Multiple sequence alignment - TraesCS2A01G420800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G420800 chr2A 100.000 5978 0 0 1 5978 676388361 676382384 0.000000e+00 11040.0
1 TraesCS2A01G420800 chr2D 91.930 5911 298 84 144 5978 531934828 531929021 0.000000e+00 8107.0
2 TraesCS2A01G420800 chr2B 93.858 2654 111 24 2161 4781 631725912 631723278 0.000000e+00 3951.0
3 TraesCS2A01G420800 chr2B 83.995 781 67 31 738 1478 631727305 631726543 0.000000e+00 697.0
4 TraesCS2A01G420800 chr2B 85.781 640 53 17 4785 5420 631723107 631722502 1.400000e-180 643.0
5 TraesCS2A01G420800 chr2B 87.931 522 18 20 5458 5977 631722499 631722021 1.870000e-159 573.0
6 TraesCS2A01G420800 chr2B 85.303 347 41 8 1759 2101 631726245 631725905 3.430000e-92 350.0
7 TraesCS2A01G420800 chr1B 86.316 95 8 4 1 94 470724928 470725018 1.370000e-16 99.0
8 TraesCS2A01G420800 chr3A 88.732 71 3 4 7 77 737540955 737540890 1.380000e-11 82.4
9 TraesCS2A01G420800 chr6A 91.667 48 3 1 31 77 33586133 33586086 1.390000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G420800 chr2A 676382384 676388361 5977 True 11040.0 11040 100.0000 1 5978 1 chr2A.!!$R1 5977
1 TraesCS2A01G420800 chr2D 531929021 531934828 5807 True 8107.0 8107 91.9300 144 5978 1 chr2D.!!$R1 5834
2 TraesCS2A01G420800 chr2B 631722021 631727305 5284 True 1242.8 3951 87.3736 738 5977 5 chr2B.!!$R1 5239

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
885 914 0.389426 GCACGAGGAGGAAGCGTTAA 60.389 55.000 0.0 0.00 35.90 2.01 F
1223 1287 0.249657 GATGTCGGTGCTGGAGGATC 60.250 60.000 0.0 0.00 0.00 3.36 F
1667 1738 1.001378 GCAGCTTGTGTGGTTTGGTAG 60.001 52.381 0.0 0.00 0.00 3.18 F
1900 2018 1.269778 GGAGCAGGCAAAACTGTTTCC 60.270 52.381 6.2 4.65 40.59 3.13 F
2808 2982 1.412079 TGCTGCACCATTTCAAGGTT 58.588 45.000 0.0 0.00 37.23 3.50 F
4434 4612 0.391130 TGTTCCGCATAGTCCAGCAC 60.391 55.000 0.0 0.00 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2411 2581 1.037493 TACACCTACTAGCATGGCCG 58.963 55.000 0.00 0.00 0.00 6.13 R
2508 2681 2.611473 CGAAAGCCTGCAGAGAAGAAGA 60.611 50.000 17.39 0.00 0.00 2.87 R
2897 3071 2.789409 ACAGGTATCAAGCTTCCACC 57.211 50.000 11.17 11.17 0.00 4.61 R
3817 3991 1.002888 AGGCAGACAACATCCAGTCAG 59.997 52.381 0.00 0.00 37.23 3.51 R
4542 4720 0.609681 AGTCCTCCCTGACTGACGTC 60.610 60.000 9.11 9.11 43.80 4.34 R
5318 5661 0.039618 ATTGCTGTTCCCCGGATGTT 59.960 50.000 0.73 0.00 0.00 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 8.432110 AAAAATAGACCACAAACAAAATGGAC 57.568 30.769 0.00 0.00 36.94 4.02
59 60 6.723298 AATAGACCACAAACAAAATGGACA 57.277 33.333 0.00 0.00 36.94 4.02
60 61 6.916360 ATAGACCACAAACAAAATGGACAT 57.084 33.333 0.00 0.00 36.94 3.06
61 62 5.200368 AGACCACAAACAAAATGGACATC 57.800 39.130 0.00 0.00 36.94 3.06
62 63 4.648762 AGACCACAAACAAAATGGACATCA 59.351 37.500 0.00 0.00 36.94 3.07
63 64 4.947645 ACCACAAACAAAATGGACATCAG 58.052 39.130 0.00 0.00 36.94 2.90
64 65 3.742369 CCACAAACAAAATGGACATCAGC 59.258 43.478 0.00 0.00 35.33 4.26
65 66 4.501915 CCACAAACAAAATGGACATCAGCT 60.502 41.667 0.00 0.00 35.33 4.24
66 67 5.051816 CACAAACAAAATGGACATCAGCTT 58.948 37.500 0.00 0.00 0.00 3.74
67 68 6.215121 CACAAACAAAATGGACATCAGCTTA 58.785 36.000 0.00 0.00 0.00 3.09
68 69 6.364165 CACAAACAAAATGGACATCAGCTTAG 59.636 38.462 0.00 0.00 0.00 2.18
69 70 6.265196 ACAAACAAAATGGACATCAGCTTAGA 59.735 34.615 0.00 0.00 0.00 2.10
70 71 7.039504 ACAAACAAAATGGACATCAGCTTAGAT 60.040 33.333 0.00 0.00 0.00 1.98
80 81 4.502016 CATCAGCTTAGATGTGACACTGT 58.498 43.478 7.20 0.00 40.35 3.55
81 82 4.179926 TCAGCTTAGATGTGACACTGTC 57.820 45.455 7.20 1.86 0.00 3.51
82 83 3.056536 TCAGCTTAGATGTGACACTGTCC 60.057 47.826 7.20 0.00 0.00 4.02
83 84 3.056250 CAGCTTAGATGTGACACTGTCCT 60.056 47.826 7.20 0.00 0.00 3.85
84 85 4.158579 CAGCTTAGATGTGACACTGTCCTA 59.841 45.833 7.20 0.00 0.00 2.94
85 86 4.400884 AGCTTAGATGTGACACTGTCCTAG 59.599 45.833 7.20 6.64 0.00 3.02
86 87 4.399618 GCTTAGATGTGACACTGTCCTAGA 59.600 45.833 7.20 0.00 0.00 2.43
87 88 5.677598 GCTTAGATGTGACACTGTCCTAGAC 60.678 48.000 7.20 0.00 0.00 2.59
88 89 3.767711 AGATGTGACACTGTCCTAGACA 58.232 45.455 7.20 4.82 40.50 3.41
99 100 2.038557 TGTCCTAGACAGACCCTTTTGC 59.961 50.000 0.00 0.00 37.67 3.68
100 101 2.038557 GTCCTAGACAGACCCTTTTGCA 59.961 50.000 0.00 0.00 32.09 4.08
101 102 2.708861 TCCTAGACAGACCCTTTTGCAA 59.291 45.455 0.00 0.00 0.00 4.08
102 103 3.137544 TCCTAGACAGACCCTTTTGCAAA 59.862 43.478 8.05 8.05 0.00 3.68
103 104 3.888930 CCTAGACAGACCCTTTTGCAAAA 59.111 43.478 22.61 22.61 0.00 2.44
104 105 4.524328 CCTAGACAGACCCTTTTGCAAAAT 59.476 41.667 24.06 10.55 0.00 1.82
105 106 4.590850 AGACAGACCCTTTTGCAAAATC 57.409 40.909 24.06 18.31 0.00 2.17
106 107 4.218312 AGACAGACCCTTTTGCAAAATCT 58.782 39.130 24.06 20.10 0.00 2.40
107 108 4.038402 AGACAGACCCTTTTGCAAAATCTG 59.962 41.667 32.72 32.72 37.99 2.90
108 109 3.070015 ACAGACCCTTTTGCAAAATCTGG 59.930 43.478 34.89 29.48 37.08 3.86
109 110 3.321682 CAGACCCTTTTGCAAAATCTGGA 59.678 43.478 29.76 11.09 32.73 3.86
110 111 3.321968 AGACCCTTTTGCAAAATCTGGAC 59.678 43.478 28.14 23.91 0.00 4.02
111 112 3.037549 ACCCTTTTGCAAAATCTGGACA 58.962 40.909 28.14 8.48 0.00 4.02
112 113 3.454082 ACCCTTTTGCAAAATCTGGACAA 59.546 39.130 28.14 7.89 0.00 3.18
113 114 4.080638 ACCCTTTTGCAAAATCTGGACAAA 60.081 37.500 28.14 7.29 0.00 2.83
114 115 5.065235 CCCTTTTGCAAAATCTGGACAAAT 58.935 37.500 24.06 0.00 30.95 2.32
115 116 5.049267 CCCTTTTGCAAAATCTGGACAAATG 60.049 40.000 24.06 8.46 30.95 2.32
116 117 5.528320 CCTTTTGCAAAATCTGGACAAATGT 59.472 36.000 24.06 0.00 30.95 2.71
117 118 6.293027 CCTTTTGCAAAATCTGGACAAATGTC 60.293 38.462 24.06 4.96 44.04 3.06
