 56999749 1.310000e-133 486
38 TraesCS2A01G421700 chr6B 98.201 278 3 2 353 628 257601571 257601294 4.700000e-133 484
39 TraesCS2A01G421700 chr3A 96.403 278 10 0 353 630 361973298 361973021 2.850000e-125 459
40 TraesCS2A01G421700 chr4A 95.730 281 12 0 348 628 593489941 593490221 1.330000e-123 453
41 TraesCS2A01G421700 chr7A 96.350 274 10 0 353 626 696328532 696328259 4.770000e-123 451


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G421700 chr2A 677099263 677102397 3134 True 3078.0 5790 92.3940 1 3135 2 chr2A.!!$R4 3134
1 TraesCS2A01G421700 chr2A 677170903 677173685 2782 True 2646.5 4927 91.7470 1 3134 2 chr2A.!!$R6 3133
2 TraesCS2A01G421700 chr2A 677068028 677070456 2428 True 2420.5 4475 92.3530 1 3134 2 chr2A.!!$R3 3133
3 TraesCS2A01G421700 chr2A 677156040 677158462 2422 True 2398.5 4431 92.2085 1 3134 2 chr2A.!!$R5 3133
4 TraesCS2A01G421700 chr2A 677038947 677040139 1192 True 717.0 998 88.5840 1 1483 2 chr2A.!!$R2 1482
5 TraesCS2A01G421700 chr2A 677223218 677224660 1442 True 230.5 237 86.3635 132 349 2 chr2A.!!$R7 217
6 TraesCS2A01G421700 chr2D 532605710 532607841 2131 True 3454.0 3454 95.8200 622 2769 1 chr2D.!!$R1 2147
7 TraesCS2A01G421700 chr2D 532498458 532500558 2100 True 399.5 438 86.9705 1 3134 2 chr2D.!!$R3 3133
8 TraesCS2A01G421700 chrUn 279914453 279916079 1626 False 2610.0 2610 95.5100 1125 2768 1 chrUn.!!$F1 1643
9 TraesCS2A01G421700 chrUn 304976116 304977723 1607 False 2580.0 2580 95.5190 1144 2768 1 chrUn.!!$F2 1624
10 TraesCS2A01G421700 chrUn 183903517 183906175 2658 False 1782.5 3389 90.6180 1 2768 2 chrUn.!!$F5 2767
11 TraesCS2A01G421700 chrUn 240847959 240850614 2655 False 1768.0 3360 90.5020 1 2768 2 chrUn.!!$F6 2767
12 TraesCS2A01G421700 chrUn 260027373 260030027 2654 False 1764.0 3352 90.4775 1 2768 2 chrUn.!!$F7 2767
13 TraesCS2A01G421700 chrUn 235133742 235136398 2656 True 1754.0 3332 90.4065 1 2768 2 chrUn.!!$R4 2767
14 TraesCS2A01G421700 chrUn 403430886 403431460 574 True 824.0 824 92.3990 2181 2768 1 chrUn.!!$R3 587
15 TraesCS2A01G421700 chr2B 632563141 632566764 3623 True 563.0 776 84.8970 710 3132 2 chr2B.!!$R2 2422

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
41 42 1.873698 TGAGCCGTCCTTGTGTTTAC 58.126 50.0 0.0 0.0 0.0 2.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2769 5758 4.286297 TCTTCACCAACCAGTATTCCTG 57.714 45.455 0.0 0.0 41.15 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.873698 TGAGCCGTCCTTGTGTTTAC 58.126 50.000 0.00 0.00 0.00 2.01
2429 5220 3.321968 TCAGCTAGCTATGGTATGGTGTG 59.678 47.826 18.86 0.79 0.00 3.82
2435 5226 8.059461 AGCTAGCTATGGTATGGTGTGTATATA 58.941 37.037 17.69 0.00 0.00 0.86
2769 5758 3.447742 GCTAAGTTGCAACATTATGGGC 58.552 45.455 30.11 18.71 0.00 5.36
2770 5759 3.119173 GCTAAGTTGCAACATTATGGGCA 60.119 43.478 30.11 9.20 31.59 5.36
2771 5760 3.598019 AAGTTGCAACATTATGGGCAG 57.402 42.857 30.11 0.00 34.28 4.85
2772 5761 1.826720 AGTTGCAACATTATGGGCAGG 59.173 47.619 30.11 0.00 34.28 4.85
2773 5762 1.824230 GTTGCAACATTATGGGCAGGA 59.176 47.619 24.52 0.00 34.28 3.86
2774 5763 2.228545 TGCAACATTATGGGCAGGAA 57.771 45.000 9.20 0.00 30.35 3.36
2775 5764 2.749600 TGCAACATTATGGGCAGGAAT 58.250 42.857 9.20 0.00 30.35 3.01
2776 5765 3.908476 TGCAACATTATGGGCAGGAATA 58.092 40.909 9.20 0.00 30.35 1.75
2777 5766 3.636300 TGCAACATTATGGGCAGGAATAC 59.364 43.478 9.20 0.00 30.35 1.89
