AutoCloner

Multiple sequence alignment - TraesCS2A01G421500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G421500	chr2A	100.000	3149	0	0	1	3149	677040417	677037269	0.000000e+00	5816
1	TraesCS2A01G421500	chr2A	91.403	1454	87	20	731	2176	677368808	677367385	0.000000e+00	1958
2	TraesCS2A01G421500	chr2A	85.317	1655	141	50	1559	3145	677172121	677170501	0.000000e+00	1616
3	TraesCS2A01G421500	chr2A	84.049	1235	113	43	1559	2725	677100847	677099629	0.000000e+00	1112
4	TraesCS2A01G421500	chr2A	85.482	861	90	19	1559	2398	677068906	677068060	0.000000e+00	865
5	TraesCS2A01G421500	chr2A	89.274	606	44	12	55	645	677173920	677173321	0.000000e+00	739
6	TraesCS2A01G421500	chr2A	86.054	631	46	15	34	645	677070713	677070106	9.520000e-180	640
7	TraesCS2A01G421500	chr2A	85.895	631	47	15	34	645	677102654	677102047	4.430000e-178	634
8	TraesCS2A01G421500	chr2A	86.491	607	41	14	58	645	677158696	677158112	2.060000e-176	628
9	TraesCS2A01G421500	chr2A	87.449	247	22	5	427	671	677224660	677224421	3.090000e-70	276
10	TraesCS2A01G421500	chr2D	90.985	2762	128	45	7	2699	532500832	532498123	0.000000e+00	3609
11	TraesCS2A01G421500	chr2D	92.371	1468	84	18	879	2326	533030040	533028581	0.000000e+00	2065
12	TraesCS2A01G421500	chr2D	85.439	1504	129	44	1559	2992	532606927	532605444	0.000000e+00	1482
13	TraesCS2A01G421500	chr2D	88.454	1048	67	22	455	1471	532608019	532606995	0.000000e+00	1216
14	TraesCS2A01G421500	chr2D	87.553	474	25	11	1	459	532608660	532608206	4.660000e-143	518
15	TraesCS2A01G421500	chr2B	85.310	2471	206	62	750	3149	632513689	632511305	0.000000e+00	2407
16	TraesCS2A01G421500	chr2B	92.629	814	45	7	1725	2525	632563812	632563001	0.000000e+00	1157
17	TraesCS2A01G421500	chr2B	84.175	1049	87	36	731	1729	632566762	632565743	0.000000e+00	944
18	TraesCS2A01G421500	chr2B	88.488	721	47	20	9	705	632514408	632513700	0.000000e+00	839
19	TraesCS2A01G421500	chrUn	85.419	1694	178	32	535	2204	183931094	183932742	0.000000e+00	1696
20	TraesCS2A01G421500	chrUn	85.292	1693	182	30	535	2204	25995831	25994183	0.000000e+00	1685
21	TraesCS2A01G421500	chrUn	85.233	1693	183	29	535	2204	255746718	255748366	0.000000e+00	1679
22	TraesCS2A01G421500	chrUn	85.115	1693	185	30	535	2204	253003580	253001932	0.000000e+00	1668
23	TraesCS2A01G421500	chrUn	85.115	1693	185	30	535	2204	318906324	318907972	0.000000e+00	1668
24	TraesCS2A01G421500	chrUn	84.431	1503	130	41	1559	2992	183904975	183906442	0.000000e+00	1384
25	TraesCS2A01G421500	chrUn	84.441	1504	127	47	1559	2992	304976523	304977989	0.000000e+00	1382
26	TraesCS2A01G421500	chrUn	84.375	1504	129	46	1559	2992	235134942	235133475	0.000000e+00	1378
27	TraesCS2A01G421500	chrUn	84.232	1503	133	41	1559	2992	240849414	240850881	0.000000e+00	1367
