AutoCloner

Multiple sequence alignment - TraesCS2A01G419900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G419900	chr2A	100.000	6594	0	0	1	6594	675901970	675895377	0.000000e+00	12177.0
1	TraesCS2A01G419900	chr2A	77.134	1347	251	44	4171	5481	675748231	675746906	0.000000e+00	728.0
2	TraesCS2A01G419900	chr2A	78.663	1017	177	33	4468	5461	675081121	675080122	2.000000e-179	640.0
3	TraesCS2A01G419900	chr2A	100.000	41	0	0	3628	3668	675898250	675898210	7.090000e-10	76.8
4	TraesCS2A01G419900	chr2A	100.000	41	0	0	3721	3761	675898343	675898303	7.090000e-10	76.8
5	TraesCS2A01G419900	chr2A	89.583	48	2	3	3843	3890	645315696	645315652	2.570000e-04	58.4
6	TraesCS2A01G419900	chr2D	97.398	2882	49	10	3732	6594	531349799	531346925	0.000000e+00	4883.0
7	TraesCS2A01G419900	chr2D	94.618	1765	66	11	598	2342	531353046	531351291	0.000000e+00	2706.0
8	TraesCS2A01G419900	chr2D	97.584	1407	26	5	2341	3747	531351209	531349811	0.000000e+00	2403.0
9	TraesCS2A01G419900	chr2D	78.896	1033	186	26	4468	5481	530260019	530259000	0.000000e+00	671.0
10	TraesCS2A01G419900	chr2D	76.026	1364	247	52	4269	5597	531264246	531262928	9.330000e-178	634.0
11	TraesCS2A01G419900	chr2D	91.781	73	5	1	3653	3725	85925894	85925965	4.210000e-17	100.0
12	TraesCS2A01G419900	chr2D	100.000	41	0	0	3721	3761	531349930	531349890	7.090000e-10	76.8
13	TraesCS2A01G419900	chr2D	100.000	30	0	0	3639	3668	531349799	531349770	1.000000e-03	56.5
14	TraesCS2A01G419900	chr2B	97.994	2791	45	6	3811	6594	631204478	631201692	0.000000e+00	4833.0
15	TraesCS2A01G419900	chr2B	94.236	3192	96	25	602	3761	631208002	631204867	0.000000e+00	4795.0
16	TraesCS2A01G419900	chr2B	77.660	1034	200	25	4468	5481	630136894	630135872	9.460000e-168	601.0
17	TraesCS2A01G419900	chr2B	95.833	96	4	0	3628	3723	631204907	631204812	8.850000e-34	156.0
18	TraesCS2A01G419900	chr2B	95.652	92	4	0	5819	5910	793961397	793961306	1.480000e-31	148.0
19	TraesCS2A01G419900	chr2B	84.375	128	14	5	6462	6588	796786548	796786426	3.230000e-23	121.0
20	TraesCS2A01G419900	chr2B	83.594	128	15	5	6462	6588	630591707	630591585	1.500000e-21	115.0
21	TraesCS2A01G419900	chr2B	98.333	60	1	0	3664	3723	309475386	309475445	9.040000e-19	106.0
22	TraesCS2A01G419900	chr2B	100.000	41	0	0	3721	3761	631205000	631204960	7.090000e-10	76.8
23	TraesCS2A01G419900	chr5A	94.471	1881	59	16	1313	3173	546803335	546805190	0.000000e+00	2856.0
24	TraesCS2A01G419900	chr5A	84.211	133	18	3	6462	6594	70422882	70422753	6.940000e-25	126.0
25	TraesCS2A01G419900	chr5A	98.361	61	1	0	3665	3725	632901304	632901244	2.510000e-19	108.0
26	TraesCS2A01G419900	chr5A	97.368	38	1	0	3853	3890	169297868	169297905	1.530000e-06	65.8
27	TraesCS2A01G419900	chrUn	89.769	606	54	5	1	605	132216395	132216993	0.000000e+00	769.0
