Multiple sequence alignment - TraesCS2A01G419100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G419100 chr2A 100.000 3993 0 0 1 3993 674506259 674510251 0.000000e+00 7374.0
1 TraesCS2A01G419100 chr2D 92.387 3113 150 45 410 3493 529670208 529673262 0.000000e+00 4355.0
2 TraesCS2A01G419100 chr2D 91.294 425 29 6 1 422 529669757 529670176 1.240000e-159 573.0
3 TraesCS2A01G419100 chr2D 91.429 105 9 0 3638 3742 529673410 529673514 1.160000e-30 145.0
4 TraesCS2A01G419100 chr2D 86.992 123 10 1 3522 3638 529673259 529673381 2.500000e-27 134.0
5 TraesCS2A01G419100 chr2D 93.333 60 4 0 3759 3818 529673508 529673567 5.500000e-14 89.8
6 TraesCS2A01G419100 chr2B 87.768 1447 91 33 410 1814 629807150 629808552 0.000000e+00 1613.0
7 TraesCS2A01G419100 chr2B 91.051 1218 66 14 1918 3096 629808601 629809814 0.000000e+00 1605.0
8 TraesCS2A01G419100 chr2B 95.434 219 9 1 1 219 629806423 629806640 8.210000e-92 348.0
9 TraesCS2A01G419100 chr2B 86.378 323 21 3 3093 3392 629809957 629810279 8.270000e-87 331.0
10 TraesCS2A01G419100 chr2B 89.952 209 20 1 217 425 629806914 629807121 6.580000e-68 268.0
11 TraesCS2A01G419100 chr2B 87.678 211 15 5 3434 3638 629810290 629810495 6.670000e-58 235.0
12 TraesCS2A01G419100 chr2B 88.119 101 8 3 3638 3734 629810524 629810624 2.520000e-22 117.0
13 TraesCS2A01G419100 chr5B 85.185 81 9 3 445 524 355236132 355236054 3.310000e-11 80.5
14 TraesCS2A01G419100 chr7D 81.111 90 16 1 445 534 149082826 149082914 1.990000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G419100 chr2A 674506259 674510251 3992 False 7374.000000 7374 100.000000 1 3993 1 chr2A.!!$F1 3992
1 TraesCS2A01G419100 chr2D 529669757 529673567 3810 False 1059.360000 4355 91.087000 1 3818 5 chr2D.!!$F1 3817
2 TraesCS2A01G419100 chr2B 629806423 629810624 4201 False 645.285714 1613 89.482857 1 3734 7 chr2B.!!$F1 3733

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
774 1099 0.100503 GGGGCAATTCCGTCAATTCG 59.899 55.0 0.0 0.0 31.79 3.34 F
1182 1525 0.314302 ACTTCCACAAGGTCTCGTCG 59.686 55.0 0.0 0.0 33.37 5.12 F
1183 1526 0.314302 CTTCCACAAGGTCTCGTCGT 59.686 55.0 0.0 0.0 35.89 4.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2204 2574 0.315251 CCAGCTGTGTCTTCAGTCGA 59.685 55.000 13.81 0.0 37.7 4.20 R
2929 3336 0.250513 ACCGAGGCAAGTCATCTTCC 59.749 55.000 0.00 0.0 0.0 3.46 R
3050 3459 4.469945 CAGATGGGACCAAAGTTAGTAGGA 59.530 45.833 0.00 0.0 0.0 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 7.543947 AGTTACACAGTTGTTTTGTAGTACC 57.456 36.000 0.00 0.00 37.15 3.34
101 102 5.353123 ACAGTTGTTTTGTAGTACCTGTGTG 59.647 40.000 5.61 0.00 0.00 3.82
244 521 7.984050 ACTCACTGAATATTGGTCTAACTGATG 59.016 37.037 0.00 0.00 0.00 3.07
251 528 8.877864 AATATTGGTCTAACTGATGGTCAAAA 57.122 30.769 0.00 0.00 0.00 2.44
266 543 8.739039 TGATGGTCAAAATAAAATCTCGACAAT 58.261 29.630 0.00 0.00 0.00 2.71
279 556 1.885887 TCGACAATTGGGGAAGCTTTG 59.114 47.619 10.83 0.00 0.00 2.77
304 581 0.663153 GAACCGCCAAGGCATCATAC 59.337 55.000 12.19 0.00 46.52 2.39
324 601 8.440021 TCATACTTTCGTACGAAAACTAAGAC 57.560 34.615 35.09 0.00 42.61 3.01
334 611 6.701432 ACGAAAACTAAGACGGATAAGTTG 57.299 37.500 0.00 0.00 32.69 3.16
337 614 6.529125 CGAAAACTAAGACGGATAAGTTGCTA 59.471 38.462 0.00 0.00 32.69 3.49
370 647 3.006940 TGGATTCCAATACGCAGTGAAC 58.993 45.455 1.94 0.00 45.73 3.18
395 672 1.143684 GCTAGGAGGGATGGCATTTGA 59.856 52.381 0.00 0.00 0.00 2.69
403 680 5.308014 GAGGGATGGCATTTGAAACTTTTT 58.692 37.500 0.00 0.00 0.00 1.94
471 792 0.516524 GTTGTTTGATCTCGCGTCGC 60.517 55.000 7.29 7.29 0.00 5.19
513 834 2.227194 GTGTTCGTTTTGTCATCCCCT 58.773 47.619 0.00 0.00 0.00 4.79
524 845 2.131023 GTCATCCCCTTCCCAGAGAAT 58.869 52.381 0.00 0.00 32.82 2.40
552 873 4.438744 GCCAGATAACAATTCCGGTCTTTG 60.439 45.833 0.00 6.78 0.00 2.77
554 875 5.878116 CCAGATAACAATTCCGGTCTTTGTA 59.122 40.000 16.00 8.26 33.44 2.41
559 880 8.974060 ATAACAATTCCGGTCTTTGTATGTAT 57.026 30.769 16.00 9.96 33.44 2.29
620 944 7.420002 TGATTTCACTCAGATTGTCAAAACAG 58.580 34.615 0.00 0.00 36.57 3.16
621 945 6.757897 TTTCACTCAGATTGTCAAAACAGT 57.242 33.333 0.00 0.00 36.57 3.55
623 947 7.482654 TTCACTCAGATTGTCAAAACAGTAG 57.517 36.000 0.00 0.00 36.57 2.57
625 949 6.479990 TCACTCAGATTGTCAAAACAGTAGTG 59.520 38.462 0.00 0.00 36.57 2.74
626 950 5.237344 ACTCAGATTGTCAAAACAGTAGTGC 59.763 40.000 0.00 0.00 36.57 4.40
627 951 5.368145 TCAGATTGTCAAAACAGTAGTGCT 58.632 37.500 0.00 0.00 36.57 4.40
628 952 6.521162 TCAGATTGTCAAAACAGTAGTGCTA 58.479 36.000 0.00 0.00 36.57 3.49
640 964 4.338400 ACAGTAGTGCTAAGATCATACGCA 59.662 41.667 0.00 0.00 0.00 5.24
656 980 1.339929 ACGCACCCACAATTCTTTTCC 59.660 47.619 0.00 0.00 0.00 3.13
661 986 4.452114 GCACCCACAATTCTTTTCCATTTC 59.548 41.667 0.00 0.00 0.00 2.17
706 1031 2.021457 ACCACAAGCTACAACCACAAC 58.979 47.619 0.00 0.00 0.00 3.32
707 1032 2.020720 CCACAAGCTACAACCACAACA 58.979 47.619 0.00 0.00 0.00 3.33
709 1034 1.668751 ACAAGCTACAACCACAACACG 59.331 47.619 0.00 0.00 0.00 4.49
710 1035 1.002900 CAAGCTACAACCACAACACGG 60.003 52.381 0.00 0.00 0.00 4.94
711 1036 0.534203 AGCTACAACCACAACACGGG 60.534 55.000 0.00 0.00 0.00 5.28
713 1038 0.534203 CTACAACCACAACACGGGCT 60.534 55.000 0.00 0.00 0.00 5.19
714 1039 0.533308 TACAACCACAACACGGGCTC 60.533 55.000 0.00 0.00 0.00 4.70
718 1043 2.669569 CACAACACGGGCTCCCAG 60.670 66.667 5.70 0.00 35.37 4.45
752 1077 2.735762 CGGAAAGATCGAGGTTCTGGAC 60.736 54.545 0.00 0.00 0.00 4.02
774 1099 0.100503 GGGGCAATTCCGTCAATTCG 59.899 55.000 0.00 0.00 31.79 3.34
776 1101 0.861450 GGCAATTCCGTCAATTCGCG 60.861 55.000 0.00 0.00 31.79 5.87
914 1253 3.318275 TCATTCTCGATTCCCCTCGTTAG 59.682 47.826 0.00 0.00 39.62 2.34
936 1275 4.012138 CCCCCAAATTCCACGACC 57.988 61.111 0.00 0.00 0.00 4.79
937 1276 1.382629 CCCCCAAATTCCACGACCT 59.617 57.895 0.00 0.00 0.00 3.85
941 1280 1.173913 CCAAATTCCACGACCTTCCC 58.826 55.000 0.00 0.00 0.00 3.97
942 1281 1.271926 CCAAATTCCACGACCTTCCCT 60.272 52.381 0.00 0.00 0.00 4.20
946 1285 3.400054 CCACGACCTTCCCTCCCC 61.400 72.222 0.00 0.00 0.00 4.81
947 1286 2.284699 CACGACCTTCCCTCCCCT 60.285 66.667 0.00 0.00 0.00 4.79
948 1287 2.039137 ACGACCTTCCCTCCCCTC 59.961 66.667 0.00 0.00 0.00 4.30
