Multiple sequence alignment - TraesCS2A01G418100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G418100 chr2A 100.000 3206 0 0 1 3206 673958725 673955520 0.000000e+00 5921.0
1 TraesCS2A01G418100 chr2A 91.823 1443 79 14 855 2285 673549922 673548507 0.000000e+00 1975.0
2 TraesCS2A01G418100 chr2A 79.288 1067 195 21 1124 2181 673513873 673512824 0.000000e+00 723.0
3 TraesCS2A01G418100 chr2A 78.221 877 153 24 1315 2167 705995370 705994508 7.880000e-146 527.0
4 TraesCS2A01G418100 chr2A 89.048 210 22 1 2997 3206 673545038 673544830 3.170000e-65 259.0
5 TraesCS2A01G418100 chr2A 79.545 220 35 6 96 312 733581502 733581290 7.170000e-32 148.0
6 TraesCS2A01G418100 chr2A 96.429 84 3 0 775 858 673550039 673549956 4.310000e-29 139.0
7 TraesCS2A01G418100 chr2A 79.200 125 19 7 1120 1242 673995418 673995299 2.650000e-11 80.5
8 TraesCS2A01G418100 chr2D 92.042 1445 96 7 855 2285 529037347 529035908 0.000000e+00 2013.0
9 TraesCS2A01G418100 chr2D 79.569 1067 187 24 1124 2178 529013676 529012629 0.000000e+00 734.0
10 TraesCS2A01G418100 chr2D 84.824 626 84 11 2375 2995 522130745 522131364 1.260000e-173 619.0
11 TraesCS2A01G418100 chr2D 77.895 1045 165 28 1315 2327 565859600 565858590 9.910000e-165 590.0
12 TraesCS2A01G418100 chr2D 76.014 1109 226 26 1120 2206 529043047 529041957 3.640000e-149 538.0
13 TraesCS2A01G418100 chr2D 87.719 114 13 1 3092 3205 529033790 529033678 7.220000e-27 132.0
14 TraesCS2A01G418100 chr2B 89.596 1509 109 22 674 2145 628398682 628397185 0.000000e+00 1873.0
15 TraesCS2A01G418100 chr2B 78.725 1067 202 21 1124 2181 628208656 628207606 0.000000e+00 689.0
16 TraesCS2A01G418100 chr2B 83.871 620 90 10 2391 3005 94937878 94937264 1.660000e-162 582.0
17 TraesCS2A01G418100 chr2B 83.284 682 56 22 1 667 628399476 628398838 2.770000e-160 575.0
18 TraesCS2A01G418100 chr2B 81.877 618 108 2 1553 2167 677964031 677964647 4.740000e-143 518.0
19 TraesCS2A01G418100 chr2B 94.853 136 5 2 2151 2284 628381894 628381759 9.010000e-51 211.0
20 TraesCS2A01G418100 chr2B 91.304 115 10 0 3092 3206 628380550 628380436 1.190000e-34 158.0
21 TraesCS2A01G418100 chr2B 71.405 598 130 23 1120 1710 628419752 628419189 5.620000e-23 119.0
22 TraesCS2A01G418100 chr2B 93.846 65 4 0 2995 3059 628380614 628380550 7.320000e-17 99.0
23 TraesCS2A01G418100 chr7B 83.775 641 96 8 2359 2995 23577615 23578251 4.580000e-168 601.0
24 TraesCS2A01G418100 chr7B 76.174 298 36 18 58 328 600589651 600589940 1.210000e-24 124.0
25 TraesCS2A01G418100 chr3B 83.667 649 90 14 2359 3000 4652055 4651416 5.920000e-167 597.0
26 TraesCS2A01G418100 chr3B 79.928 279 27 13 59 323 700376358 700376621 9.140000e-41 178.0
27 TraesCS2A01G418100 chr5D 83.410 651 96 10 2359 3004 457668725 457669368 7.660000e-166 593.0