28	TraesCS2A01G419900	chrUn	87.793	598	68	3	1	597	124555039	124554446	0.000000e+00	695.0
29	TraesCS2A01G419900	chr7A	88.963	598	57	6	1	597	626927621	626928210	0.000000e+00	730.0
30	TraesCS2A01G419900	chr7A	93.233	133	8	1	6462	6594	731007956	731008087	1.880000e-45	195.0
31	TraesCS2A01G419900	chr7A	92.366	131	9	1	6462	6592	159421499	159421370	1.130000e-42	185.0
32	TraesCS2A01G419900	chr7B	86.634	606	64	10	1	599	34706362	34706957	0.000000e+00	654.0
33	TraesCS2A01G419900	chr7B	86.477	599	72	7	1	597	578788005	578788596	0.000000e+00	649.0
34	TraesCS2A01G419900	chr7B	85.938	128	13	4	6462	6588	117650492	117650369	1.490000e-26	132.0
35	TraesCS2A01G419900	chr7B	90.566	53	3	1	3833	3885	2433643	2433593	1.190000e-07	69.4
36	TraesCS2A01G419900	chr7B	97.368	38	1	0	3853	3890	559531977	559532014	1.530000e-06	65.8
37	TraesCS2A01G419900	chr3B	86.667	600	69	8	1	597	807156302	807155711	0.000000e+00	654.0
38	TraesCS2A01G419900	chr3B	98.333	60	1	0	3664	3723	730758410	730758351	9.040000e-19	106.0
39	TraesCS2A01G419900	chr4B	86.522	601	67	10	1	597	635615281	635615871	0.000000e+00	649.0
40	TraesCS2A01G419900	chr4B	96.923	65	2	0	3661	3725	106975949	106975885	6.990000e-20	110.0
41	TraesCS2A01G419900	chr4B	72.964	307	68	12	5155	5458	40222628	40222922	7.040000e-15	93.5
42	TraesCS2A01G419900	chr3A	85.784	619	75	11	1	616	738492566	738491958	1.550000e-180	643.0
43	TraesCS2A01G419900	chr3A	85.484	620	76	12	1	616	738665267	738664658	9.330000e-178	634.0
44	TraesCS2A01G419900	chr3A	85.484	124	15	3	6462	6585	682000680	682000800	6.940000e-25	126.0
45	TraesCS2A01G419900	chr3A	100.000	36	0	0	3855	3890	564934766	564934801	4.270000e-07	67.6
46	TraesCS2A01G419900	chr5B	92.958	71	3	2	3654	3723	296852564	296852633	1.170000e-17	102.0
47	TraesCS2A01G419900	chr1A	97.368	38	1	0	3853	3890	330766898	330766935	1.530000e-06	65.8
48	TraesCS2A01G419900	chr1B	95.000	40	2	0	3851	3890	472472564	472472525	5.520000e-06	63.9

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G419900	chr2A	675895377	675901970	6593	True	4110.20	12177	100.00000	1	6594	3	chr2A.!!$R4	6593
1	TraesCS2A01G419900	chr2A	675746906	675748231	1325	True	728.00	728	77.13400	4171	5481	1	chr2A.!!$R3	1310
2	TraesCS2A01G419900	chr2A	675080122	675081121	999	True	640.00	640	78.66300	4468	5461	1	chr2A.!!$R2	993
3	TraesCS2A01G419900	chr2D	531346925	531353046	6121	True	2025.06	4883	97.92000	598	6594	5	chr2D.!!$R3	5996
4	TraesCS2A01G419900	chr2D	530259000	530260019	1019	True	671.00	671	78.89600	4468	5481	1	chr2D.!!$R1	1013
5	TraesCS2A01G419900	chr2D	531262928	531264246	1318	True	634.00	634	76.02600	4269	5597	1	chr2D.!!$R2	1328
6	TraesCS2A01G419900	chr2B	631201692	631208002	6310	True	2465.20	4833	97.01575	602	6594	4	chr2B.!!$R5	5992