2778 5767 3.891366 GCAACATTATGGGCAGGAATACT 59.109 43.478 6.31 0.00 0.00 2.12
2790 5779 4.286297 CAGGAATACTGGTTGGTGAAGA 57.714 45.455 0.00 0.00 43.70 2.87
2791 5780 4.651778 CAGGAATACTGGTTGGTGAAGAA 58.348 43.478 0.00 0.00 43.70 2.52
2792 5781 5.256474 CAGGAATACTGGTTGGTGAAGAAT 58.744 41.667 0.00 0.00 43.70 2.40
2793 5782 5.355350 CAGGAATACTGGTTGGTGAAGAATC 59.645 44.000 0.00 0.00 43.70 2.52
2794 5783 5.014123 AGGAATACTGGTTGGTGAAGAATCA 59.986 40.000 0.00 0.00 0.00 2.57
2795 5784 5.355350 GGAATACTGGTTGGTGAAGAATCAG 59.645 44.000 0.00 0.00 35.88 2.90
2796 5785 3.864789 ACTGGTTGGTGAAGAATCAGT 57.135 42.857 0.00 0.00 35.88 3.41
2797 5786 3.480470 ACTGGTTGGTGAAGAATCAGTG 58.520 45.455 0.00 0.00 35.88 3.66
2798 5787 2.816087 CTGGTTGGTGAAGAATCAGTGG 59.184 50.000 0.00 0.00 35.88 4.00
2799 5788 2.162681 GGTTGGTGAAGAATCAGTGGG 58.837 52.381 0.00 0.00 35.88 4.61
2800 5789 2.162681 GTTGGTGAAGAATCAGTGGGG 58.837 52.381 0.00 0.00 35.88 4.96
2801 5790 0.698238 TGGTGAAGAATCAGTGGGGG 59.302 55.000 0.00 0.00 35.88 5.40
2802 5791 0.991920 GGTGAAGAATCAGTGGGGGA 59.008 55.000 0.00 0.00 35.88 4.81
2803 5792 1.340114 GGTGAAGAATCAGTGGGGGAC 60.340 57.143 0.00 0.00 35.88 4.46
2804 5793 0.613260 TGAAGAATCAGTGGGGGACG 59.387 55.000 0.00 0.00 0.00 4.79
2805 5794 0.107654 GAAGAATCAGTGGGGGACGG 60.108 60.000 0.00 0.00 0.00 4.79
2806 5795 1.562672 AAGAATCAGTGGGGGACGGG 61.563 60.000 0.00 0.00 0.00 5.28
2807 5796 3.015145 AATCAGTGGGGGACGGGG 61.015 66.667 0.00 0.00 0.00 5.73
2808 5797 3.883822 AATCAGTGGGGGACGGGGT 62.884 63.158 0.00 0.00 0.00 4.95
2837 5826 3.264897 GGCTACATGCGCCTCACG 61.265 66.667 16.99 0.00 44.17 4.35
2881 5870 3.142838 GGCCACCGTCGCCTACTA 61.143 66.667 0.00 0.00 43.48 1.82
2882 5871 2.496291 GGCCACCGTCGCCTACTAT 61.496 63.158 0.00 0.00 43.48 2.12
2883 5872 1.007618 GCCACCGTCGCCTACTATC 60.008 63.158 0.00 0.00 0.00 2.08
2884 5873 1.658673 CCACCGTCGCCTACTATCC 59.341 63.158 0.00 0.00 0.00 2.59
2885 5874 1.281960 CACCGTCGCCTACTATCCG 59.718 63.158 0.00 0.00 0.00 4.18
2886 5875 1.146930 ACCGTCGCCTACTATCCGA 59.853 57.895 0.00 0.00 0.00 4.55
2887 5876 1.162800 ACCGTCGCCTACTATCCGAC 61.163 60.000 2.63 2.63 45.56 4.79
2888 5877 1.573436 CGTCGCCTACTATCCGACC 59.427 63.158 6.80 0.00 46.09 4.79
2889 5878 1.162181 CGTCGCCTACTATCCGACCA 61.162 60.000 6.80 0.00 46.09 4.02
2890 5879 1.245732 GTCGCCTACTATCCGACCAT 58.754 55.000 1.34 0.00 43.89 3.55
2891 5880 1.068472 GTCGCCTACTATCCGACCATG 60.068 57.143 1.34 0.00 43.89 3.66
2892 5881 1.202842 TCGCCTACTATCCGACCATGA 60.203 52.381 0.00 0.00 0.00 3.07
2893 5882 1.611977 CGCCTACTATCCGACCATGAA 59.388 52.381 0.00 0.00 0.00 2.57
2894 5883 2.607282 CGCCTACTATCCGACCATGAAC 60.607 54.545 0.00 0.00 0.00 3.18
2895 5884 2.364324 GCCTACTATCCGACCATGAACA 59.636 50.000 0.00 0.00 0.00 3.18
2896 5885 3.553096 GCCTACTATCCGACCATGAACAG 60.553 52.174 0.00 0.00 0.00 3.16
2897 5886 2.604046 ACTATCCGACCATGAACAGC 57.396 50.000 0.00 0.00 0.00 4.40
2898 5887 2.111384 ACTATCCGACCATGAACAGCT 58.889 47.619 0.00 0.00 0.00 4.24
2899 5888 2.101582 ACTATCCGACCATGAACAGCTC 59.898 50.000 0.00 0.00 0.00 4.09
2900 5889 1.198713 ATCCGACCATGAACAGCTCT 58.801 50.000 0.00 0.00 0.00 4.09
2901 5890 0.976641 TCCGACCATGAACAGCTCTT 59.023 50.000 0.00 0.00 0.00 2.85
2902 5891 2.176045 TCCGACCATGAACAGCTCTTA 58.824 47.619 0.00 0.00 0.00 2.10
2903 5892 2.565391 TCCGACCATGAACAGCTCTTAA 59.435 45.455 0.00 0.00 0.00 1.85
2904 5893 3.007506 TCCGACCATGAACAGCTCTTAAA 59.992 43.478 0.00 0.00 0.00 1.52