118 119 4.933505 TGCAAAATCTGGACAAATGTCA 57.066 36.364 14.93 1.59 46.47 3.58
119 120 4.619973 TGCAAAATCTGGACAAATGTCAC 58.380 39.130 14.93 5.67 46.47 3.67
120 121 4.341806 TGCAAAATCTGGACAAATGTCACT 59.658 37.500 14.93 0.00 46.47 3.41
121 122 5.534278 TGCAAAATCTGGACAAATGTCACTA 59.466 36.000 14.93 0.46 46.47 2.74
122 123 6.088824 GCAAAATCTGGACAAATGTCACTAG 58.911 40.000 14.93 9.74 46.47 2.57
123 124 5.886960 AAATCTGGACAAATGTCACTAGC 57.113 39.130 14.93 0.00 46.47 3.42
124 125 4.833478 ATCTGGACAAATGTCACTAGCT 57.167 40.909 14.93 0.00 46.47 3.32
125 126 4.193826 TCTGGACAAATGTCACTAGCTC 57.806 45.455 14.93 0.00 46.47 4.09
126 127 3.055819 TCTGGACAAATGTCACTAGCTCC 60.056 47.826 14.93 0.00 46.47 4.70
127 128 2.637382 TGGACAAATGTCACTAGCTCCA 59.363 45.455 14.93 0.00 46.47 3.86
128 129 3.072330 TGGACAAATGTCACTAGCTCCAA 59.928 43.478 14.93 0.00 46.47 3.53
129 130 4.072131 GGACAAATGTCACTAGCTCCAAA 58.928 43.478 14.93 0.00 46.47 3.28
130 131 4.518970 GGACAAATGTCACTAGCTCCAAAA 59.481 41.667 14.93 0.00 46.47 2.44
131 132 5.183904 GGACAAATGTCACTAGCTCCAAAAT 59.816 40.000 14.93 0.00 46.47 1.82
132 133 6.259550 ACAAATGTCACTAGCTCCAAAATC 57.740 37.500 0.00 0.00 0.00 2.17
133 134 5.769662 ACAAATGTCACTAGCTCCAAAATCA 59.230 36.000 0.00 0.00 0.00 2.57
134 135 6.265196 ACAAATGTCACTAGCTCCAAAATCAA 59.735 34.615 0.00 0.00 0.00 2.57
135 136 7.039504 ACAAATGTCACTAGCTCCAAAATCAAT 60.040 33.333 0.00 0.00 0.00 2.57
136 137 7.472334 AATGTCACTAGCTCCAAAATCAATT 57.528 32.000 0.00 0.00 0.00 2.32
137 138 8.579850 AATGTCACTAGCTCCAAAATCAATTA 57.420 30.769 0.00 0.00 0.00 1.40
138 139 7.615582 TGTCACTAGCTCCAAAATCAATTAG 57.384 36.000 0.00 0.00 0.00 1.73
139 140 7.394016 TGTCACTAGCTCCAAAATCAATTAGA 58.606 34.615 0.00 0.00 0.00 2.10
140 141 7.334421 TGTCACTAGCTCCAAAATCAATTAGAC 59.666 37.037 0.00 0.00 0.00 2.59
141 142 7.550906 GTCACTAGCTCCAAAATCAATTAGACT 59.449 37.037 0.00 0.00 0.00 3.24
142 143 8.758829 TCACTAGCTCCAAAATCAATTAGACTA 58.241 33.333 0.00 0.00 0.00 2.59
149 150 6.821665 TCCAAAATCAATTAGACTAACCTCCG 59.178 38.462 0.00 0.00 0.00 4.63
150 151 6.598064 CCAAAATCAATTAGACTAACCTCCGT 59.402 38.462 0.00 0.00 0.00 4.69
166 167 5.476614 ACCTCCGTTCAAGAATACACTAAC 58.523 41.667 0.00 0.00 0.00 2.34
180 181 9.561069 AGAATACACTAACAAAGACAGTCAAAT 57.439 29.630 2.66 0.00 0.00 2.32
184 185 6.982141 ACACTAACAAAGACAGTCAAATACGA 59.018 34.615 2.66 0.00 0.00 3.43
192 193 5.931532 AGACAGTCAAATACGAAAATGCTG 58.068 37.500 2.66 0.00 0.00 4.41
206 207 1.681076 TGCTGAATGGAGCTCTGCA 59.319 52.632 14.64 11.44 43.05 4.41
233 234 9.334947 TCCATAGAGACTGAATTTGAAATGATC 57.665 33.333 0.00 0.00 0.00 2.92
388 389 6.040166 GCAATATTCATCCTCAAAGTCCATGT 59.960 38.462 0.00 0.00 0.00 3.21
439 460 6.204359 GCATTTCATACACATCACATCCTTC 58.796 40.000 0.00 0.00 0.00 3.46
444 465 9.764363 TTTCATACACATCACATCCTTCTATAC 57.236 33.333 0.00 0.00 0.00 1.47
445 466 8.477419 TCATACACATCACATCCTTCTATACA 57.523 34.615 0.00 0.00 0.00 2.29
453 474 8.982685 CATCACATCCTTCTATACATGTACAAC 58.017 37.037 7.96 0.00 0.00 3.32
456 477 9.383519 CACATCCTTCTATACATGTACAACTTT 57.616 33.333 7.96 0.00 0.00 2.66
510 532 9.766277 TTGAACTTTGATTTTTCAAAAATTCCG 57.234 25.926 9.50 2.53 38.87 4.30
511 533 8.394121 TGAACTTTGATTTTTCAAAAATTCCGG 58.606 29.630 9.50 0.00 38.87 5.14
512 534 7.857734 ACTTTGATTTTTCAAAAATTCCGGT 57.142 28.000 9.50 4.92 38.87 5.28
513 535 7.915508 ACTTTGATTTTTCAAAAATTCCGGTC 58.084 30.769 9.50 0.00 38.87 4.79
514 536 7.768582 ACTTTGATTTTTCAAAAATTCCGGTCT 59.231 29.630 9.50 0.00 38.87 3.85
515 537 7.707774 TTGATTTTTCAAAAATTCCGGTCTC 57.292 32.000 9.50 0.00 30.95 3.36
516 538 6.810911 TGATTTTTCAAAAATTCCGGTCTCA 58.189 32.000 9.50 0.00 30.95 3.27
517 539 7.268586 TGATTTTTCAAAAATTCCGGTCTCAA 58.731 30.769 9.50 0.00 30.95 3.02
518 540 6.895607 TTTTTCAAAAATTCCGGTCTCAAC 57.104 33.333 0.00 0.00 0.00 3.18
519 541 3.889196 TCAAAAATTCCGGTCTCAACG 57.111 42.857 0.00 0.00 0.00 4.10
520 542 3.468770 TCAAAAATTCCGGTCTCAACGA 58.531 40.909 0.00 0.00 0.00 3.85
521 543 3.878103 TCAAAAATTCCGGTCTCAACGAA 59.122 39.130 0.00 0.00 0.00 3.85
522 544 4.024387 TCAAAAATTCCGGTCTCAACGAAG 60.024 41.667 0.00 0.00 0.00 3.79
523 545 2.094762 AATTCCGGTCTCAACGAAGG 57.905 50.000 0.00 0.00 0.00 3.46
524 546 0.391263 ATTCCGGTCTCAACGAAGGC 60.391 55.000 0.00 0.00 0.00 4.35
525 547 2.434359 CCGGTCTCAACGAAGGCC 60.434 66.667 0.00 0.00 37.70 5.19
722 744 1.025812 CTATGTTCTCGCGAGTCCCT 58.974 55.000 33.33 19.76 0.00 4.20
784 808 4.345962 TCGTACCACACCGCACGG 62.346 66.667 7.71 7.71 42.03 4.94
798 822 3.467226 ACGGCCCTACATCCCACG 61.467 66.667 0.00 0.00 0.00 4.94
845 870 2.789409 ACCCCTGTCAGTGAAATAGC 57.211 50.000 0.00 0.00 0.00 2.97
848 873 2.636830 CCCTGTCAGTGAAATAGCAGG 58.363 52.381 16.33 16.33 42.11 4.85
885 914 0.389426 GCACGAGGAGGAAGCGTTAA 60.389 55.000 0.00 0.00 35.90 2.01
914 943 2.203972 TACTTCCCGTCCGTTCGCTG 62.204 60.000 0.00 0.00 0.00 5.18
918 947 2.248835 CCCGTCCGTTCGCTGTTTT 61.249 57.895 0.00 0.00 0.00 2.43
1006 1043 2.491022 CGTCCAAACCCGGGCAAAA 61.491 57.895 24.08 0.00 0.00 2.44
1171 1222 2.399356 GGGGCTTGAGCGTGCTTAC 61.399 63.158 0.00 0.00 43.26 2.34
1223 1287 0.249657 GATGTCGGTGCTGGAGGATC 60.250 60.000 0.00 0.00 0.00 3.36
1330 1394 2.031163 GGCATCGGCGGCTCTATT 59.969 61.111 7.21 0.00 42.47 1.73
1438 1502 2.456119 GCAGTTCGATGCCTCCACG 61.456 63.158 0.00 0.00 40.43 4.94
1480 1544 5.241949 TCTTACTTCCTTGTCTCTGTCTGTC 59.758 44.000 0.00 0.00 0.00 3.51
1495 1559 1.973515 TCTGTCACCTGCTGAATGAGT 59.026 47.619 0.00 0.00 0.00 3.41
1581 1645 6.969993 AAGTAAGCAAACAATGAAGGGTAA 57.030 33.333 0.00 0.00 0.00 2.85