7	TraesCS2A01G419900	chr2B	630135872	630136894	1022	True	601.00	601	77.66000	4468	5481	1	chr2B.!!$R1	1013
8	TraesCS2A01G419900	chr5A	546803335	546805190	1855	False	2856.00	2856	94.47100	1313	3173	1	chr5A.!!$F2	1860
9	TraesCS2A01G419900	chrUn	132216395	132216993	598	False	769.00	769	89.76900	1	605	1	chrUn.!!$F1	604
10	TraesCS2A01G419900	chrUn	124554446	124555039	593	True	695.00	695	87.79300	1	597	1	chrUn.!!$R1	596
11	TraesCS2A01G419900	chr7A	626927621	626928210	589	False	730.00	730	88.96300	1	597	1	chr7A.!!$F1	596
12	TraesCS2A01G419900	chr7B	34706362	34706957	595	False	654.00	654	86.63400	1	599	1	chr7B.!!$F1	598
13	TraesCS2A01G419900	chr7B	578788005	578788596	591	False	649.00	649	86.47700	1	597	1	chr7B.!!$F3	596
14	TraesCS2A01G419900	chr3B	807155711	807156302	591	True	654.00	654	86.66700	1	597	1	chr3B.!!$R2	596
15	TraesCS2A01G419900	chr4B	635615281	635615871	590	False	649.00	649	86.52200	1	597	1	chr4B.!!$F2	596
16	TraesCS2A01G419900	chr3A	738491958	738492566	608	True	643.00	643	85.78400	1	616	1	chr3A.!!$R1	615
17	TraesCS2A01G419900	chr3A	738664658	738665267	609	True	634.00	634	85.48400	1	616	1	chr3A.!!$R2	615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Hairpin	End Stability	Orientation
912	925	0.107993	CTGCCATTCCTCTGCTTCGA	60.108	55.000	0.00	0.00	3.71	F
1535	1560	0.681887	TCTGGATCCGTCGGTAAGCA	60.682	55.000	11.88	0.00	3.91	F
1663	1690	2.882137	ACGGTATGGTTCCACTTGTTTG	59.118	45.455	0.00	0.00	2.93	F
3226	3352	1.234821	CTCAAAGGCCAGCGTGTTAA	58.765	50.000	5.01	0.00	2.01	F
4050	4553	4.661222	TGCAAAGGGACAATATGAACTCA	58.339	39.130	0.00	0.00	3.41	F
4519	5036	0.603975	ACGAGGAGCTGAACAAAGCC	60.604	55.000	0.00	44.68	4.35	F

Position	MSA Position	Penalty	Sequence	TM	GC	Hairpin	End Stability	Orientation
1745	1772	2.538939	GCCGAACAAAATAGATCGCACC	60.539	50.0	33.19	5.01	R
3155	3281	0.881796	TCAGTGCTGTCCTGTAGTCG	59.118	55.0	0.00	4.18	R
3453	3579	5.398353	CCATTGGATACCTCTGTCCTTCAAT	60.398	44.0	35.49	2.57	R
4294	4802	0.523519	GTGCTTTGCCTTCTACCAGC	59.476	55.0	0.00	4.85	R
5342	5899	0.472044	TTGTACACCAGCCTCTGCAA	59.528	50.0	41.13	4.08	R
5811	6378	2.094182	TCCGAAGATACAGTCAAGCCAC	60.094	50.0	0.00	5.01	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
38	40	6.672266	TCAACCTAAGCAATCCTAGGATAG	57.328	41.667	24.78	16.76	38.80	2.08
40	42	6.267928	TCAACCTAAGCAATCCTAGGATAGAC	59.732	42.308	24.78	16.09	42.77	2.59
195	197	3.253188	TGGCAAAACAAAGAAGATCGGAG	59.747	43.478	0.00	0.00	0.00	4.63
247	253	1.373497	CTCTCTGTTCTTGCGGCGT	60.373	57.895	9.37	0.00	0.00	5.68
489	496	1.215173	TGGTAGCCTGCATTTGCCTAT	59.785	47.619	0.00	0.00	41.18	2.57
494	501	0.820891	CCTGCATTTGCCTATCGCCT	60.821	55.000	0.00	0.00	41.18	5.52