2905 5894 3.125316 CCGACCATGAACAGCTCTTAAAC 59.875 47.826 0.00 0.00 0.00 2.01
2906 5895 3.745975 CGACCATGAACAGCTCTTAAACA 59.254 43.478 0.00 0.00 0.00 2.83
2907 5896 4.377431 CGACCATGAACAGCTCTTAAACAC 60.377 45.833 0.00 0.00 0.00 3.32
2908 5897 3.821033 ACCATGAACAGCTCTTAAACACC 59.179 43.478 0.00 0.00 0.00 4.16
2909 5898 3.820467 CCATGAACAGCTCTTAAACACCA 59.180 43.478 0.00 0.00 0.00 4.17
2910 5899 4.083110 CCATGAACAGCTCTTAAACACCAG 60.083 45.833 0.00 0.00 0.00 4.00
2911 5900 4.150897 TGAACAGCTCTTAAACACCAGT 57.849 40.909 0.00 0.00 0.00 4.00
2912 5901 4.127171 TGAACAGCTCTTAAACACCAGTC 58.873 43.478 0.00 0.00 0.00 3.51
2913 5902 3.838244 ACAGCTCTTAAACACCAGTCA 57.162 42.857 0.00 0.00 0.00 3.41
2914 5903 3.733337 ACAGCTCTTAAACACCAGTCAG 58.267 45.455 0.00 0.00 0.00 3.51
2915 5904 3.134804 ACAGCTCTTAAACACCAGTCAGT 59.865 43.478 0.00 0.00 0.00 3.41
2916 5905 4.344102 ACAGCTCTTAAACACCAGTCAGTA 59.656 41.667 0.00 0.00 0.00 2.74
2917 5906 4.686554 CAGCTCTTAAACACCAGTCAGTAC 59.313 45.833 0.00 0.00 0.00 2.73
2918 5907 4.344102 AGCTCTTAAACACCAGTCAGTACA 59.656 41.667 0.00 0.00 0.00 2.90
2919 5908 5.012148 AGCTCTTAAACACCAGTCAGTACAT 59.988 40.000 0.00 0.00 0.00 2.29
2920 5909 5.120830 GCTCTTAAACACCAGTCAGTACATG 59.879 44.000 0.00 0.00 0.00 3.21
2921 5910 4.994852 TCTTAAACACCAGTCAGTACATGC 59.005 41.667 0.00 0.00 0.00 4.06
2922 5911 2.928801 AACACCAGTCAGTACATGCA 57.071 45.000 0.00 0.00 0.00 3.96
2923 5912 3.423539 AACACCAGTCAGTACATGCAT 57.576 42.857 0.00 0.00 0.00 3.96
2924 5913 2.977914 ACACCAGTCAGTACATGCATC 58.022 47.619 0.00 0.00 0.00 3.91
2925 5914 2.302733 ACACCAGTCAGTACATGCATCA 59.697 45.455 0.00 0.00 0.00 3.07
2926 5915 3.054875 ACACCAGTCAGTACATGCATCAT 60.055 43.478 0.00 0.00 0.00 2.45
2927 5916 3.558829 CACCAGTCAGTACATGCATCATC 59.441 47.826 0.00 0.00 0.00 2.92
2928 5917 2.798847 CCAGTCAGTACATGCATCATCG 59.201 50.000 0.00 0.00 0.00 3.84
2929 5918 3.491447 CCAGTCAGTACATGCATCATCGA 60.491 47.826 0.00 0.00 0.00 3.59
2930 5919 3.734735 CAGTCAGTACATGCATCATCGAG 59.265 47.826 0.00 0.00 0.00 4.04
2931 5920 3.382865 AGTCAGTACATGCATCATCGAGT 59.617 43.478 0.00 0.00 0.00 4.18
2932 5921 4.580580 AGTCAGTACATGCATCATCGAGTA 59.419 41.667 0.00 0.00 0.00 2.59
2933 5922 5.242615 AGTCAGTACATGCATCATCGAGTAT 59.757 40.000 0.00 0.00 0.00 2.12
2934 5923 5.344396 GTCAGTACATGCATCATCGAGTATG 59.656 44.000 0.00 5.60 36.88 2.39
2935 5924 4.624452 CAGTACATGCATCATCGAGTATGG 59.376 45.833 0.00 0.00 36.15 2.74
2936 5925 3.758755 ACATGCATCATCGAGTATGGT 57.241 42.857 0.00 0.05 36.15 3.55
2937 5926 4.077300 ACATGCATCATCGAGTATGGTT 57.923 40.909 0.00 0.00 36.15 3.67
2938 5927 4.454678 ACATGCATCATCGAGTATGGTTT 58.545 39.130 0.00 0.00 36.15 3.27
2939 5928 5.610398 ACATGCATCATCGAGTATGGTTTA 58.390 37.500 0.00 0.00 36.15 2.01
2940 5929 6.233434 ACATGCATCATCGAGTATGGTTTAT 58.767 36.000 0.00 0.00 36.15 1.40
2941 5930 6.369890 ACATGCATCATCGAGTATGGTTTATC 59.630 38.462 0.00 0.00 36.15 1.75
2942 5931 5.852827 TGCATCATCGAGTATGGTTTATCA 58.147 37.500 10.73 0.00 36.15 2.15
2943 5932 5.928264 TGCATCATCGAGTATGGTTTATCAG 59.072 40.000 10.73 0.00 36.15 2.90
2944 5933 5.163913 GCATCATCGAGTATGGTTTATCAGC 60.164 44.000 10.73 0.00 36.15 4.26
2945 5934 5.791336 TCATCGAGTATGGTTTATCAGCT 57.209 39.130 0.00 0.00 36.15 4.24
2946 5935 6.894339 TCATCGAGTATGGTTTATCAGCTA 57.106 37.500 0.00 0.00 36.15 3.32
2947 5936 7.468141 TCATCGAGTATGGTTTATCAGCTAT 57.532 36.000 0.00 0.00 36.15 2.97
