Multiple sequence alignment - TraesCS2A01G419700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G419700 chr2A 100.000 3526 0 0 1 3526 675707342 675710867 0.000000e+00 6512.0
1 TraesCS2A01G419700 chr2A 79.360 1032 171 27 1062 2062 675839952 675840972 0.000000e+00 688.0
2 TraesCS2A01G419700 chr2A 83.926 591 90 4 1714 2301 675834518 675835106 8.550000e-156 560.0
3 TraesCS2A01G419700 chr2A 94.981 259 13 0 409 667 382855585 382855327 1.180000e-109 407.0
4 TraesCS2A01G419700 chr2A 84.659 176 12 3 783 943 675819050 675819225 1.010000e-35 161.0
5 TraesCS2A01G419700 chr2A 94.000 50 3 0 732 781 728086017 728085968 3.770000e-10 76.8
6 TraesCS2A01G419700 chr2D 96.538 2744 91 3 783 3526 531235006 531237745 0.000000e+00 4538.0
7 TraesCS2A01G419700 chr2D 90.380 894 81 4 2633 3523 85294179 85295070 0.000000e+00 1170.0
8 TraesCS2A01G419700 chr2D 78.150 1254 217 38 1021 2240 529693926 529695156 0.000000e+00 745.0
9 TraesCS2A01G419700 chr2D 76.330 1259 239 45 1061 2300 459322002 459323220 1.390000e-173 619.0
10 TraesCS2A01G419700 chr2D 89.176 425 26 8 1 410 531234601 531235020 2.430000e-141 512.0
11 TraesCS2A01G419700 chr2D 82.064 591 87 14 1062 1640 531322957 531323540 1.470000e-133 486.0
12 TraesCS2A01G419700 chr2D 82.738 168 15 8 251 408 531255818 531255981 1.710000e-28 137.0
13 TraesCS2A01G419700 chr2D 84.553 123 16 3 139 258 315869153 315869275 6.180000e-23 119.0
14 TraesCS2A01G419700 chr2D 92.208 77 3 1 661 734 619666338 619666414 4.810000e-19 106.0
15 TraesCS2A01G419700 chr2B 95.490 1419 62 2 908 2325 630882719 630884136 0.000000e+00 2265.0
16 TraesCS2A01G419700 chr2B 78.370 1239 223 30 1062 2266 631140353 631141580 0.000000e+00 761.0
17 TraesCS2A01G419700 chr2B 78.585 1088 194 31 1132 2195 629866260 629867332 0.000000e+00 682.0
18 TraesCS2A01G419700 chr2B 95.753 259 11 0 409 667 325637866 325638124 5.440000e-113 418.0
19 TraesCS2A01G419700 chr2B 91.129 124 11 0 1 124 630881912 630882035 6.050000e-38 169.0
20 TraesCS2A01G419700 chr2B 83.708 178 12 4 783 943 631133182 631133359 6.100000e-33 152.0
21 TraesCS2A01G419700 chr2B 94.382 89 5 0 783 871 630882629 630882717 1.710000e-28 137.0
22 TraesCS2A01G419700 chr2B 93.333 75 5 0 661 735 738679251 738679177 1.030000e-20 111.0
23 TraesCS2A01G419700 chr2B 91.667 72 4 1 664 735 619681412 619681481 8.060000e-17 99.0
24 TraesCS2A01G419700 chr2B 97.917 48 1 0 732 779 325638120 325638167 2.260000e-12 84.2
25 TraesCS2A01G419700 chr2B 97.872 47 1 0 732 778 484106242 484106288 8.110000e-12 82.4
26 TraesCS2A01G419700 chr2B 100.000 42 0 0 283 324 630882057 630882098 1.050000e-10 78.7
27 TraesCS2A01G419700 chr2B 100.000 30 0 0 245 274 630882033 630882062 4.920000e-04 56.5
28 TraesCS2A01G419700 chr3D 90.909 891 81 0 2633 3523 416180772 416179882 0.000000e+00 1197.0
29 TraesCS2A01G419700 chr3D 90.348 891 86 0 2633 3523 378587867 378588757 0.000000e+00 1170.0
30 TraesCS2A01G419700 chr3D 90.258 893 86 1 2632 3523 361350257 361349365 0.000000e+00 1166.0
31 TraesCS2A01G419700 chr3D 95.000 260 13 0 408 667 90830124 90830383 3.280000e-110 409.0
32 TraesCS2A01G419700 chr7D 90.685 891 82 1 2633 3523 277543882 277542993 0.000000e+00 1184.0
33 TraesCS2A01G419700 chr7D 90.380 894 84 1 2630 3523 143635353 143636244 0.000000e+00 1173.0
34 TraesCS2A01G419700 chr7D 95.385 260 12 0 408 667 219849212 219848953 7.040000e-112 414.0
35 TraesCS2A01G419700 chr5D 90.503 895 83 2 2628 3522 281684720 281685612 0.000000e+00 1181.0
36 TraesCS2A01G419700 chr5D 84.112 107 14 3 2489 2595 497178039 497177936 2.240000e-17 100.0
37 TraesCS2A01G419700 chr4D 90.380 894 84 2 2631 3523 403304465 403305357 0.000000e+00 1173.0
38 TraesCS2A01G419700 chr4D 84.733 131 18 2 120 248 289342959 289342829 2.860000e-26 130.0
39 TraesCS2A01G419700 chrUn 79.031 1259 203 41 1027 2249 357782192 357780959 0.000000e+00 806.0
40 TraesCS2A01G419700 chr1D 95.367 259 12 0 409 667 176361209 176361467 2.530000e-111 412.0
41 TraesCS2A01G419700 chr1D 91.781 73 5 1 664 736 492364852 492364781 2.240000e-17 100.0
42 TraesCS2A01G419700 chr6D 94.981 259 13 0 409 667 452070989 452070731 1.180000e-109 407.0
43 TraesCS2A01G419700 chr6D 94.981 259 13 0 409 667 462398687 462398429 1.180000e-109 407.0
44 TraesCS2A01G419700 chr6D 90.909 77 5 2 663 738 460872461 460872536 6.230000e-18 102.0
45 TraesCS2A01G419700 chr4B 94.981 259 13 0 409 667 364052801 364052543 1.180000e-109 407.0
46 TraesCS2A01G419700 chr4B 81.690 142 19 7 111 248 363315789 363315927 1.030000e-20 111.0
47 TraesCS2A01G419700 chr4B 95.652 46 2 0 732 777 364052547 364052502 1.360000e-09 75.0
48 TraesCS2A01G419700 chr1A 94.595 259 14 0 409 667 499753174 499753432 5.480000e-108 401.0
49 TraesCS2A01G419700 chr1A 84.746 118 16 2 137 252 560478307 560478190 2.220000e-22 117.0
50 TraesCS2A01G419700 chr1A 97.872 47 1 0 732 778 499753428 499753474 8.110000e-12 82.4
51 TraesCS2A01G419700 chr3A 84.553 123 16 3 139 258 513883640 513883518 6.180000e-23 119.0
52 TraesCS2A01G419700 chr6A 82.353 136 20 4 115 247 381084353 381084219 8.000000e-22 115.0
53 TraesCS2A01G419700 chr6A 97.872 47 1 0 732 778 358961573 358961527 8.110000e-12 82.4
54 TraesCS2A01G419700 chr5A 82.353 136 20 4 119 251 483490462 483490328 8.000000e-22 115.0
55 TraesCS2A01G419700 chr5A 82.836 134 18 5 122 251 559091985 559092117 8.000000e-22 115.0
56 TraesCS2A01G419700 chr5A 95.918 49 2 0 732 780 426749524 426749572 2.920000e-11 80.5
57 TraesCS2A01G419700 chr7A 93.151 73 4 1 664 735 28155549 28155621 4.810000e-19 106.0
58 TraesCS2A01G419700 chr7A 97.917 48 1 0 732 779 10205549 10205502 2.260000e-12 84.2
59 TraesCS2A01G419700 chr5B 89.535 86 6 2 651 736 693990319 693990401 4.810000e-19 106.0
60 TraesCS2A01G419700 chr7B 91.549 71 6 0 664 734 363238134 363238064 8.060000e-17 99.0
61 TraesCS2A01G419700 chr3B 88.889 81 5 2 661 737 349269364 349269444 2.900000e-16 97.1
62 TraesCS2A01G419700 chr3B 98.000 50 1 0 732 781 781489875 781489924 1.740000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G419700 chr2A 675707342 675710867 3525 False 6512.00 6512 100.0000 1 3526 1 chr2A.!!$F1 3525
1 TraesCS2A01G419700 chr2A 675839952 675840972 1020 False 688.00 688 79.3600 1062 2062 1 chr2A.!!$F4 1000
2 TraesCS2A01G419700 chr2A 675834518 675835106 588 False 560.00 560 83.9260 1714 2301 1 chr2A.!!$F3 587
3 TraesCS2A01G419700 chr2D 531234601 531237745 3144 False 2525.00 4538 92.8570 1 3526 2 chr2D.!!$F8 3525
4 TraesCS2A01G419700 chr2D 85294179 85295070 891 False 1170.00 1170 90.3800 2633 3523 1 chr2D.!!$F1 890
5 TraesCS2A01G419700 chr2D 529693926 529695156 1230 False 745.00 745 78.1500 1021 2240 1 chr2D.!!$F4 1219