497	504	1.024271	GCATTTGCCTATCGCCTTGA	58.976	50.000	0.00	0.00	36.24	3.02
500	507	2.708216	TTTGCCTATCGCCTTGATCA	57.292	45.000	0.00	0.00	38.57	2.92
511	518	1.475034	GCCTTGATCATTGGCGGTAGA	60.475	52.381	19.91	0.00	37.11	2.59
526	533	4.643334	GGCGGTAGATAAAAGGGTCAAATT	59.357	41.667	0.00	0.00	0.00	1.82
568	576	4.876107	GGGTCAGATCTCGCTTATTTTTGA	59.124	41.667	0.00	0.00	0.00	2.69
574	582	8.349245	TCAGATCTCGCTTATTTTTGACAAAAA	58.651	29.630	24.27	24.27	43.76	1.94
675	687	3.371063	GGCAGACGACCGAGACCA	61.371	66.667	0.00	0.00	0.00	4.02
743	755	3.256631	ACTTGCATTGACTGATGTTTCCC	59.743	43.478	0.00	0.00	0.00	3.97
756	768	1.065272	TGTTTCCCGTTATACCCCTGC	60.065	52.381	0.00	0.00	0.00	4.85
794	807	0.830648	CCGCTCCAACTCCTTATCCA	59.169	55.000	0.00	0.00	0.00	3.41
803	816	1.897802	ACTCCTTATCCACGAAACCGT	59.102	47.619	0.00	0.00	41.53	4.83
810	823	2.358247	CACGAAACCGTCAGGGGG	60.358	66.667	0.00	0.00	43.47	5.40
912	925	0.107993	CTGCCATTCCTCTGCTTCGA	60.108	55.000	0.00	0.00	0.00	3.71
932	945	2.941720	GAGCCGAAGCATCAGAGAAAAT	59.058	45.455	0.00	0.00	43.56	1.82
991	1004	1.203052	CTGTCTCGCCGTTAGGGTTTA	59.797	52.381	0.00	0.00	38.44	2.01
1449	1462	1.306397	AGGACCCGGGGAATACGTT	60.306	57.895	27.92	0.00	0.00	3.99
1535	1560	0.681887	TCTGGATCCGTCGGTAAGCA	60.682	55.000	11.88	0.00	0.00	3.91
1600	1627	5.768317	CAATGTTCAATACCTTGACGGTTT	58.232	37.500	0.00	0.00	46.37	3.27
1641	1668	4.801330	TGTGACGGTGAATTGAGTCTAT	57.199	40.909	0.00	0.00	34.92	1.98
1663	1690	2.882137	ACGGTATGGTTCCACTTGTTTG	59.118	45.455	0.00	0.00	0.00	2.93
1745	1772	3.819564	TCGTTGACTAGAATGATGGGG	57.180	47.619	0.00	0.00	0.00	4.96
1848	1882	6.927933	TCGTAGCATTGTGTGATTATATCG	57.072	37.500	0.00	0.00	0.00	2.92
1914	1949	5.309638	TGAGTTCGGTATGGATTGAACAAA	58.690	37.500	6.70	0.00	42.35	2.83
2196	2238	4.999950	AGGATACAGAGCACTTGTGAAAAG	59.000	41.667	4.79	0.00	41.41	2.27
2282	2324	8.919145	TCAGACACTGTTTAATTTTACCCAAAT	58.081	29.630	0.00	0.00	33.08	2.32
2615	2741	3.118775	ACCCAAAGCTGTCAACCTTTTTC	60.119	43.478	0.00	0.00	0.00	2.29
2820	2946	5.733620	AGGTTTATTCCGTGTCAGAGTTA	57.266	39.130	0.00	0.00	0.00	2.24
3155	3281	3.204606	AGTTTATAAAGCCCCTTCCCCTC	59.795	47.826	0.00	0.00	0.00	4.30
3226	3352	1.234821	CTCAAAGGCCAGCGTGTTAA	58.765	50.000	5.01	0.00	0.00	2.01
4036	4539	6.748132	TCTGTCTTATTTCTTTTGCAAAGGG	58.252	36.000	19.84	13.29	0.00	3.95
4043	4546	9.657419	CTTATTTCTTTTGCAAAGGGACAATAT	57.343	29.630	19.84	5.72	0.00	1.28
4050	4553	4.661222	TGCAAAGGGACAATATGAACTCA	58.339	39.130	0.00	0.00	0.00	3.41
4051	4554	4.701651	TGCAAAGGGACAATATGAACTCAG	59.298	41.667	0.00	0.00	0.00	3.35
4052	4555	4.702131	GCAAAGGGACAATATGAACTCAGT	59.298	41.667	0.00	0.00	0.00	3.41
4294	4802	1.635487	TGGAACCTCATGGGGAAGAAG	59.365	52.381	21.59	0.00	40.03	2.85