28	TraesCS2A01G421500	chrUn	84.232	1503	133	46	1559	2992	260028827	260030294	0.000000e+00	1367
29	TraesCS2A01G421500	chrUn	84.232	1503	133	46	1559	2992	279914879	279916346	0.000000e+00	1367
30	TraesCS2A01G421500	chrUn	88.392	1051	71	20	452	1471	183903877	183904907	0.000000e+00	1218
31	TraesCS2A01G421500	chrUn	88.297	1051	69	23	452	1471	240848319	240849346	0.000000e+00	1210
32	TraesCS2A01G421500	chrUn	88.286	1050	70	22	452	1471	260027733	260028759	0.000000e+00	1208
33	TraesCS2A01G421500	chrUn	88.179	1049	69	22	455	1471	235136035	235135010	0.000000e+00	1199
34	TraesCS2A01G421500	chrUn	88.292	1042	68	22	461	1471	277811102	277810084	0.000000e+00	1199
35	TraesCS2A01G421500	chrUn	88.179	1049	69	22	455	1471	395778302	395777277	0.000000e+00	1199
36	TraesCS2A01G421500	chrUn	88.793	812	50	15	452	1242	397613456	397614247	0.000000e+00	957
37	TraesCS2A01G421500	chrUn	83.380	1077	106	31	1559	2592	397127899	397128945	0.000000e+00	929
38	TraesCS2A01G421500	chrUn	83.287	1077	107	36	1559	2592	407757830	407758876	0.000000e+00	924
39	TraesCS2A01G421500	chrUn	82.750	829	57	34	2227	2992	403431424	403430619	0.000000e+00	660
40	TraesCS2A01G421500	chrUn	87.131	474	27	10	1	459	183903239	183903693	1.010000e-139	507
41	TraesCS2A01G421500	chrUn	87.131	474	27	10	1	459	235136676	235136222	1.010000e-139	507
42	TraesCS2A01G421500	chrUn	87.131	474	27	10	1	459	240847681	240848135	1.010000e-139	507
43	TraesCS2A01G421500	chrUn	87.131	474	27	10	1	459	260027095	260027549	1.010000e-139	507
44	TraesCS2A01G421500	chrUn	87.131	474	27	10	1	459	277811749	277811295	1.010000e-139	507
45	TraesCS2A01G421500	chrUn	87.131	474	27	10	1	459	362478340	362478794	1.010000e-139	507
46	TraesCS2A01G421500	chrUn	85.593	118	11	3	427	538	26076394	26076277	5.520000e-23	119
47	TraesCS2A01G421500	chrUn	85.593	118	11	3	427	538	226923882	226923999	5.520000e-23	119

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G421500	chr2A	677037269	677040417	3148	True	5816.000000	5816	100.000000	1	3149	1	chr2A.!!$R1	3148
1	TraesCS2A01G421500	chr2A	677367385	677368808	1423	True	1958.000000	1958	91.403000	731	2176	1	chr2A.!!$R4	1445
2	TraesCS2A01G421500	chr2A	677170501	677173920	3419	True	1177.500000	1616	87.295500	55	3145	2	chr2A.!!$R7	3090
3	TraesCS2A01G421500	chr2A	677099629	677102654	3025	True	873.000000	1112	84.972000	34	2725	2	chr2A.!!$R6	2691
4	TraesCS2A01G421500	chr2A	677068060	677070713	2653	True	752.500000	865	85.768000	34	2398	2	chr2A.!!$R5	2364
5	TraesCS2A01G421500	chr2A	677158112	677158696	584	True	628.000000	628	86.491000	58	645	1	chr2A.!!$R2	587
6	TraesCS2A01G421500	chr2D	532498123	532500832	2709	True	3609.000000	3609	90.985000	7	2699	1	chr2D.!!$R1	2692