6 TraesCS2A01G419700 chr2D 459322002 459323220 1218 False 619.00 619 76.3300 1061 2300 1 chr2D.!!$F3 1239
7 TraesCS2A01G419700 chr2D 531322957 531323540 583 False 486.00 486 82.0640 1062 1640 1 chr2D.!!$F6 578
8 TraesCS2A01G419700 chr2B 631140353 631141580 1227 False 761.00 761 78.3700 1062 2266 1 chr2B.!!$F5 1204
9 TraesCS2A01G419700 chr2B 629866260 629867332 1072 False 682.00 682 78.5850 1132 2195 1 chr2B.!!$F3 1063
10 TraesCS2A01G419700 chr2B 630881912 630884136 2224 False 541.24 2265 96.2002 1 2325 5 chr2B.!!$F7 2324
11 TraesCS2A01G419700 chr3D 416179882 416180772 890 True 1197.00 1197 90.9090 2633 3523 1 chr3D.!!$R2 890
12 TraesCS2A01G419700 chr3D 378587867 378588757 890 False 1170.00 1170 90.3480 2633 3523 1 chr3D.!!$F2 890
13 TraesCS2A01G419700 chr3D 361349365 361350257 892 True 1166.00 1166 90.2580 2632 3523 1 chr3D.!!$R1 891
14 TraesCS2A01G419700 chr7D 277542993 277543882 889 True 1184.00 1184 90.6850 2633 3523 1 chr7D.!!$R2 890
15 TraesCS2A01G419700 chr7D 143635353 143636244 891 False 1173.00 1173 90.3800 2630 3523 1 chr7D.!!$F1 893
16 TraesCS2A01G419700 chr5D 281684720 281685612 892 False 1181.00 1181 90.5030 2628 3522 1 chr5D.!!$F1 894
17 TraesCS2A01G419700 chr4D 403304465 403305357 892 False 1173.00 1173 90.3800 2631 3523 1 chr4D.!!$F1 892
18 TraesCS2A01G419700 chrUn 357780959 357782192 1233 True 806.00 806 79.0310 1027 2249 1 chrUn.!!$R1 1222

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
470 936 0.109226 GAAGAACGGAGGACAGTCGG 60.109 60.0 0.00 0.0 0.00 4.79 F
500 966 0.179174 GGCGGCAATTTTCGACGATT 60.179 50.0 3.07 0.0 0.00 3.34 F
1576 2064 0.309922 CCTTGCAGCCATCGCTTATG 59.690 55.0 0.00 0.0 45.55 1.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1801 2289 0.270699 TGGGCCTCATATACCTGGGT 59.729 55.000 4.53 0.00 0.00 4.51 R
1825 2331 2.161486 GCTTGCCGTGTAGCTCGAG 61.161 63.158 8.45 8.45 34.57 4.04 R
2987 3503 0.544697 GGTTCGGGCCCTCTTAATGA 59.455 55.000 22.43 4.41 0.00 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.674581 TGGCTCCTCACGCATTTCAG 60.675 55.000 0.00 0.00 0.00 3.02
63 64 2.166664 AGACCTCTGTATCCGTTCTTGC 59.833 50.000 0.00 0.00 0.00 4.01
96 97 5.418840 GTGTGGATAATCCTGTTTTGGACAT 59.581 40.000 0.00 0.00 39.17 3.06
125 126 6.748658 TGACAGACGGAAACTTATTATGTACG 59.251 38.462 0.00 0.00 0.00 3.67
134 135 8.724229 GGAAACTTATTATGTACGTCCTTTGTT 58.276 33.333 0.00 0.00 0.00 2.83
143 144 9.804758 TTATGTACGTCCTTTGTTTCAAAAATT 57.195 25.926 0.00 0.00 0.00 1.82
327 789 3.806949 ATGTTGAACTTTAGGCCCTCA 57.193 42.857 0.00 0.00 0.00 3.86
371 833 2.704108 GGGATGACGCGAGACTCTA 58.296 57.895 15.93 0.00 0.00 2.43
392 858 3.121030 CGTGCGGCTTCCTTCCAG 61.121 66.667 0.00 0.00 0.00 3.86
393 859 3.435186 GTGCGGCTTCCTTCCAGC 61.435 66.667 0.00 0.00 36.45 4.85
394 860 3.952508 TGCGGCTTCCTTCCAGCA 61.953 61.111 0.00 0.00 39.21 4.41
395 861 2.672996 GCGGCTTCCTTCCAGCAA 60.673 61.111 0.00 0.00 39.21 3.91
396 862 2.268076 GCGGCTTCCTTCCAGCAAA 61.268 57.895 0.00 0.00 39.21 3.68
397 863 1.878775 CGGCTTCCTTCCAGCAAAG 59.121 57.895 0.00 0.00 39.21 2.77
398 864 0.890996 CGGCTTCCTTCCAGCAAAGT 60.891 55.000 0.00 0.00 39.21 2.66
399 865 0.884514 GGCTTCCTTCCAGCAAAGTC 59.115 55.000 0.00 0.00 39.21 3.01
400 866 1.546548 GGCTTCCTTCCAGCAAAGTCT 60.547 52.381 0.00 0.00 39.21 3.24
401 867 1.809547 GCTTCCTTCCAGCAAAGTCTC 59.190 52.381 0.00 0.00 37.22 3.36
402 868 2.431454 CTTCCTTCCAGCAAAGTCTCC 58.569 52.381 0.00 0.00 0.00 3.71
403 869 0.321671 TCCTTCCAGCAAAGTCTCCG 59.678 55.000 0.00 0.00 0.00 4.63
404 870 1.301677 CCTTCCAGCAAAGTCTCCGC 61.302 60.000 0.00 0.00 0.00 5.54
405 871 0.603707 CTTCCAGCAAAGTCTCCGCA 60.604 55.000 0.00 0.00 0.00 5.69
406 872 0.603707 TTCCAGCAAAGTCTCCGCAG 60.604 55.000 0.00 0.00 0.00 5.18
407 873 1.302033 CCAGCAAAGTCTCCGCAGT 60.302 57.895 0.00 0.00 0.00 4.40
408 874 1.572085 CCAGCAAAGTCTCCGCAGTG 61.572 60.000 0.00 0.00 0.00 3.66
409 875 1.963338 AGCAAAGTCTCCGCAGTGC 60.963 57.895 4.58 4.58 0.00 4.40
410 876 2.970974 GCAAAGTCTCCGCAGTGCC 61.971 63.158 10.11 0.00 0.00 5.01
411 877 1.302033 CAAAGTCTCCGCAGTGCCT 60.302 57.895 10.11 0.00 0.00 4.75
412 878 0.886490 CAAAGTCTCCGCAGTGCCTT 60.886 55.000 10.11 3.52 0.00 4.35
413 879 0.685097 AAAGTCTCCGCAGTGCCTTA 59.315 50.000 10.11 0.00 0.00 2.69
414 880 0.905357 AAGTCTCCGCAGTGCCTTAT 59.095 50.000 10.11 0.00 0.00 1.73
415 881 0.905357 AGTCTCCGCAGTGCCTTATT 59.095 50.000 10.11 0.00 0.00 1.40
416 882 2.108168 AGTCTCCGCAGTGCCTTATTA 58.892 47.619 10.11 0.00 0.00 0.98
417 883 2.700897 AGTCTCCGCAGTGCCTTATTAT 59.299 45.455 10.11 0.00 0.00 1.28
418 884 3.134804 AGTCTCCGCAGTGCCTTATTATT 59.865 43.478 10.11 0.00 0.00 1.40
419 885 4.344102 AGTCTCCGCAGTGCCTTATTATTA 59.656 41.667 10.11 0.00 0.00 0.98
420 886 5.054477 GTCTCCGCAGTGCCTTATTATTAA 58.946 41.667 10.11 0.00 0.00 1.40
421 887 5.050295 GTCTCCGCAGTGCCTTATTATTAAC 60.050 44.000 10.11 0.00 0.00 2.01
422 888 5.031066 TCCGCAGTGCCTTATTATTAACT 57.969 39.130 10.11 0.00 0.00 2.24
423 889 5.054477 TCCGCAGTGCCTTATTATTAACTC 58.946 41.667 10.11 0.00 0.00 3.01
424 890 4.084537 CCGCAGTGCCTTATTATTAACTCG 60.085 45.833 10.11 0.00 0.00 4.18
425 891 4.084537 CGCAGTGCCTTATTATTAACTCGG 60.085 45.833 10.11 0.00 0.00 4.63
426 892 5.054477 GCAGTGCCTTATTATTAACTCGGA 58.946 41.667 2.85 0.00 0.00 4.55
427 893 5.050295 GCAGTGCCTTATTATTAACTCGGAC 60.050 44.000 2.85 0.00 0.00 4.79
428 894 6.046593 CAGTGCCTTATTATTAACTCGGACA 58.953 40.000 0.00 0.00 0.00 4.02
429 895 6.537301 CAGTGCCTTATTATTAACTCGGACAA 59.463 38.462 0.00 0.00 0.00 3.18
430 896 6.537660 AGTGCCTTATTATTAACTCGGACAAC 59.462 38.462 0.00 0.00 0.00 3.32
431 897 5.818857 TGCCTTATTATTAACTCGGACAACC 59.181 40.000 0.00 0.00 0.00 3.77
432 898 6.053650 GCCTTATTATTAACTCGGACAACCT 58.946 40.000 0.00 0.00 0.00 3.50
433 899 6.018180 GCCTTATTATTAACTCGGACAACCTG 60.018 42.308 0.00 0.00 0.00 4.00
434 900 7.270047 CCTTATTATTAACTCGGACAACCTGA 58.730 38.462 0.00 0.00 0.00 3.86
435 901 7.767198 CCTTATTATTAACTCGGACAACCTGAA 59.233 37.037 0.00 0.00 0.00 3.02
436 902 8.712285 TTATTATTAACTCGGACAACCTGAAG 57.288 34.615 0.00 0.00 0.00 3.02
437 903 3.396260 TTAACTCGGACAACCTGAAGG 57.604 47.619 0.00 0.00 42.17 3.46
452 918 5.039920 CCTGAAGGTGATTGATACCATGA 57.960 43.478 0.00 0.00 40.74 3.07
453 919 5.439721 CCTGAAGGTGATTGATACCATGAA 58.560 41.667 0.00 0.00 40.74 2.57
454 920 5.530171 CCTGAAGGTGATTGATACCATGAAG 59.470 44.000 0.00 0.00 40.74 3.02
455 921 6.312141 TGAAGGTGATTGATACCATGAAGA 57.688 37.500 0.00 0.00 40.74 2.87
456 922 6.720309 TGAAGGTGATTGATACCATGAAGAA 58.280 36.000 0.00 0.00 40.74 2.52
457 923 6.599244 TGAAGGTGATTGATACCATGAAGAAC 59.401 38.462 0.00 0.00 40.74 3.01
458 924 5.118990 AGGTGATTGATACCATGAAGAACG 58.881 41.667 0.00 0.00 40.74 3.95