2948 5937 8.575649 TCATCGAGTATGGTTTATCAGCTATA 57.424 34.615 0.00 0.00 36.15 1.31
2949 5938 9.020731 TCATCGAGTATGGTTTATCAGCTATAA 57.979 33.333 0.00 0.00 36.15 0.98
2950 5939 9.295214 CATCGAGTATGGTTTATCAGCTATAAG 57.705 37.037 0.00 0.00 30.26 1.73
2951 5940 7.313646 TCGAGTATGGTTTATCAGCTATAAGC 58.686 38.462 0.00 0.00 42.84 3.09
2969 5958 8.946085 GCTATAAGCTACATAAAATACCATGCA 58.054 33.333 0.00 0.00 38.45 3.96
2972 5961 9.745018 ATAAGCTACATAAAATACCATGCAGAT 57.255 29.630 0.00 0.00 0.00 2.90
2973 5962 7.444629 AGCTACATAAAATACCATGCAGATG 57.555 36.000 0.00 0.00 0.00 2.90
2974 5963 6.072286 AGCTACATAAAATACCATGCAGATGC 60.072 38.462 0.00 0.00 42.50 3.91
2994 5983 3.722555 CAGAATGCAATAACACGACGT 57.277 42.857 0.00 0.00 0.00 4.34
2995 5984 4.833469 CAGAATGCAATAACACGACGTA 57.167 40.909 0.00 0.00 0.00 3.57
2996 5985 5.389642 CAGAATGCAATAACACGACGTAT 57.610 39.130 0.00 0.00 0.00 3.06
2997 5986 6.505039 CAGAATGCAATAACACGACGTATA 57.495 37.500 0.00 0.00 0.00 1.47
2998 5987 7.105494 CAGAATGCAATAACACGACGTATAT 57.895 36.000 0.00 0.00 0.00 0.86
2999 5988 8.222984 CAGAATGCAATAACACGACGTATATA 57.777 34.615 0.00 0.00 0.00 0.86
3000 5989 8.154038 CAGAATGCAATAACACGACGTATATAC 58.846 37.037 0.00 2.53 0.00 1.47
3033 6022 8.918202 TTATATTTGAATAAAGCACGGATCCT 57.082 30.769 10.75 0.00 0.00 3.24
3034 6023 5.757850 ATTTGAATAAAGCACGGATCCTC 57.242 39.130 10.75 0.00 0.00 3.71
3035 6024 3.904800 TGAATAAAGCACGGATCCTCA 57.095 42.857 10.75 0.00 0.00 3.86
3036 6025 4.422073 TGAATAAAGCACGGATCCTCAT 57.578 40.909 10.75 0.00 0.00 2.90
3037 6026 5.545063 TGAATAAAGCACGGATCCTCATA 57.455 39.130 10.75 0.00 0.00 2.15
3038 6027 5.297547 TGAATAAAGCACGGATCCTCATAC 58.702 41.667 10.75 0.00 0.00 2.39
3039 6028 4.955811 ATAAAGCACGGATCCTCATACA 57.044 40.909 10.75 0.00 0.00 2.29
3040 6029 3.627395 AAAGCACGGATCCTCATACAA 57.373 42.857 10.75 0.00 0.00 2.41
3041 6030 3.627395 AAGCACGGATCCTCATACAAA 57.373 42.857 10.75 0.00 0.00 2.83
3042 6031 3.185246 AGCACGGATCCTCATACAAAG 57.815 47.619 10.75 0.00 0.00 2.77
3043 6032 2.158900 AGCACGGATCCTCATACAAAGG 60.159 50.000 10.75 0.00 35.05 3.11
3044 6033 2.158957 GCACGGATCCTCATACAAAGGA 60.159 50.000 10.75 0.00 46.68 3.36
3045 6034 3.458189 CACGGATCCTCATACAAAGGAC 58.542 50.000 10.75 0.00 45.50 3.85
3046 6035 2.434702 ACGGATCCTCATACAAAGGACC 59.565 50.000 10.75 0.00 45.50 4.46
3047 6036 2.224305 CGGATCCTCATACAAAGGACCC 60.224 54.545 10.75 0.00 45.50 4.46
3048 6037 2.777692 GGATCCTCATACAAAGGACCCA 59.222 50.000 3.84 0.00 45.14 4.51
3049 6038 3.395941 GGATCCTCATACAAAGGACCCAT 59.604 47.826 3.84 0.00 45.14 4.00
3050 6039 4.141158 GGATCCTCATACAAAGGACCCATT 60.141 45.833 3.84 0.00 45.14 3.16
3051 6040 4.946160 TCCTCATACAAAGGACCCATTT 57.054 40.909 0.00 0.00 38.01 2.32
3052 6041 4.599041 TCCTCATACAAAGGACCCATTTG 58.401 43.478 4.98 4.98 42.17 2.32
3053 6042 3.131046 CCTCATACAAAGGACCCATTTGC 59.869 47.826 6.20 0.00 40.54 3.68
3054 6043 4.019174 CTCATACAAAGGACCCATTTGCT 58.981 43.478 6.20 0.00 40.54 3.91
3055 6044 4.415596 TCATACAAAGGACCCATTTGCTT 58.584 39.130 6.20 0.00 40.54 3.91
3056 6045 5.575157 TCATACAAAGGACCCATTTGCTTA 58.425 37.500 6.20 0.00 40.54 3.09
3057 6046 6.194235 TCATACAAAGGACCCATTTGCTTAT 58.806 36.000 6.20 0.00 40.54 1.73
3058 6047 4.806640 ACAAAGGACCCATTTGCTTATG 57.193 40.909 6.20 0.00 40.54 1.90
3059 6048 4.159557 ACAAAGGACCCATTTGCTTATGT 58.840 39.130 6.20 0.00 40.54 2.29
