Multiple sequence alignment - TraesCS2A01G419800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G419800 chr2A 100.000 4540 0 0 1 4540 675750296 675745757 0.000000e+00 8384.0
1 TraesCS2A01G419800 chr2A 94.407 1037 52 4 2367 3400 675081126 675080093 0.000000e+00 1589.0
2 TraesCS2A01G419800 chr2A 77.134 1347 251 44 2066 3391 675897800 675896490 0.000000e+00 728.0
3 TraesCS2A01G419800 chr2A 93.130 131 6 3 3651 3779 675746602 675746473 6.000000e-44 189.0
4 TraesCS2A01G419800 chr2A 93.130 131 6 3 3695 3824 675746646 675746518 6.000000e-44 189.0
5 TraesCS2A01G419800 chr2A 89.726 146 10 4 3876 4017 675885099 675884955 1.000000e-41 182.0
6 TraesCS2A01G419800 chr2A 93.814 97 5 1 4130 4225 675735723 675735627 1.320000e-30 145.0
7 TraesCS2A01G419800 chr2A 80.189 212 24 9 4264 4463 745393063 745393268 4.730000e-30 143.0
8 TraesCS2A01G419800 chr2A 97.778 45 1 0 3484 3528 675746769 675746725 1.350000e-10 78.7
9 TraesCS2A01G419800 chr2A 97.778 45 1 0 3528 3572 675746813 675746769 1.350000e-10 78.7
10 TraesCS2A01G419800 chr2A 97.059 34 1 0 4291 4324 745395697 745395730 1.760000e-04 58.4
11 TraesCS2A01G419800 chr2D 97.476 3486 52 6 1 3485 531266406 531262956 0.000000e+00 5917.0
12 TraesCS2A01G419800 chr2D 94.214 1037 54 4 2367 3400 530260024 530258991 0.000000e+00 1578.0
13 TraesCS2A01G419800 chr2D 93.558 683 30 8 3529 4209 531262942 531262272 0.000000e+00 1005.0
14 TraesCS2A01G419800 chr2D 98.813 337 4 0 4204 4540 531260151 531259815 6.500000e-168 601.0
15 TraesCS2A01G419800 chr2D 72.993 1059 213 50 639 1673 530261687 530260678 2.050000e-78 303.0
16 TraesCS2A01G419800 chr2D 88.435 147 11 5 3876 4017 531335069 531334924 6.040000e-39 172.0
17 TraesCS2A01G419800 chr2D 80.583 206 24 7 4270 4463 615384379 615384580 1.320000e-30 145.0
18 TraesCS2A01G419800 chr2D 92.857 98 4 3 4130 4225 531258357 531258261 6.120000e-29 139.0
19 TraesCS2A01G419800 chr2B 91.249 3371 199 42 438 3779 631104809 631101506 0.000000e+00 4503.0
20 TraesCS2A01G419800 chr2B 91.250 1040 82 5 2367 3400 630136899 630135863 0.000000e+00 1408.0
21 TraesCS2A01G419800 chr2B 77.522 1348 244 45 2066 3391 631204113 631202803 0.000000e+00 756.0
22 TraesCS2A01G419800 chr2B 97.203 429 11 1 7 435 631105303 631104876 0.000000e+00 725.0
23 TraesCS2A01G419800 chr2B 90.659 364 25 7 3695 4054 631101630 631101272 4.110000e-130 475.0
24 TraesCS2A01G419800 chr2B 94.811 212 9 2 4127 4336 631101274 631101063 3.390000e-86 329.0
25 TraesCS2A01G419800 chr2B 73.175 1055 221 42 639 1673 630138564 630137552 1.580000e-84 324.0