459 925 4.273480 GGTGATTGATACCATGAAGAACGG 59.727 45.833 0.00 0.00 38.12 4.44
460 926 5.116180 GTGATTGATACCATGAAGAACGGA 58.884 41.667 0.00 0.00 0.00 4.69
461 927 5.235186 GTGATTGATACCATGAAGAACGGAG 59.765 44.000 0.00 0.00 0.00 4.63
462 928 3.819564 TGATACCATGAAGAACGGAGG 57.180 47.619 0.00 0.00 0.00 4.30
463 929 3.371034 TGATACCATGAAGAACGGAGGA 58.629 45.455 0.00 0.00 0.00 3.71
464 930 3.132289 TGATACCATGAAGAACGGAGGAC 59.868 47.826 0.00 0.00 0.00 3.85
465 931 1.348064 ACCATGAAGAACGGAGGACA 58.652 50.000 0.00 0.00 0.00 4.02
466 932 1.276421 ACCATGAAGAACGGAGGACAG 59.724 52.381 0.00 0.00 0.00 3.51
467 933 1.276421 CCATGAAGAACGGAGGACAGT 59.724 52.381 0.00 0.00 0.00 3.55
468 934 2.611518 CATGAAGAACGGAGGACAGTC 58.388 52.381 0.00 0.00 0.00 3.51
469 935 0.596577 TGAAGAACGGAGGACAGTCG 59.403 55.000 0.00 0.00 0.00 4.18
470 936 0.109226 GAAGAACGGAGGACAGTCGG 60.109 60.000 0.00 0.00 0.00 4.79
471 937 2.126031 GAACGGAGGACAGTCGGC 60.126 66.667 0.00 0.00 0.00 5.54
472 938 3.966026 GAACGGAGGACAGTCGGCG 62.966 68.421 0.00 0.00 0.00 6.46
476 942 4.436998 GAGGACAGTCGGCGGGTG 62.437 72.222 7.21 7.51 0.00 4.61
491 957 4.356442 GTGCGGTGGCGGCAATTT 62.356 61.111 15.50 0.00 41.06 1.82
492 958 3.610669 TGCGGTGGCGGCAATTTT 61.611 55.556 15.50 0.00 44.10 1.82
493 959 2.809174 GCGGTGGCGGCAATTTTC 60.809 61.111 15.50 0.00 0.00 2.29
494 960 2.503809 CGGTGGCGGCAATTTTCG 60.504 61.111 15.50 9.28 0.00 3.46
495 961 2.958576 GGTGGCGGCAATTTTCGA 59.041 55.556 15.50 0.00 0.00 3.71
496 962 1.443702 GGTGGCGGCAATTTTCGAC 60.444 57.895 15.50 0.00 34.54 4.20
497 963 1.795962 GTGGCGGCAATTTTCGACG 60.796 57.895 15.50 0.00 37.18 5.12
498 964 1.961791 TGGCGGCAATTTTCGACGA 60.962 52.632 10.22 0.00 37.18 4.20
499 965 1.302383 TGGCGGCAATTTTCGACGAT 61.302 50.000 10.22 0.00 37.18 3.73
500 966 0.179174 GGCGGCAATTTTCGACGATT 60.179 50.000 3.07 0.00 0.00 3.34
501 967 0.907171 GCGGCAATTTTCGACGATTG 59.093 50.000 13.10 13.10 36.56 2.67
502 968 1.727857 GCGGCAATTTTCGACGATTGT 60.728 47.619 16.80 0.00 36.03 2.71
503 969 2.580589 CGGCAATTTTCGACGATTGTT 58.419 42.857 16.80 0.00 36.03 2.83
504 970 2.977169 CGGCAATTTTCGACGATTGTTT 59.023 40.909 16.80 0.00 36.03 2.83
505 971 3.423867 CGGCAATTTTCGACGATTGTTTT 59.576 39.130 16.80 0.00 36.03 2.43
506 972 4.431086 CGGCAATTTTCGACGATTGTTTTC 60.431 41.667 16.80 5.01 36.03 2.29
507 973 4.442733 GGCAATTTTCGACGATTGTTTTCA 59.557 37.500 16.80 0.00 36.03 2.69
508 974 5.118510 GGCAATTTTCGACGATTGTTTTCAT 59.881 36.000 16.80 0.00 36.03 2.57
509 975 6.346518 GGCAATTTTCGACGATTGTTTTCATT 60.347 34.615 16.80 0.00 36.03 2.57
510 976 7.148885 GGCAATTTTCGACGATTGTTTTCATTA 60.149 33.333 16.80 0.00 36.03 1.90
511 977 8.372521 GCAATTTTCGACGATTGTTTTCATTAT 58.627 29.630 16.80 0.00 36.03 1.28
512 978 9.660825 CAATTTTCGACGATTGTTTTCATTATG 57.339 29.630 0.00 0.00 0.00 1.90
513 979 6.846870 TTTCGACGATTGTTTTCATTATGC 57.153 33.333 0.00 0.00 0.00 3.14
514 980 5.794687 TCGACGATTGTTTTCATTATGCT 57.205 34.783 0.00 0.00 0.00 3.79
515 981 6.176975 TCGACGATTGTTTTCATTATGCTT 57.823 33.333 0.00 0.00 0.00 3.91
516 982 6.020984 TCGACGATTGTTTTCATTATGCTTG 58.979 36.000 0.00 0.00 0.00 4.01
517 983 5.794945 CGACGATTGTTTTCATTATGCTTGT 59.205 36.000 0.00 0.00 0.00 3.16
518 984 6.237019 CGACGATTGTTTTCATTATGCTTGTG 60.237 38.462 0.00 0.00 0.00 3.33
519 985 6.676950 ACGATTGTTTTCATTATGCTTGTGA 58.323 32.000 0.00 0.00 0.00 3.58
520 986 6.582295 ACGATTGTTTTCATTATGCTTGTGAC 59.418 34.615 0.00 0.00 0.00 3.67
521 987 6.803320 CGATTGTTTTCATTATGCTTGTGACT 59.197 34.615 0.00 0.00 0.00 3.41
522 988 7.326789 CGATTGTTTTCATTATGCTTGTGACTT 59.673 33.333 0.00 0.00 0.00 3.01
523 989 7.928908 TTGTTTTCATTATGCTTGTGACTTC 57.071 32.000 0.00 0.00 0.00 3.01
524 990 7.036996 TGTTTTCATTATGCTTGTGACTTCA 57.963 32.000 0.00 0.00 0.00 3.02
525 991 7.660112 TGTTTTCATTATGCTTGTGACTTCAT 58.340 30.769 0.00 0.00 0.00 2.57
526 992 8.143193 TGTTTTCATTATGCTTGTGACTTCATT 58.857 29.630 0.00 0.00 0.00 2.57
527 993 8.430063 GTTTTCATTATGCTTGTGACTTCATTG 58.570 33.333 0.00 0.00 0.00 2.82
528 994 5.643664 TCATTATGCTTGTGACTTCATTGC 58.356 37.500 0.00 0.00 0.00 3.56
529 995 5.416639 TCATTATGCTTGTGACTTCATTGCT 59.583 36.000 0.00 0.00 0.00 3.91
530 996 6.598850 TCATTATGCTTGTGACTTCATTGCTA 59.401 34.615 0.00 0.00 0.00 3.49
531 997 4.691860 ATGCTTGTGACTTCATTGCTAC 57.308 40.909 0.00 0.00 0.00 3.58
532 998 3.743521 TGCTTGTGACTTCATTGCTACT 58.256 40.909 0.00 0.00 0.00 2.57
533 999 4.893608 TGCTTGTGACTTCATTGCTACTA 58.106 39.130 0.00 0.00 0.00 1.82
534 1000 4.931601 TGCTTGTGACTTCATTGCTACTAG 59.068 41.667 0.00 0.00 0.00 2.57
535 1001 5.171476 GCTTGTGACTTCATTGCTACTAGA 58.829 41.667 0.00 0.00 0.00 2.43
536 1002 5.814705 GCTTGTGACTTCATTGCTACTAGAT 59.185 40.000 0.00 0.00 0.00 1.98
537 1003 6.314896 GCTTGTGACTTCATTGCTACTAGATT 59.685 38.462 0.00 0.00 0.00 2.40
538 1004 7.465245 GCTTGTGACTTCATTGCTACTAGATTC 60.465 40.741 0.00 0.00 0.00 2.52
539 1005 6.036470 TGTGACTTCATTGCTACTAGATTCG 58.964 40.000 0.00 0.00 0.00 3.34
540 1006 6.127730 TGTGACTTCATTGCTACTAGATTCGA 60.128 38.462 0.00 0.00 0.00 3.71
541 1007 6.752351 GTGACTTCATTGCTACTAGATTCGAA 59.248 38.462 0.00 0.00 0.00 3.71
542 1008 6.752351 TGACTTCATTGCTACTAGATTCGAAC 59.248 38.462 0.00 0.00 0.00 3.95
543 1009 6.631016 ACTTCATTGCTACTAGATTCGAACA 58.369 36.000 0.00 0.00 0.00 3.18
544 1010 7.268586 ACTTCATTGCTACTAGATTCGAACAT 58.731 34.615 0.00 0.00 0.00 2.71
545 1011 7.766278 ACTTCATTGCTACTAGATTCGAACATT 59.234 33.333 0.00 0.00 0.00 2.71
546 1012 7.468922 TCATTGCTACTAGATTCGAACATTG 57.531 36.000 0.00 0.00 0.00 2.82
547 1013 5.718649 TTGCTACTAGATTCGAACATTGC 57.281 39.130 0.00 0.00 0.00 3.56
548 1014 4.754322 TGCTACTAGATTCGAACATTGCA 58.246 39.130 0.00 2.51 0.00 4.08
549 1015 5.175127 TGCTACTAGATTCGAACATTGCAA 58.825 37.500 0.00 0.00 0.00 4.08
550 1016 5.063438 TGCTACTAGATTCGAACATTGCAAC 59.937 40.000 0.00 0.00 0.00 4.17
551 1017 5.063438 GCTACTAGATTCGAACATTGCAACA 59.937 40.000 0.00 0.00 0.00 3.33
552 1018 5.536554 ACTAGATTCGAACATTGCAACAG 57.463 39.130 0.00 0.00 0.00 3.16
553 1019 3.837213 AGATTCGAACATTGCAACAGG 57.163 42.857 0.00 0.00 0.00 4.00
554 1020 2.489329 AGATTCGAACATTGCAACAGGG 59.511 45.455 0.00 0.00 0.00 4.45
555 1021 1.974265 TTCGAACATTGCAACAGGGA 58.026 45.000 0.00 0.00 0.00 4.20
556 1022 1.974265 TCGAACATTGCAACAGGGAA 58.026 45.000 0.00 0.00 0.00 3.97
557 1023 1.879380 TCGAACATTGCAACAGGGAAG 59.121 47.619 0.00 0.00 0.00 3.46
558 1024 1.666888 CGAACATTGCAACAGGGAAGC 60.667 52.381 0.00 0.00 0.00 3.86
559 1025 1.340889 GAACATTGCAACAGGGAAGCA 59.659 47.619 0.00 0.00 36.32 3.91
565 1031 4.679373 TTGCAACAGGGAAGCAAATAAA 57.321 36.364 0.00 0.00 44.39 1.40
566 1032 4.679373 TGCAACAGGGAAGCAAATAAAA 57.321 36.364 0.00 0.00 34.97 1.52