28 TraesCS2A01G418100 chrUn 83.176 636 99 8 2364 2995 89533009 89532378 2.770000e-160 575.0
29 TraesCS2A01G418100 chrUn 81.553 206 24 10 58 261 108921374 108921181 1.190000e-34 158.0
30 TraesCS2A01G418100 chr7D 83.438 634 89 11 2375 2997 580887052 580887680 2.770000e-160 575.0
31 TraesCS2A01G418100 chr7D 83.494 624 95 8 2375 2995 627404587 627403969 2.770000e-160 575.0
32 TraesCS2A01G418100 chr7D 80.788 203 33 5 59 260 568271536 568271339 1.540000e-33 154.0
33 TraesCS2A01G418100 chr7D 80.583 206 30 9 60 261 100647328 100647129 1.990000e-32 150.0
34 TraesCS2A01G418100 chr3A 83.744 609 89 10 2391 2993 729707026 729706422 4.640000e-158 568.0
35 TraesCS2A01G418100 chr3A 91.429 70 6 0 256 325 37431213 37431144 2.630000e-16 97.1
36 TraesCS2A01G418100 chr3A 91.429 70 6 0 256 325 37464489 37464420 2.630000e-16 97.1
37 TraesCS2A01G418100 chr3D 80.427 281 34 11 59 323 529786933 529787208 9.070000e-46 195.0
38 TraesCS2A01G418100 chr3D 79.615 260 39 10 58 313 556858261 556858510 1.180000e-39 174.0
39 TraesCS2A01G418100 chr5A 76.792 293 31 17 57 326 423872697 423872975 2.600000e-26 130.0
40 TraesCS2A01G418100 chr6B 75.000 192 32 11 54 244 684429777 684429953 1.230000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G418100 chr2A 673955520 673958725 3205 True 5921.0 5921 100.000000 1 3206 1 chr2A.!!$R2 3205
1 TraesCS2A01G418100 chr2A 673544830 673550039 5209 True 791.0 1975 92.433333 775 3206 3 chr2A.!!$R6 2431
2 TraesCS2A01G418100 chr2A 673512824 673513873 1049 True 723.0 723 79.288000 1124 2181 1 chr2A.!!$R1 1057
3 TraesCS2A01G418100 chr2A 705994508 705995370 862 True 527.0 527 78.221000 1315 2167 1 chr2A.!!$R4 852
4 TraesCS2A01G418100 chr2D 529033678 529037347 3669 True 1072.5 2013 89.880500 855 3205 2 chr2D.!!$R4 2350
5 TraesCS2A01G418100 chr2D 529012629 529013676 1047 True 734.0 734 79.569000 1124 2178 1 chr2D.!!$R1 1054
6 TraesCS2A01G418100 chr2D 522130745 522131364 619 False 619.0 619 84.824000 2375 2995 1 chr2D.!!$F1 620
7 TraesCS2A01G418100 chr2D 565858590 565859600 1010 True 590.0 590 77.895000 1315 2327 1 chr2D.!!$R3 1012
8 TraesCS2A01G418100 chr2D 529041957 529043047 1090 True 538.0 538 76.014000 1120 2206 1 chr2D.!!$R2 1086
9 TraesCS2A01G418100 chr2B 628397185 628399476 2291 True 1224.0 1873 86.440000 1 2145 2 chr2B.!!$R5 2144
10 TraesCS2A01G418100 chr2B 628207606 628208656 1050 True 689.0 689 78.725000 1124 2181 1 chr2B.!!$R2 1057
11 TraesCS2A01G418100 chr2B 94937264 94937878 614 True 582.0 582 83.871000 2391 3005 1 chr2B.!!$R1 614
12 TraesCS2A01G418100 chr2B 677964031 677964647 616 False 518.0 518 81.877000 1553 2167 1 chr2B.!!$F1 614