949 1288 2.764547 CGACCTTCCCTCCCCTCC 60.765 72.222 0.00 0.00 0.00 4.30
950 1289 2.367107 GACCTTCCCTCCCCTCCC 60.367 72.222 0.00 0.00 0.00 4.30
951 1290 4.040198 ACCTTCCCTCCCCTCCCC 62.040 72.222 0.00 0.00 0.00 4.81
952 1291 4.845307 CCTTCCCTCCCCTCCCCC 62.845 77.778 0.00 0.00 0.00 5.40
953 1292 4.038804 CTTCCCTCCCCTCCCCCA 62.039 72.222 0.00 0.00 0.00 4.96
954 1293 3.558124 TTCCCTCCCCTCCCCCAA 61.558 66.667 0.00 0.00 0.00 4.12
955 1294 3.149764 TTCCCTCCCCTCCCCCAAA 62.150 63.158 0.00 0.00 0.00 3.28
956 1295 2.287975 CCCTCCCCTCCCCCAAAT 60.288 66.667 0.00 0.00 0.00 2.32
957 1296 2.395353 CCCTCCCCTCCCCCAAATC 61.395 68.421 0.00 0.00 0.00 2.17
991 1330 3.224324 GCTCGGCCCCAGATCGTA 61.224 66.667 0.00 0.00 0.00 3.43
992 1331 2.728817 CTCGGCCCCAGATCGTAC 59.271 66.667 0.00 0.00 0.00 3.67
994 1333 4.280494 CGGCCCCAGATCGTACCG 62.280 72.222 0.00 0.00 0.00 4.02
995 1334 3.152400 GGCCCCAGATCGTACCGT 61.152 66.667 0.00 0.00 0.00 4.83
997 1336 2.420568 GCCCCAGATCGTACCGTGA 61.421 63.158 0.00 0.00 0.00 4.35
998 1337 1.734137 CCCCAGATCGTACCGTGAG 59.266 63.158 0.00 0.00 0.00 3.51
1182 1525 0.314302 ACTTCCACAAGGTCTCGTCG 59.686 55.000 0.00 0.00 33.37 5.12
1183 1526 0.314302 CTTCCACAAGGTCTCGTCGT 59.686 55.000 0.00 0.00 35.89 4.34
1184 1527 0.748450 TTCCACAAGGTCTCGTCGTT 59.252 50.000 0.00 0.00 35.89 3.85
1254 1611 2.202824 TAGATTTCGGTGCGGCGG 60.203 61.111 9.78 0.00 0.00 6.13
1278 1635 0.958876 CTGGGGTTGTCGTTTAGGGC 60.959 60.000 0.00 0.00 0.00 5.19
1285 1642 1.255882 TGTCGTTTAGGGCGAAGGTA 58.744 50.000 0.00 0.00 40.19 3.08
1324 1681 4.489249 TCGAGATTTCCGCGAACC 57.511 55.556 8.23 0.00 43.81 3.62
1380 1737 2.198827 TGATCTTTGTGGCCACGATT 57.801 45.000 30.07 16.25 0.00 3.34
1381 1738 2.513753 TGATCTTTGTGGCCACGATTT 58.486 42.857 30.07 15.90 0.00 2.17
1382 1745 2.228582 TGATCTTTGTGGCCACGATTTG 59.771 45.455 30.07 20.03 0.00 2.32
1447 1811 0.319405 AAATTTGGCTGACCTGCTGC 59.681 50.000 0.00 0.00 40.38 5.25
1489 1853 4.816925 GGGTATCAGAATCCAGTTTACTGC 59.183 45.833 4.34 0.00 42.47 4.40
1505 1869 2.949447 ACTGCCTTGACTGAATTGGTT 58.051 42.857 0.00 0.00 0.00 3.67
1533 1897 0.995024 AGGCCAAGTGATACCTTGCT 59.005 50.000 5.01 0.00 40.40 3.91
1595 1959 9.737025 GAAGATAAAAACTGAACGTGTACATAC 57.263 33.333 0.00 0.00 0.00 2.39
1596 1960 9.485206 AAGATAAAAACTGAACGTGTACATACT 57.515 29.630 0.00 0.00 0.00 2.12
1599 1963 9.695526 ATAAAAACTGAACGTGTACATACTACA 57.304 29.630 0.00 0.00 0.00 2.74
1600 1964 8.597662 AAAAACTGAACGTGTACATACTACAT 57.402 30.769 0.00 0.00 0.00 2.29
1601 1965 9.695526 AAAAACTGAACGTGTACATACTACATA 57.304 29.630 0.00 0.00 0.00 2.29
1614 1978 6.166279 ACATACTACATAGCATTTCCGATGG 58.834 40.000 0.00 0.00 0.00 3.51
1621 1985 3.185246 AGCATTTCCGATGGACTAGTG 57.815 47.619 0.00 0.00 0.00 2.74
1630 1994 3.525537 CGATGGACTAGTGAACAATGCT 58.474 45.455 0.00 0.00 0.00 3.79
1632 1996 4.201753 CGATGGACTAGTGAACAATGCTTG 60.202 45.833 0.00 0.00 0.00 4.01
1679 2043 0.389166 GTGTCTCAGGCTCTGAACCG 60.389 60.000 6.39 0.00 40.18 4.44
1754 2118 8.274322 TGATATTGAATGGACTGTTTCTATGGT 58.726 33.333 0.00 0.00 0.00 3.55
1759 2123 6.775142 TGAATGGACTGTTTCTATGGTGAAAA 59.225 34.615 0.00 0.00 37.63 2.29
1777 2141 9.667107 TGGTGAAAATTTATTGTGGTGTTAAAA 57.333 25.926 0.00 0.00 0.00 1.52
1800 2165 9.918630 AAAATGAAATTCCATTGAGTAGTCAAG 57.081 29.630 17.61 10.00 40.24 3.02
1801 2166 8.641498 AATGAAATTCCATTGAGTAGTCAAGT 57.359 30.769 17.61 4.66 45.96 3.16
1802 2167 9.739276 AATGAAATTCCATTGAGTAGTCAAGTA 57.261 29.630 17.61 3.97 45.96 2.24
1803 2168 9.911788 ATGAAATTCCATTGAGTAGTCAAGTAT 57.088 29.630 17.61 6.35 45.96 2.12
1809 2174 8.768501 TCCATTGAGTAGTCAAGTATATCTGT 57.231 34.615 17.61 0.00 45.96 3.41
1810 2175 9.862149 TCCATTGAGTAGTCAAGTATATCTGTA 57.138 33.333 17.61 0.00 45.96 2.74
1815 2180 9.078990 TGAGTAGTCAAGTATATCTGTATTGGG 57.921 37.037 0.00 0.00 0.00 4.12
1816 2181 7.897864 AGTAGTCAAGTATATCTGTATTGGGC 58.102 38.462 0.00 0.00 0.00 5.36
1817 2182 7.730784 AGTAGTCAAGTATATCTGTATTGGGCT 59.269 37.037 0.00 0.00 0.00 5.19
1818 2183 9.021807 GTAGTCAAGTATATCTGTATTGGGCTA 57.978 37.037 0.00 0.00 0.00 3.93
1819 2184 8.492415 AGTCAAGTATATCTGTATTGGGCTAA 57.508 34.615 0.00 0.00 0.00 3.09
1820 2185 8.934697 AGTCAAGTATATCTGTATTGGGCTAAA 58.065 33.333 0.00 0.00 0.00 1.85
1821 2186 9.555727 GTCAAGTATATCTGTATTGGGCTAAAA 57.444 33.333 0.00 0.00 0.00 1.52
1869 2238 5.585820 AATATGTGCATGAGAAATGTGCA 57.414 34.783 0.00 0.00 0.00 4.57
1897 2266 5.440234 ACGAAGCATACTGTAGTAGATGG 57.560 43.478 0.00 0.00 33.52 3.51
1902 2271 4.051922 GCATACTGTAGTAGATGGTGTGC 58.948 47.826 0.00 0.00 37.71 4.57
1903 2272 4.441495 GCATACTGTAGTAGATGGTGTGCA 60.441 45.833 0.00 0.00 41.96 4.57
1908 2277 1.218047 GTAGATGGTGTGCAGGCGA 59.782 57.895 0.00 0.00 0.00 5.54
1910 2279 1.257750 TAGATGGTGTGCAGGCGACT 61.258 55.000 0.00 0.00 46.44 4.18
1925 2294 2.356695 GGCGACTAAAACAACAGTGGTT 59.643 45.455 0.00 0.00 35.66 3.67
1939 2308 5.290493 ACAGTGGTTGTGTATTTCTCTGA 57.710 39.130 0.00 0.00 38.99 3.27
2021 2391 9.468532 AGCAACACTGAATTTTCTTCTTTTATC 57.531 29.630 0.00 0.00 0.00 1.75
2195 2565 9.796242 AATCCATCCTCTGAAGTATATAGGAAT 57.204 33.333 0.00 0.00 39.68 3.01
2204 2574 9.319060 TCTGAAGTATATAGGAATCTTCATGCT 57.681 33.333 11.19 0.00 41.88 3.79
2356 2736 6.147821 TCGAAAGCAAGATTTAAGGAACAGAG 59.852 38.462 0.00 0.00 0.00 3.35
2421 2828 7.319646 ACATCAGTGTATCAACTTCTCTCTTC 58.680 38.462 0.00 0.00 36.63 2.87
2524 2931 0.744771 CTTTGAAGTCGCTAGCCCCC 60.745 60.000 9.66 0.00 0.00 5.40
2653 3060 5.009410 ACCTTCTGCAAAAGTGATTCTTGAG 59.991 40.000 0.00 0.00 36.40 3.02
2762 3169 1.133853 AGGGCCATTCAGAGCTTGATC 60.134 52.381 6.18 0.00 35.27 2.92
2929 3336 4.037803 AGTGAAGATGACGAGGATGATGAG 59.962 45.833 0.00 0.00 0.00 2.90
3050 3459 2.017049 GGATAGCCGTTTGACAGCATT 58.983 47.619 0.00 0.00 0.00 3.56
3277 3857 2.795329 GCAGGTTTCTGGATCTGGAAA 58.205 47.619 8.70 8.70 41.19 3.13
3416 3996 4.191544 TCTTAGCCCATTGTTCATCTTCG 58.808 43.478 0.00 0.00 0.00 3.79
3456 4036 6.940739 AGCAGTCTCTGTACATAGATTTTGT 58.059 36.000 13.45 0.00 33.43 2.83
3492 4072 8.964420 TGTATAAAAAGCTTATTTGTGTCTGC 57.036 30.769 0.00 0.00 0.00 4.26
3493 4073 8.026607 TGTATAAAAAGCTTATTTGTGTCTGCC 58.973 33.333 0.00 0.00 0.00 4.85
3494 4074 3.942130 AAAGCTTATTTGTGTCTGCCC 57.058 42.857 0.00 0.00 0.00 5.36