567 1033 5.226194 TGCAACAGGGAAGCAAATAAAAT 57.774 34.783 0.00 0.00 34.97 1.82
568 1034 6.352016 TGCAACAGGGAAGCAAATAAAATA 57.648 33.333 0.00 0.00 34.97 1.40
569 1035 6.397272 TGCAACAGGGAAGCAAATAAAATAG 58.603 36.000 0.00 0.00 34.97 1.73
570 1036 5.291858 GCAACAGGGAAGCAAATAAAATAGC 59.708 40.000 0.00 0.00 0.00 2.97
571 1037 6.633856 CAACAGGGAAGCAAATAAAATAGCT 58.366 36.000 0.00 0.00 39.37 3.32
572 1038 6.456795 ACAGGGAAGCAAATAAAATAGCTC 57.543 37.500 0.00 0.00 36.07 4.09
573 1039 5.951747 ACAGGGAAGCAAATAAAATAGCTCA 59.048 36.000 0.00 0.00 36.07 4.26
574 1040 6.608808 ACAGGGAAGCAAATAAAATAGCTCAT 59.391 34.615 0.00 0.00 36.07 2.90
575 1041 7.779798 ACAGGGAAGCAAATAAAATAGCTCATA 59.220 33.333 0.00 0.00 36.07 2.15
576 1042 8.632679 CAGGGAAGCAAATAAAATAGCTCATAA 58.367 33.333 0.00 0.00 36.07 1.90
577 1043 8.854117 AGGGAAGCAAATAAAATAGCTCATAAG 58.146 33.333 0.00 0.00 36.07 1.73
590 1056 4.188948 GCTCATAAGCTTGCGAGTTTAG 57.811 45.455 21.31 5.63 45.55 1.85
591 1057 3.545031 GCTCATAAGCTTGCGAGTTTAGC 60.545 47.826 21.31 11.11 45.55 3.09
592 1058 3.861840 TCATAAGCTTGCGAGTTTAGCT 58.138 40.909 9.86 0.00 46.63 3.32
593 1059 5.006153 TCATAAGCTTGCGAGTTTAGCTA 57.994 39.130 9.86 0.00 44.05 3.32
594 1060 5.416083 TCATAAGCTTGCGAGTTTAGCTAA 58.584 37.500 9.86 0.86 44.05 3.09
595 1061 5.872617 TCATAAGCTTGCGAGTTTAGCTAAA 59.127 36.000 14.96 14.96 44.05 1.85
596 1062 6.538742 TCATAAGCTTGCGAGTTTAGCTAAAT 59.461 34.615 21.28 10.80 44.05 1.40
597 1063 5.629079 AAGCTTGCGAGTTTAGCTAAATT 57.371 34.783 21.28 17.38 44.05 1.82
598 1064 5.629079 AGCTTGCGAGTTTAGCTAAATTT 57.371 34.783 21.28 13.04 43.08 1.82
599 1065 6.013842 AGCTTGCGAGTTTAGCTAAATTTT 57.986 33.333 21.28 10.69 43.08 1.82
600 1066 6.086871 AGCTTGCGAGTTTAGCTAAATTTTC 58.913 36.000 21.28 16.81 43.08 2.29
601 1067 5.002561 GCTTGCGAGTTTAGCTAAATTTTCG 59.997 40.000 27.95 27.95 33.57 3.46
602 1068 5.600908 TGCGAGTTTAGCTAAATTTTCGT 57.399 34.783 29.91 13.78 33.29 3.85
603 1069 5.992729 TGCGAGTTTAGCTAAATTTTCGTT 58.007 33.333 29.91 13.13 33.29 3.85
604 1070 5.849081 TGCGAGTTTAGCTAAATTTTCGTTG 59.151 36.000 29.91 16.56 33.29 4.10
605 1071 6.075280 GCGAGTTTAGCTAAATTTTCGTTGA 58.925 36.000 29.91 7.50 33.29 3.18
606 1072 6.741358 GCGAGTTTAGCTAAATTTTCGTTGAT 59.259 34.615 29.91 10.69 33.29 2.57
607 1073 7.270579 GCGAGTTTAGCTAAATTTTCGTTGATT 59.729 33.333 29.91 7.16 33.29 2.57
608 1074 9.113876 CGAGTTTAGCTAAATTTTCGTTGATTT 57.886 29.630 25.99 2.95 0.00 2.17
615 1081 9.132521 AGCTAAATTTTCGTTGATTTCTGATTG 57.867 29.630 0.00 0.00 0.00 2.67
616 1082 9.128107 GCTAAATTTTCGTTGATTTCTGATTGA 57.872 29.630 0.00 0.00 0.00 2.57
621 1087 9.695526 ATTTTCGTTGATTTCTGATTGATTTGA 57.304 25.926 0.00 0.00 0.00 2.69
622 1088 8.732413 TTTCGTTGATTTCTGATTGATTTGAG 57.268 30.769 0.00 0.00 0.00 3.02
623 1089 6.845302 TCGTTGATTTCTGATTGATTTGAGG 58.155 36.000 0.00 0.00 0.00 3.86
624 1090 6.654582 TCGTTGATTTCTGATTGATTTGAGGA 59.345 34.615 0.00 0.00 0.00 3.71
625 1091 7.174772 TCGTTGATTTCTGATTGATTTGAGGAA 59.825 33.333 0.00 0.00 0.00 3.36
626 1092 7.272084 CGTTGATTTCTGATTGATTTGAGGAAC 59.728 37.037 0.00 0.00 0.00 3.62
627 1093 7.161773 TGATTTCTGATTGATTTGAGGAACC 57.838 36.000 0.00 0.00 0.00 3.62
628 1094 6.950041 TGATTTCTGATTGATTTGAGGAACCT 59.050 34.615 0.00 0.00 0.00 3.50
629 1095 6.579666 TTTCTGATTGATTTGAGGAACCTG 57.420 37.500 0.00 0.00 0.00 4.00
630 1096 5.246981 TCTGATTGATTTGAGGAACCTGT 57.753 39.130 0.00 0.00 0.00 4.00
631 1097 6.373005 TCTGATTGATTTGAGGAACCTGTA 57.627 37.500 0.00 0.00 0.00 2.74
632 1098 6.778821 TCTGATTGATTTGAGGAACCTGTAA 58.221 36.000 0.00 0.00 0.00 2.41
633 1099 7.230747 TCTGATTGATTTGAGGAACCTGTAAA 58.769 34.615 0.00 0.66 0.00 2.01
634 1100 7.890127 TCTGATTGATTTGAGGAACCTGTAAAT 59.110 33.333 0.00 5.40 0.00 1.40
635 1101 7.829725 TGATTGATTTGAGGAACCTGTAAATG 58.170 34.615 13.61 0.00 0.00 2.32
636 1102 7.669304 TGATTGATTTGAGGAACCTGTAAATGA 59.331 33.333 13.61 6.41 0.00 2.57
637 1103 7.831691 TTGATTTGAGGAACCTGTAAATGAA 57.168 32.000 13.61 10.43 0.00 2.57
638 1104 7.831691 TGATTTGAGGAACCTGTAAATGAAA 57.168 32.000 13.61 0.00 0.00 2.69
639 1105 8.421249 TGATTTGAGGAACCTGTAAATGAAAT 57.579 30.769 13.61 0.00 0.00 2.17
640 1106 8.869109 TGATTTGAGGAACCTGTAAATGAAATT 58.131 29.630 13.61 0.00 38.98 1.82
641 1107 9.143631 GATTTGAGGAACCTGTAAATGAAATTG 57.856 33.333 13.61 0.00 36.10 2.32
642 1108 7.595819 TTGAGGAACCTGTAAATGAAATTGT 57.404 32.000 0.00 0.00 36.10 2.71
643 1109 8.698973 TTGAGGAACCTGTAAATGAAATTGTA 57.301 30.769 0.00 0.00 36.10 2.41
644 1110 8.698973 TGAGGAACCTGTAAATGAAATTGTAA 57.301 30.769 0.00 0.00 36.10 2.41
645 1111 9.308000 TGAGGAACCTGTAAATGAAATTGTAAT 57.692 29.630 0.00 0.00 36.10 1.89
646 1112 9.573133 GAGGAACCTGTAAATGAAATTGTAATG 57.427 33.333 0.00 0.00 36.10 1.90
647 1113 9.308000 AGGAACCTGTAAATGAAATTGTAATGA 57.692 29.630 0.00 0.00 36.10 2.57
648 1114 9.353999 GGAACCTGTAAATGAAATTGTAATGAC 57.646 33.333 0.00 0.00 36.10 3.06
649 1115 9.353999 GAACCTGTAAATGAAATTGTAATGACC 57.646 33.333 0.00 0.00 36.10 4.02
650 1116 7.836842 ACCTGTAAATGAAATTGTAATGACCC 58.163 34.615 0.00 0.00 36.10 4.46
651 1117 7.673926 ACCTGTAAATGAAATTGTAATGACCCT 59.326 33.333 0.00 0.00 36.10 4.34
652 1118 8.190784 CCTGTAAATGAAATTGTAATGACCCTC 58.809 37.037 0.00 0.00 36.10 4.30
653 1119 8.642935 TGTAAATGAAATTGTAATGACCCTCA 57.357 30.769 0.00 0.00 36.10 3.86
654 1120 8.519526 TGTAAATGAAATTGTAATGACCCTCAC 58.480 33.333 0.00 0.00 36.10 3.51
655 1121 7.537596 AAATGAAATTGTAATGACCCTCACA 57.462 32.000 0.00 0.00 36.10 3.58
656 1122 7.537596 AATGAAATTGTAATGACCCTCACAA 57.462 32.000 0.00 0.00 33.44 3.33
657 1123 6.968263 TGAAATTGTAATGACCCTCACAAA 57.032 33.333 0.00 0.00 34.79 2.83
658 1124 7.537596 TGAAATTGTAATGACCCTCACAAAT 57.462 32.000 0.00 0.00 34.79 2.32
659 1125 7.377398 TGAAATTGTAATGACCCTCACAAATG 58.623 34.615 0.00 0.00 34.79 2.32
660 1126 7.232330 TGAAATTGTAATGACCCTCACAAATGA 59.768 33.333 0.00 0.00 34.79 2.57
661 1127 7.722949 AATTGTAATGACCCTCACAAATGAT 57.277 32.000 0.00 0.00 34.79 2.45
662 1128 6.513806 TTGTAATGACCCTCACAAATGATG 57.486 37.500 0.00 0.00 33.22 3.07
663 1129 5.569355 TGTAATGACCCTCACAAATGATGT 58.431 37.500 0.00 0.00 45.34 3.06
664 1130 6.716284 TGTAATGACCCTCACAAATGATGTA 58.284 36.000 0.00 0.00 41.46 2.29
665 1131 6.597672 TGTAATGACCCTCACAAATGATGTAC 59.402 38.462 0.00 0.00 41.46 2.90
666 1132 4.908601 TGACCCTCACAAATGATGTACT 57.091 40.909 0.00 0.00 41.46 2.73
667 1133 4.832248 TGACCCTCACAAATGATGTACTC 58.168 43.478 0.00 0.00 41.46 2.59
668 1134 4.192317 GACCCTCACAAATGATGTACTCC 58.808 47.826 0.00 0.00 41.46 3.85
669 1135 3.587061 ACCCTCACAAATGATGTACTCCA 59.413 43.478 0.00 0.00 41.46 3.86