13 TraesCS2A01G418100 chr7B 23577615 23578251 636 False 601.0 601 83.775000 2359 2995 1 chr7B.!!$F1 636
14 TraesCS2A01G418100 chr3B 4651416 4652055 639 True 597.0 597 83.667000 2359 3000 1 chr3B.!!$R1 641
15 TraesCS2A01G418100 chr5D 457668725 457669368 643 False 593.0 593 83.410000 2359 3004 1 chr5D.!!$F1 645
16 TraesCS2A01G418100 chrUn 89532378 89533009 631 True 575.0 575 83.176000 2364 2995 1 chrUn.!!$R1 631
17 TraesCS2A01G418100 chr7D 580887052 580887680 628 False 575.0 575 83.438000 2375 2997 1 chr7D.!!$F1 622
18 TraesCS2A01G418100 chr7D 627403969 627404587 618 True 575.0 575 83.494000 2375 2995 1 chr7D.!!$R3 620
19 TraesCS2A01G418100 chr3A 729706422 729707026 604 True 568.0 568 83.744000 2391 2993 1 chr3A.!!$R3 602

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
399 422 0.040157 CACCATGTGTGCTTCCAACG 60.040 55.0 2.04 0.0 38.34 4.10 F
1081 1309 0.240945 GATGGGAAGCACAAACACCG 59.759 55.0 0.00 0.0 0.00 4.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1326 1568 0.179067 TGAACTTGAAGGACGCCGTT 60.179 50.0 0.0 0.0 0.0 4.44 R
2644 8387 0.036010 CACCAAAGACAGATCCGCCT 60.036 55.0 0.0 0.0 0.0 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.682936 ATCATCAGGTATAACCAATGAAAGTC 57.317 34.615 14.38 0.00 42.24 3.01
56 57 6.486657 TCAAAATTAGAGTTGTCACCTCCAAG 59.513 38.462 0.00 0.00 0.00 3.61
132 133 6.417191 TTCGGCAGTCACTGAAATATTTAC 57.583 37.500 9.70 0.00 32.01 2.01
133 134 4.873827 TCGGCAGTCACTGAAATATTTACC 59.126 41.667 9.70 0.00 32.44 2.85
134 135 4.876107 CGGCAGTCACTGAAATATTTACCT 59.124 41.667 9.70 0.00 32.44 3.08
135 136 5.354234 CGGCAGTCACTGAAATATTTACCTT 59.646 40.000 9.70 0.00 32.44 3.50
136 137 6.128007 CGGCAGTCACTGAAATATTTACCTTT 60.128 38.462 9.70 0.00 32.44 3.11
137 138 7.251281 GGCAGTCACTGAAATATTTACCTTTC 58.749 38.462 9.70 0.00 32.44 2.62
138 139 7.094377 GGCAGTCACTGAAATATTTACCTTTCA 60.094 37.037 9.70 0.00 38.64 2.69
248 258 6.757897 TGAATTCAAGTGAATATTTCGCCT 57.242 33.333 5.45 0.00 43.41 5.52
249 259 7.156876 TGAATTCAAGTGAATATTTCGCCTT 57.843 32.000 5.45 0.00 43.41 4.35
254 264 6.155827 TCAAGTGAATATTTCGCCTTTTTGG 58.844 36.000 0.00 0.00 40.99 3.28
267 277 4.439305 CCTTTTTGGCTGAAATCATCGA 57.561 40.909 0.00 0.00 0.00 3.59
268 278 4.808558 CCTTTTTGGCTGAAATCATCGAA 58.191 39.130 0.00 0.00 0.00 3.71
269 279 5.413499 CCTTTTTGGCTGAAATCATCGAAT 58.587 37.500 0.00 0.00 0.00 3.34
270 280 5.870978 CCTTTTTGGCTGAAATCATCGAATT 59.129 36.000 0.00 0.00 0.00 2.17
271 281 6.369615 CCTTTTTGGCTGAAATCATCGAATTT 59.630 34.615 0.00 0.00 0.00 1.82
272 282 6.949578 TTTTGGCTGAAATCATCGAATTTC 57.050 33.333 13.37 13.37 43.10 2.17
273 283 4.277257 TGGCTGAAATCATCGAATTTCG 57.723 40.909 12.54 12.54 44.85 3.46
275 285 3.065371 GGCTGAAATCATCGAATTTCGGT 59.935 43.478 23.07 8.96 46.67 4.69