3495 4075 1.839424 AGCTTATTTGTGTCTGCCCC 58.161 50.000 0.00 0.00 0.00 5.80
3496 4076 1.075374 AGCTTATTTGTGTCTGCCCCA 59.925 47.619 0.00 0.00 0.00 4.96
3497 4077 1.892474 GCTTATTTGTGTCTGCCCCAA 59.108 47.619 0.00 0.00 0.00 4.12
3498 4078 2.094545 GCTTATTTGTGTCTGCCCCAAG 60.095 50.000 0.00 0.00 0.00 3.61
3499 4079 3.420893 CTTATTTGTGTCTGCCCCAAGA 58.579 45.455 0.00 0.00 0.00 3.02
3500 4080 1.620822 ATTTGTGTCTGCCCCAAGAC 58.379 50.000 0.00 0.00 45.70 3.01
3505 4085 3.965888 GTCTGCCCCAAGACATCTT 57.034 52.632 0.00 0.00 44.98 2.40
3506 4086 2.206576 GTCTGCCCCAAGACATCTTT 57.793 50.000 0.00 0.00 44.98 2.52
3507 4087 2.087646 GTCTGCCCCAAGACATCTTTC 58.912 52.381 0.00 0.00 44.98 2.62
3508 4088 1.988107 TCTGCCCCAAGACATCTTTCT 59.012 47.619 0.00 0.00 33.11 2.52
3509 4089 2.026822 TCTGCCCCAAGACATCTTTCTC 60.027 50.000 0.00 0.00 33.11 2.87
3510 4090 1.704628 TGCCCCAAGACATCTTTCTCA 59.295 47.619 0.00 0.00 33.11 3.27
3511 4091 2.087646 GCCCCAAGACATCTTTCTCAC 58.912 52.381 0.00 0.00 33.11 3.51
3512 4092 2.553028 GCCCCAAGACATCTTTCTCACA 60.553 50.000 0.00 0.00 33.11 3.58
3513 4093 3.754965 CCCCAAGACATCTTTCTCACAA 58.245 45.455 0.00 0.00 33.11 3.33
3514 4094 4.338879 CCCCAAGACATCTTTCTCACAAT 58.661 43.478 0.00 0.00 33.11 2.71
3515 4095 4.768968 CCCCAAGACATCTTTCTCACAATT 59.231 41.667 0.00 0.00 33.11 2.32
3516 4096 5.244626 CCCCAAGACATCTTTCTCACAATTT 59.755 40.000 0.00 0.00 33.11 1.82
3517 4097 6.385033 CCCAAGACATCTTTCTCACAATTTC 58.615 40.000 0.00 0.00 33.11 2.17
3518 4098 6.016024 CCCAAGACATCTTTCTCACAATTTCA 60.016 38.462 0.00 0.00 33.11 2.69
3519 4099 7.082602 CCAAGACATCTTTCTCACAATTTCAG 58.917 38.462 0.00 0.00 33.11 3.02
3520 4100 6.251655 AGACATCTTTCTCACAATTTCAGC 57.748 37.500 0.00 0.00 0.00 4.26
3539 4150 4.021280 TCAGCCTGCAAATTTGATGCTAAA 60.021 37.500 22.31 12.68 44.14 1.85
3592 4209 0.599991 ACTGCGACGAATGTGCTGAA 60.600 50.000 0.00 0.00 0.00 3.02
3597 4214 3.113322 GCGACGAATGTGCTGAATAGTA 58.887 45.455 0.00 0.00 0.00 1.82
3598 4215 3.180584 GCGACGAATGTGCTGAATAGTAG 59.819 47.826 0.00 0.00 0.00 2.57
3607 4224 2.101415 TGCTGAATAGTAGCGCACTCAT 59.899 45.455 11.47 3.81 44.01 2.90
3686 4332 9.874205 AAATCATACATACCAAAACTTTCATGG 57.126 29.630 0.00 0.00 40.16 3.66
3699 4345 5.171339 ACTTTCATGGCATGACTAGAACT 57.829 39.130 30.58 15.47 39.39 3.01
3701 4347 6.344500 ACTTTCATGGCATGACTAGAACTAG 58.656 40.000 30.58 19.54 39.39 2.57
3735 4385 3.483954 GCCATCAGCAGTGGTACAT 57.516 52.632 0.00 0.00 41.38 2.29
3736 4386 1.019673 GCCATCAGCAGTGGTACATG 58.980 55.000 0.00 0.47 41.38 3.21
3737 4387 1.679944 GCCATCAGCAGTGGTACATGT 60.680 52.381 2.69 2.69 41.38 3.21
3738 4388 2.419990 GCCATCAGCAGTGGTACATGTA 60.420 50.000 0.08 0.08 41.38 2.29
3739 4389 3.872696 CCATCAGCAGTGGTACATGTAA 58.127 45.455 7.25 0.00 44.52 2.41
3740 4390 3.873361 CCATCAGCAGTGGTACATGTAAG 59.127 47.826 7.25 0.00 44.52 2.34
3741 4391 4.383010 CCATCAGCAGTGGTACATGTAAGA 60.383 45.833 7.25 0.00 44.52 2.10
3742 4392 4.188247 TCAGCAGTGGTACATGTAAGAC 57.812 45.455 7.25 7.24 44.52 3.01
3743 4393 3.832490 TCAGCAGTGGTACATGTAAGACT 59.168 43.478 7.25 9.45 44.52 3.24
3744 4394 3.928992 CAGCAGTGGTACATGTAAGACTG 59.071 47.826 26.86 26.86 44.52 3.51
3745 4395 3.832490 AGCAGTGGTACATGTAAGACTGA 59.168 43.478 31.40 4.30 44.52 3.41
3746 4396 4.283467 AGCAGTGGTACATGTAAGACTGAA 59.717 41.667 31.40 3.65 44.52 3.02
3747 4397 4.994852 GCAGTGGTACATGTAAGACTGAAA 59.005 41.667 31.40 3.00 44.52 2.69
3748 4398 5.107065 GCAGTGGTACATGTAAGACTGAAAC 60.107 44.000 31.40 19.01 44.52 2.78
3749 4399 5.989168 CAGTGGTACATGTAAGACTGAAACA 59.011 40.000 27.02 7.06 44.52 2.83
3750 4400 5.989777 AGTGGTACATGTAAGACTGAAACAC 59.010 40.000 7.25 4.04 44.52 3.32
3751 4401 5.756347 GTGGTACATGTAAGACTGAAACACA 59.244 40.000 7.25 0.00 44.52 3.72
3752 4402 6.426937 GTGGTACATGTAAGACTGAAACACAT 59.573 38.462 7.25 0.00 44.52 3.21
3753 4403 6.649141 TGGTACATGTAAGACTGAAACACATC 59.351 38.462 7.25 0.00 0.00 3.06
3754 4404 6.649141 GGTACATGTAAGACTGAAACACATCA 59.351 38.462 7.25 0.00 0.00 3.07
3755 4405 7.334421 GGTACATGTAAGACTGAAACACATCAT 59.666 37.037 7.25 0.00 0.00 2.45
3756 4406 7.750229 ACATGTAAGACTGAAACACATCATT 57.250 32.000 0.00 0.00 0.00 2.57
3757 4407 7.810658 ACATGTAAGACTGAAACACATCATTC 58.189 34.615 0.00 0.00 31.24 2.67
3788 4438 4.484236 CAGCAAGACAGAGTAAGACTGAG 58.516 47.826 0.00 0.00 38.55 3.35
3797 4447 7.668052 AGACAGAGTAAGACTGAGATAACTGTT 59.332 37.037 0.00 0.00 38.55 3.16
3811 4461 8.668353 TGAGATAACTGTTAAATCAAGCATCAC 58.332 33.333 4.11 0.00 0.00 3.06
3818 4468 8.677300 ACTGTTAAATCAAGCATCACGATTATT 58.323 29.630 0.00 0.00 0.00 1.40
3819 4469 8.839947 TGTTAAATCAAGCATCACGATTATTG 57.160 30.769 0.00 0.00 0.00 1.90
3820 4470 7.431960 TGTTAAATCAAGCATCACGATTATTGC 59.568 33.333 0.00 0.00 35.34 3.56
3821 4471 5.762825 AATCAAGCATCACGATTATTGCT 57.237 34.783 0.00 0.00 46.85 3.91
3829 4479 8.153479 AGCATCACGATTATTGCTTAAATACA 57.847 30.769 0.00 0.00 42.52 2.29
3830 4480 8.786898 AGCATCACGATTATTGCTTAAATACAT 58.213 29.630 0.00 0.00 42.52 2.29
3831 4481 9.055248 GCATCACGATTATTGCTTAAATACATC 57.945 33.333 0.00 0.00 30.21 3.06
3837 4487 9.265938 CGATTATTGCTTAAATACATCATTCCG 57.734 33.333 0.00 0.00 30.21 4.30
3838 4488 9.559958 GATTATTGCTTAAATACATCATTCCGG 57.440 33.333 0.00 0.00 30.21 5.14
3839 4489 8.684386 TTATTGCTTAAATACATCATTCCGGA 57.316 30.769 0.00 0.00 30.21 5.14
3840 4490 7.581213 ATTGCTTAAATACATCATTCCGGAA 57.419 32.000 21.37 21.37 0.00 4.30
3841 4491 6.371809 TGCTTAAATACATCATTCCGGAAC 57.628 37.500 21.56 1.57 0.00 3.62
3842 4492 5.883115 TGCTTAAATACATCATTCCGGAACA 59.117 36.000 21.56 9.85 0.00 3.18
3843 4493 6.038161 TGCTTAAATACATCATTCCGGAACAG 59.962 38.462 21.56 15.57 0.00 3.16
3844 4494 6.260050 GCTTAAATACATCATTCCGGAACAGA 59.740 38.462 21.56 20.55 0.00 3.41
3845 4495 7.041098 GCTTAAATACATCATTCCGGAACAGAT 60.041 37.037 21.56 21.87 0.00 2.90
3846 4496 6.624352 AAATACATCATTCCGGAACAGATG 57.376 37.500 36.28 36.28 39.78 2.90
3847 4497 3.912496 ACATCATTCCGGAACAGATGA 57.088 42.857 40.42 31.42 37.90 2.92
3848 4498 4.220693 ACATCATTCCGGAACAGATGAA 57.779 40.909 40.42 20.92 37.90 2.57
3849 4499 4.194640 ACATCATTCCGGAACAGATGAAG 58.805 43.478 40.42 29.69 37.90 3.02
3850 4500 3.981071 TCATTCCGGAACAGATGAAGT 57.019 42.857 21.56 0.00 0.00 3.01