3064 6053 7.582667 AAGGACCCATTTGCTTATGTAATAC 57.417 36.000 0.00 0.00 0.00 1.89
3066 6055 6.546034 AGGACCCATTTGCTTATGTAATACAC 59.454 38.462 0.00 0.00 0.00 2.90
3067 6056 6.238925 GGACCCATTTGCTTATGTAATACACC 60.239 42.308 0.00 0.00 0.00 4.16
3068 6057 6.191315 ACCCATTTGCTTATGTAATACACCA 58.809 36.000 0.00 0.00 0.00 4.17
3073 6062 9.075519 CATTTGCTTATGTAATACACCACAAAG 57.924 33.333 13.90 7.42 29.71 2.77
3125 6114 7.969536 ACATTTATACTACATCAGTCCATGC 57.030 36.000 0.00 0.00 38.80 4.06
3127 6116 7.658982 ACATTTATACTACATCAGTCCATGCAG 59.341 37.037 0.00 0.00 38.80 4.41
3129 6118 1.556451 ACTACATCAGTCCATGCAGCA 59.444 47.619 0.00 0.00 28.33 4.41
3130 6119 2.172082 ACTACATCAGTCCATGCAGCAT 59.828 45.455 0.52 0.52 28.33 3.79
3131 6120 1.676746 ACATCAGTCCATGCAGCATC 58.323 50.000 4.38 0.00 0.00 3.91
3132 6121 0.586802 CATCAGTCCATGCAGCATCG 59.413 55.000 4.38 0.00 0.00 3.84
3133 6122 0.466963 ATCAGTCCATGCAGCATCGA 59.533 50.000 4.38 0.64 0.00 3.59
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.086696 CTGATTTGGTACACTGCCGG 58.913 55.000 0.00 0.00 39.29 6.13
2769 5758 4.286297 TCTTCACCAACCAGTATTCCTG 57.714 45.455 0.00 0.00 41.15 3.86
2770 5759 4.993705 TTCTTCACCAACCAGTATTCCT 57.006 40.909 0.00 0.00 0.00 3.36
2771 5760 5.253330 TGATTCTTCACCAACCAGTATTCC 58.747 41.667 0.00 0.00 0.00 3.01
2772 5761 5.940470 ACTGATTCTTCACCAACCAGTATTC 59.060 40.000 0.00 0.00 32.39 1.75
2773 5762 5.707298 CACTGATTCTTCACCAACCAGTATT 59.293 40.000 0.00 0.00 32.81 1.89
2774 5763 5.248640 CACTGATTCTTCACCAACCAGTAT 58.751 41.667 0.00 0.00 32.81 2.12
2775 5764 4.504864 CCACTGATTCTTCACCAACCAGTA 60.505 45.833 0.00 0.00 32.81 2.74
2776 5765 3.480470 CACTGATTCTTCACCAACCAGT 58.520 45.455 0.00 0.00 34.17 4.00
2777 5766 2.816087 CCACTGATTCTTCACCAACCAG 59.184 50.000 0.00 0.00 0.00 4.00
2778 5767 2.488891 CCCACTGATTCTTCACCAACCA 60.489 50.000 0.00 0.00 0.00 3.67
2779 5768 2.162681 CCCACTGATTCTTCACCAACC 58.837 52.381 0.00 0.00 0.00 3.77
2780 5769 2.162681 CCCCACTGATTCTTCACCAAC 58.837 52.381 0.00 0.00 0.00 3.77
2781 5770 1.075374 CCCCCACTGATTCTTCACCAA 59.925 52.381 0.00 0.00 0.00 3.67
2782 5771 0.698238 CCCCCACTGATTCTTCACCA 59.302 55.000 0.00 0.00 0.00 4.17
2783 5772 0.991920 TCCCCCACTGATTCTTCACC 59.008 55.000 0.00 0.00 0.00 4.02
2784 5773 1.676014 CGTCCCCCACTGATTCTTCAC 60.676 57.143 0.00 0.00 0.00 3.18
2785 5774 0.613260 CGTCCCCCACTGATTCTTCA 59.387 55.000 0.00 0.00 0.00 3.02
2786 5775 0.107654 CCGTCCCCCACTGATTCTTC 60.108 60.000 0.00 0.00 0.00 2.87
2787 5776 1.562672 CCCGTCCCCCACTGATTCTT 61.563 60.000 0.00 0.00 0.00 2.52
2788 5777 1.995626 CCCGTCCCCCACTGATTCT 60.996 63.158 0.00 0.00 0.00 2.40
2789 5778 2.590092 CCCGTCCCCCACTGATTC 59.410 66.667 0.00 0.00 0.00 2.52
2790 5779 3.015145 CCCCGTCCCCCACTGATT 61.015 66.667 0.00 0.00 0.00 2.57
2791 5780 4.348495 ACCCCGTCCCCCACTGAT 62.348 66.667 0.00 0.00 0.00 2.90
2865 5854 1.007618 GATAGTAGGCGACGGTGGC 60.008 63.158 6.58 6.58 0.00 5.01
2866 5855 1.658673 GGATAGTAGGCGACGGTGG 59.341 63.158 0.00 0.00 0.00 4.61
2867 5856 1.162181 TCGGATAGTAGGCGACGGTG 61.162 60.000 0.00 0.00 0.00 4.94
2868 5857 1.146930 TCGGATAGTAGGCGACGGT 59.853 57.895 0.00 0.00 0.00 4.83
2869 5858 1.573436 GTCGGATAGTAGGCGACGG 59.427 63.158 0.00 0.00 0.00 4.79
2870 5859 1.162181 TGGTCGGATAGTAGGCGACG 61.162 60.000 0.00 0.00 0.00 5.12
2871 5860 1.068472 CATGGTCGGATAGTAGGCGAC 60.068 57.143 0.00 0.00 0.00 5.19
2872 5861 1.202842 TCATGGTCGGATAGTAGGCGA 60.203 52.381 0.00 0.00 0.00 5.54