314 337 7.121911 GCTGAAATTTTTCTGAAACTGAAAGC 58.878 34.615 12.42 5.02 38.07 3.51
315 338 7.538303 TGAAATTTTTCTGAAACTGAAAGCC 57.462 32.000 1.58 0.00 36.20 4.35
390 413 3.305709 ACGGAAGTCACCATGTGTG 57.694 52.632 7.72 7.72 44.19 3.82
391 414 0.884704 ACGGAAGTCACCATGTGTGC 60.885 55.000 8.87 5.49 44.19 4.57
392 415 0.603707 CGGAAGTCACCATGTGTGCT 60.604 55.000 8.87 7.20 45.03 4.40
393 416 1.609208 GGAAGTCACCATGTGTGCTT 58.391 50.000 16.13 16.13 45.03 3.91
394 417 1.537202 GGAAGTCACCATGTGTGCTTC 59.463 52.381 23.70 23.70 46.24 3.86
395 418 1.537202 GAAGTCACCATGTGTGCTTCC 59.463 52.381 22.64 14.20 44.02 3.46
396 419 0.473755 AGTCACCATGTGTGCTTCCA 59.526 50.000 8.87 0.00 45.03 3.53
397 420 1.133823 AGTCACCATGTGTGCTTCCAA 60.134 47.619 8.87 0.00 45.03 3.53
398 421 1.001378 GTCACCATGTGTGCTTCCAAC 60.001 52.381 8.87 0.00 45.03 3.77
399 422 0.040157 CACCATGTGTGCTTCCAACG 60.040 55.000 2.04 0.00 38.34 4.10
400 423 1.081242 CCATGTGTGCTTCCAACGC 60.081 57.895 0.00 0.00 0.00 4.84
401 424 1.440850 CATGTGTGCTTCCAACGCG 60.441 57.895 3.53 3.53 0.00 6.01
402 425 2.616330 ATGTGTGCTTCCAACGCGG 61.616 57.895 12.47 0.00 0.00 6.46
460 487 1.408702 AGCTTTGACAATGCCAAACGT 59.591 42.857 19.31 0.87 32.41 3.99
474 501 3.602062 GCCAAACGTATGAAATGAACACG 59.398 43.478 0.00 0.00 38.52 4.49
475 502 4.611807 GCCAAACGTATGAAATGAACACGA 60.612 41.667 0.00 0.00 36.51 4.35
476 503 5.627172 CCAAACGTATGAAATGAACACGAT 58.373 37.500 0.00 0.00 36.51 3.73
487 514 8.520835 TGAAATGAACACGATATATACTCAGC 57.479 34.615 0.00 0.00 0.00 4.26
502 529 1.170290 TCAGCAGAACCACTCGTCGA 61.170 55.000 0.00 0.00 0.00 4.20
503 530 1.004277 CAGCAGAACCACTCGTCGAC 61.004 60.000 5.18 5.18 0.00 4.20
504 531 2.081212 GCAGAACCACTCGTCGACG 61.081 63.158 31.30 31.30 41.45 5.12
531 558 0.528901 TATAAGCCACGCGCACGATT 60.529 50.000 5.73 0.44 43.93 3.34
533 560 0.736672 TAAGCCACGCGCACGATTAA 60.737 50.000 5.73 0.00 43.93 1.40
550 577 3.671008 TTAACTTAGCCGAGTTCTGCA 57.329 42.857 5.66 0.00 40.24 4.41
586 613 1.346068 GGCTAGCTAGGCATAACAGCT 59.654 52.381 35.27 0.00 46.94 4.24
589 616 3.306641 GCTAGCTAGGCATAACAGCTGAT 60.307 47.826 23.35 12.06 45.04 2.90
634 661 2.109126 CCTGCCGCTTGCTTCTACC 61.109 63.158 0.00 0.00 42.00 3.18
635 662 2.434185 TGCCGCTTGCTTCTACCG 60.434 61.111 0.00 0.00 42.00 4.02
679 847 3.753797 GGCAAACTTAAGTGAGGAGGAAG 59.246 47.826 9.34 0.00 0.00 3.46
680 848 3.753797 GCAAACTTAAGTGAGGAGGAAGG 59.246 47.826 9.34 0.00 0.00 3.46
681 849 4.505039 GCAAACTTAAGTGAGGAGGAAGGA 60.505 45.833 9.34 0.00 0.00 3.36
682 850 5.804771 GCAAACTTAAGTGAGGAGGAAGGAT 60.805 44.000 9.34 0.00 0.00 3.24
684 852 4.430441 ACTTAAGTGAGGAGGAAGGATGT 58.570 43.478 7.48 0.00 0.00 3.06