3851 4501 4.286297 TCATTCCGGAACAGATGAAGTT 57.714 40.909 21.56 0.00 0.00 2.66
3852 4502 5.414789 TCATTCCGGAACAGATGAAGTTA 57.585 39.130 21.56 0.00 0.00 2.24
3853 4503 5.800296 TCATTCCGGAACAGATGAAGTTAA 58.200 37.500 21.56 0.00 0.00 2.01
3854 4504 6.234920 TCATTCCGGAACAGATGAAGTTAAA 58.765 36.000 21.56 0.00 0.00 1.52
3855 4505 6.712998 TCATTCCGGAACAGATGAAGTTAAAA 59.287 34.615 21.56 0.00 0.00 1.52
3856 4506 5.934935 TCCGGAACAGATGAAGTTAAAAC 57.065 39.130 0.00 0.00 0.00 2.43
3857 4507 5.369833 TCCGGAACAGATGAAGTTAAAACA 58.630 37.500 0.00 0.00 0.00 2.83
3858 4508 5.468746 TCCGGAACAGATGAAGTTAAAACAG 59.531 40.000 0.00 0.00 0.00 3.16
3859 4509 5.468746 CCGGAACAGATGAAGTTAAAACAGA 59.531 40.000 0.00 0.00 0.00 3.41
3860 4510 6.363473 CGGAACAGATGAAGTTAAAACAGAC 58.637 40.000 0.00 0.00 0.00 3.51
3861 4511 6.565999 CGGAACAGATGAAGTTAAAACAGACC 60.566 42.308 0.00 0.00 0.00 3.85
3862 4512 5.924475 ACAGATGAAGTTAAAACAGACCG 57.076 39.130 0.00 0.00 0.00 4.79
3863 4513 5.365619 ACAGATGAAGTTAAAACAGACCGT 58.634 37.500 0.00 0.00 0.00 4.83
3864 4514 5.820947 ACAGATGAAGTTAAAACAGACCGTT 59.179 36.000 0.00 0.00 40.50 4.44
3865 4515 6.987992 ACAGATGAAGTTAAAACAGACCGTTA 59.012 34.615 0.00 0.00 36.59 3.18
3866 4516 7.660208 ACAGATGAAGTTAAAACAGACCGTTAT 59.340 33.333 0.00 0.00 36.59 1.89
3867 4517 9.146984 CAGATGAAGTTAAAACAGACCGTTATA 57.853 33.333 0.00 0.00 36.59 0.98
3868 4518 9.886132 AGATGAAGTTAAAACAGACCGTTATAT 57.114 29.630 0.00 0.00 36.59 0.86
3869 4519 9.916397 GATGAAGTTAAAACAGACCGTTATATG 57.084 33.333 0.00 0.00 36.59 1.78
3870 4520 9.661563 ATGAAGTTAAAACAGACCGTTATATGA 57.338 29.630 0.00 0.00 36.59 2.15
3871 4521 9.491675 TGAAGTTAAAACAGACCGTTATATGAA 57.508 29.630 0.00 0.00 36.59 2.57
3874 4524 9.275398 AGTTAAAACAGACCGTTATATGAAACA 57.725 29.630 0.00 0.00 36.59 2.83
3875 4525 9.881529 GTTAAAACAGACCGTTATATGAAACAA 57.118 29.630 0.00 0.00 36.59 2.83
3877 4527 5.796350 ACAGACCGTTATATGAAACAAGC 57.204 39.130 0.00 0.00 0.00 4.01
3878 4528 5.242434 ACAGACCGTTATATGAAACAAGCA 58.758 37.500 0.00 0.00 0.00 3.91
3879 4529 5.880332 ACAGACCGTTATATGAAACAAGCAT 59.120 36.000 0.00 0.00 0.00 3.79
3880 4530 6.037172 ACAGACCGTTATATGAAACAAGCATC 59.963 38.462 0.00 0.00 0.00 3.91
3881 4531 6.037062 CAGACCGTTATATGAAACAAGCATCA 59.963 38.462 0.00 0.00 0.00 3.07
3882 4532 6.597672 AGACCGTTATATGAAACAAGCATCAA 59.402 34.615 0.00 0.00 0.00 2.57
3883 4533 6.785191 ACCGTTATATGAAACAAGCATCAAG 58.215 36.000 0.00 0.00 0.00 3.02
3884 4534 6.597672 ACCGTTATATGAAACAAGCATCAAGA 59.402 34.615 0.00 0.00 0.00 3.02
3885 4535 7.128331 CCGTTATATGAAACAAGCATCAAGAG 58.872 38.462 0.00 0.00 0.00 2.85
3886 4536 6.630443 CGTTATATGAAACAAGCATCAAGAGC 59.370 38.462 0.00 0.00 0.00 4.09
3887 4537 2.975410 TGAAACAAGCATCAAGAGCG 57.025 45.000 0.00 0.00 37.01 5.03
3888 4538 2.493035 TGAAACAAGCATCAAGAGCGA 58.507 42.857 0.00 0.00 37.01 4.93
3889 4539 2.877786 TGAAACAAGCATCAAGAGCGAA 59.122 40.909 0.00 0.00 37.01 4.70
3890 4540 3.503363 TGAAACAAGCATCAAGAGCGAAT 59.497 39.130 0.00 0.00 37.01 3.34
3891 4541 4.022935 TGAAACAAGCATCAAGAGCGAATT 60.023 37.500 0.00 0.00 37.01 2.17
3892 4542 5.181056 TGAAACAAGCATCAAGAGCGAATTA 59.819 36.000 0.00 0.00 37.01 1.40
3893 4543 5.627499 AACAAGCATCAAGAGCGAATTAA 57.373 34.783 0.00 0.00 37.01 1.40
3894 4544 4.974591 ACAAGCATCAAGAGCGAATTAAC 58.025 39.130 0.00 0.00 37.01 2.01
3895 4545 3.933155 AGCATCAAGAGCGAATTAACG 57.067 42.857 0.00 0.00 37.01 3.18
3896 4546 2.609459 AGCATCAAGAGCGAATTAACGG 59.391 45.455 0.00 0.00 37.01 4.44
3897 4547 2.351726 GCATCAAGAGCGAATTAACGGT 59.648 45.455 0.00 0.00 46.35 4.83
3898 4548 3.554324 GCATCAAGAGCGAATTAACGGTA 59.446 43.478 0.00 0.00 43.81 4.02
3899 4549 4.033587 GCATCAAGAGCGAATTAACGGTAA 59.966 41.667 0.00 0.00 43.81 2.85
3900 4550 5.446741 GCATCAAGAGCGAATTAACGGTAAA 60.447 40.000 0.00 0.00 43.81 2.01
3901 4551 6.539324 CATCAAGAGCGAATTAACGGTAAAA 58.461 36.000 0.00 0.00 43.81 1.52
3902 4552 6.542574 TCAAGAGCGAATTAACGGTAAAAA 57.457 33.333 0.00 0.00 43.81 1.94
3903 4553 7.136289 TCAAGAGCGAATTAACGGTAAAAAT 57.864 32.000 0.00 0.00 43.81 1.82
3904 4554 7.238571 TCAAGAGCGAATTAACGGTAAAAATC 58.761 34.615 0.00 0.00 43.81 2.17
3905 4555 6.730960 AGAGCGAATTAACGGTAAAAATCA 57.269 33.333 0.00 0.00 43.81 2.57
3906 4556 7.136289 AGAGCGAATTAACGGTAAAAATCAA 57.864 32.000 0.00 0.00 43.81 2.57
3907 4557 7.586747 AGAGCGAATTAACGGTAAAAATCAAA 58.413 30.769 0.00 0.00 43.81 2.69
3908 4558 7.536281 AGAGCGAATTAACGGTAAAAATCAAAC 59.464 33.333 0.00 0.00 43.81 2.93
3909 4559 6.303733 AGCGAATTAACGGTAAAAATCAAACG 59.696 34.615 0.00 0.00 42.05 3.60
3910 4560 6.443754 CGAATTAACGGTAAAAATCAAACGC 58.556 36.000 0.00 0.00 0.00 4.84
3911 4561 6.086502 CGAATTAACGGTAAAAATCAAACGCA 59.913 34.615 0.00 0.00 0.00 5.24
3912 4562 6.678540 ATTAACGGTAAAAATCAAACGCAC 57.321 33.333 0.00 0.00 0.00 5.34
3913 4563 3.974871 ACGGTAAAAATCAAACGCACT 57.025 38.095 0.00 0.00 0.00 4.40
3914 4564 5.421212 AACGGTAAAAATCAAACGCACTA 57.579 34.783 0.00 0.00 0.00 2.74
3915 4565 5.616488 ACGGTAAAAATCAAACGCACTAT 57.384 34.783 0.00 0.00 0.00 2.12
3916 4566 6.004408 ACGGTAAAAATCAAACGCACTATT 57.996 33.333 0.00 0.00 0.00 1.73
3917 4567 5.854338 ACGGTAAAAATCAAACGCACTATTG 59.146 36.000 0.00 0.00 0.00 1.90
3918 4568 5.854338 CGGTAAAAATCAAACGCACTATTGT 59.146 36.000 0.00 0.00 0.00 2.71
3919 4569 6.183359 CGGTAAAAATCAAACGCACTATTGTG 60.183 38.462 2.65 2.65 46.37 3.33
3928 4578 3.708195 CACTATTGTGCAAGCAGCC 57.292 52.632 0.00 0.00 44.83 4.85
3929 4579 0.171903 CACTATTGTGCAAGCAGCCC 59.828 55.000 0.00 0.00 44.83 5.19
3930 4580 1.308069 ACTATTGTGCAAGCAGCCCG 61.308 55.000 0.00 0.00 44.83 6.13
3931 4581 2.603135 CTATTGTGCAAGCAGCCCGC 62.603 60.000 0.00 0.00 44.83 6.13
3937 4587 2.985282 CAAGCAGCCCGCCTGAAA 60.985 61.111 5.61 0.00 44.64 2.69
3938 4588 2.674380 AAGCAGCCCGCCTGAAAG 60.674 61.111 5.61 0.00 44.64 2.62
3939 4589 3.196207 AAGCAGCCCGCCTGAAAGA 62.196 57.895 5.61 0.00 44.64 2.52
3940 4590 2.672996 GCAGCCCGCCTGAAAGAA 60.673 61.111 5.61 0.00 44.64 2.52
3941 4591 2.694760 GCAGCCCGCCTGAAAGAAG 61.695 63.158 5.61 0.00 44.64 2.85
3942 4592 1.003355 CAGCCCGCCTGAAAGAAGA 60.003 57.895 0.00 0.00 44.64 2.87
3943 4593 1.003233 AGCCCGCCTGAAAGAAGAC 60.003 57.895 0.00 0.00 34.07 3.01