670 1136 4.228210 ACCCTCACAAATGATGTACTCCAT 59.772 41.667 0.00 0.00 41.46 3.41
690 1156 8.305317 ACTCCATCCGTAAACTAATATAAGAGC 58.695 37.037 0.00 0.00 0.00 4.09
691 1157 7.310664 TCCATCCGTAAACTAATATAAGAGCG 58.689 38.462 0.00 0.00 0.00 5.03
692 1158 7.040201 TCCATCCGTAAACTAATATAAGAGCGT 60.040 37.037 0.00 0.00 0.00 5.07
693 1159 7.597743 CCATCCGTAAACTAATATAAGAGCGTT 59.402 37.037 0.00 0.00 0.00 4.84
694 1160 8.975439 CATCCGTAAACTAATATAAGAGCGTTT 58.025 33.333 0.00 0.00 0.00 3.60
696 1162 9.669353 TCCGTAAACTAATATAAGAGCGTTTAG 57.331 33.333 0.00 0.00 30.36 1.85
697 1163 9.669353 CCGTAAACTAATATAAGAGCGTTTAGA 57.331 33.333 0.00 0.00 30.36 2.10
707 1173 5.945775 AAGAGCGTTTAGATTACTAACGC 57.054 39.130 20.02 20.02 46.25 4.84
711 1177 5.945775 GCGTTTAGATTACTAACGCTCTT 57.054 39.130 20.25 0.00 44.73 2.85
713 1179 7.620397 GCGTTTAGATTACTAACGCTCTTAT 57.380 36.000 20.25 0.00 44.73 1.73
714 1180 8.719478 GCGTTTAGATTACTAACGCTCTTATA 57.281 34.615 20.25 0.00 44.73 0.98
715 1181 9.339492 GCGTTTAGATTACTAACGCTCTTATAT 57.661 33.333 20.25 0.00 44.73 0.86
729 1195 9.953697 AACGCTCTTATATTAGTTTACAGAGAG 57.046 33.333 0.00 0.00 34.15 3.20
730 1196 9.339850 ACGCTCTTATATTAGTTTACAGAGAGA 57.660 33.333 4.35 0.00 32.80 3.10
731 1197 9.820229 CGCTCTTATATTAGTTTACAGAGAGAG 57.180 37.037 0.00 0.00 30.76 3.20
739 1205 7.762588 TTAGTTTACAGAGAGAGTACTTGCT 57.237 36.000 0.00 0.00 0.00 3.91
740 1206 8.859236 TTAGTTTACAGAGAGAGTACTTGCTA 57.141 34.615 0.00 0.00 0.00 3.49
741 1207 7.948034 AGTTTACAGAGAGAGTACTTGCTAT 57.052 36.000 0.00 0.00 0.00 2.97
742 1208 7.992008 AGTTTACAGAGAGAGTACTTGCTATC 58.008 38.462 0.00 0.00 0.00 2.08
743 1209 7.832187 AGTTTACAGAGAGAGTACTTGCTATCT 59.168 37.037 0.00 0.00 39.46 1.98
750 1216 8.615878 GAGAGAGTACTTGCTATCTCTAATGA 57.384 38.462 10.64 0.00 46.49 2.57
751 1217 8.988546 AGAGAGTACTTGCTATCTCTAATGAA 57.011 34.615 7.99 0.00 45.10 2.57
752 1218 9.586732 AGAGAGTACTTGCTATCTCTAATGAAT 57.413 33.333 7.99 0.00 45.10 2.57
836 1302 0.809241 CTCTCCTGACATGCTTCGGC 60.809 60.000 0.00 0.00 42.19 5.54
899 1365 1.242076 CCTGGTTTGCCTTCTCTGTG 58.758 55.000 0.00 0.00 35.27 3.66
1050 1516 2.056815 TGCCACTTGTGCTTGCCAA 61.057 52.632 0.00 0.00 0.00 4.52
1099 1565 1.444724 CGCGGTATGTCGACAACCA 60.445 57.895 31.17 17.56 32.55 3.67
1457 1936 3.421844 TCGTGAATCTCTTCTCTGGTGA 58.578 45.455 0.00 0.00 32.29 4.02
1576 2064 0.309922 CCTTGCAGCCATCGCTTATG 59.690 55.000 0.00 0.00 45.55 1.90
1603 2091 3.255642 GTCCCACATTGCACTGTGTAAAT 59.744 43.478 28.75 9.68 44.04 1.40
1611 2099 1.808411 CACTGTGTAAATCTGGCCGT 58.192 50.000 0.00 0.00 0.00 5.68
1650 2138 5.829829 ACCGTAAAAACATTAGGCGAAAAA 58.170 33.333 0.00 0.00 0.00 1.94
1728 2216 2.738000 CGAGGAGCTGATCAGGTTCAAG 60.738 54.545 30.12 20.57 39.57 3.02
1801 2289 3.009192 ATCGAAAGGCGCCACGGTA 62.009 57.895 31.54 15.70 40.61 4.02
1825 2331 2.503356 CAGGTATATGAGGCCCATCTCC 59.497 54.545 9.67 10.45 36.71 3.71
1846 2352 1.671054 GAGCTACACGGCAAGCCAA 60.671 57.895 12.19 0.00 39.64 4.52
1949 2458 2.709397 AGGCTTACAAGTACAAGTGGGT 59.291 45.455 0.00 0.00 0.00 4.51
2326 2840 4.811969 ACCCTCGTAATTCATGTGTGTA 57.188 40.909 0.00 0.00 0.00 2.90
2407 2921 2.356135 CCATCCAGTACGTTTCCAAGG 58.644 52.381 0.00 0.00 0.00 3.61
2420 2934 2.734755 TCCAAGGTTGATGCTATGGG 57.265 50.000 0.00 0.00 0.00 4.00
2482 2996 2.478134 GTCCATTCTGACGCATATGCTC 59.522 50.000 24.56 19.60 39.32 4.26
2490 3004 0.528466 ACGCATATGCTCTGTGTCGG 60.528 55.000 24.56 8.79 39.32 4.79
2517 3031 2.178912 TGAAGACGAATGAACCACCC 57.821 50.000 0.00 0.00 0.00 4.61
2526 3040 0.391130 ATGAACCACCCGTGTCATCG 60.391 55.000 0.00 0.00 0.00 3.84
2532 3046 3.024609 CCCGTGTCATCGATCGCG 61.025 66.667 11.09 11.80 37.32 5.87
2584 3098 8.896744 CAACTATTGTGGTGTGAATTCTGATAT 58.103 33.333 7.05 0.00 0.00 1.63
2597 3111 8.580720 GTGAATTCTGATATAGTAAGAGAGGCA 58.419 37.037 7.05 0.00 0.00 4.75
2831 3347 1.871006 TGTATAACCCTAGCCCCCTCT 59.129 52.381 0.00 0.00 0.00 3.69
2915 3431 4.366586 GTCTAGGGTTTAGCCATTACGAC 58.633 47.826 0.26 0.00 39.65 4.34
2919 3435 2.558378 GGTTTAGCCATTACGACCTCC 58.442 52.381 0.00 0.00 37.17 4.30
2987 3503 6.157994 TCAAGCAGGAAGTATGGTATTACCTT 59.842 38.462 13.90 10.04 39.58 3.50
3026 3542 0.325602 TGGGTAAACATCGTGTCCCC 59.674 55.000 9.39 10.06 34.88 4.81
3085 3601 2.197875 CCCCTACCCGAGATCCGT 59.802 66.667 0.00 0.00 36.31 4.69
3115 3631 2.226437 ACACCGACATTGATGCTTTCAC 59.774 45.455 0.00 0.00 32.84 3.18
3376 3892 4.048470 GGCCCCAACCACCTCTCC 62.048 72.222 0.00 0.00 0.00 3.71
3408 3924 1.069090 GAGCACGTCACCAAGTCCA 59.931 57.895 0.00 0.00 0.00 4.02
3445 3961 3.753434 CGCCGGACTCTCTGCAGT 61.753 66.667 14.67 0.00 0.00 4.40
3453 3969 4.130857 CGGACTCTCTGCAGTTATAGAGA 58.869 47.826 27.85 16.23 45.20 3.10
3509 4027 2.078665 AGGCCCGGAGTTATGCCAT 61.079 57.895 17.88 2.40 46.45 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.728971 CTCAGTGCATTCCTCGTGTTC 59.271 52.381 0.00 0.00 0.00 3.18
63 64 2.287188 GGATTATCCACACAGCGCAATG 60.287 50.000 11.47 10.10 36.28 2.82
96 97 2.702592 AAGTTTCCGTCTGTCAACCA 57.297 45.000 0.00 0.00 0.00 3.67
166 167 8.899776 GTCACGTTTTAGTATTAGATACATCCG 58.100 37.037 0.00 0.00 38.21 4.18
233 235 4.601857 TCCAAACAAATACTTCCTCCTCCT 59.398 41.667 0.00 0.00 0.00 3.69
237 239 4.082733 GCACTCCAAACAAATACTTCCTCC 60.083 45.833 0.00 0.00 0.00 4.30
327 789 2.852075 TTCAGGGTGCGGGGAAGT 60.852 61.111 0.00 0.00 0.00 3.01
387 853 0.603707 CTGCGGAGACTTTGCTGGAA 60.604 55.000 0.00 0.00 0.00 3.53
388 854 1.004560 CTGCGGAGACTTTGCTGGA 60.005 57.895 0.00 0.00 0.00 3.86
390 856 1.864862 CACTGCGGAGACTTTGCTG 59.135 57.895 12.26 0.00 0.00 4.41
391 857 1.963338 GCACTGCGGAGACTTTGCT 60.963 57.895 12.26 0.00 0.00 3.91
392 858 2.558313 GCACTGCGGAGACTTTGC 59.442 61.111 12.26 6.18 0.00 3.68
393 859 0.886490 AAGGCACTGCGGAGACTTTG 60.886 55.000 12.26 0.00 40.86 2.77
394 860 0.685097 TAAGGCACTGCGGAGACTTT 59.315 50.000 16.71 7.59 40.86 2.66
395 861 0.905357 ATAAGGCACTGCGGAGACTT 59.095 50.000 15.79 15.79 40.86 3.01
396 862 0.905357 AATAAGGCACTGCGGAGACT 59.095 50.000 12.26 0.00 40.86 3.24
397 863 2.596904 TAATAAGGCACTGCGGAGAC 57.403 50.000 12.26 1.55 40.86 3.36
398 864 3.838244 AATAATAAGGCACTGCGGAGA 57.162 42.857 12.26 0.00 40.86 3.71
399 865 5.057149 AGTTAATAATAAGGCACTGCGGAG 58.943 41.667 0.85 0.85 40.86 4.63
400 866 5.031066 AGTTAATAATAAGGCACTGCGGA 57.969 39.130 0.00 0.00 40.86 5.54
401 867 4.084537 CGAGTTAATAATAAGGCACTGCGG 60.085 45.833 0.00 0.00 40.86 5.69
402 868 4.084537 CCGAGTTAATAATAAGGCACTGCG 60.085 45.833 0.00 0.00 40.86 5.18
403 869 5.050295 GTCCGAGTTAATAATAAGGCACTGC 60.050 44.000 0.00 0.00 40.86 4.40
404 870 6.046593 TGTCCGAGTTAATAATAAGGCACTG 58.953 40.000 0.00 0.00 40.86 3.66
406 872 6.238293 GGTTGTCCGAGTTAATAATAAGGCAC 60.238 42.308 0.00 0.00 0.00 5.01