4466	4983	3.940852	AGCATGTTTTGTGCATCTATCGA	59.059	39.130	0.00	0.00	44.87	3.59
4519	5036	0.603975	ACGAGGAGCTGAACAAAGCC	60.604	55.000	0.00	0.00	44.68	4.35
4726	5249	3.748083	TCTCAAGATCAACAGCAAGCTT	58.252	40.909	0.00	0.00	0.00	3.74
4954	5480	0.606096	TCGGCGAGATTGTCCAAGAA	59.394	50.000	4.99	0.00	0.00	2.52
5342	5899	3.130160	GCTACGGGTCGGACGACT	61.130	66.667	22.16	7.46	44.04	4.18
5401	5958	1.078497	CTGCACCAAGCCCGTATCA	60.078	57.895	0.00	0.00	44.83	2.15
5640	6206	0.978907	GGGTCTTGGTCGGGTAGAAA	59.021	55.000	0.00	0.00	0.00	2.52
5766	6332	1.333619	GTGTCATTGTCCGTGTGCTTT	59.666	47.619	0.00	0.00	0.00	3.51
5807	6374	1.103398	GCTGTGTTGGTTGCCTGACT	61.103	55.000	0.00	0.00	0.00	3.41
5809	6376	1.750778	CTGTGTTGGTTGCCTGACTTT	59.249	47.619	0.00	0.00	0.00	2.66
5810	6377	1.476085	TGTGTTGGTTGCCTGACTTTG	59.524	47.619	0.00	0.00	0.00	2.77
5811	6378	1.110442	TGTTGGTTGCCTGACTTTGG	58.890	50.000	0.00	0.00	0.00	3.28
5829	6396	3.334583	TGGTGGCTTGACTGTATCTTC	57.665	47.619	0.00	0.00	0.00	2.87
6570	7151	6.209192	TGACGGATTCTAGTACCAGTTTACAA	59.791	38.462	0.00	0.00	0.00	2.41

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
307	313	1.207570	TGAAACCTTATAAGCCCGCGA	59.792	47.619	8.23	0.00	0.00	5.87
399	406	0.179081	GACGGAACAGTATCCTGCCC	60.179	60.000	0.00	0.00	42.81	5.36
407	414	2.490903	GCCTCAAGTAGACGGAACAGTA	59.509	50.000	0.00	0.00	0.00	2.74
410	417	1.272490	CAGCCTCAAGTAGACGGAACA	59.728	52.381	0.00	0.00	0.00	3.18
458	465	1.612442	GGCTACCACCACAGGGAGA	60.612	63.158	0.00	0.00	42.70	3.71
459	466	1.613630	AGGCTACCACCACAGGGAG	60.614	63.158	0.00	0.00	42.97	4.30
460	467	1.918293	CAGGCTACCACCACAGGGA	60.918	63.158	0.00	0.00	38.05	4.20
461	468	2.671070	CAGGCTACCACCACAGGG	59.329	66.667	0.00	0.00	41.29	4.45
494	501	5.530915	CCTTTTATCTACCGCCAATGATCAA	59.469	40.000	0.00	0.00	0.00	2.57
497	504	4.141251	ACCCTTTTATCTACCGCCAATGAT	60.141	41.667	0.00	0.00	0.00	2.45
500	507	3.201266	TGACCCTTTTATCTACCGCCAAT	59.799	43.478	0.00	0.00	0.00	3.16
526	533	6.184068	TGACCCATATTCGAAATCTTTTGGA	58.816	36.000	0.00	0.00	0.00	3.53
568	576	7.294473	CAAATTTCGTGTTTTGACCTTTTTGT	58.706	30.769	0.00	0.00	35.34	2.83
574	582	3.453424	GCCAAATTTCGTGTTTTGACCT	58.547	40.909	7.82	0.00	35.34	3.85
712	724	3.064324	AATGCAAGTCAGGCCGGC	61.064	61.111	21.18	21.18	0.00	6.13
743	755	1.153529	TGTGCGCAGGGGTATAACG	60.154	57.895	12.22	0.00	0.00	3.18
803	816	2.576191	CAGTTCCAATTCTACCCCCTGA	59.424	50.000	0.00	0.00	0.00	3.86
810	823	0.733150	GCGGGCAGTTCCAATTCTAC	59.267	55.000	0.00	0.00	36.21	2.59
836	849	4.415332	GGGTTCGTGAGCGCGAGA	62.415	66.667	12.10	0.00	42.10	4.04
912	925	2.479566	TTTTCTCTGATGCTTCGGCT	57.520	45.000	3.54	0.00	42.37	5.52
932	945	6.098982	TGGCTAAGGAAAGTTTTGGATCAAAA	59.901	34.615	0.00	0.00	40.41	2.44