26 TraesCS2A01G419800 chr2B 94.152 171 10 0 4370 4540 631101066 631100896 1.250000e-65 261.0
27 TraesCS2A01G419800 chr2B 88.435 147 11 4 3876 4017 631175694 631175549 6.040000e-39 172.0
28 TraesCS2A01G419800 chr2B 94.737 38 0 2 4047 4083 712655297 712655333 1.760000e-04 58.4
29 TraesCS2A01G419800 chr4A 83.756 197 25 7 3857 4049 551215984 551215791 3.610000e-41 180.0
30 TraesCS2A01G419800 chr4B 82.266 203 26 7 3854 4048 68895125 68895325 2.810000e-37 167.0
31 TraesCS2A01G419800 chr4B 82.234 197 25 9 3854 4048 68669938 68670126 1.310000e-35 161.0
32 TraesCS2A01G419800 chr4B 93.750 48 3 0 4193 4240 68670210 68670257 6.300000e-09 73.1
33 TraesCS2A01G419800 chr4B 93.750 48 3 0 4193 4240 68895411 68895458 6.300000e-09 73.1
34 TraesCS2A01G419800 chr3B 86.667 120 9 2 3173 3286 732058711 732058593 4.770000e-25 126.0
35 TraesCS2A01G419800 chr3D 97.222 36 1 0 4046 4081 32282410 32282445 1.360000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G419800 chr2A 675745757 675750296 4539 True 1783.88 8384 96.3632 1 4540 5 chr2A.!!$R5 4539
1 TraesCS2A01G419800 chr2A 675080093 675081126 1033 True 1589.00 1589 94.4070 2367 3400 1 chr2A.!!$R1 1033
2 TraesCS2A01G419800 chr2A 675896490 675897800 1310 True 728.00 728 77.1340 2066 3391 1 chr2A.!!$R4 1325
3 TraesCS2A01G419800 chr2D 531258261 531266406 8145 True 1915.50 5917 95.6760 1 4540 4 chr2D.!!$R3 4539
4 TraesCS2A01G419800 chr2D 530258991 530261687 2696 True 940.50 1578 83.6035 639 3400 2 chr2D.!!$R2 2761
5 TraesCS2A01G419800 chr2B 631100896 631105303 4407 True 1258.60 4503 93.6148 7 4540 5 chr2B.!!$R4 4533
6 TraesCS2A01G419800 chr2B 630135863 630138564 2701 True 866.00 1408 82.2125 639 3400 2 chr2B.!!$R3 2761
7 TraesCS2A01G419800 chr2B 631202803 631204113 1310 True 756.00 756 77.5220 2066 3391 1 chr2B.!!$R2 1325

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
285 286 0.251297 TGGTTTGGAGTCAGCATGGG 60.251 55.0 0.0 0.0 36.16 4.00 F
618 684 0.394565 GCTATGGGATCGAGCTTGGT 59.605 55.0 0.0 0.0 33.28 3.67 F
2235 2395 0.250234 CTGGGGCATTCTCGACTTCA 59.750 55.0 0.0 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1515 1611 0.038801 GCTTGTCCTTTGGCTTCTGC 60.039 55.0 0.0 0.0 38.76 4.26 R
2239 2399 0.110056 GTGAGATGGCGTTGCACTTG 60.110 55.0 0.0 0.0 0.00 3.16 R
3575 3744 0.385223 CACAAGAAGCAGAACGCAGC 60.385 55.0 0.0 0.0 46.13 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
285 286 0.251297 TGGTTTGGAGTCAGCATGGG 60.251 55.000 0.00 0.00 36.16 4.00
618 684 0.394565 GCTATGGGATCGAGCTTGGT 59.605 55.000 0.00 0.00 33.28 3.67