7	TraesCS2A01G421500	chr2D	533028581	533030040	1459	True	2065.000000	2065	92.371000	879	2326	1	chr2D.!!$R2	1447
8	TraesCS2A01G421500	chr2D	532605444	532608660	3216	True	1072.000000	1482	87.148667	1	2992	3	chr2D.!!$R3	2991
9	TraesCS2A01G421500	chr2B	632511305	632514408	3103	True	1623.000000	2407	86.899000	9	3149	2	chr2B.!!$R1	3140
10	TraesCS2A01G421500	chr2B	632563001	632566762	3761	True	1050.500000	1157	88.402000	731	2525	2	chr2B.!!$R2	1794
11	TraesCS2A01G421500	chrUn	183931094	183932742	1648	False	1696.000000	1696	85.419000	535	2204	1	chrUn.!!$F1	1669
12	TraesCS2A01G421500	chrUn	25994183	25995831	1648	True	1685.000000	1685	85.292000	535	2204	1	chrUn.!!$R1	1669
13	TraesCS2A01G421500	chrUn	255746718	255748366	1648	False	1679.000000	1679	85.233000	535	2204	1	chrUn.!!$F3	1669
14	TraesCS2A01G421500	chrUn	253001932	253003580	1648	True	1668.000000	1668	85.115000	535	2204	1	chrUn.!!$R3	1669
15	TraesCS2A01G421500	chrUn	318906324	318907972	1648	False	1668.000000	1668	85.115000	535	2204	1	chrUn.!!$F6	1669
16	TraesCS2A01G421500	chrUn	304976523	304977989	1466	False	1382.000000	1382	84.441000	1559	2992	1	chrUn.!!$F5	1433
17	TraesCS2A01G421500	chrUn	279914879	279916346	1467	False	1367.000000	1367	84.232000	1559	2992	1	chrUn.!!$F4	1433
18	TraesCS2A01G421500	chrUn	395777277	395778302	1025	True	1199.000000	1199	88.179000	455	1471	1	chrUn.!!$R4	1016
19	TraesCS2A01G421500	chrUn	183903239	183906442	3203	False	1036.333333	1384	86.651333	1	2992	3	chrUn.!!$F11	2991
20	TraesCS2A01G421500	chrUn	235133475	235136676	3201	True	1028.000000	1378	86.561667	1	2992	3	chrUn.!!$R6	2991
21	TraesCS2A01G421500	chrUn	240847681	240850881	3200	False	1028.000000	1367	86.553333	1	2992	3	chrUn.!!$F12	2991
22	TraesCS2A01G421500	chrUn	260027095	260030294	3199	False	1027.333333	1367	86.549667	1	2992	3	chrUn.!!$F13	2991
23	TraesCS2A01G421500	chrUn	397613456	397614247	791	False	957.000000	957	88.793000	452	1242	1	chrUn.!!$F9	790
24	TraesCS2A01G421500	chrUn	397127899	397128945	1046	False	929.000000	929	83.380000	1559	2592	1	chrUn.!!$F8	1033
25	TraesCS2A01G421500	chrUn	407757830	407758876	1046	False	924.000000	924	83.287000	1559	2592	1	chrUn.!!$F10	1033
26	TraesCS2A01G421500	chrUn	277810084	277811749	1665	True	853.000000	1199	87.711500	1	1471	2	chrUn.!!$R7	1470
27	TraesCS2A01G421500	chrUn	403430619	403431424	805	True	660.000000	660	82.750000	2227	2992	1	chrUn.!!$R5	765

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
934	1642	0.676782	GGCAGCATGGTTCCTACGTT	60.677	55.0	6.31	0.0	35.86	3.99	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2780	5665	0.390603	CCGGACAAGACGCAATACCA	60.391	55.0	0.0	0.0	0.0	3.25	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	46	9.729023	AAAAGAAAGACCAAACAAAACAAAAAG	57.271	25.926	0.00	0.00	0.00	2.27