407 873 5.818857 GGTTGTCCGAGTTAATAATAAGGCA 59.181 40.000 0.00 0.00 0.00 4.75
408 874 6.018180 CAGGTTGTCCGAGTTAATAATAAGGC 60.018 42.308 0.00 0.00 39.05 4.35
409 875 7.270047 TCAGGTTGTCCGAGTTAATAATAAGG 58.730 38.462 0.00 0.00 39.05 2.69
410 876 8.712285 TTCAGGTTGTCCGAGTTAATAATAAG 57.288 34.615 0.00 0.00 39.05 1.73
411 877 7.767198 CCTTCAGGTTGTCCGAGTTAATAATAA 59.233 37.037 0.00 0.00 39.05 1.40
412 878 7.270047 CCTTCAGGTTGTCCGAGTTAATAATA 58.730 38.462 0.00 0.00 39.05 0.98
413 879 6.113411 CCTTCAGGTTGTCCGAGTTAATAAT 58.887 40.000 0.00 0.00 39.05 1.28
414 880 5.484715 CCTTCAGGTTGTCCGAGTTAATAA 58.515 41.667 0.00 0.00 39.05 1.40
415 881 5.080969 CCTTCAGGTTGTCCGAGTTAATA 57.919 43.478 0.00 0.00 39.05 0.98
416 882 3.939066 CCTTCAGGTTGTCCGAGTTAAT 58.061 45.455 0.00 0.00 39.05 1.40
417 883 3.396260 CCTTCAGGTTGTCCGAGTTAA 57.604 47.619 0.00 0.00 39.05 2.01
430 896 5.039920 TCATGGTATCAATCACCTTCAGG 57.960 43.478 0.00 0.00 36.96 3.86
431 897 6.351711 TCTTCATGGTATCAATCACCTTCAG 58.648 40.000 0.00 0.00 36.96 3.02
432 898 6.312141 TCTTCATGGTATCAATCACCTTCA 57.688 37.500 0.00 0.00 36.96 3.02
433 899 6.238211 CGTTCTTCATGGTATCAATCACCTTC 60.238 42.308 0.00 0.00 36.96 3.46
434 900 5.586243 CGTTCTTCATGGTATCAATCACCTT 59.414 40.000 0.00 0.00 36.96 3.50
435 901 5.118990 CGTTCTTCATGGTATCAATCACCT 58.881 41.667 0.00 0.00 36.96 4.00
436 902 4.273480 CCGTTCTTCATGGTATCAATCACC 59.727 45.833 0.00 0.00 36.54 4.02
437 903 5.116180 TCCGTTCTTCATGGTATCAATCAC 58.884 41.667 0.00 0.00 32.49 3.06
438 904 5.351948 TCCGTTCTTCATGGTATCAATCA 57.648 39.130 0.00 0.00 32.49 2.57
439 905 4.752101 CCTCCGTTCTTCATGGTATCAATC 59.248 45.833 0.00 0.00 32.49 2.67
440 906 4.408921 TCCTCCGTTCTTCATGGTATCAAT 59.591 41.667 0.00 0.00 32.49 2.57
441 907 3.772572 TCCTCCGTTCTTCATGGTATCAA 59.227 43.478 0.00 0.00 32.49 2.57
442 908 3.132289 GTCCTCCGTTCTTCATGGTATCA 59.868 47.826 0.00 0.00 32.49 2.15
443 909 3.132289 TGTCCTCCGTTCTTCATGGTATC 59.868 47.826 0.00 0.00 32.49 2.24
444 910 3.104512 TGTCCTCCGTTCTTCATGGTAT 58.895 45.455 0.00 0.00 32.49 2.73
445 911 2.496070 CTGTCCTCCGTTCTTCATGGTA 59.504 50.000 0.00 0.00 32.49 3.25
446 912 1.276421 CTGTCCTCCGTTCTTCATGGT 59.724 52.381 0.00 0.00 32.49 3.55
447 913 1.276421 ACTGTCCTCCGTTCTTCATGG 59.724 52.381 0.00 0.00 0.00 3.66
448 914 2.611518 GACTGTCCTCCGTTCTTCATG 58.388 52.381 0.00 0.00 0.00 3.07
449 915 1.202582 CGACTGTCCTCCGTTCTTCAT 59.797 52.381 1.55 0.00 0.00 2.57
450 916 0.596577 CGACTGTCCTCCGTTCTTCA 59.403 55.000 1.55 0.00 0.00 3.02
451 917 0.109226 CCGACTGTCCTCCGTTCTTC 60.109 60.000 1.55 0.00 0.00 2.87
452 918 1.965219 CCGACTGTCCTCCGTTCTT 59.035 57.895 1.55 0.00 0.00 2.52
453 919 2.637383 GCCGACTGTCCTCCGTTCT 61.637 63.158 1.55 0.00 0.00 3.01
454 920 2.126031 GCCGACTGTCCTCCGTTC 60.126 66.667 1.55 0.00 0.00 3.95
455 921 4.052229 CGCCGACTGTCCTCCGTT 62.052 66.667 1.55 0.00 0.00 4.44
459 925 4.436998 CACCCGCCGACTGTCCTC 62.437 72.222 1.55 0.00 0.00 3.71
474 940 3.857109 AAAATTGCCGCCACCGCAC 62.857 57.895 0.00 0.00 34.03 5.34
475 941 3.565910 GAAAATTGCCGCCACCGCA 62.566 57.895 0.00 0.00 34.03 5.69
476 942 2.809174 GAAAATTGCCGCCACCGC 60.809 61.111 0.00 0.00 0.00 5.68
477 943 2.503809 CGAAAATTGCCGCCACCG 60.504 61.111 0.00 0.00 0.00 4.94
478 944 1.443702 GTCGAAAATTGCCGCCACC 60.444 57.895 0.00 0.00 0.00 4.61
479 945 1.795962 CGTCGAAAATTGCCGCCAC 60.796 57.895 0.00 0.00 0.00 5.01
480 946 1.302383 ATCGTCGAAAATTGCCGCCA 61.302 50.000 0.00 0.00 0.00 5.69
481 947 0.179174 AATCGTCGAAAATTGCCGCC 60.179 50.000 0.00 0.00 0.00 6.13
482 948 0.907171 CAATCGTCGAAAATTGCCGC 59.093 50.000 0.00 0.00 0.00 6.53
483 949 2.241259 ACAATCGTCGAAAATTGCCG 57.759 45.000 16.80 2.52 36.54 5.69
484 950 4.442733 TGAAAACAATCGTCGAAAATTGCC 59.557 37.500 16.80 7.92 36.54 4.52
485 951 5.553692 TGAAAACAATCGTCGAAAATTGC 57.446 34.783 16.80 5.61 36.54 3.56
486 952 9.660825 CATAATGAAAACAATCGTCGAAAATTG 57.339 29.630 15.77 15.77 38.54 2.32
487 953 8.372521 GCATAATGAAAACAATCGTCGAAAATT 58.627 29.630 0.00 0.00 0.00 1.82
488 954 7.754924 AGCATAATGAAAACAATCGTCGAAAAT 59.245 29.630 0.00 0.00 0.00 1.82
489 955 7.081349 AGCATAATGAAAACAATCGTCGAAAA 58.919 30.769 0.00 0.00 0.00 2.29
490 956 6.607689 AGCATAATGAAAACAATCGTCGAAA 58.392 32.000 0.00 0.00 0.00 3.46
491 957 6.176975 AGCATAATGAAAACAATCGTCGAA 57.823 33.333 0.00 0.00 0.00 3.71
492 958 5.794687 AGCATAATGAAAACAATCGTCGA 57.205 34.783 0.00 0.00 0.00 4.20
493 959 5.794945 ACAAGCATAATGAAAACAATCGTCG 59.205 36.000 0.00 0.00 0.00 5.12
494 960 6.801377 TCACAAGCATAATGAAAACAATCGTC 59.199 34.615 0.00 0.00 0.00 4.20
495 961 6.582295 GTCACAAGCATAATGAAAACAATCGT 59.418 34.615 0.00 0.00 0.00 3.73
496 962 6.803320 AGTCACAAGCATAATGAAAACAATCG 59.197 34.615 0.00 0.00 0.00 3.34
497 963 8.524870 AAGTCACAAGCATAATGAAAACAATC 57.475 30.769 0.00 0.00 0.00 2.67
498 964 8.143193 TGAAGTCACAAGCATAATGAAAACAAT 58.857 29.630 0.00 0.00 0.00 2.71
499 965 7.487484 TGAAGTCACAAGCATAATGAAAACAA 58.513 30.769 0.00 0.00 0.00 2.83
500 966 7.036996 TGAAGTCACAAGCATAATGAAAACA 57.963 32.000 0.00 0.00 0.00 2.83
501 967 8.430063 CAATGAAGTCACAAGCATAATGAAAAC 58.570 33.333 0.00 0.00 0.00 2.43
502 968 7.116662 GCAATGAAGTCACAAGCATAATGAAAA 59.883 33.333 0.00 0.00 0.00 2.29
503 969 6.587226 GCAATGAAGTCACAAGCATAATGAAA 59.413 34.615 0.00 0.00 0.00 2.69
504 970 6.071784 AGCAATGAAGTCACAAGCATAATGAA 60.072 34.615 0.00 0.00 0.00 2.57
505 971 5.416639 AGCAATGAAGTCACAAGCATAATGA 59.583 36.000 0.00 0.00 0.00 2.57
506 972 5.647589 AGCAATGAAGTCACAAGCATAATG 58.352 37.500 0.00 0.00 0.00 1.90
507 973 5.909621 AGCAATGAAGTCACAAGCATAAT 57.090 34.783 0.00 0.00 0.00 1.28
508 974 5.939883 AGTAGCAATGAAGTCACAAGCATAA 59.060 36.000 0.00 0.00 0.00 1.90
509 975 5.491070 AGTAGCAATGAAGTCACAAGCATA 58.509 37.500 0.00 0.00 0.00 3.14
510 976 4.330250 AGTAGCAATGAAGTCACAAGCAT 58.670 39.130 0.00 0.00 0.00 3.79
511 977 3.743521 AGTAGCAATGAAGTCACAAGCA 58.256 40.909 0.00 0.00 0.00 3.91
512 978 5.171476 TCTAGTAGCAATGAAGTCACAAGC 58.829 41.667 0.00 0.00 0.00 4.01
513 979 7.253917 CGAATCTAGTAGCAATGAAGTCACAAG 60.254 40.741 0.00 0.00 0.00 3.16
514 980 6.531594 CGAATCTAGTAGCAATGAAGTCACAA 59.468 38.462 0.00 0.00 0.00 3.33
515 981 6.036470 CGAATCTAGTAGCAATGAAGTCACA 58.964 40.000 0.00 0.00 0.00 3.58
516 982 6.266323 TCGAATCTAGTAGCAATGAAGTCAC 58.734 40.000 0.00 0.00 0.00 3.67
517 983 6.451064 TCGAATCTAGTAGCAATGAAGTCA 57.549 37.500 0.00 0.00 0.00 3.41
518 984 6.752351 TGTTCGAATCTAGTAGCAATGAAGTC 59.248 38.462 0.00 0.00 0.00 3.01
519 985 6.631016 TGTTCGAATCTAGTAGCAATGAAGT 58.369 36.000 0.00 0.00 0.00 3.01
520 986 7.706281 ATGTTCGAATCTAGTAGCAATGAAG 57.294 36.000 0.00 0.00 0.00 3.02