2873 5862 1.244816 TCATGGTCGGATAGTAGGCG 58.755 55.000 0.00 0.00 0.00 5.52
2874 5863 2.364324 TGTTCATGGTCGGATAGTAGGC 59.636 50.000 0.00 0.00 0.00 3.93
2875 5864 3.553096 GCTGTTCATGGTCGGATAGTAGG 60.553 52.174 0.00 0.00 0.00 3.18
2876 5865 3.319405 AGCTGTTCATGGTCGGATAGTAG 59.681 47.826 0.00 0.00 0.00 2.57
2877 5866 3.296854 AGCTGTTCATGGTCGGATAGTA 58.703 45.455 0.00 0.00 0.00 1.82
2878 5867 2.101582 GAGCTGTTCATGGTCGGATAGT 59.898 50.000 0.00 0.00 0.00 2.12
2879 5868 2.363680 AGAGCTGTTCATGGTCGGATAG 59.636 50.000 0.00 0.00 37.07 2.08
2880 5869 2.388735 AGAGCTGTTCATGGTCGGATA 58.611 47.619 0.00 0.00 37.07 2.59
2881 5870 1.198713 AGAGCTGTTCATGGTCGGAT 58.801 50.000 0.00 0.00 37.07 4.18
2882 5871 0.976641 AAGAGCTGTTCATGGTCGGA 59.023 50.000 0.00 0.00 37.07 4.55
2883 5872 2.672961 TAAGAGCTGTTCATGGTCGG 57.327 50.000 0.00 0.00 37.07 4.79
2884 5873 3.745975 TGTTTAAGAGCTGTTCATGGTCG 59.254 43.478 0.00 0.00 37.07 4.79
2885 5874 4.083271 GGTGTTTAAGAGCTGTTCATGGTC 60.083 45.833 0.00 0.00 0.00 4.02
2886 5875 3.821033 GGTGTTTAAGAGCTGTTCATGGT 59.179 43.478 0.00 0.00 0.00 3.55
2887 5876 3.820467 TGGTGTTTAAGAGCTGTTCATGG 59.180 43.478 0.00 0.00 0.00 3.66
2888 5877 4.516698 ACTGGTGTTTAAGAGCTGTTCATG 59.483 41.667 0.00 0.00 0.00 3.07
2889 5878 4.718961 ACTGGTGTTTAAGAGCTGTTCAT 58.281 39.130 0.00 0.00 0.00 2.57
2890 5879 4.127171 GACTGGTGTTTAAGAGCTGTTCA 58.873 43.478 0.00 0.00 0.00 3.18
2891 5880 4.127171 TGACTGGTGTTTAAGAGCTGTTC 58.873 43.478 0.00 0.00 0.00 3.18
2892 5881 4.130118 CTGACTGGTGTTTAAGAGCTGTT 58.870 43.478 0.25 0.25 0.00 3.16
2893 5882 3.134804 ACTGACTGGTGTTTAAGAGCTGT 59.865 43.478 3.78 3.78 0.00 4.40
2894 5883 3.733337 ACTGACTGGTGTTTAAGAGCTG 58.267 45.455 0.00 0.00 0.00 4.24
2895 5884 4.344102 TGTACTGACTGGTGTTTAAGAGCT 59.656 41.667 0.00 0.00 0.00 4.09
2896 5885 4.628074 TGTACTGACTGGTGTTTAAGAGC 58.372 43.478 0.00 0.00 0.00 4.09
2897 5886 5.120830 GCATGTACTGACTGGTGTTTAAGAG 59.879 44.000 0.00 0.00 0.00 2.85
2898 5887 4.994852 GCATGTACTGACTGGTGTTTAAGA 59.005 41.667 0.00 0.00 0.00 2.10
2899 5888 4.754618 TGCATGTACTGACTGGTGTTTAAG 59.245 41.667 0.00 0.00 0.00 1.85
2900 5889 4.709250 TGCATGTACTGACTGGTGTTTAA 58.291 39.130 0.00 0.00 0.00 1.52
2901 5890 4.344359 TGCATGTACTGACTGGTGTTTA 57.656 40.909 0.00 0.00 0.00 2.01
2902 5891 3.207265 TGCATGTACTGACTGGTGTTT 57.793 42.857 0.00 0.00 0.00 2.83
2903 5892 2.928801 TGCATGTACTGACTGGTGTT 57.071 45.000 0.00 0.00 0.00 3.32
2904 5893 2.302733 TGATGCATGTACTGACTGGTGT 59.697 45.455 2.46 0.00 0.00 4.16
2905 5894 2.976589 TGATGCATGTACTGACTGGTG 58.023 47.619 2.46 0.00 0.00 4.17
2906 5895 3.739209 CGATGATGCATGTACTGACTGGT 60.739 47.826 2.46 0.00 0.00 4.00
2907 5896 2.798847 CGATGATGCATGTACTGACTGG 59.201 50.000 2.46 0.00 0.00 4.00
2908 5897 3.709987 TCGATGATGCATGTACTGACTG 58.290 45.455 2.46 0.00 0.00 3.51
2909 5898 3.382865 ACTCGATGATGCATGTACTGACT 59.617 43.478 2.46 0.00 0.00 3.41
2910 5899 3.711086 ACTCGATGATGCATGTACTGAC 58.289 45.455 2.46 0.00 0.00 3.51
2911 5900 5.464168 CATACTCGATGATGCATGTACTGA 58.536 41.667 2.46 0.00 37.82 3.41
2912 5901 4.624452 CCATACTCGATGATGCATGTACTG 59.376 45.833 2.46 0.48 37.82 2.74
2913 5902 4.281941 ACCATACTCGATGATGCATGTACT 59.718 41.667 2.46 0.00 37.82 2.73
2914 5903 4.560128 ACCATACTCGATGATGCATGTAC 58.440 43.478 2.46 0.00 37.82 2.90
2915 5904 4.871933 ACCATACTCGATGATGCATGTA 57.128 40.909 2.46 0.00 37.82 2.29