3944 4594 1.003233 GCCCGCCTGAAAGAAGACT 60.003 57.895 0.00 0.00 34.07 3.24
3945 4595 0.606673 GCCCGCCTGAAAGAAGACTT 60.607 55.000 0.00 0.00 38.05 3.01
3946 4596 1.443802 CCCGCCTGAAAGAAGACTTC 58.556 55.000 7.14 7.14 35.05 3.01
3947 4597 1.071605 CCGCCTGAAAGAAGACTTCG 58.928 55.000 9.53 0.00 35.05 3.79
3948 4598 0.440371 CGCCTGAAAGAAGACTTCGC 59.560 55.000 9.53 5.18 35.05 4.70
3949 4599 1.802069 GCCTGAAAGAAGACTTCGCT 58.198 50.000 9.53 0.86 35.05 4.93
3950 4600 2.147150 GCCTGAAAGAAGACTTCGCTT 58.853 47.619 9.53 7.33 35.05 4.68
3951 4601 2.158645 GCCTGAAAGAAGACTTCGCTTC 59.841 50.000 18.77 18.77 43.57 3.86
3952 4602 3.393800 CCTGAAAGAAGACTTCGCTTCA 58.606 45.455 23.29 23.29 45.21 3.02
3953 4603 3.431572 CCTGAAAGAAGACTTCGCTTCAG 59.568 47.826 31.65 31.65 45.21 3.02
3954 4604 4.302455 CTGAAAGAAGACTTCGCTTCAGA 58.698 43.478 33.22 17.26 46.30 3.27
3955 4605 4.302455 TGAAAGAAGACTTCGCTTCAGAG 58.698 43.478 22.01 0.00 45.21 3.35
3956 4606 4.038042 TGAAAGAAGACTTCGCTTCAGAGA 59.962 41.667 22.01 8.29 45.21 3.10
3957 4607 4.799564 AAGAAGACTTCGCTTCAGAGAT 57.200 40.909 9.53 0.00 45.21 2.75
3958 4608 5.906113 AAGAAGACTTCGCTTCAGAGATA 57.094 39.130 9.53 0.00 45.21 1.98
3959 4609 5.243426 AGAAGACTTCGCTTCAGAGATAC 57.757 43.478 9.53 0.00 45.21 2.24
3960 4610 4.702612 AGAAGACTTCGCTTCAGAGATACA 59.297 41.667 9.53 0.00 45.21 2.29
3961 4611 4.630894 AGACTTCGCTTCAGAGATACAG 57.369 45.455 0.00 0.00 0.00 2.74
3962 4612 4.265893 AGACTTCGCTTCAGAGATACAGA 58.734 43.478 0.00 0.00 0.00 3.41
3963 4613 4.887071 AGACTTCGCTTCAGAGATACAGAT 59.113 41.667 0.00 0.00 0.00 2.90
3964 4614 4.930963 ACTTCGCTTCAGAGATACAGATG 58.069 43.478 0.00 0.00 0.00 2.90
3965 4615 3.361794 TCGCTTCAGAGATACAGATGC 57.638 47.619 0.00 0.00 33.92 3.91
3966 4616 2.689983 TCGCTTCAGAGATACAGATGCA 59.310 45.455 0.00 0.00 35.85 3.96
3967 4617 3.051327 CGCTTCAGAGATACAGATGCAG 58.949 50.000 0.00 0.00 35.85 4.41
3968 4618 3.243334 CGCTTCAGAGATACAGATGCAGA 60.243 47.826 0.00 0.00 35.85 4.26
3969 4619 4.691175 GCTTCAGAGATACAGATGCAGAA 58.309 43.478 0.00 0.00 36.03 3.02
3970 4620 5.114780 GCTTCAGAGATACAGATGCAGAAA 58.885 41.667 0.00 0.00 36.03 2.52
3971 4621 5.759273 GCTTCAGAGATACAGATGCAGAAAT 59.241 40.000 0.00 0.00 36.03 2.17
3972 4622 6.073657 GCTTCAGAGATACAGATGCAGAAATC 60.074 42.308 0.00 0.00 36.03 2.17
3973 4623 5.851720 TCAGAGATACAGATGCAGAAATCC 58.148 41.667 0.00 0.00 0.00 3.01
3974 4624 5.601729 TCAGAGATACAGATGCAGAAATCCT 59.398 40.000 0.00 0.00 0.00 3.24
3975 4625 5.697178 CAGAGATACAGATGCAGAAATCCTG 59.303 44.000 0.00 0.00 45.67 3.86
3987 4637 5.640189 CAGAAATCCTGCAAGACATTCTT 57.360 39.130 10.88 0.00 35.89 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 53 9.509855 GTGTAACTTGTGTTCACATTTGATTTA 57.490 29.630 6.47 0.00 37.59 1.40
95 96 5.428496 ACATCACAAATTGAGTCACACAG 57.572 39.130 0.00 0.00 37.77 3.66
101 102 7.915397 AGTTGTACAAACATCACAAATTGAGTC 59.085 33.333 10.51 0.00 37.77 3.36
244 521 7.275560 CCCAATTGTCGAGATTTTATTTTGACC 59.724 37.037 4.43 0.00 0.00 4.02
251 528 5.067805 GCTTCCCCAATTGTCGAGATTTTAT 59.932 40.000 4.43 0.00 0.00 1.40
266 543 1.216678 TCCAGTTCAAAGCTTCCCCAA 59.783 47.619 0.00 0.00 0.00 4.12
304 581 4.911610 TCCGTCTTAGTTTTCGTACGAAAG 59.088 41.667 34.17 25.47 43.75 2.62
324 601 4.073293 AGAATGGGTAGCAACTTATCCG 57.927 45.455 0.00 0.00 0.00 4.18
361 638 0.163788 CCTAGCAAACGTTCACTGCG 59.836 55.000 15.62 4.99 41.05 5.18
370 647 0.815615 GCCATCCCTCCTAGCAAACG 60.816 60.000 0.00 0.00 0.00 3.60
434 755 9.413048 TCAAACAACGACAGTTTTTAGAAAAAT 57.587 25.926 3.64 0.00 39.75 1.82
452 773 0.516524 GCGACGCGAGATCAAACAAC 60.517 55.000 15.93 0.00 0.00 3.32
453 774 0.941936 TGCGACGCGAGATCAAACAA 60.942 50.000 15.93 0.00 0.00 2.83
471 792 8.633075 ACACATTTTGATGACAGTTTTAGTTG 57.367 30.769 0.00 0.00 0.00 3.16
513 834 1.280133 CTGGCTGACATTCTCTGGGAA 59.720 52.381 0.00 0.00 38.41 3.97
524 845 3.270027 CGGAATTGTTATCTGGCTGACA 58.730 45.455 0.00 0.00 0.00 3.58
597 921 7.338800 ACTGTTTTGACAATCTGAGTGAAAT 57.661 32.000 12.54 0.00 0.00 2.17
606 930 7.217200 TCTTAGCACTACTGTTTTGACAATCT 58.783 34.615 0.00 0.00 0.00 2.40
611 935 7.602517 ATGATCTTAGCACTACTGTTTTGAC 57.397 36.000 0.00 0.00 0.00 3.18
613 937 7.613146 CGTATGATCTTAGCACTACTGTTTTG 58.387 38.462 0.00 0.00 0.00 2.44
614 938 6.255887 GCGTATGATCTTAGCACTACTGTTTT 59.744 38.462 0.00 0.00 0.00 2.43
625 949 2.135933 GTGGGTGCGTATGATCTTAGC 58.864 52.381 0.00 0.00 0.00 3.09
626 950 3.452755 TGTGGGTGCGTATGATCTTAG 57.547 47.619 0.00 0.00 0.00 2.18
627 951 3.897141 TTGTGGGTGCGTATGATCTTA 57.103 42.857 0.00 0.00 0.00 2.10
628 952 2.779755 TTGTGGGTGCGTATGATCTT 57.220 45.000 0.00 0.00 0.00 2.40
640 964 4.907269 AGGAAATGGAAAAGAATTGTGGGT 59.093 37.500 0.00 0.00 0.00 4.51
656 980 1.613437 GGTGGTTGGTGTGAGGAAATG 59.387 52.381 0.00 0.00 0.00 2.32
661 986 0.324943 CCTAGGTGGTTGGTGTGAGG 59.675 60.000 0.00 0.00 0.00 3.86
709 1034 4.106925 CTCCACAGCTGGGAGCCC 62.107 72.222 27.73 0.00 44.95 5.19
713 1038 1.610673 GAGTCCTCCACAGCTGGGA 60.611 63.158 20.22 19.54 38.25 4.37
714 1039 2.985456 GAGTCCTCCACAGCTGGG 59.015 66.667 19.93 15.23 38.25 4.45
718 1043 0.390472 CTTTCCGAGTCCTCCACAGC 60.390 60.000 0.00 0.00 0.00 4.40
722 1047 1.103803 CGATCTTTCCGAGTCCTCCA 58.896 55.000 0.00 0.00 0.00 3.86
747 1072 1.452108 GGAATTGCCCCTCGTCCAG 60.452 63.158 0.00 0.00 0.00 3.86
752 1077 0.748005 ATTGACGGAATTGCCCCTCG 60.748 55.000 0.00 0.00 0.00 4.63
774 1099 0.390735 TCGCCCTTTACTCTTTCCGC 60.391 55.000 0.00 0.00 0.00 5.54
776 1101 2.028385 TGTCTCGCCCTTTACTCTTTCC 60.028 50.000 0.00 0.00 0.00 3.13
923 1262 2.084546 GAGGGAAGGTCGTGGAATTTG 58.915 52.381 0.00 0.00 0.00 2.32
926 1265 1.272554 GGGAGGGAAGGTCGTGGAAT 61.273 60.000 0.00 0.00 0.00 3.01
930 1269 2.284699 AGGGGAGGGAAGGTCGTG 60.285 66.667 0.00 0.00 0.00 4.35
931 1270 2.039137 GAGGGGAGGGAAGGTCGT 59.961 66.667 0.00 0.00 0.00 4.34
932 1271 2.764547 GGAGGGGAGGGAAGGTCG 60.765 72.222 0.00 0.00 0.00 4.79
933 1272 2.367107 GGGAGGGGAGGGAAGGTC 60.367 72.222 0.00 0.00 0.00 3.85
934 1273 4.040198 GGGGAGGGGAGGGAAGGT 62.040 72.222 0.00 0.00 0.00 3.50
935 1274 4.845307 GGGGGAGGGGAGGGAAGG 62.845 77.778 0.00 0.00 0.00 3.46
936 1275 3.596459 TTGGGGGAGGGGAGGGAAG 62.596 68.421 0.00 0.00 0.00 3.46