1044 1137 2.281208 GGGCTGGTGTTGTGCGTA 60.281 61.111 0.00 0.00 0.00 4.42
1087 1180 1.405526 GCCGAGATGGAAGCAGTGTTA 60.406 52.381 0.00 0.00 42.00 2.41
1290 1386 1.692411 AGGTTCAAGGTTTGACAGCC 58.308 50.000 0.00 0.00 39.87 4.85
1500 1596 5.629133 GCAGAAGTATCCCAAGGACAATACA 60.629 44.000 0.00 0.00 32.98 2.29
1515 1611 4.398319 ACAATACACTCAAGGGTTCCAAG 58.602 43.478 0.00 0.00 0.00 3.61
1526 1622 1.039856 GGTTCCAAGCAGAAGCCAAA 58.960 50.000 2.88 0.00 43.56 3.28
1694 1793 8.337741 GTCAAACCTGACGACTTAATCTATAC 57.662 38.462 0.00 0.00 42.54 1.47
1728 1837 8.734218 TATTTGTTAAATCCAATGCAATGCAT 57.266 26.923 15.88 15.88 40.44 3.96
2149 2306 0.776451 CGCCGCGACTACAATATCAC 59.224 55.000 8.23 0.00 0.00 3.06
2235 2395 0.250234 CTGGGGCATTCTCGACTTCA 59.750 55.000 0.00 0.00 0.00 3.02
2236 2396 0.250234 TGGGGCATTCTCGACTTCAG 59.750 55.000 0.00 0.00 0.00 3.02
2237 2397 0.250513 GGGGCATTCTCGACTTCAGT 59.749 55.000 0.00 0.00 0.00 3.41
2238 2398 1.363744 GGGCATTCTCGACTTCAGTG 58.636 55.000 0.00 0.00 0.00 3.66
2239 2399 0.723981 GGCATTCTCGACTTCAGTGC 59.276 55.000 0.00 0.00 0.00 4.40
2240 2400 1.432514 GCATTCTCGACTTCAGTGCA 58.567 50.000 0.00 0.00 0.00 4.57
2319 2479 3.932710 TCGCAATATTGTCAGGAAGTGTC 59.067 43.478 16.61 0.00 0.00 3.67
2340 2500 4.096984 GTCTTAACCTTGGCATTCAGATGG 59.903 45.833 0.00 0.00 33.72 3.51
2343 2503 1.019673 CCTTGGCATTCAGATGGACG 58.980 55.000 0.00 0.00 33.72 4.79
2350 2510 2.677902 GCATTCAGATGGACGGACAAGA 60.678 50.000 0.00 0.00 33.72 3.02
2355 2515 1.273606 AGATGGACGGACAAGACTGTG 59.726 52.381 0.00 0.00 35.30 3.66
3485 3654 1.446792 CGAGGTGCACGCTGATCTT 60.447 57.895 11.45 0.00 0.00 2.40
3486 3655 1.416813 CGAGGTGCACGCTGATCTTC 61.417 60.000 11.45 0.00 0.00 2.87
3488 3657 0.251354 AGGTGCACGCTGATCTTCAT 59.749 50.000 11.45 0.00 0.00 2.57
3489 3658 0.654683 GGTGCACGCTGATCTTCATC 59.345 55.000 11.45 0.00 0.00 2.92
3491 3660 1.938577 GTGCACGCTGATCTTCATCAT 59.061 47.619 0.00 0.00 38.42 2.45
3492 3661 2.033065 GTGCACGCTGATCTTCATCATC 60.033 50.000 0.00 0.00 38.42 2.92
3493 3662 2.159000 TGCACGCTGATCTTCATCATCT 60.159 45.455 0.00 0.00 38.42 2.90
3494 3663 2.221286 GCACGCTGATCTTCATCATCTG 59.779 50.000 0.00 0.00 38.42 2.90
3505 3674 0.109735 CATCATCTGATGCCGCATGC 60.110 55.000 11.49 7.91 44.44 4.06
3506 3675 0.250770 ATCATCTGATGCCGCATGCT 60.251 50.000 17.13 0.00 42.00 3.79
3507 3676 0.464916 TCATCTGATGCCGCATGCTT 60.465 50.000 17.13 0.00 42.00 3.91
3508 3677 0.384309 CATCTGATGCCGCATGCTTT 59.616 50.000 17.13 0.00 42.00 3.51
3509 3678 1.108776 ATCTGATGCCGCATGCTTTT 58.891 45.000 17.13 0.00 42.00 2.27