2916 5905 3.758755 ACCATACTCGATGATGCATGT 57.241 42.857 2.46 0.00 37.82 3.21
2917 5906 6.369615 TGATAAACCATACTCGATGATGCATG 59.630 38.462 2.46 0.00 37.82 4.06
2918 5907 6.466812 TGATAAACCATACTCGATGATGCAT 58.533 36.000 0.00 0.00 37.82 3.96
2919 5908 5.852827 TGATAAACCATACTCGATGATGCA 58.147 37.500 0.00 0.00 37.82 3.96
2920 5909 5.163913 GCTGATAAACCATACTCGATGATGC 60.164 44.000 0.00 0.00 37.82 3.91
2921 5910 6.162079 AGCTGATAAACCATACTCGATGATG 58.838 40.000 0.00 0.00 37.82 3.07
2922 5911 6.352016 AGCTGATAAACCATACTCGATGAT 57.648 37.500 0.00 0.00 37.82 2.45
2923 5912 5.791336 AGCTGATAAACCATACTCGATGA 57.209 39.130 0.00 0.00 37.82 2.92
2924 5913 9.295214 CTTATAGCTGATAAACCATACTCGATG 57.705 37.037 0.00 0.00 30.75 3.84
2925 5914 7.976734 GCTTATAGCTGATAAACCATACTCGAT 59.023 37.037 0.00 0.00 38.45 3.59
2926 5915 7.313646 GCTTATAGCTGATAAACCATACTCGA 58.686 38.462 0.00 0.00 38.45 4.04
2927 5916 7.513190 GCTTATAGCTGATAAACCATACTCG 57.487 40.000 0.00 0.00 38.45 4.18
2943 5932 8.946085 TGCATGGTATTTTATGTAGCTTATAGC 58.054 33.333 0.00 0.00 42.84 2.97
2946 5935 9.745018 ATCTGCATGGTATTTTATGTAGCTTAT 57.255 29.630 0.00 0.00 37.08 1.73
2947 5936 9.002600 CATCTGCATGGTATTTTATGTAGCTTA 57.997 33.333 0.00 0.00 37.08 3.09
2948 5937 7.522725 GCATCTGCATGGTATTTTATGTAGCTT 60.523 37.037 0.00 0.00 41.59 3.74
2949 5938 6.072286 GCATCTGCATGGTATTTTATGTAGCT 60.072 38.462 0.00 0.00 41.59 3.32
2950 5939 6.088824 GCATCTGCATGGTATTTTATGTAGC 58.911 40.000 0.00 0.00 41.59 3.58
2973 5962 2.159707 ACGTCGTGTTATTGCATTCTGC 60.160 45.455 0.00 0.00 45.29 4.26
2974 5963 3.722555 ACGTCGTGTTATTGCATTCTG 57.277 42.857 0.00 0.00 0.00 3.02
2975 5964 7.060289 CGTATATACGTCGTGTTATTGCATTCT 59.940 37.037 24.02 0.00 44.13 2.40
2976 5965 7.155759 CGTATATACGTCGTGTTATTGCATTC 58.844 38.462 24.02 0.00 44.13 2.67
2977 5966 7.029925 CGTATATACGTCGTGTTATTGCATT 57.970 36.000 24.02 0.00 44.13 3.56
2978 5967 6.606965 CGTATATACGTCGTGTTATTGCAT 57.393 37.500 24.02 0.00 44.13 3.96
3007 5996 9.520515 AGGATCCGTGCTTTATTCAAATATAAT 57.479 29.630 5.98 0.00 0.00 1.28
3008 5997 8.918202 AGGATCCGTGCTTTATTCAAATATAA 57.082 30.769 5.98 0.00 0.00 0.98
3009 5998 8.154203 TGAGGATCCGTGCTTTATTCAAATATA 58.846 33.333 5.98 0.00 0.00 0.86
3010 5999 6.998074 TGAGGATCCGTGCTTTATTCAAATAT 59.002 34.615 5.98 0.00 0.00 1.28
3011 6000 6.353323 TGAGGATCCGTGCTTTATTCAAATA 58.647 36.000 5.98 0.00 0.00 1.40
3012 6001 5.192927 TGAGGATCCGTGCTTTATTCAAAT 58.807 37.500 5.98 0.00 0.00 2.32
3013 6002 4.584874 TGAGGATCCGTGCTTTATTCAAA 58.415 39.130 5.98 0.00 0.00 2.69
3014 6003 4.214986 TGAGGATCCGTGCTTTATTCAA 57.785 40.909 5.98 0.00 0.00 2.69
3015 6004 3.904800 TGAGGATCCGTGCTTTATTCA 57.095 42.857 5.98 0.00 0.00 2.57
3016 6005 5.297547 TGTATGAGGATCCGTGCTTTATTC 58.702 41.667 5.98 0.00 0.00 1.75
3017 6006 5.290493 TGTATGAGGATCCGTGCTTTATT 57.710 39.130 5.98 0.00 0.00 1.40
3018 6007 4.955811 TGTATGAGGATCCGTGCTTTAT 57.044 40.909 5.98 0.00 0.00 1.40
3019 6008 4.746535 TTGTATGAGGATCCGTGCTTTA 57.253 40.909 5.98 0.00 0.00 1.85
3020 6009 3.627395 TTGTATGAGGATCCGTGCTTT 57.373 42.857 5.98 0.00 0.00 3.51
3021 6010 3.535561 CTTTGTATGAGGATCCGTGCTT 58.464 45.455 5.98 1.36 0.00 3.91
3022 6011 2.158900 CCTTTGTATGAGGATCCGTGCT 60.159 50.000 5.98 0.00 36.33 4.40
3023 6012 2.158957 TCCTTTGTATGAGGATCCGTGC 60.159 50.000 5.98 0.44 38.37 5.34
3024 6013 3.458189 GTCCTTTGTATGAGGATCCGTG 58.542 50.000 5.98 0.00 44.65 4.94