47	50	8.445275	AAAGACCAAACAAAACAAAAAGAAGT	57.555	26.923	0.00	0.00	0.00	3.01
76	79	1.478510	ACCAGACTAAGAGGATGCACG	59.521	52.381	0.00	0.00	0.00	5.34
87	90	2.670414	GAGGATGCACGACAAGAAGAAG	59.330	50.000	0.00	0.00	0.00	2.85
88	91	2.300152	AGGATGCACGACAAGAAGAAGA	59.700	45.455	0.00	0.00	0.00	2.87
146	150	1.002142	GTTGTTTGTAGCGGGTGGAAC	60.002	52.381	0.00	0.00	0.00	3.62
151	155	1.219935	GTAGCGGGTGGAACGGATT	59.780	57.895	0.00	0.00	38.12	3.01
192	196	7.558161	TGAATTCTACTTCATGCACCTATTG	57.442	36.000	7.05	0.00	30.34	1.90
208	213	7.708752	TGCACCTATTGTTTGAAGGTTAAAAAG	59.291	33.333	0.00	0.00	41.75	2.27
210	215	9.463443	CACCTATTGTTTGAAGGTTAAAAAGAG	57.537	33.333	0.00	0.00	41.75	2.85
239	244	2.443416	ACACTACTCCATGTACAGCGA	58.557	47.619	0.33	0.00	0.00	4.93
240	245	2.423892	ACACTACTCCATGTACAGCGAG	59.576	50.000	16.60	16.60	0.00	5.03
339	360	1.338769	GCGGGAGTGTACCAAATCAGT	60.339	52.381	0.00	0.00	0.00	3.41
453	667	2.219216	CCGTGCACATTTTCTTGCTTTG	59.781	45.455	18.64	0.00	39.62	2.77
580	990	6.014070	ACCACATACATCGGCCAAACTATATA	60.014	38.462	2.24	0.00	0.00	0.86
581	991	7.047891	CCACATACATCGGCCAAACTATATAT	58.952	38.462	2.24	0.00	0.00	0.86
583	993	7.011389	CACATACATCGGCCAAACTATATATGG	59.989	40.741	2.24	0.00	37.29	2.74
587	997	4.422057	TCGGCCAAACTATATATGGGAGA	58.578	43.478	2.24	0.00	34.71	3.71
588	998	4.466370	TCGGCCAAACTATATATGGGAGAG	59.534	45.833	2.24	0.00	34.71	3.20
612	1023	4.234019	CCGATCCGGCCATTTTCA	57.766	55.556	2.24	0.00	41.17	2.69
705	1391	0.748005	CGCCATCGGGGAAACAAGAT	60.748	55.000	0.00	0.00	40.01	2.40
839	1537	3.259751	GTATGAACGCCCGCGGAC	61.260	66.667	30.73	16.23	44.69	4.79
934	1642	0.676782	GGCAGCATGGTTCCTACGTT	60.677	55.000	6.31	0.00	35.86	3.99
1047	1788	3.279116	GACGGCACACTGCTTGCA	61.279	61.111	3.80	0.00	44.28	4.08
1236	1977	0.983467	TAGATGCTGTCAACAGGGCA	59.017	50.000	11.87	5.97	43.94	5.36
2082	4838	2.897350	GGCTACATGCGCCTCACC	60.897	66.667	16.99	0.00	44.17	4.02
2141	4897	2.104967	CTACTACCCGACCATGGACAA	58.895	52.381	21.47	0.00	0.00	3.18
2177	4943	4.636648	AGTACTACTTCATCAGTCAGTCCG	59.363	45.833	0.00	0.00	36.88	4.79
2187	4953	0.897621	AGTCAGTCCGTGCATCATCA	59.102	50.000	0.00	0.00	0.00	3.07
2210	4987	7.338710	TCAAGTATGGTTTATCAGCTAAGCTT	58.661	34.615	3.48	3.48	36.40	3.74
2389	5195	1.938577	CTACATCAGTCCATGCAGCAC	59.061	52.381	0.00	0.00	0.00	4.40
2592	5445	3.389925	AACGGACGTTCCTCAATGTTA	57.610	42.857	3.99	0.00	33.30	2.41
2593	5446	2.955614	ACGGACGTTCCTCAATGTTAG	58.044	47.619	0.00	0.00	33.30	2.34
2594	5447	2.268298	CGGACGTTCCTCAATGTTAGG	58.732	52.381	0.00	0.00	33.30	2.69