937 1276 2.461837 ATTTGGGGGAGGGGAGGGAA 62.462 60.000 0.00 0.00 0.00 3.97
941 1280 0.936691 ATTGATTTGGGGGAGGGGAG 59.063 55.000 0.00 0.00 0.00 4.30
942 1281 0.933700 GATTGATTTGGGGGAGGGGA 59.066 55.000 0.00 0.00 0.00 4.81
946 1285 2.692041 GAGCTTGATTGATTTGGGGGAG 59.308 50.000 0.00 0.00 0.00 4.30
947 1286 2.624029 GGAGCTTGATTGATTTGGGGGA 60.624 50.000 0.00 0.00 0.00 4.81
948 1287 1.758862 GGAGCTTGATTGATTTGGGGG 59.241 52.381 0.00 0.00 0.00 5.40
949 1288 1.406539 CGGAGCTTGATTGATTTGGGG 59.593 52.381 0.00 0.00 0.00 4.96
950 1289 1.406539 CCGGAGCTTGATTGATTTGGG 59.593 52.381 0.00 0.00 0.00 4.12
951 1290 1.202336 GCCGGAGCTTGATTGATTTGG 60.202 52.381 5.05 0.00 35.50 3.28
952 1291 2.199291 GCCGGAGCTTGATTGATTTG 57.801 50.000 5.05 0.00 35.50 2.32
990 1329 3.151710 CCCGCCATCCTCACGGTA 61.152 66.667 0.00 0.00 45.49 4.02
1182 1525 1.977009 CAAAGGGAAGCCGGGGAAC 60.977 63.158 2.18 0.00 0.00 3.62
1183 1526 2.438795 CAAAGGGAAGCCGGGGAA 59.561 61.111 2.18 0.00 0.00 3.97
1184 1527 4.360405 GCAAAGGGAAGCCGGGGA 62.360 66.667 2.18 0.00 0.00 4.81
1265 1622 0.393820 ACCTTCGCCCTAAACGACAA 59.606 50.000 0.00 0.00 39.67 3.18
1278 1635 2.835027 GGGCTAAAGACCATACCTTCG 58.165 52.381 0.00 0.00 44.76 3.79
1324 1681 0.251341 AAGCACCCTAAAGCCCACAG 60.251 55.000 0.00 0.00 0.00 3.66
1380 1737 0.537828 TTCATGAGCTGTGCTGGCAA 60.538 50.000 0.00 0.00 39.88 4.52
1381 1738 0.323087 ATTCATGAGCTGTGCTGGCA 60.323 50.000 0.00 0.00 39.88 4.92
1382 1745 0.381089 GATTCATGAGCTGTGCTGGC 59.619 55.000 0.00 0.00 39.88 4.85
1384 1747 1.366679 ACGATTCATGAGCTGTGCTG 58.633 50.000 0.00 0.00 39.88 4.41
1447 1811 4.196971 ACCCCTTACAGCGCTAAATTTAG 58.803 43.478 19.08 19.08 0.00 1.85
1474 1838 4.154918 CAGTCAAGGCAGTAAACTGGATTC 59.845 45.833 11.86 0.00 43.94 2.52
1489 1853 4.616835 GCAGCTTAACCAATTCAGTCAAGG 60.617 45.833 0.00 0.00 0.00 3.61
1505 1869 1.303561 CACTTGGCCTGGCAGCTTA 60.304 57.895 22.05 0.00 0.00 3.09
1533 1897 3.703001 TTTGGGAAAGCAACAACCAAA 57.297 38.095 0.00 0.00 45.82 3.28
1595 1959 4.887748 AGTCCATCGGAAATGCTATGTAG 58.112 43.478 0.00 0.00 31.38 2.74
1596 1960 4.955811 AGTCCATCGGAAATGCTATGTA 57.044 40.909 0.00 0.00 31.38 2.29
1597 1961 3.845781 AGTCCATCGGAAATGCTATGT 57.154 42.857 0.00 0.00 31.38 2.29
1598 1962 4.687948 CACTAGTCCATCGGAAATGCTATG 59.312 45.833 0.00 0.00 31.38 2.23
1599 1963 4.588951 TCACTAGTCCATCGGAAATGCTAT 59.411 41.667 0.00 0.00 31.38 2.97
1600 1964 3.958147 TCACTAGTCCATCGGAAATGCTA 59.042 43.478 0.00 0.00 31.38 3.49
1601 1965 2.766263 TCACTAGTCCATCGGAAATGCT 59.234 45.455 0.00 0.00 31.38 3.79
1630 1994 1.974265 TTCGCAAGTCCATGGTTCAA 58.026 45.000 12.58 0.00 39.48 2.69
1632 1996 3.575965 AATTTCGCAAGTCCATGGTTC 57.424 42.857 12.58 6.61 39.48 3.62
1679 2043 3.058639 CAGGCTTCACAAAAGTGCTAGAC 60.059 47.826 0.00 0.00 0.00 2.59
1777 2141 9.911788 ATACTTGACTACTCAATGGAATTTCAT 57.088 29.630 0.00 0.00 35.78 2.57
1869 2238 5.640189 ACTACAGTATGCTTCGTAACAGT 57.360 39.130 0.00 0.00 42.53 3.55
1897 2266 0.941542 TGTTTTAGTCGCCTGCACAC 59.058 50.000 0.00 0.00 0.00 3.82
1902 2271 2.032030 CCACTGTTGTTTTAGTCGCCTG 60.032 50.000 0.00 0.00 0.00 4.85
1903 2272 2.218603 CCACTGTTGTTTTAGTCGCCT 58.781 47.619 0.00 0.00 0.00 5.52
1925 2294 9.871238 GGAGTACTTATTTCAGAGAAATACACA 57.129 33.333 10.73 0.00 0.00 3.72
1987 2357 6.265196 AGAAAATTCAGTGTTGCTAACCATGA 59.735 34.615 0.00 0.00 0.00 3.07
2021 2391 7.331440 CACTCTTCTGCAGCCTATAAGATTATG 59.669 40.741 9.47 7.58 0.00 1.90
2190 2560 2.762887 TCAGTCGAGCATGAAGATTCCT 59.237 45.455 0.00 0.00 0.00 3.36
2204 2574 0.315251 CCAGCTGTGTCTTCAGTCGA 59.685 55.000 13.81 0.00 37.70 4.20
2313 2693 7.174946 TGCTTTCGAATTATTGAAGGGATATCC 59.825 37.037 13.87 13.87 30.61 2.59
2336 2716 4.655963 TGCTCTGTTCCTTAAATCTTGCT 58.344 39.130 0.00 0.00 0.00 3.91
2356 2736 4.990426 ACATTCTAAACAACAAAGCCATGC 59.010 37.500 0.00 0.00 0.00 4.06
2421 2828 5.106038 TGTTTGAGCATCCAAGAGCATAAAG 60.106 40.000 0.00 0.00 0.00 1.85
2524 2931 3.768757 ACTCCTCTTCAGACTCTGGAATG 59.231 47.826 6.20 0.00 31.51 2.67
2653 3060 7.871853 TCAGAGCTTTTGTTACAGGTTTATTC 58.128 34.615 0.00 0.00 0.00 1.75
2762 3169 3.304458 GCTTCCGTTAAAGGTTCCTTGTG 60.304 47.826 7.34 0.00 0.00 3.33
2929 3336 0.250513 ACCGAGGCAAGTCATCTTCC 59.749 55.000 0.00 0.00 0.00 3.46
3050 3459 4.469945 CAGATGGGACCAAAGTTAGTAGGA 59.530 45.833 0.00 0.00 0.00 2.94
3277 3857 2.633481 AGACTTGTTTCCTCGGCTAAGT 59.367 45.455 0.00 0.00 0.00 2.24
3416 3996 8.026607 CAGAGACTGCTAGGCTATAAAATCTAC 58.973 40.741 0.00 0.00 30.20 2.59
3489 4069 2.290514 TGAGAAAGATGTCTTGGGGCAG 60.291 50.000 0.00 0.00 36.12 4.85
3490 4070 1.704628 TGAGAAAGATGTCTTGGGGCA 59.295 47.619 0.00 0.00 36.12 5.36
3491 4071 2.087646 GTGAGAAAGATGTCTTGGGGC 58.912 52.381 0.00 0.00 36.12 5.80
3492 4072 3.423539 TGTGAGAAAGATGTCTTGGGG 57.576 47.619 0.00 0.00 36.12 4.96
3493 4073 5.972107 AATTGTGAGAAAGATGTCTTGGG 57.028 39.130 0.00 0.00 36.12 4.12
3494 4074 6.973843 TGAAATTGTGAGAAAGATGTCTTGG 58.026 36.000 0.00 0.00 36.12 3.61
3495 4075 6.581542 GCTGAAATTGTGAGAAAGATGTCTTG 59.418 38.462 0.00 0.00 36.12 3.02
3496 4076 6.294397 GGCTGAAATTGTGAGAAAGATGTCTT 60.294 38.462 0.00 0.00 37.91 3.01
3497 4077 5.182760 GGCTGAAATTGTGAGAAAGATGTCT 59.817 40.000 0.00 0.00 0.00 3.41
3498 4078 5.182760 AGGCTGAAATTGTGAGAAAGATGTC 59.817 40.000 0.00 0.00 0.00 3.06
3499 4079 5.048224 CAGGCTGAAATTGTGAGAAAGATGT 60.048 40.000 9.42 0.00 0.00 3.06
3500 4080 5.399858 CAGGCTGAAATTGTGAGAAAGATG 58.600 41.667 9.42 0.00 0.00 2.90
3501 4081 4.082354 GCAGGCTGAAATTGTGAGAAAGAT 60.082 41.667 20.86 0.00 0.00 2.40
3502 4082 3.254166 GCAGGCTGAAATTGTGAGAAAGA 59.746 43.478 20.86 0.00 0.00 2.52
3503 4083 3.005050 TGCAGGCTGAAATTGTGAGAAAG 59.995 43.478 20.86 0.00 0.00 2.62
3504 4084 2.957680 TGCAGGCTGAAATTGTGAGAAA 59.042 40.909 20.86 0.00 0.00 2.52
3505 4085 2.585330 TGCAGGCTGAAATTGTGAGAA 58.415 42.857 20.86 0.00 0.00 2.87
3506 4086 2.275134 TGCAGGCTGAAATTGTGAGA 57.725 45.000 20.86 0.00 0.00 3.27
3507 4087 3.374220 TTTGCAGGCTGAAATTGTGAG 57.626 42.857 20.86 0.00 0.00 3.51
3508 4088 4.339872 AATTTGCAGGCTGAAATTGTGA 57.660 36.364 24.09 7.64 31.93 3.58
3509 4089 4.512198 TCAAATTTGCAGGCTGAAATTGTG 59.488 37.500 24.80 19.52 33.16 3.33
3510 4090 4.706035 TCAAATTTGCAGGCTGAAATTGT 58.294 34.783 24.80 11.15 33.16 2.71