1667 1738 1.001378 GCAGCTTGTGTGGTTTGGTAG 60.001 52.381 0.00 0.00 0.00 3.18
1691 1763 4.060900 CACTTGCAATATCGGCATACTCT 58.939 43.478 0.00 0.00 41.58 3.24
1731 1803 8.761575 TTTCGTTACGTTTGGATTAGTTATCT 57.238 30.769 4.24 0.00 33.53 1.98
1750 1822 3.816994 TCTGAGCAGCTCGTAGGTATTA 58.183 45.455 17.81 0.00 32.35 0.98
1751 1823 3.815962 TCTGAGCAGCTCGTAGGTATTAG 59.184 47.826 17.81 6.13 32.35 1.73
1754 1826 3.552875 AGCAGCTCGTAGGTATTAGACA 58.447 45.455 0.00 0.00 0.00 3.41
1757 1872 5.181622 AGCAGCTCGTAGGTATTAGACATAC 59.818 44.000 0.00 0.00 41.05 2.39
1766 1881 8.404000 CGTAGGTATTAGACATACAGTGACTTT 58.596 37.037 0.00 0.00 43.97 2.66
1787 1902 2.223144 TCATTGAAAAACTGCCGACTCG 59.777 45.455 0.00 0.00 0.00 4.18
1788 1903 1.658994 TTGAAAAACTGCCGACTCGT 58.341 45.000 0.00 0.00 0.00 4.18
1789 1904 2.512485 TGAAAAACTGCCGACTCGTA 57.488 45.000 0.00 0.00 0.00 3.43
1805 1923 3.071167 ACTCGTAAGGCTTGTTCCTTCTT 59.929 43.478 10.69 0.00 44.83 2.52
1808 1926 3.564225 CGTAAGGCTTGTTCCTTCTTGTT 59.436 43.478 10.69 0.00 44.83 2.83
1818 1936 6.012658 TGTTCCTTCTTGTTGCATGTTATC 57.987 37.500 0.00 0.00 0.00 1.75
1900 2018 1.269778 GGAGCAGGCAAAACTGTTTCC 60.270 52.381 6.20 4.65 40.59 3.13
1917 2035 5.309638 TGTTTCCGTGGATGAGAAAATACA 58.690 37.500 0.00 0.00 31.71 2.29
2070 2189 4.180057 GTCTCAGGCAGTCAGAACAATAG 58.820 47.826 0.00 0.00 0.00 1.73
2114 2233 8.768397 TGTATCATCTGATGGTTTTACCTTAGT 58.232 33.333 17.06 0.00 39.58 2.24
2122 2241 3.975312 TGGTTTTACCTTAGTCCTGTCCA 59.025 43.478 0.00 0.00 39.58 4.02
2129 2248 4.949121 ACCTTAGTCCTGTCCAACTCTAT 58.051 43.478 0.00 0.00 0.00 1.98
2130 2249 5.342866 ACCTTAGTCCTGTCCAACTCTATT 58.657 41.667 0.00 0.00 0.00 1.73
2139 2284 5.263968 TGTCCAACTCTATTAGCAGTAGC 57.736 43.478 0.00 0.00 42.56 3.58
2145 2290 6.763135 CCAACTCTATTAGCAGTAGCAAATCA 59.237 38.462 0.00 0.00 45.49 2.57
2148 2293 7.560368 ACTCTATTAGCAGTAGCAAATCAGTT 58.440 34.615 0.00 0.00 45.49 3.16
2163 2308 6.656945 CAAATCAGTTACTGCAGCAGATATC 58.343 40.000 29.70 14.94 35.18 1.63
2165 2310 3.055591 CAGTTACTGCAGCAGATATCCG 58.944 50.000 29.70 8.57 35.18 4.18
2166 2311 2.959030 AGTTACTGCAGCAGATATCCGA 59.041 45.455 29.70 3.50 35.18 4.55
2167 2312 3.576118 AGTTACTGCAGCAGATATCCGAT 59.424 43.478 29.70 6.26 35.18 4.18
2173 2318 1.857217 CAGCAGATATCCGATATGCGC 59.143 52.381 5.59 0.00 39.11 6.09
2189 2334 6.458342 CGATATGCGCCACTCATATACTTCTA 60.458 42.308 4.18 0.00 37.28 2.10
2190 2335 4.929819 TGCGCCACTCATATACTTCTAA 57.070 40.909 4.18 0.00 0.00 2.10
2287 2432 5.859205 ATCAAGAAGGCAAAACTCTGTTT 57.141 34.783 0.00 0.00 0.00 2.83
2380 2525 3.702548 TCCCGTGTACAGCTGTATATGTT 59.297 43.478 29.80 8.67 32.54 2.71
2472 2645 6.572314 CGGGGTTGCTTTTTCTTTCAGATAAT 60.572 38.462 0.00 0.00 0.00 1.28
2473 2646 6.591448 GGGGTTGCTTTTTCTTTCAGATAATG 59.409 38.462 0.00 0.00 0.00 1.90
2474 2647 7.154656 GGGTTGCTTTTTCTTTCAGATAATGT 58.845 34.615 0.00 0.00 0.00 2.71
2480 2653 9.468532 GCTTTTTCTTTCAGATAATGTCAGTTT 57.531 29.630 0.00 0.00 0.00 2.66
2508 2681 6.447084 TCAGTTCCTCCCTTATTTTGATACCT 59.553 38.462 0.00 0.00 0.00 3.08
2585 2758 4.399618 GTCAGTATACACAGCTTCAGGAGA 59.600 45.833 5.50 0.00 0.00 3.71
2673 2846 2.492088 TGGTGATGTGAGTACTTCTCCG 59.508 50.000 0.00 0.00 42.76 4.63
2751 2925 8.699749 GCTTAGATAATGTGGTTTTGTTTCAAC 58.300 33.333 0.00 0.00 0.00 3.18
2808 2982 1.412079 TGCTGCACCATTTCAAGGTT 58.588 45.000 0.00 0.00 37.23 3.50
2809 2983 1.761784 TGCTGCACCATTTCAAGGTTT 59.238 42.857 0.00 0.00 37.23 3.27
2845 3019 5.580297 GTGTCTAAATTCTCAGGCTCTCTTG 59.420 44.000 0.00 0.00 0.00 3.02
2850 3024 3.409026 TTCTCAGGCTCTCTTGTTTCC 57.591 47.619 0.00 0.00 0.00 3.13
2897 3071 4.990543 TTGAATGTTCTCAGTTGCTACG 57.009 40.909 0.00 0.00 0.00 3.51
2912 3086 2.202566 GCTACGGTGGAAGCTTGATAC 58.797 52.381 2.10 0.00 35.80 2.24
2913 3087 2.822764 CTACGGTGGAAGCTTGATACC 58.177 52.381 2.10 8.48 0.00 2.73
2946 3120 3.979911 TCATGGAATACCTGCCAATTGT 58.020 40.909 4.43 0.00 37.78 2.71
3014 3188 5.844301 AATTTTAACTGCGATTGCCTTTG 57.156 34.783 1.50 0.00 41.78 2.77
3089 3263 3.287867 AATAGTGGTCTGCTGAATGGG 57.712 47.619 0.00 0.00 0.00 4.00
3185 3359 6.021672 TGATAGCCTATCCATCTGTCTCATT 58.978 40.000 9.20 0.00 34.26 2.57
3219 3393 9.241919 TGTATTCATGTAGTCACCATGATTTTT 57.758 29.630 4.13 0.00 45.84 1.94
3270 3444 3.904571 TGTGCTTCAGTTGATTGAATGC 58.095 40.909 0.00 0.00 36.55 3.56
3350 3524 2.936202 ACAGATCTGGAGAGAGAGCTC 58.064 52.381 26.08 5.27 36.57 4.09
3357 3531 2.882761 CTGGAGAGAGAGCTCAGATGAG 59.117 54.545 17.77 5.45 43.81 2.90
3363 3537 3.638160 GAGAGAGCTCAGATGAGAATGGT 59.362 47.826 17.77 0.00 44.74 3.55
3387 3561 1.813513 AAAGTGCCATTCTGGAGTCG 58.186 50.000 0.00 0.00 40.96 4.18
3459 3633 4.836125 TGAGGTGAATCTTTTGCACTTC 57.164 40.909 0.00 0.00 38.60 3.01
3462 3636 5.126869 TGAGGTGAATCTTTTGCACTTCAAA 59.873 36.000 0.00 0.00 42.92 2.69
3678 3852 4.968259 ACACTGCTCATACTGTTTGGTAA 58.032 39.130 0.00 0.00 0.00 2.85
3736 3910 4.771590 TTTAGCTCTTTTCATGTGCCAG 57.228 40.909 0.00 0.00 0.00 4.85
3740 3914 4.144297 AGCTCTTTTCATGTGCCAGTTAA 58.856 39.130 0.00 0.00 0.00 2.01
3790 3964 4.567747 GGTTGACTGATGGATTAGTTGGGT 60.568 45.833 0.00 0.00 0.00 4.51
3899 4073 5.262588 TCTGAACTTTTTCCAAAAGAGGC 57.737 39.130 14.46 5.25 0.00 4.70
4036 4210 5.379706 AATACCCTTCTCTTTGCAGCTAT 57.620 39.130 0.00 0.00 0.00 2.97
4210 4384 7.865706 ATTTCAGGGTAAATACATCTGTGTC 57.134 36.000 10.69 0.00 39.77 3.67
4264 4438 5.098211 GCAAAGGTGTGATAATCTTCTTGC 58.902 41.667 0.00 0.00 0.00 4.01
4275 4449 8.739972 GTGATAATCTTCTTGCCCTTCTTTTTA 58.260 33.333 0.00 0.00 0.00 1.52
4278 4452 6.825944 ATCTTCTTGCCCTTCTTTTTACTC 57.174 37.500 0.00 0.00 0.00 2.59