521 987 7.465916 GCAATGTTCGAATCTAGTAGCAATGAA 60.466 37.037 0.00 0.00 0.00 2.57
522 988 6.018751 GCAATGTTCGAATCTAGTAGCAATGA 60.019 38.462 0.00 0.00 0.00 2.57
523 989 6.132056 GCAATGTTCGAATCTAGTAGCAATG 58.868 40.000 0.00 0.00 0.00 2.82
524 990 5.817296 TGCAATGTTCGAATCTAGTAGCAAT 59.183 36.000 0.00 0.00 0.00 3.56
525 991 5.175127 TGCAATGTTCGAATCTAGTAGCAA 58.825 37.500 0.00 0.00 0.00 3.91
526 992 4.754322 TGCAATGTTCGAATCTAGTAGCA 58.246 39.130 0.00 3.42 0.00 3.49
527 993 5.063438 TGTTGCAATGTTCGAATCTAGTAGC 59.937 40.000 0.59 0.68 0.00 3.58
528 994 6.237942 CCTGTTGCAATGTTCGAATCTAGTAG 60.238 42.308 0.59 0.00 0.00 2.57
529 995 5.580691 CCTGTTGCAATGTTCGAATCTAGTA 59.419 40.000 0.59 0.00 0.00 1.82
530 996 4.393062 CCTGTTGCAATGTTCGAATCTAGT 59.607 41.667 0.59 0.00 0.00 2.57
531 997 4.201851 CCCTGTTGCAATGTTCGAATCTAG 60.202 45.833 0.59 0.00 0.00 2.43
532 998 3.689161 CCCTGTTGCAATGTTCGAATCTA 59.311 43.478 0.59 0.00 0.00 1.98
533 999 2.489329 CCCTGTTGCAATGTTCGAATCT 59.511 45.455 0.59 0.00 0.00 2.40
534 1000 2.487762 TCCCTGTTGCAATGTTCGAATC 59.512 45.455 0.59 0.00 0.00 2.52
535 1001 2.513753 TCCCTGTTGCAATGTTCGAAT 58.486 42.857 0.59 0.00 0.00 3.34
536 1002 1.974265 TCCCTGTTGCAATGTTCGAA 58.026 45.000 0.59 0.00 0.00 3.71
537 1003 1.879380 CTTCCCTGTTGCAATGTTCGA 59.121 47.619 0.59 0.00 0.00 3.71
538 1004 1.666888 GCTTCCCTGTTGCAATGTTCG 60.667 52.381 0.59 0.00 0.00 3.95
539 1005 1.340889 TGCTTCCCTGTTGCAATGTTC 59.659 47.619 0.59 0.00 33.48 3.18
540 1006 1.412079 TGCTTCCCTGTTGCAATGTT 58.588 45.000 0.59 0.00 33.48 2.71
541 1007 1.412079 TTGCTTCCCTGTTGCAATGT 58.588 45.000 0.59 0.00 41.06 2.71
542 1008 2.529780 TTTGCTTCCCTGTTGCAATG 57.470 45.000 0.59 0.00 44.55 2.82
543 1009 4.888326 TTATTTGCTTCCCTGTTGCAAT 57.112 36.364 0.59 0.00 44.55 3.56
544 1010 4.679373 TTTATTTGCTTCCCTGTTGCAA 57.321 36.364 0.00 0.00 43.69 4.08
545 1011 4.679373 TTTTATTTGCTTCCCTGTTGCA 57.321 36.364 0.00 0.00 34.69 4.08
546 1012 5.291858 GCTATTTTATTTGCTTCCCTGTTGC 59.708 40.000 0.00 0.00 0.00 4.17
547 1013 6.633856 AGCTATTTTATTTGCTTCCCTGTTG 58.366 36.000 0.00 0.00 30.96 3.33
548 1014 6.437162 TGAGCTATTTTATTTGCTTCCCTGTT 59.563 34.615 0.00 0.00 35.76 3.16
549 1015 5.951747 TGAGCTATTTTATTTGCTTCCCTGT 59.048 36.000 0.00 0.00 35.76 4.00
550 1016 6.455360 TGAGCTATTTTATTTGCTTCCCTG 57.545 37.500 0.00 0.00 35.76 4.45
551 1017 8.766994 TTATGAGCTATTTTATTTGCTTCCCT 57.233 30.769 0.00 0.00 35.76 4.20
552 1018 7.596621 GCTTATGAGCTATTTTATTTGCTTCCC 59.403 37.037 1.49 0.00 45.65 3.97
553 1019 8.512800 GCTTATGAGCTATTTTATTTGCTTCC 57.487 34.615 1.49 0.00 45.65 3.46
569 1035 5.735847 AGCTAAACTCGCAAGCTTATGAGC 61.736 45.833 21.05 10.84 43.97 4.26
570 1036 3.868077 AGCTAAACTCGCAAGCTTATGAG 59.132 43.478 20.03 20.03 43.97 2.90
571 1037 3.861840 AGCTAAACTCGCAAGCTTATGA 58.138 40.909 0.00 0.00 43.97 2.15
572 1038 5.718649 TTAGCTAAACTCGCAAGCTTATG 57.281 39.130 2.97 0.00 43.97 1.90
573 1039 6.927294 ATTTAGCTAAACTCGCAAGCTTAT 57.073 33.333 20.85 0.00 43.97 1.73
574 1040 6.737254 AATTTAGCTAAACTCGCAAGCTTA 57.263 33.333 20.85 0.00 43.97 3.09
575 1041 5.629079 AATTTAGCTAAACTCGCAAGCTT 57.371 34.783 20.85 5.67 43.97 3.74
577 1043 5.002561 CGAAAATTTAGCTAAACTCGCAAGC 59.997 40.000 20.85 5.19 36.48 4.01
578 1044 6.077838 ACGAAAATTTAGCTAAACTCGCAAG 58.922 36.000 29.07 18.15 32.72 4.01
579 1045 5.992729 ACGAAAATTTAGCTAAACTCGCAA 58.007 33.333 29.07 9.68 32.72 4.85
580 1046 5.600908 ACGAAAATTTAGCTAAACTCGCA 57.399 34.783 29.07 10.26 32.72 5.10
581 1047 6.075280 TCAACGAAAATTTAGCTAAACTCGC 58.925 36.000 29.07 17.46 32.72 5.03
582 1048 8.655378 AATCAACGAAAATTTAGCTAAACTCG 57.345 30.769 28.27 28.27 34.25 4.18
589 1055 9.132521 CAATCAGAAATCAACGAAAATTTAGCT 57.867 29.630 0.00 0.00 0.00 3.32
590 1056 9.128107 TCAATCAGAAATCAACGAAAATTTAGC 57.872 29.630 0.00 0.00 0.00 3.09
595 1061 9.695526 TCAAATCAATCAGAAATCAACGAAAAT 57.304 25.926 0.00 0.00 0.00 1.82
596 1062 9.184062 CTCAAATCAATCAGAAATCAACGAAAA 57.816 29.630 0.00 0.00 0.00 2.29
597 1063 7.809331 CCTCAAATCAATCAGAAATCAACGAAA 59.191 33.333 0.00 0.00 0.00 3.46
598 1064 7.174772 TCCTCAAATCAATCAGAAATCAACGAA 59.825 33.333 0.00 0.00 0.00 3.85
599 1065 6.654582 TCCTCAAATCAATCAGAAATCAACGA 59.345 34.615 0.00 0.00 0.00 3.85
600 1066 6.845302 TCCTCAAATCAATCAGAAATCAACG 58.155 36.000 0.00 0.00 0.00 4.10
601 1067 7.543520 GGTTCCTCAAATCAATCAGAAATCAAC 59.456 37.037 0.00 0.00 0.00 3.18
602 1068 7.452501 AGGTTCCTCAAATCAATCAGAAATCAA 59.547 33.333 0.00 0.00 0.00 2.57
603 1069 6.950041 AGGTTCCTCAAATCAATCAGAAATCA 59.050 34.615 0.00 0.00 0.00 2.57
604 1070 7.094032 ACAGGTTCCTCAAATCAATCAGAAATC 60.094 37.037 0.00 0.00 0.00 2.17
605 1071 6.723052 ACAGGTTCCTCAAATCAATCAGAAAT 59.277 34.615 0.00 0.00 0.00 2.17
606 1072 6.070656 ACAGGTTCCTCAAATCAATCAGAAA 58.929 36.000 0.00 0.00 0.00 2.52
607 1073 5.634118 ACAGGTTCCTCAAATCAATCAGAA 58.366 37.500 0.00 0.00 0.00 3.02
608 1074 5.246981 ACAGGTTCCTCAAATCAATCAGA 57.753 39.130 0.00 0.00 0.00 3.27
609 1075 7.452880 TTTACAGGTTCCTCAAATCAATCAG 57.547 36.000 0.00 0.00 0.00 2.90
610 1076 7.669304 TCATTTACAGGTTCCTCAAATCAATCA 59.331 33.333 5.48 0.00 0.00 2.57
611 1077 8.055279 TCATTTACAGGTTCCTCAAATCAATC 57.945 34.615 5.48 0.00 0.00 2.67
612 1078 8.421249 TTCATTTACAGGTTCCTCAAATCAAT 57.579 30.769 5.48 0.00 0.00 2.57
613 1079 7.831691 TTCATTTACAGGTTCCTCAAATCAA 57.168 32.000 5.48 0.00 0.00 2.57
614 1080 7.831691 TTTCATTTACAGGTTCCTCAAATCA 57.168 32.000 5.48 0.00 0.00 2.57
615 1081 9.143631 CAATTTCATTTACAGGTTCCTCAAATC 57.856 33.333 5.48 0.00 0.00 2.17
616 1082 8.650490 ACAATTTCATTTACAGGTTCCTCAAAT 58.350 29.630 0.00 0.00 0.00 2.32
617 1083 8.017418 ACAATTTCATTTACAGGTTCCTCAAA 57.983 30.769 0.00 0.00 0.00 2.69
618 1084 7.595819 ACAATTTCATTTACAGGTTCCTCAA 57.404 32.000 0.00 0.00 0.00 3.02
619 1085 8.698973 TTACAATTTCATTTACAGGTTCCTCA 57.301 30.769 0.00 0.00 0.00 3.86
620 1086 9.573133 CATTACAATTTCATTTACAGGTTCCTC 57.427 33.333 0.00 0.00 0.00 3.71
621 1087 9.308000 TCATTACAATTTCATTTACAGGTTCCT 57.692 29.630 0.00 0.00 0.00 3.36
622 1088 9.353999 GTCATTACAATTTCATTTACAGGTTCC 57.646 33.333 0.00 0.00 0.00 3.62
623 1089 9.353999 GGTCATTACAATTTCATTTACAGGTTC 57.646 33.333 0.00 0.00 0.00 3.62
624 1090 8.311109 GGGTCATTACAATTTCATTTACAGGTT 58.689 33.333 0.00 0.00 0.00 3.50
625 1091 7.673926 AGGGTCATTACAATTTCATTTACAGGT 59.326 33.333 0.00 0.00 0.00 4.00
626 1092 8.066612 AGGGTCATTACAATTTCATTTACAGG 57.933 34.615 0.00 0.00 0.00 4.00
627 1093 8.739039 TGAGGGTCATTACAATTTCATTTACAG 58.261 33.333 0.00 0.00 0.00 2.74
628 1094 8.519526 GTGAGGGTCATTACAATTTCATTTACA 58.480 33.333 0.00 0.00 0.00 2.41
629 1095 8.519526 TGTGAGGGTCATTACAATTTCATTTAC 58.480 33.333 0.00 0.00 0.00 2.01
630 1096 8.642935 TGTGAGGGTCATTACAATTTCATTTA 57.357 30.769 0.00 0.00 0.00 1.40