3511 4091 5.627172 CATCAAATTTGCAGGCTGAAATTG 58.373 37.500 24.80 19.90 33.16 2.32
3512 4092 4.155280 GCATCAAATTTGCAGGCTGAAATT 59.845 37.500 20.86 21.25 39.90 1.82
3513 4093 3.687698 GCATCAAATTTGCAGGCTGAAAT 59.312 39.130 20.86 17.05 39.90 2.17
3514 4094 3.068560 GCATCAAATTTGCAGGCTGAAA 58.931 40.909 20.86 12.31 39.90 2.69
3515 4095 2.300723 AGCATCAAATTTGCAGGCTGAA 59.699 40.909 20.86 4.21 42.62 3.02
3516 4096 1.897133 AGCATCAAATTTGCAGGCTGA 59.103 42.857 20.86 0.00 42.62 4.26
3517 4097 2.380084 AGCATCAAATTTGCAGGCTG 57.620 45.000 21.98 10.94 42.62 4.85
3518 4098 4.540359 TTTAGCATCAAATTTGCAGGCT 57.460 36.364 24.30 24.30 42.62 4.58
3519 4099 5.806366 ATTTTAGCATCAAATTTGCAGGC 57.194 34.783 13.54 15.04 42.62 4.85
3520 4100 7.808672 TGAAATTTTAGCATCAAATTTGCAGG 58.191 30.769 13.54 6.29 41.69 4.85
3539 4150 5.745227 AGGAACCAGTACGATCATGAAATT 58.255 37.500 0.00 0.00 0.00 1.82
3580 4197 2.097202 GCGCTACTATTCAGCACATTCG 60.097 50.000 0.00 0.00 39.04 3.34
3592 4209 6.206829 TGATTACAGTATGAGTGCGCTACTAT 59.793 38.462 9.73 0.00 40.53 2.12
3597 4214 3.381590 TCTGATTACAGTATGAGTGCGCT 59.618 43.478 9.73 0.00 43.81 5.92
3598 4215 3.706698 TCTGATTACAGTATGAGTGCGC 58.293 45.455 0.00 0.00 43.81 6.09
3629 4246 7.534723 AATCAAATCATAGCATTAGCATGGT 57.465 32.000 1.62 1.62 45.49 3.55
3730 4380 7.652300 TGATGTGTTTCAGTCTTACATGTAC 57.348 36.000 4.68 0.00 32.58 2.90
3735 4385 6.992123 ACAGAATGATGTGTTTCAGTCTTACA 59.008 34.615 2.01 0.00 45.85 2.41
3736 4386 7.426929 ACAGAATGATGTGTTTCAGTCTTAC 57.573 36.000 2.01 0.00 45.85 2.34
3737 4387 9.208022 CTTACAGAATGATGTGTTTCAGTCTTA 57.792 33.333 2.01 0.00 45.85 2.10
3738 4388 7.933577 TCTTACAGAATGATGTGTTTCAGTCTT 59.066 33.333 2.01 0.00 45.85 3.01
3740 4390 7.623089 GCTCTTACAGAATGATGTGTTTCAGTC 60.623 40.741 0.00 0.00 39.69 3.51
3741 4391 6.148480 GCTCTTACAGAATGATGTGTTTCAGT 59.852 38.462 0.00 0.00 39.69 3.41
3742 4392 6.148315 TGCTCTTACAGAATGATGTGTTTCAG 59.852 38.462 0.00 0.00 39.69 3.02
3743 4393 5.997129 TGCTCTTACAGAATGATGTGTTTCA 59.003 36.000 0.00 0.00 39.69 2.69
3744 4394 6.486253 TGCTCTTACAGAATGATGTGTTTC 57.514 37.500 0.00 0.00 39.69 2.78
3745 4395 5.106396 GCTGCTCTTACAGAATGATGTGTTT 60.106 40.000 0.00 0.00 40.25 2.83
3746 4396 4.394300 GCTGCTCTTACAGAATGATGTGTT 59.606 41.667 0.00 0.00 40.25 3.32
3747 4397 3.937706 GCTGCTCTTACAGAATGATGTGT 59.062 43.478 0.00 0.00 40.25 3.72
3748 4398 3.937079 TGCTGCTCTTACAGAATGATGTG 59.063 43.478 0.00 0.00 40.25 3.21
3749 4399 4.212143 TGCTGCTCTTACAGAATGATGT 57.788 40.909 0.00 0.00 40.25 3.06
3750 4400 4.874396 TCTTGCTGCTCTTACAGAATGATG 59.126 41.667 0.00 0.00 40.25 3.07
3751 4401 4.874966 GTCTTGCTGCTCTTACAGAATGAT 59.125 41.667 0.00 0.00 40.25 2.45
3752 4402 4.248859 GTCTTGCTGCTCTTACAGAATGA 58.751 43.478 0.00 0.00 40.25 2.57
3753 4403 3.999001 TGTCTTGCTGCTCTTACAGAATG 59.001 43.478 0.00 0.00 40.25 2.67
3754 4404 4.020751 TCTGTCTTGCTGCTCTTACAGAAT 60.021 41.667 18.36 0.00 40.10 2.40
3755 4405 3.321968 TCTGTCTTGCTGCTCTTACAGAA 59.678 43.478 18.36 8.16 40.10 3.02
3756 4406 2.893489 TCTGTCTTGCTGCTCTTACAGA 59.107 45.455 17.40 17.40 40.60 3.41
3757 4407 3.252400 CTCTGTCTTGCTGCTCTTACAG 58.748 50.000 14.48 14.48 40.80 2.74
3788 4438 7.684670 TCGTGATGCTTGATTTAACAGTTATC 58.315 34.615 0.00 0.00 0.00 1.75
3797 4447 7.263100 AGCAATAATCGTGATGCTTGATTTA 57.737 32.000 8.17 0.00 46.36 1.40
3811 4461 9.265938 CGGAATGATGTATTTAAGCAATAATCG 57.734 33.333 0.00 0.00 0.00 3.34
3818 4468 5.883115 TGTTCCGGAATGATGTATTTAAGCA 59.117 36.000 22.04 5.18 0.00 3.91
3819 4469 6.260050 TCTGTTCCGGAATGATGTATTTAAGC 59.740 38.462 22.04 2.28 0.00 3.09
3820 4470 7.786178 TCTGTTCCGGAATGATGTATTTAAG 57.214 36.000 22.04 4.30 0.00 1.85
3821 4471 7.990314 TCATCTGTTCCGGAATGATGTATTTAA 59.010 33.333 35.47 24.41 36.48 1.52
3822 4472 7.505258 TCATCTGTTCCGGAATGATGTATTTA 58.495 34.615 35.47 24.84 36.48 1.40
3823 4473 6.356556 TCATCTGTTCCGGAATGATGTATTT 58.643 36.000 35.47 17.57 36.48 1.40
3824 4474 5.928976 TCATCTGTTCCGGAATGATGTATT 58.071 37.500 35.47 18.06 36.48 1.89
3825 4475 5.551305 TCATCTGTTCCGGAATGATGTAT 57.449 39.130 35.47 19.44 36.48 2.29
3826 4476 5.104941 ACTTCATCTGTTCCGGAATGATGTA 60.105 40.000 35.47 30.55 36.48 2.29
3827 4477 3.912496 TCATCTGTTCCGGAATGATGT 57.088 42.857 35.47 19.04 36.48 3.06
3828 4478 4.194640 ACTTCATCTGTTCCGGAATGATG 58.805 43.478 33.83 33.83 36.45 3.07
3829 4479 4.494091 ACTTCATCTGTTCCGGAATGAT 57.506 40.909 22.04 22.11 0.00 2.45
3830 4480 3.981071 ACTTCATCTGTTCCGGAATGA 57.019 42.857 22.04 20.89 0.00 2.57
3831 4481 6.494893 TTTAACTTCATCTGTTCCGGAATG 57.505 37.500 22.04 14.66 0.00 2.67
3832 4482 6.488683 TGTTTTAACTTCATCTGTTCCGGAAT 59.511 34.615 22.04 0.05 0.00 3.01
3833 4483 5.823570 TGTTTTAACTTCATCTGTTCCGGAA 59.176 36.000 14.35 14.35 0.00 4.30
3834 4484 5.369833 TGTTTTAACTTCATCTGTTCCGGA 58.630 37.500 0.00 0.00 0.00 5.14
3835 4485 5.468746 TCTGTTTTAACTTCATCTGTTCCGG 59.531 40.000 0.00 0.00 0.00 5.14
3836 4486 6.363473 GTCTGTTTTAACTTCATCTGTTCCG 58.637 40.000 0.00 0.00 0.00 4.30
3837 4487 6.565999 CGGTCTGTTTTAACTTCATCTGTTCC 60.566 42.308 0.00 0.00 0.00 3.62
3838 4488 6.018180 ACGGTCTGTTTTAACTTCATCTGTTC 60.018 38.462 0.00 0.00 0.00 3.18
3839 4489 5.820947 ACGGTCTGTTTTAACTTCATCTGTT 59.179 36.000 0.00 0.00 0.00 3.16
3840 4490 5.365619 ACGGTCTGTTTTAACTTCATCTGT 58.634 37.500 0.00 0.00 0.00 3.41
3841 4491 5.924475 ACGGTCTGTTTTAACTTCATCTG 57.076 39.130 0.00 0.00 0.00 2.90
3842 4492 9.886132 ATATAACGGTCTGTTTTAACTTCATCT 57.114 29.630 1.53 0.00 42.09 2.90
3843 4493 9.916397 CATATAACGGTCTGTTTTAACTTCATC 57.084 33.333 1.53 0.00 42.09 2.92
3844 4494 9.661563 TCATATAACGGTCTGTTTTAACTTCAT 57.338 29.630 1.53 0.00 42.09 2.57
3845 4495 9.491675 TTCATATAACGGTCTGTTTTAACTTCA 57.508 29.630 1.53 0.00 42.09 3.02
3848 4498 9.275398 TGTTTCATATAACGGTCTGTTTTAACT 57.725 29.630 1.53 0.00 42.09 2.24
3849 4499 9.881529 TTGTTTCATATAACGGTCTGTTTTAAC 57.118 29.630 1.53 0.00 42.09 2.01
3851 4501 8.231837 GCTTGTTTCATATAACGGTCTGTTTTA 58.768 33.333 1.53 0.00 42.09 1.52
3852 4502 7.081976 GCTTGTTTCATATAACGGTCTGTTTT 58.918 34.615 1.53 0.00 42.09 2.43
3853 4503 6.205853 TGCTTGTTTCATATAACGGTCTGTTT 59.794 34.615 1.53 0.00 42.09 2.83
3854 4504 5.703592 TGCTTGTTTCATATAACGGTCTGTT 59.296 36.000 1.93 1.93 44.78 3.16