692 868 4.712337 TGAGGAGGAAGGATGTAGAGTTTC 59.288 45.833 0.00 0.00 0.00 2.78
697 873 5.799213 AGGAAGGATGTAGAGTTTCAAGTG 58.201 41.667 0.00 0.00 0.00 3.16
704 880 4.065088 TGTAGAGTTTCAAGTGTGGATGC 58.935 43.478 0.00 0.00 0.00 3.91
707 883 2.622942 GAGTTTCAAGTGTGGATGCCAA 59.377 45.455 0.00 0.00 34.18 4.52
722 898 4.022329 GGATGCCAAAATATTACCCGGAAG 60.022 45.833 0.73 0.00 0.00 3.46
806 982 1.047596 AGATGCAGCCTCGATGGTCT 61.048 55.000 0.00 0.00 38.35 3.85
841 1022 5.918608 AGCCATGTATAAACCTGTAGACAG 58.081 41.667 2.50 2.50 43.40 3.51
848 1029 8.589701 TGTATAAACCTGTAGACAGAATCTGA 57.410 34.615 18.20 0.00 46.59 3.27
900 1118 1.348036 CCCAGAGTCGAAAAGGAAGGT 59.652 52.381 0.00 0.00 0.00 3.50
984 1203 5.136068 TCCATATAAAATGGCCACTTCCA 57.864 39.130 8.16 0.00 39.01 3.53
994 1213 0.319297 GCCACTTCCACTTCGTACGT 60.319 55.000 16.05 0.00 0.00 3.57
995 1214 1.694639 CCACTTCCACTTCGTACGTC 58.305 55.000 16.05 0.00 0.00 4.34
996 1215 1.324718 CACTTCCACTTCGTACGTCG 58.675 55.000 16.05 9.88 41.41 5.12
1014 1233 3.582780 GTCGATCTTACCCGAAACAACT 58.417 45.455 0.00 0.00 36.50 3.16
1081 1309 0.240945 GATGGGAAGCACAAACACCG 59.759 55.000 0.00 0.00 0.00 4.94
1174 1408 1.734137 CTGCACCCGTCGCTACTAT 59.266 57.895 0.00 0.00 0.00 2.12
1279 1521 7.064371 GCGACCTCGATTATTATAGAGACTACA 59.936 40.741 3.71 0.00 43.02 2.74
1302 1544 2.092592 GGGGGTGTTCCTCGATTTATGT 60.093 50.000 0.00 0.00 34.36 2.29
1326 1568 0.251922 ACCACAAGGACGCTAGGGTA 60.252 55.000 13.07 0.00 38.69 3.69
1391 1633 1.221466 CCGCCGCATACGATGACAAT 61.221 55.000 0.00 0.00 43.93 2.71
1396 1638 2.607180 CCGCATACGATGACAATGACAA 59.393 45.455 0.00 0.00 43.93 3.18
1481 1754 3.459063 GGCGTCGCCTTACCTCCT 61.459 66.667 28.98 0.00 46.69 3.69
1482 1755 2.123428 GGCGTCGCCTTACCTCCTA 61.123 63.158 28.98 0.00 46.69 2.94
1543 1822 3.307242 CGAGGATGAGAAATCGTTTGTCC 59.693 47.826 5.59 0.00 32.40 4.02
1548 1845 4.079980 TGAGAAATCGTTTGTCCAGGAA 57.920 40.909 0.00 0.00 32.40 3.36
1587 1884 2.103094 CACGGATCATCTTGGGAAGCTA 59.897 50.000 0.00 0.00 0.00 3.32
1621 1918 0.320946 GGGGACCGACGTCATTTTCA 60.321 55.000 17.16 0.00 40.86 2.69
1631 1928 3.813166 GACGTCATTTTCAAGGTCCAAGA 59.187 43.478 11.55 0.00 0.00 3.02
1843 2155 7.744059 ACGTGATGACTATAGAGATATTGTCG 58.256 38.462 6.78 3.20 35.81 4.35
1881 2193 0.250234 CGGATCGGTATGCCATGGAT 59.750 55.000 18.40 8.90 34.09 3.41
1956 2275 1.944709 GTGGTGACTACGTTGGCTTTT 59.055 47.619 4.09 0.00 0.00 2.27
2061 2380 2.198827 TGACAAGCCAAGGGTATGTG 57.801 50.000 9.65 0.25 0.00 3.21
2067 2386 2.196595 AGCCAAGGGTATGTGAAGCTA 58.803 47.619 0.00 0.00 0.00 3.32
2316 8048 4.156556 ACGTGCTATACCTTTGTAACGAGA 59.843 41.667 0.00 0.00 33.70 4.04
2343 8077 9.257651 GTCTTACTCAAAAAGTATGTGTACTGT 57.742 33.333 0.00 0.00 40.24 3.55