2617	5493	1.757118	CTCATGCCGGTTCTTCTCCTA	59.243	52.381	1.90	0.00	0.00	2.94
2631	5507	2.531771	TCTCCTATCACAACCCGACAA	58.468	47.619	0.00	0.00	0.00	3.18
2678	5561	5.538813	TCGTATTACCTCATTACAGGAGCAT	59.461	40.000	0.00	0.00	36.96	3.79
2679	5562	6.041637	TCGTATTACCTCATTACAGGAGCATT	59.958	38.462	0.00	0.00	36.96	3.56
2680	5563	6.706270	CGTATTACCTCATTACAGGAGCATTT	59.294	38.462	0.00	0.00	36.96	2.32
2719	5603	2.218759	CGATAGGCTACGTTGCAACATC	59.781	50.000	28.01	18.96	34.04	3.06
2868	5753	3.220773	GCGTGCAATCGATAATCATGTG	58.779	45.455	0.00	0.00	0.00	3.21
2885	5770	2.608467	GTGCACTCACATGAGCTTTC	57.392	50.000	10.32	0.00	45.79	2.62
2893	5778	2.751259	TCACATGAGCTTTCCTGAATGC	59.249	45.455	0.00	9.12	40.49	3.56
2914	5799	4.984161	TGCTTCTTTTAGTTGCATTGCTTC	59.016	37.500	10.49	3.08	0.00	3.86
2928	5813	5.221362	TGCATTGCTTCATGAATTGATAGGG	60.221	40.000	8.96	0.00	33.34	3.53
2971	5856	6.183360	TGTCACATACATATGCCAAAATGCAT	60.183	34.615	1.58	0.00	43.18	3.96
3092	5977	2.695359	ACATTAACTAGTGCCACACCG	58.305	47.619	0.00	0.00	34.49	4.94
3111	5996	7.221838	CCACACCGGTGCAATATAAATTTAAAG	59.778	37.037	34.26	4.30	43.88	1.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
5	6	8.710835	TTGGTCTTTCTTTTGGTTTTATTCAC	57.289	30.769	0.00	0.00	0.00	3.18
21	23	8.556194	ACTTCTTTTTGTTTTGTTTGGTCTTTC	58.444	29.630	0.00	0.00	0.00	2.62
43	46	8.722394	CCTCTTAGTCTGGTTTCATTTTACTTC	58.278	37.037	0.00	0.00	0.00	3.01
47	50	7.336931	GCATCCTCTTAGTCTGGTTTCATTTTA	59.663	37.037	0.00	0.00	0.00	1.52
52	55	3.582647	TGCATCCTCTTAGTCTGGTTTCA	59.417	43.478	0.00	0.00	0.00	2.69
87	90	8.865590	TTGTTGTGCCTAATTACTTCTTTTTC	57.134	30.769	0.00	0.00	0.00	2.29
88	91	8.474831	ACTTGTTGTGCCTAATTACTTCTTTTT	58.525	29.630	0.00	0.00	0.00	1.94
123	126	1.588674	CACCCGCTACAAACAACTGA	58.411	50.000	0.00	0.00	0.00	3.41
130	134	1.301874	CCGTTCCACCCGCTACAAA	60.302	57.895	0.00	0.00	0.00	2.83
146	150	3.059352	ACTCCAAACCTCTTGAATCCG	57.941	47.619	0.00	0.00	0.00	4.18
151	155	6.129179	AGAATTCAAACTCCAAACCTCTTGA	58.871	36.000	8.44	0.00	0.00	3.02
208	213	6.879400	ACATGGAGTAGTGTTTATCTTCCTC	58.121	40.000	0.00	0.00	0.00	3.71
210	215	7.553334	TGTACATGGAGTAGTGTTTATCTTCC	58.447	38.462	0.00	0.00	32.19	3.46
270	291	5.684030	GCCCATACCTCTTCATAAGAAACGA	60.684	44.000	0.00	0.00	37.02	3.85
272	293	5.685728	AGCCCATACCTCTTCATAAGAAAC	58.314	41.667	0.00	0.00	37.02	2.78
580	990	4.457496	CGGCGTGCACTCTCCCAT	62.457	66.667	16.19	0.00	0.00	4.00
583	993	2.583593	GATCGGCGTGCACTCTCC	60.584	66.667	16.19	11.95	0.00	3.71
607	1018	1.680735	ACGTTGCTGCCTGATTGAAAA	59.319	42.857	0.00	0.00	0.00	2.29
612	1023	2.233922	AGTAGTACGTTGCTGCCTGATT	59.766	45.455	0.00	0.00	0.00	2.57
658	1344	5.420725	AAGTGCTCTGTCCACATGTATAA	57.579	39.130	0.00	0.00	35.69	0.98