3025 6014 2.434702 GGTCCTTTGTATGAGGATCCGT 59.565 50.000 5.98 0.00 44.65 4.69
3026 6015 3.113260 GGTCCTTTGTATGAGGATCCG 57.887 52.381 5.98 0.00 44.65 4.18
3028 6017 4.713792 ATGGGTCCTTTGTATGAGGATC 57.286 45.455 0.00 0.00 44.65 3.36
3029 6018 5.203528 CAAATGGGTCCTTTGTATGAGGAT 58.796 41.667 0.00 0.00 44.65 3.24
3030 6019 4.599041 CAAATGGGTCCTTTGTATGAGGA 58.401 43.478 0.00 0.00 40.93 3.71
3031 6020 3.131046 GCAAATGGGTCCTTTGTATGAGG 59.869 47.826 5.70 0.00 36.26 3.86
3032 6021 4.019174 AGCAAATGGGTCCTTTGTATGAG 58.981 43.478 5.70 0.00 36.26 2.90
3033 6022 4.046286 AGCAAATGGGTCCTTTGTATGA 57.954 40.909 5.70 0.00 36.26 2.15
3034 6023 4.806640 AAGCAAATGGGTCCTTTGTATG 57.193 40.909 5.70 0.40 36.26 2.39
3035 6024 5.957774 ACATAAGCAAATGGGTCCTTTGTAT 59.042 36.000 5.70 0.00 36.26 2.29
3036 6025 5.329399 ACATAAGCAAATGGGTCCTTTGTA 58.671 37.500 5.70 0.00 36.26 2.41
3037 6026 4.159557 ACATAAGCAAATGGGTCCTTTGT 58.840 39.130 5.70 0.00 36.26 2.83
3038 6027 4.806640 ACATAAGCAAATGGGTCCTTTG 57.193 40.909 3.68 0.23 36.81 2.77
3039 6028 7.617723 TGTATTACATAAGCAAATGGGTCCTTT 59.382 33.333 3.68 0.00 0.00 3.11
3040 6029 7.068226 GTGTATTACATAAGCAAATGGGTCCTT 59.932 37.037 0.00 0.00 0.00 3.36
3041 6030 6.546034 GTGTATTACATAAGCAAATGGGTCCT 59.454 38.462 0.00 0.00 0.00 3.85
3042 6031 6.238925 GGTGTATTACATAAGCAAATGGGTCC 60.239 42.308 0.00 0.00 0.00 4.46
3043 6032 6.320164 TGGTGTATTACATAAGCAAATGGGTC 59.680 38.462 0.00 0.00 0.00 4.46
3044 6033 6.096282 GTGGTGTATTACATAAGCAAATGGGT 59.904 38.462 0.00 0.00 0.00 4.51
3045 6034 6.096141 TGTGGTGTATTACATAAGCAAATGGG 59.904 38.462 0.00 0.00 0.00 4.00
3046 6035 7.094508 TGTGGTGTATTACATAAGCAAATGG 57.905 36.000 0.00 0.00 0.00 3.16
3047 6036 8.978564 TTTGTGGTGTATTACATAAGCAAATG 57.021 30.769 0.00 0.00 0.00 2.32
3048 6037 8.802267 ACTTTGTGGTGTATTACATAAGCAAAT 58.198 29.630 0.00 0.32 0.00 2.32
3049 6038 8.172352 ACTTTGTGGTGTATTACATAAGCAAA 57.828 30.769 0.00 8.53 0.00 3.68
3050 6039 7.753309 ACTTTGTGGTGTATTACATAAGCAA 57.247 32.000 0.00 1.86 0.00 3.91
3051 6040 7.229707 ACAACTTTGTGGTGTATTACATAAGCA 59.770 33.333 0.00 0.00 46.20 3.91
3052 6041 7.590279 ACAACTTTGTGGTGTATTACATAAGC 58.410 34.615 0.00 0.00 46.20 3.09
3056 6045 9.127277 AGTTTACAACTTTGTGGTGTATTACAT 57.873 29.630 4.82 0.00 46.88 2.29
3057 6046 8.508883 AGTTTACAACTTTGTGGTGTATTACA 57.491 30.769 4.82 0.00 46.88 2.41
3099 6088 8.840321 GCATGGACTGATGTAGTATAAATGTTT 58.160 33.333 0.00 0.00 40.53 2.83
3100 6089 7.992608 TGCATGGACTGATGTAGTATAAATGTT 59.007 33.333 0.00 0.00 40.53 2.71
3102 6091 7.360691 GCTGCATGGACTGATGTAGTATAAATG 60.361 40.741 0.00 0.00 40.53 2.32
3104 6093 5.991606 GCTGCATGGACTGATGTAGTATAAA 59.008 40.000 0.00 0.00 40.53 1.40
3106 6095 4.588528 TGCTGCATGGACTGATGTAGTATA 59.411 41.667 0.00 0.00 40.53 1.47
3107 6096 3.389002 TGCTGCATGGACTGATGTAGTAT 59.611 43.478 0.00 0.00 40.53 2.12
3108 6097 2.765699 TGCTGCATGGACTGATGTAGTA 59.234 45.455 0.00 0.00 40.53 1.82
3109 6098 1.556451 TGCTGCATGGACTGATGTAGT 59.444 47.619 0.00 0.00 44.02 2.73
3110 6099 2.320745 TGCTGCATGGACTGATGTAG 57.679 50.000 0.00 0.00 38.65 2.74
3111 6100 2.804212 CGATGCTGCATGGACTGATGTA 60.804 50.000 21.53 0.00 0.00 2.29
3113 6102 0.586802 CGATGCTGCATGGACTGATG 59.413 55.000 21.53 0.00 0.00 3.07
3115 6104 0.249955 TTCGATGCTGCATGGACTGA 59.750 50.000 24.09 9.70 28.92 3.41
3116 6105 2.771435 TTCGATGCTGCATGGACTG 58.229 52.632 24.09 7.73 28.92 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.