2351 8085 4.785511 AGTATGTGTACTGTGTCAGGAC 57.214 45.455 5.29 5.29 44.96 3.85
2362 8096 1.181741 TGTCAGGACGAGAAGCAGCT 61.182 55.000 0.00 0.00 0.00 4.24
2366 8100 2.264166 GACGAGAAGCAGCTGCCT 59.736 61.111 34.39 24.97 43.38 4.75
2370 8104 1.299321 GAGAAGCAGCTGCCTCCTT 59.701 57.895 34.39 22.18 43.38 3.36
2399 8133 0.786435 AGGGTTTCTTTGCCTCCCAT 59.214 50.000 0.00 0.00 40.48 4.00
2453 8192 1.607612 CTTAGGGCCATGGGAACGT 59.392 57.895 15.13 0.00 0.00 3.99
2473 8212 4.794648 TGGATTCCGGCCCTTGCG 62.795 66.667 0.00 0.00 38.85 4.85
2502 8242 5.372547 AAGGCTCCGTTTTTACATCTTTC 57.627 39.130 0.00 0.00 0.00 2.62
2547 8289 1.270305 CCTGTTCAGGAAAGCGAGACA 60.270 52.381 13.02 0.00 0.00 3.41
2548 8290 2.483876 CTGTTCAGGAAAGCGAGACAA 58.516 47.619 0.00 0.00 0.00 3.18
2551 8293 0.671796 TCAGGAAAGCGAGACAACGA 59.328 50.000 0.00 0.00 35.09 3.85
2573 8316 2.362077 CGGCCCCTGAAAATGGAATAAG 59.638 50.000 0.00 0.00 0.00 1.73
2575 8318 3.374764 GCCCCTGAAAATGGAATAAGGT 58.625 45.455 0.00 0.00 0.00 3.50
2594 8337 4.235057 CTCCCCGCCTAGCCCCTA 62.235 72.222 0.00 0.00 0.00 3.53
2597 8340 2.154074 CCCCGCCTAGCCCCTATTT 61.154 63.158 0.00 0.00 0.00 1.40
2600 8343 1.469335 CCGCCTAGCCCCTATTTCGA 61.469 60.000 0.00 0.00 0.00 3.71
2603 8346 1.339151 GCCTAGCCCCTATTTCGATGG 60.339 57.143 0.00 0.00 0.00 3.51
2607 8350 0.465460 GCCCCTATTTCGATGGTGCA 60.465 55.000 0.00 0.00 0.00 4.57
2613 8356 4.262635 CCCTATTTCGATGGTGCATCTAGT 60.263 45.833 0.00 0.00 38.59 2.57
2635 8378 3.164977 TTGGTGGGCGTGTGGAGA 61.165 61.111 0.00 0.00 0.00 3.71
2671 8414 2.238521 TCTGTCTTTGGTGGATTTGCC 58.761 47.619 0.00 0.00 37.10 4.52
2680 8423 1.396653 GTGGATTTGCCTGGATCTGG 58.603 55.000 0.00 0.00 37.63 3.86
2685 8431 0.036388 TTTGCCTGGATCTGGTCGTC 60.036 55.000 0.00 0.00 0.00 4.20
2686 8432 1.191489 TTGCCTGGATCTGGTCGTCA 61.191 55.000 0.00 0.00 0.00 4.35
2687 8433 0.977627 TGCCTGGATCTGGTCGTCAT 60.978 55.000 0.00 0.00 0.00 3.06
2694 8440 2.617308 GGATCTGGTCGTCATTCGTCTA 59.383 50.000 0.00 0.00 40.80 2.59
2701 8447 1.726248 TCGTCATTCGTCTACGTTCGA 59.274 47.619 0.00 0.00 40.80 3.71
2741 8487 8.232913 GATCCTTTTGATCTACACTACTCTCT 57.767 38.462 0.00 0.00 45.46 3.10
2747 8493 6.422344 TGATCTACACTACTCTCTATCGGT 57.578 41.667 0.00 0.00 0.00 4.69
2756 8502 2.219458 CTCTCTATCGGTAGCGGTTGA 58.781 52.381 15.23 12.94 0.00 3.18
2764 8510 1.671850 CGGTAGCGGTTGATGTTCTGT 60.672 52.381 6.39 0.00 0.00 3.41
2771 8517 2.540769 CGGTTGATGTTCTGTTGCGTTT 60.541 45.455 0.00 0.00 0.00 3.60
2793 8539 1.071471 CTATGGGGCCTTAGCACGG 59.929 63.158 0.84 0.00 46.55 4.94
2809 8555 2.432628 GGCGACTTCCCGACTGTG 60.433 66.667 0.00 0.00 34.11 3.66
2837 8583 0.310854 CAAGTTTTGTCCGGCTCCAC 59.689 55.000 0.00 0.00 0.00 4.02