662	1348	2.224606	CAAAGTGCTCTGTCCACATGT	58.775	47.619	0.00	0.00	35.69	3.21
713	1399	9.974980	TCTTCTTCTTTCTTCTTCTACTTCTTC	57.025	33.333	0.00	0.00	0.00	2.87
839	1537	3.173668	TCCATACTTTTCGTCGATGGG	57.826	47.619	4.48	0.00	38.09	4.00
934	1642	2.446285	GCTAGGGAGGGAGGTACTAAGA	59.554	54.545	0.00	0.00	41.55	2.10
1047	1788	1.372251	CACGAGCACGAGCAGAAGT	60.372	57.895	11.40	0.00	45.49	3.01
1125	1866	3.626996	CTTGGCCATCCACCGCTCA	62.627	63.158	6.09	0.00	43.33	4.26
1236	1977	0.172803	GAGTGTACGTCCGATTGCCT	59.827	55.000	0.00	0.00	0.00	4.75
1356	2109	1.073603	TGAGCCATGGACATGTTCACA	59.926	47.619	18.40	5.10	37.11	3.58
1675	2487	0.179137	TCGTTGATGTAGCCGCTCTG	60.179	55.000	0.00	0.00	0.00	3.35
1823	4576	1.071471	CCGTTCAGGCTCACCAACT	59.929	57.895	0.00	0.00	39.06	3.16
2141	4897	7.592885	TGAAGTAGTACTGGTGTTTAAGAGT	57.407	36.000	5.39	0.00	0.00	3.24
2177	4943	7.263100	TGATAAACCATACTTGATGATGCAC	57.737	36.000	0.00	0.00	37.82	4.57
2187	4953	9.110502	GTAAAGCTTAGCTGATAAACCATACTT	57.889	33.333	7.77	0.00	39.62	2.24
2210	4987	6.702723	GCATGGTATTCAGGTATTGTACGTAA	59.297	38.462	0.00	0.00	0.00	3.18
2273	5060	5.973565	CGAGGATCCATGCTTTATTCAAAAC	59.026	40.000	15.82	0.00	0.00	2.43
2389	5195	0.530744	TGTAGCTAGCCAACACTCGG	59.469	55.000	12.13	0.00	0.00	4.63
2563	5416	2.546789	AGGAACGTCCGTTTCATTGAAC	59.453	45.455	12.94	0.00	42.75	3.18
2592	5445	0.693049	AAGAACCGGCATGAGAACCT	59.307	50.000	0.00	0.00	0.00	3.50
2593	5446	1.087501	GAAGAACCGGCATGAGAACC	58.912	55.000	0.00	0.00	0.00	3.62
2594	5447	2.003301	GAGAAGAACCGGCATGAGAAC	58.997	52.381	0.00	0.00	0.00	3.01
2617	5493	3.305335	GCAGATTTTTGTCGGGTTGTGAT	60.305	43.478	0.00	0.00	0.00	3.06
2631	5507	7.281774	ACGAGACAAATAGATGATGCAGATTTT	59.718	33.333	0.00	0.00	0.00	1.82
2719	5603	0.462047	GTTCAGTAGCCGGTCCCATG	60.462	60.000	1.90	0.00	0.00	3.66
2780	5665	0.390603	CCGGACAAGACGCAATACCA	60.391	55.000	0.00	0.00	0.00	3.25
2868	5753	1.467734	CAGGAAAGCTCATGTGAGTGC	59.532	52.381	11.35	0.00	43.85	4.40
2893	5778	6.864685	TCATGAAGCAATGCAACTAAAAGAAG	59.135	34.615	8.35	0.00	0.00	2.85
2896	5781	7.591006	ATTCATGAAGCAATGCAACTAAAAG	57.409	32.000	14.54	0.00	0.00	2.27
2914	5799	7.591165	CACTCAAATAGCCCTATCAATTCATG	58.409	38.462	0.00	0.00	0.00	3.07
2928	5813	3.181494	TGACATGCATGCACTCAAATAGC	60.181	43.478	25.37	5.68	0.00	2.97
3014	5899	8.217131	AGTGACGACCTACTAAAAACATTTTT	57.783	30.769	7.44	7.44	42.51	1.94
3015	5900	7.797038	AGTGACGACCTACTAAAAACATTTT	57.203	32.000	0.00	0.00	0.00	1.82
3019	5904	9.979578	TTTTATAGTGACGACCTACTAAAAACA	57.020	29.630	0.00	0.00	33.52	2.83
3085	5970	4.647424	AATTTATATTGCACCGGTGTGG	57.353	40.909	33.92	11.47	42.99	4.17

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.