991	1004	1.046472	TCGTAATCCATCCCCACGCT	61.046	55.000	0.00	0.00	32.85	5.07
1086	1099	2.901042	CCTCCTTGAGGCCCGTAC	59.099	66.667	0.00	0.00	43.29	3.67
1535	1560	1.351350	GTTAAGCAGGACAGGGGAAGT	59.649	52.381	0.00	0.00	0.00	3.01
1600	1627	7.103641	GTCACAAATCCCTAGATTACTTGACA	58.896	38.462	13.83	0.00	42.03	3.58
1641	1668	4.066490	CAAACAAGTGGAACCATACCGTA	58.934	43.478	0.00	0.00	37.80	4.02
1663	1690	0.447801	AACGCCTTGATCAATCGCAC	59.552	50.000	22.28	6.68	0.00	5.34
1692	1719	3.304996	CCTGCTATACCATCGACACAGAG	60.305	52.174	0.00	0.00	0.00	3.35
1745	1772	2.538939	GCCGAACAAAATAGATCGCACC	60.539	50.000	0.00	0.00	33.19	5.01
1848	1882	7.822658	AGCTAACTCGAGGAAGATGATATTAC	58.177	38.462	18.41	0.00	0.00	1.89
1856	1890	4.538738	ACCTAAGCTAACTCGAGGAAGAT	58.461	43.478	18.41	9.31	34.43	2.40
1893	1927	7.931578	TTATTTGTTCAATCCATACCGAACT	57.068	32.000	0.00	0.00	38.80	3.01
2196	2238	4.317530	ACCTGAAATCCTAGTTTTCCCC	57.682	45.455	11.02	0.00	33.15	4.81
2472	2598	4.101448	AGCAACTGGGGGCGCTAG	62.101	66.667	13.39	13.39	31.60	3.42
2615	2741	9.987272	TCAAACTTGATATCTATGTCATAGTGG	57.013	33.333	17.55	6.05	31.70	4.00
2820	2946	7.680730	ACTGATACAATGTAGGTCTTTGAACT	58.319	34.615	0.00	0.00	35.84	3.01
3155	3281	0.881796	TCAGTGCTGTCCTGTAGTCG	59.118	55.000	0.00	0.00	0.00	4.18
3453	3579	5.398353	CCATTGGATACCTCTGTCCTTCAAT	60.398	44.000	0.00	0.00	35.49	2.57
3620	3746	6.630071	ACAGATGGTTATACATTTGCAAACC	58.370	36.000	15.41	10.65	36.67	3.27
3672	3798	4.398358	CGCTCTTATATTATGGGACGGAGA	59.602	45.833	0.00	0.00	0.00	3.71
4036	4539	9.593134	AAGATCTGTTACTGAGTTCATATTGTC	57.407	33.333	0.00	0.00	0.00	3.18
4294	4802	0.523519	GTGCTTTGCCTTCTACCAGC	59.476	55.000	0.00	0.00	0.00	4.85
4466	4983	4.162888	TGGATCTGATAGCACTGACATTGT	59.837	41.667	0.00	0.00	0.00	2.71
4519	5036	2.974489	CTTCACCGCAGCCTGCTTG	61.974	63.158	15.80	11.67	42.25	4.01
4726	5249	3.253061	TGGACGTTGATGCCCCCA	61.253	61.111	0.00	0.00	0.00	4.96
4954	5480	3.574396	TCTTCTCAAAGACACCGATGAGT	59.426	43.478	0.00	0.00	40.11	3.41
5269	5826	4.399764	CTGGTCCCTATCAGCCCA	57.600	61.111	0.00	0.00	0.00	5.36
5342	5899	0.472044	TTGTACACCAGCCTCTGCAA	59.528	50.000	0.00	0.00	41.13	4.08
5766	6332	8.591072	ACAGCTATAGTTAAAAACACAGACCTA	58.409	33.333	0.84	0.00	0.00	3.08
5807	6374	3.788227	AGATACAGTCAAGCCACCAAA	57.212	42.857	0.00	0.00	0.00	3.28
5809	6376	2.353704	CGAAGATACAGTCAAGCCACCA	60.354	50.000	0.00	0.00	0.00	4.17
5810	6377	2.271800	CGAAGATACAGTCAAGCCACC	58.728	52.381	0.00	0.00	0.00	4.61
5811	6378	2.094182	TCCGAAGATACAGTCAAGCCAC	60.094	50.000	0.00	0.00	0.00	5.01
5829	6396	5.761726	TGGAATTTCATCATCAGAATCTCCG	59.238	40.000	0.00	0.00	32.70	4.63
6467	7048	2.224867	ACACACTCTTGAAATCCTGGGG	60.225	50.000	0.00	0.00	0.00	4.96

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.