2838 8584 0.106918 AAGTTTTGTCCGGCTCCACA 60.107 50.000 0.00 0.00 0.00 4.17
2904 8651 2.430248 TGTAGTCATCGCTAGGTGGA 57.570 50.000 0.00 0.00 0.00 4.02
2964 8711 9.469807 GTGTTTATTGTACAACCATGATTGAAA 57.530 29.630 11.22 0.00 33.57 2.69
3068 8818 4.559153 GTTAGCATTTTGACAGTGGCATT 58.441 39.130 0.00 0.00 0.00 3.56
3072 8822 5.232463 AGCATTTTGACAGTGGCATTTTAG 58.768 37.500 0.00 0.00 0.00 1.85
3074 8824 5.107375 GCATTTTGACAGTGGCATTTTAGTG 60.107 40.000 0.00 0.00 0.00 2.74
3075 8825 5.843673 TTTTGACAGTGGCATTTTAGTGA 57.156 34.783 0.00 0.00 0.00 3.41
3081 8831 5.754782 ACAGTGGCATTTTAGTGATATCCA 58.245 37.500 0.00 0.00 0.00 3.41
3123 8873 6.368791 CGCTGCCTTGTATCTTATTATAAGCA 59.631 38.462 7.08 0.12 0.00 3.91
3146 8896 2.878406 AGTGTCAAAACATGGGTTCTCG 59.122 45.455 0.00 0.00 37.81 4.04
3148 8898 2.227194 GTCAAAACATGGGTTCTCGGT 58.773 47.619 0.00 0.00 35.82 4.69
3150 8900 2.882137 TCAAAACATGGGTTCTCGGTTC 59.118 45.455 0.00 0.00 35.82 3.62
3152 8902 1.892209 AACATGGGTTCTCGGTTCAC 58.108 50.000 0.00 0.00 29.00 3.18
3164 8914 0.316204 CGGTTCACGTCCACCTAAGT 59.684 55.000 10.32 0.00 37.93 2.24
3176 8926 3.830755 TCCACCTAAGTTGAGTAGTGACC 59.169 47.826 0.00 0.00 0.00 4.02
3189 8939 4.766375 AGTAGTGACCGGAAAATACATGG 58.234 43.478 9.46 0.00 0.00 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 5.763204 TGGAGGTGACAACTCTAATTTTGAC 59.237 40.000 19.73 0.92 35.34 3.18
32 33 6.633500 TTGGAGGTGACAACTCTAATTTTG 57.367 37.500 19.73 0.00 31.64 2.44
91 92 7.072177 TGCCGAAATTAGTGAAATTCAGTAG 57.928 36.000 10.08 0.66 36.76 2.57
92 93 6.653320 ACTGCCGAAATTAGTGAAATTCAGTA 59.347 34.615 6.45 6.45 37.24 2.74
110 111 4.873827 GGTAAATATTTCAGTGACTGCCGA 59.126 41.667 7.93 0.00 0.00 5.54
112 113 6.759497 AAGGTAAATATTTCAGTGACTGCC 57.241 37.500 7.93 0.00 0.00 4.85
220 230 9.554724 GCGAAATATTCACTTGAATTCAACTAA 57.445 29.630 16.91 11.22 41.64 2.24
221 231 8.181573 GGCGAAATATTCACTTGAATTCAACTA 58.818 33.333 16.91 2.82 41.64 2.24
222 232 7.029563 GGCGAAATATTCACTTGAATTCAACT 58.970 34.615 16.91 5.67 41.64 3.16
223 233 7.029563 AGGCGAAATATTCACTTGAATTCAAC 58.970 34.615 16.91 2.79 41.64 3.18
248 258 6.089283 CGAAATTCGATGATTTCAGCCAAAAA 59.911 34.615 10.18 0.00 43.74 1.94
249 259 5.572511 CGAAATTCGATGATTTCAGCCAAAA 59.427 36.000 10.18 0.00 43.74 2.44
254 264 4.031028 CACCGAAATTCGATGATTTCAGC 58.969 43.478 17.75 0.00 43.74 4.26
262 272 4.258935 ACGAAATCACCGAAATTCGATG 57.741 40.909 17.75 10.65 45.45 3.84
263 273 4.939509 AACGAAATCACCGAAATTCGAT 57.060 36.364 17.75 0.00 45.45 3.59
264 274 4.459606 CAAACGAAATCACCGAAATTCGA 58.540 39.130 17.75 0.00 45.45 3.71
266 276 4.381566 CACCAAACGAAATCACCGAAATTC 59.618 41.667 0.00 0.00 0.00 2.17
267 277 4.295051 CACCAAACGAAATCACCGAAATT 58.705 39.130 0.00 0.00 0.00 1.82