3510 3679 0.452987 TCTGATGCCGCATGCTTTTC 59.547 50.000 17.13 7.87 42.00 2.29
3511 3680 0.171679 CTGATGCCGCATGCTTTTCA 59.828 50.000 17.13 11.90 42.00 2.69
3512 3681 0.171679 TGATGCCGCATGCTTTTCAG 59.828 50.000 17.13 0.00 42.00 3.02
3525 3694 4.907879 GCTTTTCAGCATGGTATAAGCT 57.092 40.909 21.13 0.00 46.49 3.74
3526 3695 4.853268 GCTTTTCAGCATGGTATAAGCTC 58.147 43.478 21.13 3.99 46.49 4.09
3527 3696 4.261363 GCTTTTCAGCATGGTATAAGCTCC 60.261 45.833 21.13 0.00 46.49 4.70
3546 3715 1.660167 CTTCTTCATCTGATGCCGCA 58.340 50.000 12.78 0.00 0.00 5.69
3549 3718 0.040336 CTTCATCTGATGCCGCATGC 60.040 55.000 11.49 7.91 41.77 4.06
3575 3744 2.545526 CAGCATGGTATAAGCTCCAACG 59.454 50.000 0.00 0.00 36.26 4.10
3665 3834 8.028540 TGTTACATATTTGCTGTGTTCTGTAG 57.971 34.615 0.00 0.00 30.97 2.74
3684 3853 2.953020 AGATGCTCGTCAAACTGACTC 58.047 47.619 5.34 0.00 44.85 3.36
3685 3854 2.560542 AGATGCTCGTCAAACTGACTCT 59.439 45.455 5.34 0.00 44.85 3.24
3686 3855 2.890808 TGCTCGTCAAACTGACTCTT 57.109 45.000 5.34 0.00 44.85 2.85
3693 3862 3.802139 CGTCAAACTGACTCTTTACAGCA 59.198 43.478 5.34 0.00 44.85 4.41
3718 3887 3.059884 CTGTGTTTCTGTACATGCTCGT 58.940 45.455 0.00 0.00 0.00 4.18
3729 3898 1.200716 ACATGCTCGTCAAATTGGCTG 59.799 47.619 0.00 0.00 0.00 4.85
3801 3970 3.976942 GCTTTGCTGTGTTTCTGTACATG 59.023 43.478 0.00 0.00 0.00 3.21
3808 3977 1.270571 TGTTTCTGTACATGCTCGCCA 60.271 47.619 0.00 0.00 0.00 5.69
3813 3982 2.419673 TCTGTACATGCTCGCCAAATTG 59.580 45.455 0.00 0.00 0.00 2.32
3848 4017 3.969117 TGTTCTGCACACATTCTGTTC 57.031 42.857 0.00 0.00 0.00 3.18
3971 4141 0.972134 TGAGAACTGCAGTCCTGAGG 59.028 55.000 21.95 0.00 0.00 3.86
4060 4233 3.195825 GCACACAGTTACATACTCCCTCT 59.804 47.826 0.00 0.00 33.85 3.69
4073 4246 7.918076 ACATACTCCCTCTGTCTCAAAATAAA 58.082 34.615 0.00 0.00 0.00 1.40
4085 4258 6.368791 TGTCTCAAAATAAATGACTCACTCCG 59.631 38.462 0.00 0.00 0.00 4.63
4119 4292 1.664151 GACTCGCTTATTTTGGGACGG 59.336 52.381 0.00 0.00 0.00 4.79
4133 4306 0.392060 GGACGGAGCGGGTACAAAAT 60.392 55.000 0.00 0.00 0.00 1.82
4512 6813 1.077930 ATAGGCCTGCAGCAGTGTG 60.078 57.895 21.26 7.21 46.50 3.82
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
170 171 7.177878 ACAGTCCCAAAAAGAATCAGATACAT 58.822 34.615 0.00 0.00 0.00 2.29
285 286 3.871006 CCCAAAAGGCTCAAAGTTGTTTC 59.129 43.478 0.00 0.00 0.00 2.78
1044 1137 6.599638 GGCAAAACTCCATAACTGAATAGTCT 59.400 38.462 0.00 0.00 35.69 3.24
1087 1180 4.460382 CACCAAGTGCTTAACAAGATCCAT 59.540 41.667 0.00 0.00 0.00 3.41
1290 1386 1.083806 TGATAAGTTGCGCAGGCTCG 61.084 55.000 11.31 2.61 40.82 5.03