4288 4462 6.173339 CCCTTCTTTTTACTCACTGAGCATA 58.827 40.000 5.92 0.00 32.04 3.14
4316 4494 3.799281 AATATGCACCGTGGAAAATGG 57.201 42.857 0.00 0.00 41.27 3.16
4434 4612 0.391130 TGTTCCGCATAGTCCAGCAC 60.391 55.000 0.00 0.00 0.00 4.40
4531 4709 1.272490 TCGAGAAGCACCACGAGAAAT 59.728 47.619 0.00 0.00 0.00 2.17
4816 5157 3.895656 TCATAAGTAGCTAGGCCGATTGT 59.104 43.478 0.00 0.00 0.00 2.71
4881 5222 8.867097 GGTAGGGAATATGTCTCTGTAAATACA 58.133 37.037 0.00 0.00 37.74 2.29
4945 5286 1.448365 TGCACTGGCTATGAGCACG 60.448 57.895 0.21 0.00 44.75 5.34
4957 5298 1.219393 GAGCACGAAGGAGGAAGGG 59.781 63.158 0.00 0.00 0.00 3.95
4968 5309 5.510520 CGAAGGAGGAAGGGAATAATCAGAG 60.511 48.000 0.00 0.00 0.00 3.35
5012 5355 4.038763 TCGACAGTGTCTATCTGTTGGTTT 59.961 41.667 20.64 0.00 44.68 3.27
5013 5356 4.150627 CGACAGTGTCTATCTGTTGGTTTG 59.849 45.833 20.64 0.00 44.68 2.93
5016 5359 6.119536 ACAGTGTCTATCTGTTGGTTTGAAA 58.880 36.000 0.00 0.00 42.50 2.69
5017 5360 6.772716 ACAGTGTCTATCTGTTGGTTTGAAAT 59.227 34.615 0.00 0.00 42.50 2.17
5018 5361 7.080099 CAGTGTCTATCTGTTGGTTTGAAATG 58.920 38.462 0.00 0.00 0.00 2.32
5019 5362 5.858581 GTGTCTATCTGTTGGTTTGAAATGC 59.141 40.000 0.00 0.00 0.00 3.56
5020 5363 5.769662 TGTCTATCTGTTGGTTTGAAATGCT 59.230 36.000 0.00 0.00 0.00 3.79
5021 5364 6.939730 TGTCTATCTGTTGGTTTGAAATGCTA 59.060 34.615 0.00 0.00 0.00 3.49
5022 5365 7.094805 TGTCTATCTGTTGGTTTGAAATGCTAC 60.095 37.037 0.00 0.00 0.00 3.58
5023 5366 7.119846 GTCTATCTGTTGGTTTGAAATGCTACT 59.880 37.037 0.00 0.00 0.00 2.57
5024 5367 5.437289 TCTGTTGGTTTGAAATGCTACTG 57.563 39.130 0.00 0.00 0.00 2.74
5025 5368 4.278170 TCTGTTGGTTTGAAATGCTACTGG 59.722 41.667 0.00 0.00 0.00 4.00
5044 5387 8.782144 GCTACTGGTAGTATACTCGTATTTCTT 58.218 37.037 9.12 0.00 42.51 2.52
5066 5409 7.657336 TCTTTTTGTTTAAGTCCAAGCCATAG 58.343 34.615 0.00 0.00 0.00 2.23
5071 5414 4.706842 TTAAGTCCAAGCCATAGGATCC 57.293 45.455 2.48 2.48 36.11 3.36
5073 5416 0.035458 GTCCAAGCCATAGGATCCGG 59.965 60.000 5.98 2.60 36.11 5.14
5095 5438 1.128200 ACCTGTCCTGTGTTGCTACA 58.872 50.000 0.00 0.00 0.00 2.74
5110 5453 9.325198 TGTGTTGCTACAGATTTAGTAATATGG 57.675 33.333 0.00 0.00 37.30 2.74
5111 5454 9.542462 GTGTTGCTACAGATTTAGTAATATGGA 57.458 33.333 0.00 0.00 37.30 3.41
5112 5455 9.542462 TGTTGCTACAGATTTAGTAATATGGAC 57.458 33.333 0.00 0.00 37.30 4.02
5113 5456 9.542462 GTTGCTACAGATTTAGTAATATGGACA 57.458 33.333 0.00 0.00 37.30 4.02
5114 5457 9.764363 TTGCTACAGATTTAGTAATATGGACAG 57.236 33.333 0.00 0.00 37.30 3.51
5115 5458 8.367911 TGCTACAGATTTAGTAATATGGACAGG 58.632 37.037 0.00 0.00 37.30 4.00
5116 5459 8.368668 GCTACAGATTTAGTAATATGGACAGGT 58.631 37.037 0.00 0.00 37.30 4.00
5117 5460 9.698309 CTACAGATTTAGTAATATGGACAGGTG 57.302 37.037 0.00 0.00 37.30 4.00
5118 5461 7.509546 ACAGATTTAGTAATATGGACAGGTGG 58.490 38.462 0.00 0.00 37.30 4.61
5119 5462 6.936900 CAGATTTAGTAATATGGACAGGTGGG 59.063 42.308 0.00 0.00 30.98 4.61
5120 5463 6.849697 AGATTTAGTAATATGGACAGGTGGGA 59.150 38.462 0.00 0.00 0.00 4.37
5121 5464 6.494666 TTTAGTAATATGGACAGGTGGGAG 57.505 41.667 0.00 0.00 0.00 4.30
5193 5536 2.483745 CAGCTCACGGCATTGCTG 59.516 61.111 15.93 15.93 45.15 4.41
5326 5669 0.243636 GGTTGCTTTGGAACATCCGG 59.756 55.000 0.00 0.00 40.17 5.14
5337 5680 0.039618 AACATCCGGGGAACAGCAAT 59.960 50.000 0.00 0.00 0.00 3.56
5381 5729 5.558846 GCAATGGCAAAAACTCAACTGGAG 61.559 45.833 0.00 0.00 44.21 3.86
5407 5755 7.944729 ATGTACTGGATGCTGAAAATAACTT 57.055 32.000 0.00 0.00 0.00 2.66
5440 5789 4.533919 TTCATGGCCAACAAATTACAGG 57.466 40.909 10.96 0.00 0.00 4.00
5441 5790 2.830923 TCATGGCCAACAAATTACAGGG 59.169 45.455 10.96 0.00 0.00 4.45
5442 5791 2.685106 TGGCCAACAAATTACAGGGA 57.315 45.000 0.61 0.00 0.00 4.20
5445 5794 1.824852 GCCAACAAATTACAGGGAGGG 59.175 52.381 0.00 0.00 0.00 4.30
5447 5796 2.225267 CCAACAAATTACAGGGAGGGGT 60.225 50.000 0.00 0.00 0.00 4.95
5450 5799 2.042569 ACAAATTACAGGGAGGGGTTCC 59.957 50.000 0.00 0.00 46.00 3.62
5484 5838 3.254166 AGCAACAAAGCAAATCGACTGAT 59.746 39.130 0.56 0.00 36.85 2.90
5485 5839 3.983344 GCAACAAAGCAAATCGACTGATT 59.017 39.130 0.56 0.00 46.75 2.57
5486 5840 4.143473 GCAACAAAGCAAATCGACTGATTG 60.143 41.667 1.01 7.03 44.02 2.67
5487 5841 4.164822 ACAAAGCAAATCGACTGATTGG 57.835 40.909 14.42 9.06 44.02 3.16
5488 5842 3.569701 ACAAAGCAAATCGACTGATTGGT 59.430 39.130 2.31 2.31 44.02 3.67
5489 5843 4.759693 ACAAAGCAAATCGACTGATTGGTA 59.240 37.500 5.74 0.00 44.02 3.25
5513 5867 2.479566 AACTGAGCGACATGGTGATT 57.520 45.000 0.00 0.00 0.00 2.57
5553 5907 1.523758 AGATGTGCCAAGGAAACGAC 58.476 50.000 0.00 0.00 0.00 4.34
5558 5912 0.672401 TGCCAAGGAAACGACGATCC 60.672 55.000 14.04 14.04 35.88 3.36
5559 5913 1.693083 GCCAAGGAAACGACGATCCG 61.693 60.000 15.33 6.27 40.78 4.18
5560 5914 0.108992 CCAAGGAAACGACGATCCGA 60.109 55.000 15.33 0.00 40.78 4.55
5561 5915 1.470979 CCAAGGAAACGACGATCCGAT 60.471 52.381 15.33 8.55 40.78 4.18
5562 5916 1.852895 CAAGGAAACGACGATCCGATC 59.147 52.381 15.33 0.00 40.78 3.69
5668 6022 1.740664 ACAGCTGCACGCAGATCAG 60.741 57.895 22.81 8.07 46.30 2.90
5683 6037 5.108141 CGCAGATCAGAACAAACAAAACATG 60.108 40.000 0.00 0.00 0.00 3.21
5688 6042 5.342433 TCAGAACAAACAAAACATGCAGAG 58.658 37.500 0.00 0.00 0.00 3.35
5699 6053 0.249784 CATGCAGAGGGATCAGACGG 60.250 60.000 0.00 0.00 0.00 4.79
5704 6058 0.333312 AGAGGGATCAGACGGACAGT 59.667 55.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.043710 TGTCCATTTTGTTTGTGGTCTATTTTT 58.956 29.630 0.00 0.00 34.61 1.94
34 35 7.560368 TGTCCATTTTGTTTGTGGTCTATTTT 58.440 30.769 0.00 0.00 34.61 1.82
35 36 7.118496 TGTCCATTTTGTTTGTGGTCTATTT 57.882 32.000 0.00 0.00 34.61 1.40