3855 4505 5.242434 TGCTTGTTTCATATAACGGTCTGT 58.758 37.500 0.00 0.00 0.00 3.41
3856 4506 5.794687 TGCTTGTTTCATATAACGGTCTG 57.205 39.130 0.00 0.00 0.00 3.51
3857 4507 6.112734 TGATGCTTGTTTCATATAACGGTCT 58.887 36.000 0.00 0.00 0.00 3.85
3858 4508 6.358118 TGATGCTTGTTTCATATAACGGTC 57.642 37.500 0.00 0.00 0.00 4.79
3859 4509 6.597672 TCTTGATGCTTGTTTCATATAACGGT 59.402 34.615 0.00 0.00 0.00 4.83
3860 4510 7.015226 TCTTGATGCTTGTTTCATATAACGG 57.985 36.000 0.00 0.00 0.00 4.44
3861 4511 6.630443 GCTCTTGATGCTTGTTTCATATAACG 59.370 38.462 0.00 0.00 0.00 3.18
3862 4512 6.630443 CGCTCTTGATGCTTGTTTCATATAAC 59.370 38.462 0.00 0.00 0.00 1.89
3863 4513 6.538381 TCGCTCTTGATGCTTGTTTCATATAA 59.462 34.615 0.00 0.00 0.00 0.98
3864 4514 6.048509 TCGCTCTTGATGCTTGTTTCATATA 58.951 36.000 0.00 0.00 0.00 0.86
3865 4515 4.877823 TCGCTCTTGATGCTTGTTTCATAT 59.122 37.500 0.00 0.00 0.00 1.78
3866 4516 4.252878 TCGCTCTTGATGCTTGTTTCATA 58.747 39.130 0.00 0.00 0.00 2.15
3867 4517 3.076621 TCGCTCTTGATGCTTGTTTCAT 58.923 40.909 0.00 0.00 0.00 2.57
3868 4518 2.493035 TCGCTCTTGATGCTTGTTTCA 58.507 42.857 0.00 0.00 0.00 2.69
3869 4519 3.542712 TTCGCTCTTGATGCTTGTTTC 57.457 42.857 0.00 0.00 0.00 2.78
3870 4520 4.510038 AATTCGCTCTTGATGCTTGTTT 57.490 36.364 0.00 0.00 0.00 2.83
3871 4521 5.393962 GTTAATTCGCTCTTGATGCTTGTT 58.606 37.500 0.00 0.00 0.00 2.83
3872 4522 4.436050 CGTTAATTCGCTCTTGATGCTTGT 60.436 41.667 0.00 0.00 0.00 3.16
3873 4523 4.024438 CGTTAATTCGCTCTTGATGCTTG 58.976 43.478 0.00 0.00 0.00 4.01
3874 4524 3.063997 CCGTTAATTCGCTCTTGATGCTT 59.936 43.478 0.00 0.00 0.00 3.91
3875 4525 2.609459 CCGTTAATTCGCTCTTGATGCT 59.391 45.455 0.00 0.00 0.00 3.79
3876 4526 2.351726 ACCGTTAATTCGCTCTTGATGC 59.648 45.455 0.00 0.00 0.00 3.91
3877 4527 5.712217 TTACCGTTAATTCGCTCTTGATG 57.288 39.130 0.00 0.00 0.00 3.07
3878 4528 6.730960 TTTTACCGTTAATTCGCTCTTGAT 57.269 33.333 0.00 0.00 0.00 2.57
3879 4529 6.542574 TTTTTACCGTTAATTCGCTCTTGA 57.457 33.333 0.00 0.00 0.00 3.02
3880 4530 7.018826 TGATTTTTACCGTTAATTCGCTCTTG 58.981 34.615 0.00 0.00 0.00 3.02
3881 4531 7.136289 TGATTTTTACCGTTAATTCGCTCTT 57.864 32.000 0.00 0.00 0.00 2.85
3882 4532 6.730960 TGATTTTTACCGTTAATTCGCTCT 57.269 33.333 0.00 0.00 0.00 4.09
3883 4533 7.459219 CGTTTGATTTTTACCGTTAATTCGCTC 60.459 37.037 0.00 0.00 0.00 5.03
3884 4534 6.303733 CGTTTGATTTTTACCGTTAATTCGCT 59.696 34.615 0.00 0.00 0.00 4.93
3885 4535 6.443754 CGTTTGATTTTTACCGTTAATTCGC 58.556 36.000 0.00 0.00 0.00 4.70
3886 4536 6.086502 TGCGTTTGATTTTTACCGTTAATTCG 59.913 34.615 0.00 0.00 0.00 3.34
3887 4537 7.113825 AGTGCGTTTGATTTTTACCGTTAATTC 59.886 33.333 0.00 0.00 0.00 2.17
3888 4538 6.919115 AGTGCGTTTGATTTTTACCGTTAATT 59.081 30.769 0.00 0.00 0.00 1.40
3889 4539 6.440436 AGTGCGTTTGATTTTTACCGTTAAT 58.560 32.000 0.00 0.00 0.00 1.40
3890 4540 5.819059 AGTGCGTTTGATTTTTACCGTTAA 58.181 33.333 0.00 0.00 0.00 2.01
3891 4541 5.421212 AGTGCGTTTGATTTTTACCGTTA 57.579 34.783 0.00 0.00 0.00 3.18
3892 4542 4.295857 AGTGCGTTTGATTTTTACCGTT 57.704 36.364 0.00 0.00 0.00 4.44
3893 4543 3.974871 AGTGCGTTTGATTTTTACCGT 57.025 38.095 0.00 0.00 0.00 4.83
3894 4544 5.854338 ACAATAGTGCGTTTGATTTTTACCG 59.146 36.000 0.00 0.00 0.00 4.02
3895 4545 7.033292 CACAATAGTGCGTTTGATTTTTACC 57.967 36.000 0.00 0.00 39.21 2.85
3910 4560 0.171903 GGGCTGCTTGCACAATAGTG 59.828 55.000 0.00 0.00 46.29 2.74
3911 4561 2.571548 GGGCTGCTTGCACAATAGT 58.428 52.632 0.00 0.00 46.29 2.12
3921 4571 2.674380 CTTTCAGGCGGGCTGCTT 60.674 61.111 25.21 7.94 45.43 3.91
3922 4572 3.196207 TTCTTTCAGGCGGGCTGCT 62.196 57.895 25.21 0.93 45.43 4.24
3923 4573 2.672996 TTCTTTCAGGCGGGCTGC 60.673 61.111 25.21 10.59 45.38 5.25
3924 4574 1.003355 TCTTCTTTCAGGCGGGCTG 60.003 57.895 24.22 24.22 0.00 4.85
3925 4575 1.003233 GTCTTCTTTCAGGCGGGCT 60.003 57.895 0.00 0.00 0.00 5.19
3926 4576 0.606673 AAGTCTTCTTTCAGGCGGGC 60.607 55.000 0.00 0.00 0.00 6.13
3927 4577 1.443802 GAAGTCTTCTTTCAGGCGGG 58.556 55.000 5.27 0.00 33.64 6.13
3928 4578 1.071605 CGAAGTCTTCTTTCAGGCGG 58.928 55.000 10.81 0.00 33.64 6.13
3929 4579 0.440371 GCGAAGTCTTCTTTCAGGCG 59.560 55.000 10.81 0.00 33.64 5.52
3930 4580 1.802069 AGCGAAGTCTTCTTTCAGGC 58.198 50.000 10.81 5.55 33.64 4.85
3931 4581 3.393800 TGAAGCGAAGTCTTCTTTCAGG 58.606 45.455 18.19 3.08 39.88 3.86
3932 4582 4.302455 TCTGAAGCGAAGTCTTCTTTCAG 58.698 43.478 29.07 29.07 43.18 3.02
3933 4583 4.038042 TCTCTGAAGCGAAGTCTTCTTTCA 59.962 41.667 19.72 19.72 39.88 2.69
3934 4584 4.551388 TCTCTGAAGCGAAGTCTTCTTTC 58.449 43.478 10.81 13.26 39.88 2.62
3935 4585 4.592485 TCTCTGAAGCGAAGTCTTCTTT 57.408 40.909 10.81 5.17 39.88 2.52
3936 4586 4.799564 ATCTCTGAAGCGAAGTCTTCTT 57.200 40.909 10.81 0.00 39.88 2.52
3937 4587 4.702612 TGTATCTCTGAAGCGAAGTCTTCT 59.297 41.667 10.81 0.00 39.88 2.85
3938 4588 4.987832 TGTATCTCTGAAGCGAAGTCTTC 58.012 43.478 2.18 2.18 39.72 2.87
3939 4589 4.702612 TCTGTATCTCTGAAGCGAAGTCTT 59.297 41.667 0.00 0.00 0.00 3.01
3940 4590 4.265893 TCTGTATCTCTGAAGCGAAGTCT 58.734 43.478 0.00 0.00 0.00 3.24
3941 4591 4.624336 TCTGTATCTCTGAAGCGAAGTC 57.376 45.455 0.00 0.00 0.00 3.01
3942 4592 4.736168 GCATCTGTATCTCTGAAGCGAAGT 60.736 45.833 0.00 0.00 31.53 3.01
3943 4593 3.735240 GCATCTGTATCTCTGAAGCGAAG 59.265 47.826 0.00 0.00 31.53 3.79
3944 4594 3.131046 TGCATCTGTATCTCTGAAGCGAA 59.869 43.478 0.00 0.00 40.05 4.70
3945 4595 2.689983 TGCATCTGTATCTCTGAAGCGA 59.310 45.455 0.00 0.00 40.05 4.93
3946 4596 3.051327 CTGCATCTGTATCTCTGAAGCG 58.949 50.000 0.00 0.00 40.05 4.68
3947 4597 4.319139 TCTGCATCTGTATCTCTGAAGC 57.681 45.455 0.00 0.00 38.53 3.86
3948 4598 6.424509 GGATTTCTGCATCTGTATCTCTGAAG 59.575 42.308 0.00 0.00 0.00 3.02
3949 4599 6.099413 AGGATTTCTGCATCTGTATCTCTGAA 59.901 38.462 0.00 0.00 0.00 3.02
3950 4600 5.601729 AGGATTTCTGCATCTGTATCTCTGA 59.398 40.000 0.00 0.00 0.00 3.27
3951 4601 5.697178 CAGGATTTCTGCATCTGTATCTCTG 59.303 44.000 0.00 0.00 36.60 3.35
3952 4602 5.856156 CAGGATTTCTGCATCTGTATCTCT 58.144 41.667 0.00 0.00 36.60 3.10
3965 4615 5.399858 CAAGAATGTCTTGCAGGATTTCTG 58.600 41.667 20.35 13.70 46.03 3.02
3966 4616 5.640189 CAAGAATGTCTTGCAGGATTTCT 57.360 39.130 16.38 16.38 46.03 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.