631 1097 7.537596 TGTGAGGGTCATTACAATTTCATTT 57.462 32.000 0.00 0.00 0.00 2.32
632 1098 7.537596 TTGTGAGGGTCATTACAATTTCATT 57.462 32.000 0.00 0.00 0.00 2.57
633 1099 7.537596 TTTGTGAGGGTCATTACAATTTCAT 57.462 32.000 0.00 0.00 33.56 2.57
634 1100 6.968263 TTTGTGAGGGTCATTACAATTTCA 57.032 33.333 0.00 0.00 33.56 2.69
635 1101 7.601856 TCATTTGTGAGGGTCATTACAATTTC 58.398 34.615 0.00 0.00 33.56 2.17
636 1102 7.537596 TCATTTGTGAGGGTCATTACAATTT 57.462 32.000 0.00 0.00 33.56 1.82
637 1103 7.178983 ACATCATTTGTGAGGGTCATTACAATT 59.821 33.333 0.00 0.00 37.11 2.32
638 1104 6.664816 ACATCATTTGTGAGGGTCATTACAAT 59.335 34.615 0.00 0.00 37.11 2.71
639 1105 6.009589 ACATCATTTGTGAGGGTCATTACAA 58.990 36.000 0.00 0.00 37.11 2.41
640 1106 5.569355 ACATCATTTGTGAGGGTCATTACA 58.431 37.500 0.00 0.00 37.11 2.41
641 1107 6.823689 AGTACATCATTTGTGAGGGTCATTAC 59.176 38.462 0.00 0.00 39.48 1.89
642 1108 6.957631 AGTACATCATTTGTGAGGGTCATTA 58.042 36.000 0.00 0.00 39.48 1.90
643 1109 5.819991 AGTACATCATTTGTGAGGGTCATT 58.180 37.500 0.00 0.00 39.48 2.57
644 1110 5.431765 GAGTACATCATTTGTGAGGGTCAT 58.568 41.667 0.00 0.00 39.48 3.06
645 1111 4.323485 GGAGTACATCATTTGTGAGGGTCA 60.323 45.833 0.00 0.00 39.48 4.02
646 1112 4.192317 GGAGTACATCATTTGTGAGGGTC 58.808 47.826 0.00 0.00 39.48 4.46
647 1113 3.587061 TGGAGTACATCATTTGTGAGGGT 59.413 43.478 0.00 0.00 39.48 4.34
648 1114 4.220693 TGGAGTACATCATTTGTGAGGG 57.779 45.455 0.00 0.00 39.48 4.30
664 1130 8.305317 GCTCTTATATTAGTTTACGGATGGAGT 58.695 37.037 0.00 0.00 0.00 3.85
665 1131 7.485277 CGCTCTTATATTAGTTTACGGATGGAG 59.515 40.741 0.00 0.00 0.00 3.86
666 1132 7.040201 ACGCTCTTATATTAGTTTACGGATGGA 60.040 37.037 0.00 0.00 0.00 3.41
667 1133 7.088905 ACGCTCTTATATTAGTTTACGGATGG 58.911 38.462 0.00 0.00 0.00 3.51
668 1134 8.516811 AACGCTCTTATATTAGTTTACGGATG 57.483 34.615 0.00 0.00 0.00 3.51
670 1136 9.669353 CTAAACGCTCTTATATTAGTTTACGGA 57.331 33.333 0.00 0.00 34.29 4.69
671 1137 9.669353 TCTAAACGCTCTTATATTAGTTTACGG 57.331 33.333 0.00 0.00 34.29 4.02
681 1147 9.339492 GCGTTAGTAATCTAAACGCTCTTATAT 57.661 33.333 20.66 0.00 43.81 0.86
682 1148 8.719478 GCGTTAGTAATCTAAACGCTCTTATA 57.281 34.615 20.66 0.00 43.81 0.98
683 1149 7.620397 GCGTTAGTAATCTAAACGCTCTTAT 57.380 36.000 20.66 0.00 43.81 1.73
685 1151 5.945775 GCGTTAGTAATCTAAACGCTCTT 57.054 39.130 20.66 0.00 43.81 2.85
689 1155 5.945775 AAGAGCGTTAGTAATCTAAACGC 57.054 39.130 20.45 20.45 45.31 4.84
703 1169 9.953697 CTCTCTGTAAACTAATATAAGAGCGTT 57.046 33.333 0.00 0.00 0.00 4.84
704 1170 9.339850 TCTCTCTGTAAACTAATATAAGAGCGT 57.660 33.333 0.00 0.00 0.00 5.07
705 1171 9.820229 CTCTCTCTGTAAACTAATATAAGAGCG 57.180 37.037 0.00 0.00 0.00 5.03
713 1179 9.463902 AGCAAGTACTCTCTCTGTAAACTAATA 57.536 33.333 0.00 0.00 0.00 0.98
714 1180 8.356000 AGCAAGTACTCTCTCTGTAAACTAAT 57.644 34.615 0.00 0.00 0.00 1.73
715 1181 7.762588 AGCAAGTACTCTCTCTGTAAACTAA 57.237 36.000 0.00 0.00 0.00 2.24
716 1182 9.111613 GATAGCAAGTACTCTCTCTGTAAACTA 57.888 37.037 0.00 0.00 0.00 2.24
717 1183 7.832187 AGATAGCAAGTACTCTCTCTGTAAACT 59.168 37.037 0.00 0.00 0.00 2.66
718 1184 7.992008 AGATAGCAAGTACTCTCTCTGTAAAC 58.008 38.462 0.00 0.00 0.00 2.01
719 1185 8.050325 AGAGATAGCAAGTACTCTCTCTGTAAA 58.950 37.037 15.40 0.00 44.25 2.01
720 1186 7.570132 AGAGATAGCAAGTACTCTCTCTGTAA 58.430 38.462 15.40 0.00 44.25 2.41
721 1187 7.131907 AGAGATAGCAAGTACTCTCTCTGTA 57.868 40.000 15.40 1.27 44.25 2.74
722 1188 6.001449 AGAGATAGCAAGTACTCTCTCTGT 57.999 41.667 15.40 6.16 44.25 3.41
723 1189 8.506437 CATTAGAGATAGCAAGTACTCTCTCTG 58.494 40.741 20.66 13.66 45.04 3.35
724 1190 8.436778 TCATTAGAGATAGCAAGTACTCTCTCT 58.563 37.037 12.01 15.59 46.30 3.10
725 1191 8.615878 TCATTAGAGATAGCAAGTACTCTCTC 57.384 38.462 12.01 10.64 42.56 3.20
726 1192 8.988546 TTCATTAGAGATAGCAAGTACTCTCT 57.011 34.615 12.94 12.94 44.89 3.10
836 1302 4.803426 GTGACTGCGGCCTCCTCG 62.803 72.222 0.00 0.00 0.00 4.63
899 1365 5.238583 AGTAGAGTCCAAACACTTGCATAC 58.761 41.667 0.00 0.00 0.00 2.39
1536 2024 4.040645 CAGCTGCTAGAGGTGGGA 57.959 61.111 0.00 0.00 45.05 4.37
1576 2064 2.359850 TGCAATGTGGGACCGCTC 60.360 61.111 3.31 0.00 0.00 5.03
1603 2091 3.749064 GCTCTCGTGACGGCCAGA 61.749 66.667 4.70 0.00 0.00 3.86
1611 2099 3.371063 GTCCACCCGCTCTCGTGA 61.371 66.667 0.00 0.00 31.36 4.35
1641 2129 7.649306 GCAATGTCTATAATGAATTTTTCGCCT 59.351 33.333 0.00 0.00 0.00 5.52
1728 2216 2.295885 CCCTCTGCCTTCATGTCAATC 58.704 52.381 0.00 0.00 0.00 2.67
1801 2289 0.270699 TGGGCCTCATATACCTGGGT 59.729 55.000 4.53 0.00 0.00 4.51
1825 2331 2.161486 GCTTGCCGTGTAGCTCGAG 61.161 63.158 8.45 8.45 34.57 4.04
1846 2352 4.380531 CACCAACGATCTATTGCCATAGT 58.619 43.478 4.83 0.00 34.85 2.12
1949 2458 7.385752 CGTGGTCACCAAAATTAAGTACTTCTA 59.614 37.037 12.39 1.88 34.18 2.10
2326 2840 3.517901 TCCTTTTCGTACACCATCCTCAT 59.482 43.478 0.00 0.00 0.00 2.90
2407 2921 5.835113 ATACACAAACCCATAGCATCAAC 57.165 39.130 0.00 0.00 0.00 3.18
2446 2960 6.655003 TCAGAATGGACAGAGGTATTTCAAAC 59.345 38.462 0.00 0.00 36.16 2.93
2448 2962 6.173339 GTCAGAATGGACAGAGGTATTTCAA 58.827 40.000 0.00 0.00 37.73 2.69
2490 3004 4.031878 GGTTCATTCGTCTTCATCGACTTC 59.968 45.833 0.00 0.00 37.05 3.01
2526 3040 1.060937 GGTTGCACATGTCGCGATC 59.939 57.895 14.06 6.94 0.00 3.69
2532 3046 2.625823 CCGTGGGGTTGCACATGTC 61.626 63.158 0.00 0.00 0.00 3.06
2556 3070 6.942005 TCAGAATTCACACCACAATAGTTGAT 59.058 34.615 8.44 0.00 0.00 2.57
2584 3098 4.712337 CCTCTTTCCTTGCCTCTCTTACTA 59.288 45.833 0.00 0.00 0.00 1.82
2585 3099 3.517500 CCTCTTTCCTTGCCTCTCTTACT 59.482 47.826 0.00 0.00 0.00 2.24
2597 3111 3.267812 TGAATCATCAGGCCTCTTTCCTT 59.732 43.478 0.00 0.00 0.00 3.36
2804 3320 3.484407 GGCTAGGGTTATACAGAGTCGA 58.516 50.000 0.00 0.00 0.00 4.20
2831 3347 2.974099 CCCCCGGTTTATATAGACACCA 59.026 50.000 0.00 0.00 0.00 4.17
2860 3376 8.633561 CCTATATGATTATGATTGCCTCTACGA 58.366 37.037 0.00 0.00 0.00 3.43
2915 3431 3.772025 ACAAGAGTTGATCTACCTGGAGG 59.228 47.826 0.00 0.00 37.23 4.30
2919 3435 5.420409 GGGTTACAAGAGTTGATCTACCTG 58.580 45.833 3.54 2.52 37.23 4.00
2987 3503 0.544697 GGTTCGGGCCCTCTTAATGA 59.455 55.000 22.43 4.41 0.00 2.57
3026 3542 2.159085 GGGTCGAAGGTAACAGGAGATG 60.159 54.545 0.00 0.00 41.41 2.90
3344 3860 4.796495 GCCGCGAACCCCTGGAAT 62.796 66.667 8.23 0.00 0.00 3.01
3376 3892 2.340443 GCTCCGGATCTAAGGCCG 59.660 66.667 3.57 0.00 46.80 6.13
3445 3961 7.980662 CCGGTTCTCTAGTATCGATCTCTATAA 59.019 40.741 0.00 0.00 0.00 0.98
3453 3969 3.559597 CCCTCCGGTTCTCTAGTATCGAT 60.560 52.174 2.16 2.16 0.00 3.59
3477 3995 2.897350 GCCTGCCGGTGATGCTAC 60.897 66.667 1.90 0.00 0.00 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.