36 37 6.723298 TGTCCATTTTGTTTGTGGTCTATT 57.277 33.333 0.00 0.00 34.61 1.73
37 38 6.493115 TGATGTCCATTTTGTTTGTGGTCTAT 59.507 34.615 0.00 0.00 34.61 1.98
38 39 5.830457 TGATGTCCATTTTGTTTGTGGTCTA 59.170 36.000 0.00 0.00 34.61 2.59
39 40 4.648762 TGATGTCCATTTTGTTTGTGGTCT 59.351 37.500 0.00 0.00 34.61 3.85
40 41 4.942852 TGATGTCCATTTTGTTTGTGGTC 58.057 39.130 0.00 0.00 34.61 4.02
41 42 4.740334 GCTGATGTCCATTTTGTTTGTGGT 60.740 41.667 0.00 0.00 34.61 4.16
42 43 3.742369 GCTGATGTCCATTTTGTTTGTGG 59.258 43.478 0.00 0.00 0.00 4.17
43 44 4.624015 AGCTGATGTCCATTTTGTTTGTG 58.376 39.130 0.00 0.00 0.00 3.33
44 45 4.942761 AGCTGATGTCCATTTTGTTTGT 57.057 36.364 0.00 0.00 0.00 2.83
45 46 6.680810 TCTAAGCTGATGTCCATTTTGTTTG 58.319 36.000 0.00 0.00 0.00 2.93
46 47 6.899393 TCTAAGCTGATGTCCATTTTGTTT 57.101 33.333 0.00 0.00 0.00 2.83
47 48 6.860080 CATCTAAGCTGATGTCCATTTTGTT 58.140 36.000 5.99 0.00 39.05 2.83
48 49 6.446781 CATCTAAGCTGATGTCCATTTTGT 57.553 37.500 5.99 0.00 39.05 2.83
58 59 4.502016 ACAGTGTCACATCTAAGCTGATG 58.498 43.478 11.48 11.48 46.61 3.07
59 60 4.382470 GGACAGTGTCACATCTAAGCTGAT 60.382 45.833 24.20 0.00 33.68 2.90
60 61 3.056536 GGACAGTGTCACATCTAAGCTGA 60.057 47.826 24.20 0.00 33.68 4.26
61 62 3.056250 AGGACAGTGTCACATCTAAGCTG 60.056 47.826 24.20 0.00 33.68 4.24
62 63 3.169099 AGGACAGTGTCACATCTAAGCT 58.831 45.455 24.20 6.36 33.68 3.74
63 64 3.601443 AGGACAGTGTCACATCTAAGC 57.399 47.619 24.20 4.10 33.68 3.09
64 65 5.416013 TGTCTAGGACAGTGTCACATCTAAG 59.584 44.000 24.20 10.09 37.67 2.18
65 66 5.321927 TGTCTAGGACAGTGTCACATCTAA 58.678 41.667 24.20 1.96 37.67 2.10
66 67 4.918588 TGTCTAGGACAGTGTCACATCTA 58.081 43.478 24.20 14.47 37.67 1.98
67 68 3.767711 TGTCTAGGACAGTGTCACATCT 58.232 45.455 24.20 14.12 37.67 2.90
78 79 2.038557 GCAAAAGGGTCTGTCTAGGACA 59.961 50.000 0.43 0.43 40.50 4.02
79 80 2.038557 TGCAAAAGGGTCTGTCTAGGAC 59.961 50.000 0.00 0.00 0.00 3.85
80 81 2.334977 TGCAAAAGGGTCTGTCTAGGA 58.665 47.619 0.00 0.00 0.00 2.94
81 82 2.859165 TGCAAAAGGGTCTGTCTAGG 57.141 50.000 0.00 0.00 0.00 3.02
82 83 5.474876 AGATTTTGCAAAAGGGTCTGTCTAG 59.525 40.000 27.08 0.00 0.00 2.43
83 84 5.241506 CAGATTTTGCAAAAGGGTCTGTCTA 59.758 40.000 29.39 9.24 32.18 2.59
84 85 4.038402 CAGATTTTGCAAAAGGGTCTGTCT 59.962 41.667 29.39 22.37 32.18 3.41
85 86 4.301628 CAGATTTTGCAAAAGGGTCTGTC 58.698 43.478 29.39 21.00 32.18 3.51
86 87 3.070015 CCAGATTTTGCAAAAGGGTCTGT 59.930 43.478 32.11 17.78 33.71 3.41
87 88 3.321682 TCCAGATTTTGCAAAAGGGTCTG 59.678 43.478 30.14 30.14 34.60 3.51
88 89 3.321968 GTCCAGATTTTGCAAAAGGGTCT 59.678 43.478 27.08 21.70 0.00 3.85
89 90 3.069443 TGTCCAGATTTTGCAAAAGGGTC 59.931 43.478 27.08 22.93 0.00 4.46
90 91 3.037549 TGTCCAGATTTTGCAAAAGGGT 58.962 40.909 27.08 12.94 0.00 4.34
91 92 3.749665 TGTCCAGATTTTGCAAAAGGG 57.250 42.857 27.08 25.18 0.00 3.95
92 93 5.528320 ACATTTGTCCAGATTTTGCAAAAGG 59.472 36.000 27.08 22.31 33.60 3.11
93 94 6.258287 TGACATTTGTCCAGATTTTGCAAAAG 59.742 34.615 27.08 15.09 44.15 2.27
94 95 6.036953 GTGACATTTGTCCAGATTTTGCAAAA 59.963 34.615 25.76 25.76 44.15 2.44
95 96 5.523188 GTGACATTTGTCCAGATTTTGCAAA 59.477 36.000 8.05 8.05 44.15 3.68
96 97 5.049167 GTGACATTTGTCCAGATTTTGCAA 58.951 37.500 8.16 0.00 44.15 4.08
97 98 4.341806 AGTGACATTTGTCCAGATTTTGCA 59.658 37.500 8.16 0.00 44.15 4.08
98 99 4.874970 AGTGACATTTGTCCAGATTTTGC 58.125 39.130 8.16 0.00 44.15 3.68
99 100 6.072286 AGCTAGTGACATTTGTCCAGATTTTG 60.072 38.462 8.16 0.00 44.15 2.44
100 101 6.006449 AGCTAGTGACATTTGTCCAGATTTT 58.994 36.000 8.16 0.00 44.15 1.82
101 102 5.564550 AGCTAGTGACATTTGTCCAGATTT 58.435 37.500 8.16 0.00 44.15 2.17
102 103 5.171339 AGCTAGTGACATTTGTCCAGATT 57.829 39.130 8.16 0.00 44.15 2.40
103 104 4.383552 GGAGCTAGTGACATTTGTCCAGAT 60.384 45.833 8.16 2.13 44.15 2.90
104 105 3.055819 GGAGCTAGTGACATTTGTCCAGA 60.056 47.826 8.16 0.00 44.15 3.86
105 106 3.265791 GGAGCTAGTGACATTTGTCCAG 58.734 50.000 8.16 4.47 44.15 3.86
106 107 2.637382 TGGAGCTAGTGACATTTGTCCA 59.363 45.455 8.16 0.00 44.15 4.02
107 108 3.334583 TGGAGCTAGTGACATTTGTCC 57.665 47.619 8.16 0.54 44.15 4.02
108 109 5.689383 TTTTGGAGCTAGTGACATTTGTC 57.311 39.130 3.72 3.72 44.97 3.18
109 110 5.769662 TGATTTTGGAGCTAGTGACATTTGT 59.230 36.000 0.00 0.00 0.00 2.83
110 111 6.258230 TGATTTTGGAGCTAGTGACATTTG 57.742 37.500 0.00 0.00 0.00 2.32
111 112 6.899393 TTGATTTTGGAGCTAGTGACATTT 57.101 33.333 0.00 0.00 0.00 2.32
112 113 7.472334 AATTGATTTTGGAGCTAGTGACATT 57.528 32.000 0.00 0.00 0.00 2.71
113 114 8.049117 TCTAATTGATTTTGGAGCTAGTGACAT 58.951 33.333 0.00 0.00 0.00 3.06
114 115 7.334421 GTCTAATTGATTTTGGAGCTAGTGACA 59.666 37.037 0.00 0.00 0.00 3.58
115 116 7.550906 AGTCTAATTGATTTTGGAGCTAGTGAC 59.449 37.037 0.00 0.00 0.00 3.67
116 117 7.624549 AGTCTAATTGATTTTGGAGCTAGTGA 58.375 34.615 0.00 0.00 0.00 3.41
117 118 7.856145 AGTCTAATTGATTTTGGAGCTAGTG 57.144 36.000 0.00 0.00 0.00 2.74
118 119 9.384764 GTTAGTCTAATTGATTTTGGAGCTAGT 57.615 33.333 0.00 0.00 0.00 2.57
119 120 8.831550 GGTTAGTCTAATTGATTTTGGAGCTAG 58.168 37.037 0.00 0.00 0.00 3.42
120 121 8.548877 AGGTTAGTCTAATTGATTTTGGAGCTA 58.451 33.333 0.00 0.00 0.00 3.32
121 122 7.406104 AGGTTAGTCTAATTGATTTTGGAGCT 58.594 34.615 0.00 0.00 0.00 4.09
122 123 7.201741 GGAGGTTAGTCTAATTGATTTTGGAGC 60.202 40.741 0.00 0.00 0.00 4.70
123 124 7.011482 CGGAGGTTAGTCTAATTGATTTTGGAG 59.989 40.741 0.00 0.00 0.00 3.86
124 125 6.821665 CGGAGGTTAGTCTAATTGATTTTGGA 59.178 38.462 0.00 0.00 0.00 3.53
125 126 6.598064 ACGGAGGTTAGTCTAATTGATTTTGG 59.402 38.462 0.00 0.00 0.00 3.28
126 127 7.611213 ACGGAGGTTAGTCTAATTGATTTTG 57.389 36.000 0.00 0.00 0.00 2.44