1500 1596 1.140312 TCTGCTTGGAACCCTTGAGT 58.860 50.000 0.00 0.00 0.00 3.41
1515 1611 0.038801 GCTTGTCCTTTGGCTTCTGC 60.039 55.000 0.00 0.00 38.76 4.26
1526 1622 0.976641 TGATTCGAGTGGCTTGTCCT 59.023 50.000 0.00 0.00 35.26 3.85
1694 1793 9.790433 CATTGGATTTAACAAATAAACAACACG 57.210 29.630 0.00 0.00 36.35 4.49
1728 1837 6.434028 ACCATTGAACTGAATAGCTAGCAAAA 59.566 34.615 18.83 1.78 0.00 2.44
2149 2306 2.031120 TCCACTGGCAGTTTTTCTTGG 58.969 47.619 19.43 14.37 0.00 3.61
2238 2398 1.154150 GAGATGGCGTTGCACTTGC 60.154 57.895 0.00 0.00 42.50 4.01
2239 2399 0.110056 GTGAGATGGCGTTGCACTTG 60.110 55.000 0.00 0.00 0.00 3.16
2240 2400 0.250467 AGTGAGATGGCGTTGCACTT 60.250 50.000 8.92 0.00 36.49 3.16
2275 2435 2.416747 TGAACTTGTCTCCATCAAGCG 58.583 47.619 5.72 0.00 43.97 4.68
2276 2436 4.436584 CGAATGAACTTGTCTCCATCAAGC 60.437 45.833 5.72 0.00 43.97 4.01
2277 2437 4.436584 GCGAATGAACTTGTCTCCATCAAG 60.437 45.833 4.45 4.45 45.15 3.02
2298 2458 3.935203 AGACACTTCCTGACAATATTGCG 59.065 43.478 15.48 4.41 0.00 4.85
2299 2459 5.886960 AAGACACTTCCTGACAATATTGC 57.113 39.130 15.48 8.85 0.00 3.56
2319 2479 4.096984 GTCCATCTGAATGCCAAGGTTAAG 59.903 45.833 0.00 0.00 0.00 1.85
2340 2500 1.593006 CACAACACAGTCTTGTCCGTC 59.407 52.381 0.00 0.00 34.62 4.79
2343 2503 0.304705 CGCACAACACAGTCTTGTCC 59.695 55.000 0.00 0.00 34.62 4.02
2350 2510 1.881252 GACCGACGCACAACACAGT 60.881 57.895 0.00 0.00 0.00 3.55
2355 2515 1.841663 ATTGCTGACCGACGCACAAC 61.842 55.000 0.00 0.00 35.60 3.32
3460 3629 2.890474 CGTGCACCTCGGGCATAC 60.890 66.667 12.15 0.00 44.11 2.39
3488 3657 3.740513 GCATGCGGCATCAGATGA 58.259 55.556 13.53 0.00 43.97 2.92
3491 3660 4.083812 CTGAAAAGCATGCGGCATCAGA 62.084 50.000 27.18 7.45 45.27 3.27
3504 3673 4.261363 GGAGCTTATACCATGCTGAAAAGC 60.261 45.833 8.92 8.92 37.75 3.51
3505 3674 5.128919 AGGAGCTTATACCATGCTGAAAAG 58.871 41.667 0.00 0.00 37.75 2.27
3506 3675 5.116084 AGGAGCTTATACCATGCTGAAAA 57.884 39.130 0.00 0.00 37.75 2.29
3507 3676 4.778213 AGGAGCTTATACCATGCTGAAA 57.222 40.909 0.00 0.00 37.75 2.69
3508 3677 4.410228 AGAAGGAGCTTATACCATGCTGAA 59.590 41.667 0.00 0.00 37.75 3.02
3509 3678 3.969976 AGAAGGAGCTTATACCATGCTGA 59.030 43.478 0.00 0.00 37.75 4.26
3510 3679 4.348863 AGAAGGAGCTTATACCATGCTG 57.651 45.455 0.00 0.00 37.75 4.41
3511 3680 4.410228 TGAAGAAGGAGCTTATACCATGCT 59.590 41.667 0.00 0.00 40.20 3.79
3512 3681 4.708177 TGAAGAAGGAGCTTATACCATGC 58.292 43.478 0.00 0.00 0.00 4.06
3513 3682 6.649973 CAGATGAAGAAGGAGCTTATACCATG 59.350 42.308 0.00 0.00 0.00 3.66