127 128 7.881232 TGAACGGAGGTTAGTCTAATTGATTTT 59.119 33.333 0.00 0.00 36.24 1.82
128 129 7.391620 TGAACGGAGGTTAGTCTAATTGATTT 58.608 34.615 0.00 0.00 36.24 2.17
129 130 6.942976 TGAACGGAGGTTAGTCTAATTGATT 58.057 36.000 0.00 0.00 36.24 2.57
130 131 6.540438 TGAACGGAGGTTAGTCTAATTGAT 57.460 37.500 0.00 0.00 36.24 2.57
131 132 5.988310 TGAACGGAGGTTAGTCTAATTGA 57.012 39.130 0.00 0.00 36.24 2.57
132 133 6.395629 TCTTGAACGGAGGTTAGTCTAATTG 58.604 40.000 0.00 0.00 36.24 2.32
133 134 6.600882 TCTTGAACGGAGGTTAGTCTAATT 57.399 37.500 0.00 0.00 36.24 1.40
134 135 6.600882 TTCTTGAACGGAGGTTAGTCTAAT 57.399 37.500 0.00 0.00 36.24 1.73
135 136 6.600882 ATTCTTGAACGGAGGTTAGTCTAA 57.399 37.500 0.00 0.00 36.24 2.10
136 137 6.660521 TGTATTCTTGAACGGAGGTTAGTCTA 59.339 38.462 0.00 0.00 36.24 2.59
137 138 5.479375 TGTATTCTTGAACGGAGGTTAGTCT 59.521 40.000 0.00 0.00 36.24 3.24
138 139 5.575995 GTGTATTCTTGAACGGAGGTTAGTC 59.424 44.000 0.00 0.00 36.24 2.59
139 140 5.245526 AGTGTATTCTTGAACGGAGGTTAGT 59.754 40.000 0.00 0.00 36.24 2.24
140 141 5.721232 AGTGTATTCTTGAACGGAGGTTAG 58.279 41.667 0.00 0.00 36.24 2.34
141 142 5.733620 AGTGTATTCTTGAACGGAGGTTA 57.266 39.130 0.00 0.00 36.24 2.85
142 143 4.618920 AGTGTATTCTTGAACGGAGGTT 57.381 40.909 0.00 0.00 39.63 3.50
149 150 8.827677 ACTGTCTTTGTTAGTGTATTCTTGAAC 58.172 33.333 0.00 0.00 0.00 3.18
150 151 8.958119 ACTGTCTTTGTTAGTGTATTCTTGAA 57.042 30.769 0.00 0.00 0.00 2.69
166 167 6.857964 AGCATTTTCGTATTTGACTGTCTTTG 59.142 34.615 9.51 0.00 0.00 2.77
180 181 3.609853 AGCTCCATTCAGCATTTTCGTA 58.390 40.909 0.00 0.00 42.40 3.43
184 185 2.165845 GCAGAGCTCCATTCAGCATTTT 59.834 45.455 10.93 0.00 42.40 1.82
192 193 3.794737 TGGATGCAGAGCTCCATTC 57.205 52.632 10.93 7.20 36.63 2.67
206 207 9.863650 ATCATTTCAAATTCAGTCTCTATGGAT 57.136 29.630 0.00 0.00 0.00 3.41
276 277 9.128404 ACACGGTTGTACATTATATCTCTAAGA 57.872 33.333 0.00 0.00 32.60 2.10
360 361 7.289310 TGGACTTTGAGGATGAATATTGCATA 58.711 34.615 0.00 0.00 0.00 3.14
366 367 8.599624 AAAACATGGACTTTGAGGATGAATAT 57.400 30.769 0.00 0.00 0.00 1.28
416 420 7.563888 AGAAGGATGTGATGTGTATGAAATG 57.436 36.000 0.00 0.00 0.00 2.32
424 428 7.129457 ACATGTATAGAAGGATGTGATGTGT 57.871 36.000 0.00 0.00 0.00 3.72
506 528 1.005394 GCCTTCGTTGAGACCGGAA 60.005 57.895 9.46 0.00 0.00 4.30
508 530 2.434359 GGCCTTCGTTGAGACCGG 60.434 66.667 0.00 0.00 0.00 5.28
509 531 2.809601 CGGCCTTCGTTGAGACCG 60.810 66.667 0.00 0.00 31.25 4.79
510 532 2.434359 CCGGCCTTCGTTGAGACC 60.434 66.667 0.00 0.00 37.11 3.85
511 533 2.434359 CCCGGCCTTCGTTGAGAC 60.434 66.667 0.00 0.00 37.11 3.36
512 534 4.388499 GCCCGGCCTTCGTTGAGA 62.388 66.667 0.00 0.00 37.11 3.27
513 535 4.394712 AGCCCGGCCTTCGTTGAG 62.395 66.667 5.55 0.00 37.11 3.02
514 536 4.388499 GAGCCCGGCCTTCGTTGA 62.388 66.667 5.55 0.00 37.11 3.18
533 555 2.450609 TTGACTGAGTAGGGCGTTTC 57.549 50.000 0.00 0.00 0.00 2.78
755 779 4.125695 GTACGACGGCTCGGGCTT 62.126 66.667 7.48 0.00 44.80 4.35
784 808 2.311688 CTGTCCGTGGGATGTAGGGC 62.312 65.000 0.00 0.00 32.73 5.19
809 833 3.712907 TACCCGACCCTTGCTGGC 61.713 66.667 0.00 0.00 0.00 4.85
859 888 0.108585 TTCCTCCTCGTGCTTTGCTT 59.891 50.000 0.00 0.00 0.00 3.91
860 889 0.321122 CTTCCTCCTCGTGCTTTGCT 60.321 55.000 0.00 0.00 0.00 3.91
861 890 1.916697 GCTTCCTCCTCGTGCTTTGC 61.917 60.000 0.00 0.00 0.00 3.68
862 891 1.630244 CGCTTCCTCCTCGTGCTTTG 61.630 60.000 0.00 0.00 0.00 2.77
863 892 1.374758 CGCTTCCTCCTCGTGCTTT 60.375 57.895 0.00 0.00 0.00 3.51
885 914 1.004200 CGGGAAGTAAGCCACGGTT 60.004 57.895 0.00 0.00 0.00 4.44
918 947 2.032987 GTCGCCCGGGGAGAAAAA 59.967 61.111 25.28 0.00 32.47 1.94
1006 1043 1.048601 CGGTGGCTGGAGTATATGGT 58.951 55.000 0.00 0.00 0.00 3.55
1163 1209 1.520787 CCCGCCCTAAGTAAGCACG 60.521 63.158 0.00 0.00 0.00 5.34
1171 1222 1.828224 GCCCAAATCCCGCCCTAAG 60.828 63.158 0.00 0.00 0.00 2.18
1327 1391 1.721664 CGTCCACGGCCTCGAGAATA 61.722 60.000 15.71 0.00 40.11 1.75
1330 1394 4.710167 TCGTCCACGGCCTCGAGA 62.710 66.667 15.71 0.00 40.29 4.04
1460 1524 3.068873 GTGACAGACAGAGACAAGGAAGT 59.931 47.826 0.00 0.00 0.00 3.01
1480 1544 7.637229 CAATCTATTAACTCATTCAGCAGGTG 58.363 38.462 0.00 0.00 0.00 4.00
1495 1559 6.986231 TCTCGAGCAATTCAGCAATCTATTAA 59.014 34.615 7.81 0.00 36.85 1.40
1581 1645 2.415357 CGTTCCAGCACACAAAACAGTT 60.415 45.455 0.00 0.00 0.00 3.16
1667 1738 3.809832 AGTATGCCGATATTGCAAGTGTC 59.190 43.478 4.94 1.90 42.92 3.67
1731 1803 3.564644 GTCTAATACCTACGAGCTGCTCA 59.435 47.826 27.46 9.79 0.00 4.26
1750 1822 8.450578 TTTTCAATGAAAGTCACTGTATGTCT 57.549 30.769 8.51 0.00 32.93 3.41
1751 1823 8.958043 GTTTTTCAATGAAAGTCACTGTATGTC 58.042 33.333 8.51 0.00 32.93 3.06
1754 1826 7.649306 GCAGTTTTTCAATGAAAGTCACTGTAT 59.351 33.333 27.08 7.18 32.93 2.29
1757 1872 5.232838 GGCAGTTTTTCAATGAAAGTCACTG 59.767 40.000 24.93 24.93 32.93 3.66
1766 1881 2.223144 CGAGTCGGCAGTTTTTCAATGA 59.777 45.455 4.10 0.00 0.00 2.57
1794 1909 4.734398 AACATGCAACAAGAAGGAACAA 57.266 36.364 0.00 0.00 0.00 2.83
1805 1923 4.831107 TCAGCACTAGATAACATGCAACA 58.169 39.130 0.00 0.00 40.63 3.33
1808 1926 5.673514 TGAATCAGCACTAGATAACATGCA 58.326 37.500 0.00 0.00 40.63 3.96
1900 2018 5.582269 AGTGATGTGTATTTTCTCATCCACG 59.418 40.000 0.00 0.00 37.46 4.94
1917 2035 2.260639 ATCCTCAGGGACAGTGATGT 57.739 50.000 0.00 0.00 45.43 3.06
2112 2231 4.353777 TGCTAATAGAGTTGGACAGGACT 58.646 43.478 0.00 0.00 0.00 3.85
2114 2233 4.353777 ACTGCTAATAGAGTTGGACAGGA 58.646 43.478 0.00 0.00 0.00 3.86
2122 2241 7.560368 ACTGATTTGCTACTGCTAATAGAGTT 58.440 34.615 0.00 0.00 42.76 3.01
2129 2248 6.968131 CAGTAACTGATTTGCTACTGCTAA 57.032 37.500 0.00 0.00 36.05 3.09
2139 2284 4.959596 ATCTGCTGCAGTAACTGATTTG 57.040 40.909 27.24 0.15 32.44 2.32
2145 2290 2.959030 TCGGATATCTGCTGCAGTAACT 59.041 45.455 27.24 13.94 32.61 2.24
2148 2293 4.440663 GCATATCGGATATCTGCTGCAGTA 60.441 45.833 27.24 18.83 32.61 2.74
2163 2308 2.299993 ATATGAGTGGCGCATATCGG 57.700 50.000 10.83 0.00 32.92 4.18
2165 2310 5.655488 AGAAGTATATGAGTGGCGCATATC 58.345 41.667 10.83 3.60 37.80 1.63
2166 2311 5.667539 AGAAGTATATGAGTGGCGCATAT 57.332 39.130 10.83 6.06 39.44 1.78
2167 2312 6.584185 TTAGAAGTATATGAGTGGCGCATA 57.416 37.500 10.83 0.00 31.46 3.14
2189 2334 8.938906 GTCATCACCAATAATCTGCAAATTTTT 58.061 29.630 0.00 0.00 0.00 1.94
2190 2335 8.095792 TGTCATCACCAATAATCTGCAAATTTT 58.904 29.630 0.00 0.00 0.00 1.82
2287 2432 3.383185 GGCGGAAATCATAACCAAATCCA 59.617 43.478 0.00 0.00 0.00 3.41
2389 2534 3.524541 CCAAATAGCATGACTTTTGGCC 58.475 45.455 16.05 0.00 38.51 5.36
2411 2581 1.037493 TACACCTACTAGCATGGCCG 58.963 55.000 0.00 0.00 0.00 6.13
2438 2611 3.934457 AAAGCAACCCCGTAAAGATTG 57.066 42.857 0.00 0.00 0.00 2.67
2472 2645 4.597507 AGGGAGGAACTGAATAAACTGACA 59.402 41.667 0.00 0.00 41.55 3.58
2473 2646 5.167303 AGGGAGGAACTGAATAAACTGAC 57.833 43.478 0.00 0.00 41.55 3.51
2474 2647 5.843019 AAGGGAGGAACTGAATAAACTGA 57.157 39.130 0.00 0.00 41.55 3.41
2480 2653 9.847224 GTATCAAAATAAGGGAGGAACTGAATA 57.153 33.333 0.00 0.00 41.55 1.75
2508 2681 2.611473 CGAAAGCCTGCAGAGAAGAAGA 60.611 50.000 17.39 0.00 0.00 2.87
2673 2846 4.804597 AGGCCCAAAATATAAGGAGAACC 58.195 43.478 0.00 0.00 0.00 3.62
2751 2925 8.571336 ACTCTTCACATATTTTTCAAAGACCTG 58.429 33.333 0.00 0.00 0.00 4.00
2808 2982 8.908786 AGAATTTAGACACTCAATCAACTCAA 57.091 30.769 0.00 0.00 0.00 3.02
2809 2983 8.150296 TGAGAATTTAGACACTCAATCAACTCA 58.850 33.333 0.00 0.00 36.63 3.41
2879 3053 3.067106 CACCGTAGCAACTGAGAACATT 58.933 45.455 0.00 0.00 0.00 2.71
2897 3071 2.789409 ACAGGTATCAAGCTTCCACC 57.211 50.000 11.17 11.17 0.00 4.61
2912 3086 8.355169 CAGGTATTCCATGAAAAATGATACAGG 58.645 37.037 0.00 0.00 35.89 4.00
2913 3087 7.864379 GCAGGTATTCCATGAAAAATGATACAG 59.136 37.037 0.00 0.00 35.89 2.74
3014 3188 5.391416 GCAAGTTACTTCCAGCTCAAGATTC 60.391 44.000 8.65 0.16 0.00 2.52
3089 3263 3.119352 GCCATCCTTCCACAAAAGACATC 60.119 47.826 0.00 0.00 0.00 3.06
3204 3378 6.550854 TCTCAAAAGGAAAAATCATGGTGACT 59.449 34.615 0.00 0.00 0.00 3.41
3245 3419 6.238157 GCATTCAATCAACTGAAGCACAAAAA 60.238 34.615 0.00 0.00 38.66 1.94
3270 3444 4.024048 GCCAACAACTCGTATATTGATGGG 60.024 45.833 13.17 3.34 44.64 4.00
3350 3524 6.404074 GGCACTTTTCTTACCATTCTCATCTG 60.404 42.308 0.00 0.00 0.00 2.90
3378 3552 3.081710 TCTGGTTCATACGACTCCAGA 57.918 47.619 7.94 7.94 43.95 3.86
3387 3561 8.213518 TCTTTATTGCTTCATCTGGTTCATAC 57.786 34.615 0.00 0.00 0.00 2.39
3471 3645 6.100279 TCAGGAATCTAAGCATCAATAGTGGT 59.900 38.462 0.00 0.00 0.00 4.16
3523 3697 4.036498 CAGAGGAATGTGATTTCCATCAGC 59.964 45.833 6.05 0.00 46.40 4.26
3713 3887 4.870363 TGGCACATGAAAAGAGCTAAAAC 58.130 39.130 0.00 0.00 0.00 2.43
3720 3894 7.951530 AATTTTAACTGGCACATGAAAAGAG 57.048 32.000 0.00 0.00 38.20 2.85
3736 3910 8.655651 TCAGTGGAACCAATCAAAATTTTAAC 57.344 30.769 2.44 0.00 37.80 2.01
3740 3914 6.888105 ACTTCAGTGGAACCAATCAAAATTT 58.112 32.000 0.00 0.00 37.80 1.82
3817 3991 1.002888 AGGCAGACAACATCCAGTCAG 59.997 52.381 0.00 0.00 37.23 3.51
3899 4073 5.471456 ACAAACATAGCAAGAGAAAGGACAG 59.529 40.000 0.00 0.00 0.00 3.51
4186 4360 6.538742 CGACACAGATGTATTTACCCTGAAAT 59.461 38.462 11.65 0.00 39.95 2.17
4210 4384 1.502231 GAACGGATCCATCACCATCG 58.498 55.000 13.41 0.00 0.00 3.84
4264 4438 4.389374 TGCTCAGTGAGTAAAAAGAAGGG 58.611 43.478 21.06 0.00 31.39 3.95
4275 4449 5.426689 TTTCCTTCATATGCTCAGTGAGT 57.573 39.130 21.06 5.28 31.39 3.41
4288 4462 2.951642 CCACGGTGCATATTTCCTTCAT 59.048 45.455 1.68 0.00 0.00 2.57
4305 4483 1.740585 TGATTACGCCCATTTTCCACG 59.259 47.619 0.00 0.00 0.00 4.94
4316 4494 5.106317 TGACAAAAGAAAGGATGATTACGCC 60.106 40.000 0.00 0.00 0.00 5.68
4488 4666 1.905894 TCGAAGATGGTTGGGATGACA 59.094 47.619 0.00 0.00 0.00 3.58
4542 4720 0.609681 AGTCCTCCCTGACTGACGTC 60.610 60.000 9.11 9.11 43.80 4.34
4548 4726 1.149782 TCTCCCAGTCCTCCCTGACT 61.150 60.000 0.00 0.00 46.35 3.41
4620 4798 4.147322 GACAACGCGCCGACCATG 62.147 66.667 5.73 0.00 0.00 3.66
4784 4962 9.186837 GGCCTAGCTACTTATGAGTTATGTATA 57.813 37.037 0.00 0.00 37.33 1.47
4785 4963 7.148052 CGGCCTAGCTACTTATGAGTTATGTAT 60.148 40.741 0.00 0.00 37.33 2.29
4787 4965 5.047943 CGGCCTAGCTACTTATGAGTTATGT 60.048 44.000 0.00 0.00 37.33 2.29
4788 4966 5.183331 TCGGCCTAGCTACTTATGAGTTATG 59.817 44.000 0.00 0.00 37.33 1.90
4789 4967 5.322754 TCGGCCTAGCTACTTATGAGTTAT 58.677 41.667 0.00 0.00 37.33 1.89
4791 4969 3.563223 TCGGCCTAGCTACTTATGAGTT 58.437 45.455 0.00 0.00 37.33 3.01
4792 4970 3.225177 TCGGCCTAGCTACTTATGAGT 57.775 47.619 0.00 0.00 39.97 3.41
4793 4971 4.021894 ACAATCGGCCTAGCTACTTATGAG 60.022 45.833 0.00 0.00 0.00 2.90
4794 4972 3.895656 ACAATCGGCCTAGCTACTTATGA 59.104 43.478 0.00 0.00 0.00 2.15
4795 4973 4.258702 ACAATCGGCCTAGCTACTTATG 57.741 45.455 0.00 0.00 0.00 1.90
4852 5193 4.884961 ACAGAGACATATTCCCTACCTGT 58.115 43.478 0.00 0.00 0.00 4.00
4889 5230 6.176183 AGTTCAGATATTTACAAGCACTGCT 58.824 36.000 0.00 0.00 42.56 4.24
4890 5231 6.428385 AGTTCAGATATTTACAAGCACTGC 57.572 37.500 0.00 0.00 0.00 4.40
4891 5232 7.119699 TCCAAGTTCAGATATTTACAAGCACTG 59.880 37.037 0.00 0.00 0.00 3.66
4892 5233 7.168219 TCCAAGTTCAGATATTTACAAGCACT 58.832 34.615 0.00 0.00 0.00 4.40
4893 5234 7.377766 TCCAAGTTCAGATATTTACAAGCAC 57.622 36.000 0.00 0.00 0.00 4.40