3514 3683 6.556495 TCAGATGAAGAAGGAGCTTATACCAT 59.444 38.462 0.00 0.00 0.00 3.55
3515 3684 5.899547 TCAGATGAAGAAGGAGCTTATACCA 59.100 40.000 0.00 0.00 0.00 3.25
3516 3685 6.412362 TCAGATGAAGAAGGAGCTTATACC 57.588 41.667 0.00 0.00 0.00 2.73
3517 3686 6.368516 GCATCAGATGAAGAAGGAGCTTATAC 59.631 42.308 15.12 0.00 0.00 1.47
3518 3687 6.462500 GCATCAGATGAAGAAGGAGCTTATA 58.538 40.000 15.12 0.00 0.00 0.98
3519 3688 5.307204 GCATCAGATGAAGAAGGAGCTTAT 58.693 41.667 15.12 0.00 0.00 1.73
3520 3689 4.444022 GGCATCAGATGAAGAAGGAGCTTA 60.444 45.833 15.12 0.00 0.00 3.09
3521 3690 3.543665 GCATCAGATGAAGAAGGAGCTT 58.456 45.455 15.12 0.00 0.00 3.74
3522 3691 2.158784 GGCATCAGATGAAGAAGGAGCT 60.159 50.000 15.12 0.00 0.00 4.09
3523 3692 2.220313 GGCATCAGATGAAGAAGGAGC 58.780 52.381 15.12 0.00 0.00 4.70
3524 3693 2.481854 CGGCATCAGATGAAGAAGGAG 58.518 52.381 15.12 0.00 0.00 3.69
3525 3694 1.473965 GCGGCATCAGATGAAGAAGGA 60.474 52.381 15.12 0.00 0.00 3.36
3526 3695 0.942962 GCGGCATCAGATGAAGAAGG 59.057 55.000 15.12 0.00 0.00 3.46
3527 3696 1.660167 TGCGGCATCAGATGAAGAAG 58.340 50.000 15.12 1.22 0.00 2.85
3549 3718 4.883585 TGGAGCTTATACCATGCTGAAAAG 59.116 41.667 0.00 0.00 37.75 2.27
3563 3732 1.079127 ACGCAGCGTTGGAGCTTAT 60.079 52.632 16.61 0.00 46.80 1.73
3564 3733 2.342279 ACGCAGCGTTGGAGCTTA 59.658 55.556 16.61 0.00 46.80 3.09
3575 3744 0.385223 CACAAGAAGCAGAACGCAGC 60.385 55.000 0.00 0.00 46.13 5.25
3693 3862 3.822735 AGCATGTACAGAAACACAGCAAT 59.177 39.130 0.33 0.00 36.64 3.56
3704 3873 3.684305 CCAATTTGACGAGCATGTACAGA 59.316 43.478 0.33 0.00 0.00 3.41
3737 3906 3.822735 AGCATGTACAGAAACACAGCAAT 59.177 39.130 0.33 0.00 36.64 3.56
3746 3915 2.177394 TTGGCGAGCATGTACAGAAA 57.823 45.000 0.33 0.00 0.00 2.52
3780 3949 3.976942 GCATGTACAGAAACACAGCAAAG 59.023 43.478 0.33 0.00 35.16 2.77
3790 3959 2.177394 TTGGCGAGCATGTACAGAAA 57.823 45.000 0.33 0.00 0.00 2.52
3808 3977 7.064490 CAGAACAAGTTTGTAACAAGCCAATTT 59.936 33.333 0.00 0.00 41.31 1.82
3813 3982 3.796717 GCAGAACAAGTTTGTAACAAGCC 59.203 43.478 0.00 0.00 41.31 4.35
3817 3986 4.216472 TGTGTGCAGAACAAGTTTGTAACA 59.784 37.500 0.00 0.00 41.57 2.41
3848 4017 9.612620 GTTCTTTGTTGATTTACAGTAATCAGG 57.387 33.333 0.00 0.00 43.33 3.86
3984 4156 8.785946 CAAGAATGCCAAAAGAAATGGTAAAAT 58.214 29.630 0.00 0.00 40.23 1.82
4060 4233 6.368791 CGGAGTGAGTCATTTATTTTGAGACA 59.631 38.462 0.00 0.00 0.00 3.41
4085 4258 2.973155 CGAGTCGCTTATTTTCGGAC 57.027 50.000 0.00 0.00 0.00 4.79
4119 4292 3.487120 AGGGATATTTTGTACCCGCTC 57.513 47.619 0.00 0.00 46.13 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.