4945 5286 5.368230 ACTCTGATTATTCCCTTCCTCCTTC 59.632 44.000 0.00 0.00 0.00 3.46
4957 5298 6.831976 ACCTGGTAATCCACTCTGATTATTC 58.168 40.000 0.00 0.00 38.92 1.75
4968 5309 2.433436 GGTGACAACCTGGTAATCCAC 58.567 52.381 0.00 6.41 43.84 4.02
4990 5331 3.577649 ACCAACAGATAGACACTGTCG 57.422 47.619 3.46 0.00 46.01 4.35
4993 5334 6.618287 TTTCAAACCAACAGATAGACACTG 57.382 37.500 0.00 0.00 40.68 3.66
4995 5338 5.858581 GCATTTCAAACCAACAGATAGACAC 59.141 40.000 0.00 0.00 0.00 3.67
5001 5344 5.047802 CCAGTAGCATTTCAAACCAACAGAT 60.048 40.000 0.00 0.00 0.00 2.90
5012 5355 6.544931 ACGAGTATACTACCAGTAGCATTTCA 59.455 38.462 5.09 0.00 33.66 2.69
5013 5356 6.968250 ACGAGTATACTACCAGTAGCATTTC 58.032 40.000 5.09 0.16 33.66 2.17
5016 5359 8.632906 AAATACGAGTATACTACCAGTAGCAT 57.367 34.615 5.09 0.55 33.66 3.79
5017 5360 7.935755 AGAAATACGAGTATACTACCAGTAGCA 59.064 37.037 5.09 0.00 33.66 3.49
5018 5361 8.321650 AGAAATACGAGTATACTACCAGTAGC 57.678 38.462 5.09 3.50 33.66 3.58
5044 5387 6.071984 TCCTATGGCTTGGACTTAAACAAAA 58.928 36.000 0.00 0.00 0.00 2.44
5045 5388 5.636123 TCCTATGGCTTGGACTTAAACAAA 58.364 37.500 0.00 0.00 0.00 2.83
5053 5396 1.051812 CGGATCCTATGGCTTGGACT 58.948 55.000 10.75 0.00 34.90 3.85
5066 5409 4.176752 GGACAGGTGGCCGGATCC 62.177 72.222 5.05 0.00 30.66 3.36
5073 5416 2.555547 GCAACACAGGACAGGTGGC 61.556 63.158 0.00 0.00 40.54 5.01
5095 5438 6.849697 TCCCACCTGTCCATATTACTAAATCT 59.150 38.462 0.00 0.00 0.00 2.40
5102 5445 4.262506 GCTACTCCCACCTGTCCATATTAC 60.263 50.000 0.00 0.00 0.00 1.89
5104 5447 2.706190 GCTACTCCCACCTGTCCATATT 59.294 50.000 0.00 0.00 0.00 1.28
5105 5448 2.090494 AGCTACTCCCACCTGTCCATAT 60.090 50.000 0.00 0.00 0.00 1.78
5106 5449 1.291033 AGCTACTCCCACCTGTCCATA 59.709 52.381 0.00 0.00 0.00 2.74
5107 5450 0.043334 AGCTACTCCCACCTGTCCAT 59.957 55.000 0.00 0.00 0.00 3.41
5108 5451 0.178903 AAGCTACTCCCACCTGTCCA 60.179 55.000 0.00 0.00 0.00 4.02
5109 5452 0.984995 AAAGCTACTCCCACCTGTCC 59.015 55.000 0.00 0.00 0.00 4.02
5110 5453 2.615747 GGAAAAGCTACTCCCACCTGTC 60.616 54.545 3.06 0.00 0.00 3.51
5111 5454 1.351350 GGAAAAGCTACTCCCACCTGT 59.649 52.381 3.06 0.00 0.00 4.00
5112 5455 1.676014 CGGAAAAGCTACTCCCACCTG 60.676 57.143 8.14 0.00 0.00 4.00
5113 5456 0.613777 CGGAAAAGCTACTCCCACCT 59.386 55.000 8.14 0.00 0.00 4.00
5114 5457 0.323957 ACGGAAAAGCTACTCCCACC 59.676 55.000 8.14 0.00 0.00 4.61
5115 5458 3.538634 ATACGGAAAAGCTACTCCCAC 57.461 47.619 8.14 0.00 0.00 4.61
5116 5459 4.713321 ACTAATACGGAAAAGCTACTCCCA 59.287 41.667 8.14 0.00 0.00 4.37
5117 5460 5.273674 ACTAATACGGAAAAGCTACTCCC 57.726 43.478 8.14 0.00 0.00 4.30
5118 5461 6.036844 CCAAACTAATACGGAAAAGCTACTCC 59.963 42.308 4.24 4.24 0.00 3.85
5119 5462 6.592994 ACCAAACTAATACGGAAAAGCTACTC 59.407 38.462 0.00 0.00 0.00 2.59
5120 5463 6.470278 ACCAAACTAATACGGAAAAGCTACT 58.530 36.000 0.00 0.00 0.00 2.57
5121 5464 6.732531 ACCAAACTAATACGGAAAAGCTAC 57.267 37.500 0.00 0.00 0.00 3.58
5167 5510 3.431922 TGCCGTGAGCTGTAGTATTAC 57.568 47.619 0.00 0.00 44.23 1.89
5169 5512 3.198068 CAATGCCGTGAGCTGTAGTATT 58.802 45.455 0.00 0.00 44.23 1.89
5173 5516 0.742281 AGCAATGCCGTGAGCTGTAG 60.742 55.000 0.00 0.00 44.23 2.74
5193 5536 8.589335 TGGAAATATTCGATACTTACAGCTTC 57.411 34.615 0.00 0.00 0.00 3.86
5239 5582 4.196971 GTCCATAGGTAGAAACGGCAAAT 58.803 43.478 0.00 0.00 0.00 2.32
5317 5660 0.608035 TTGCTGTTCCCCGGATGTTC 60.608 55.000 0.73 0.00 0.00 3.18
5318 5661 0.039618 ATTGCTGTTCCCCGGATGTT 59.960 50.000 0.73 0.00 0.00 2.71
5348 5692 2.336945 TTGCCATTGCGATCAGAGAT 57.663 45.000 0.00 0.00 41.78 2.75
5381 5729 7.989826 AGTTATTTTCAGCATCCAGTACATTC 58.010 34.615 0.00 0.00 0.00 2.67
5425 5774 1.824852 CCCTCCCTGTAATTTGTTGGC 59.175 52.381 0.00 0.00 0.00 4.52
5440 5789 0.616891 TTTCTTAGCGGAACCCCTCC 59.383 55.000 0.00 0.00 41.40 4.30
5441 5790 1.553704 TCTTTCTTAGCGGAACCCCTC 59.446 52.381 0.00 0.00 0.00 4.30
5442 5791 1.652947 TCTTTCTTAGCGGAACCCCT 58.347 50.000 0.00 0.00 0.00 4.79
5445 5794 2.423577 TGCTTCTTTCTTAGCGGAACC 58.576 47.619 0.00 0.00 40.26 3.62
5447 5796 3.472652 TGTTGCTTCTTTCTTAGCGGAA 58.527 40.909 0.00 0.00 40.26 4.30
5450 5799 3.665871 GCTTTGTTGCTTCTTTCTTAGCG 59.334 43.478 0.00 0.00 40.26 4.26
5451 5800 4.610945 TGCTTTGTTGCTTCTTTCTTAGC 58.389 39.130 0.00 0.00 37.89 3.09
5452 5801 7.357859 CGATTTGCTTTGTTGCTTCTTTCTTAG 60.358 37.037 0.00 0.00 0.00 2.18
5484 5838 2.563620 TGTCGCTCAGTTACCATACCAA 59.436 45.455 0.00 0.00 0.00 3.67
5485 5839 2.172679 TGTCGCTCAGTTACCATACCA 58.827 47.619 0.00 0.00 0.00 3.25
5486 5840 2.953466 TGTCGCTCAGTTACCATACC 57.047 50.000 0.00 0.00 0.00 2.73
5487 5841 3.123804 CCATGTCGCTCAGTTACCATAC 58.876 50.000 0.00 0.00 0.00 2.39
5488 5842 2.764010 ACCATGTCGCTCAGTTACCATA 59.236 45.455 0.00 0.00 0.00 2.74
5489 5843 1.555075 ACCATGTCGCTCAGTTACCAT 59.445 47.619 0.00 0.00 0.00 3.55
5513 5867 7.615365 ACATCTTGGATTTGGCTTAATTCTGTA 59.385 33.333 0.00 0.00 0.00 2.74
5558 5912 3.401411 GCTGCTCGCCATCGATCG 61.401 66.667 9.36 9.36 44.56 3.69
5559 5913 2.028778 AGCTGCTCGCCATCGATC 59.971 61.111 0.00 0.00 44.56 3.69
5560 5914 2.279985 CAGCTGCTCGCCATCGAT 60.280 61.111 0.00 0.00 44.56 3.59
5668 6022 3.803778 CCCTCTGCATGTTTTGTTTGTTC 59.196 43.478 0.00 0.00 0.00 3.18
5683 6037 1.323271 TGTCCGTCTGATCCCTCTGC 61.323 60.000 0.00 0.00 0.00 4.26
5688 6042 2.100989 AGTAACTGTCCGTCTGATCCC 58.899 52.381 0.00 0.00 0.00 3.85
5699 6053 7.042797 TCCATTACCCGTATTAGTAACTGTC 57.957 40.000 0.00 0.00 31.61 3.51
5704 6058 7.784550 ACCTAACTCCATTACCCGTATTAGTAA 59.215 37.037 0.00 0.00 33.26 2.24
5869 6226 3.464494 AACTACTACCCGCCGCCC 61.464 66.667 0.00 0.00 0.00 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.