268 278 3.855524 GCACCAAACGAAATCACCGAAAT 60.856 43.478 0.00 0.00 0.00 2.17
269 279 2.541999 GCACCAAACGAAATCACCGAAA 60.542 45.455 0.00 0.00 0.00 3.46
270 280 1.002251 GCACCAAACGAAATCACCGAA 60.002 47.619 0.00 0.00 0.00 4.30
271 281 0.589223 GCACCAAACGAAATCACCGA 59.411 50.000 0.00 0.00 0.00 4.69
272 282 0.591170 AGCACCAAACGAAATCACCG 59.409 50.000 0.00 0.00 0.00 4.94
273 283 1.606668 TCAGCACCAAACGAAATCACC 59.393 47.619 0.00 0.00 0.00 4.02
274 284 3.347958 TTCAGCACCAAACGAAATCAC 57.652 42.857 0.00 0.00 0.00 3.06
275 285 4.582701 ATTTCAGCACCAAACGAAATCA 57.417 36.364 0.00 0.00 33.87 2.57
276 286 5.905480 AAATTTCAGCACCAAACGAAATC 57.095 34.783 0.00 0.00 37.15 2.17
283 306 6.878389 AGTTTCAGAAAAATTTCAGCACCAAA 59.122 30.769 8.47 0.00 39.61 3.28
314 337 0.033920 GCTTGGAGGCAAGGTTTTGG 59.966 55.000 0.00 0.00 34.79 3.28
315 338 1.043022 AGCTTGGAGGCAAGGTTTTG 58.957 50.000 0.00 0.00 39.55 2.44
365 388 1.098712 TGGTGACTTCCGTTTGTGGC 61.099 55.000 0.00 0.00 0.00 5.01
389 412 3.959975 GTTGCCGCGTTGGAAGCA 61.960 61.111 4.92 2.82 42.00 3.91
415 438 4.388499 ACGACGGTGGGGACATGC 62.388 66.667 0.00 0.00 46.14 4.06
474 501 6.072397 ACGAGTGGTTCTGCTGAGTATATATC 60.072 42.308 0.00 0.00 0.00 1.63
475 502 5.770663 ACGAGTGGTTCTGCTGAGTATATAT 59.229 40.000 0.00 0.00 0.00 0.86
476 503 5.131067 ACGAGTGGTTCTGCTGAGTATATA 58.869 41.667 0.00 0.00 0.00 0.86
487 514 1.572941 TCGTCGACGAGTGGTTCTG 59.427 57.895 34.97 4.96 44.22 3.02
502 529 3.488310 CGCGTGGCTTATACTTTTATCGT 59.512 43.478 0.00 0.00 0.00 3.73
503 530 3.660904 GCGCGTGGCTTATACTTTTATCG 60.661 47.826 8.43 0.00 39.11 2.92
504 531 3.246699 TGCGCGTGGCTTATACTTTTATC 59.753 43.478 8.43 0.00 44.05 1.75
505 532 3.001939 GTGCGCGTGGCTTATACTTTTAT 59.998 43.478 8.43 0.00 44.05 1.40
506 533 2.349275 GTGCGCGTGGCTTATACTTTTA 59.651 45.455 8.43 0.00 44.05 1.52
507 534 1.129811 GTGCGCGTGGCTTATACTTTT 59.870 47.619 8.43 0.00 44.05 2.27
508 535 0.725117 GTGCGCGTGGCTTATACTTT 59.275 50.000 8.43 0.00 44.05 2.66
509 536 1.418342 CGTGCGCGTGGCTTATACTT 61.418 55.000 12.43 0.00 44.05 2.24
518 545 0.993532 TAAGTTAATCGTGCGCGTGG 59.006 50.000 20.50 0.00 39.49 4.94
531 558 3.671008 TTGCAGAACTCGGCTAAGTTA 57.329 42.857 3.55 0.00 39.55 2.24
533 560 2.770164 ATTGCAGAACTCGGCTAAGT 57.230 45.000 3.55 0.00 37.92 2.24
550 577 5.760131 AGCTAGCCCAACAGAGAATAAATT 58.240 37.500 12.13 0.00 0.00 1.82
586 613 4.331968 ACGGGATTGAACAAAAGCTATCA 58.668 39.130 0.00 0.00 0.00 2.15
589 616 2.739913 CGACGGGATTGAACAAAAGCTA 59.260 45.455 0.00 0.00 0.00 3.32
634 661 7.330946 TGCCGTCCTATAATTAATTGATCTTCG 59.669 37.037 11.05 8.69 0.00 3.79
635 662 8.547967 TGCCGTCCTATAATTAATTGATCTTC 57.452 34.615 11.05 0.00 0.00 2.87
647 674 6.646267 TCACTTAAGTTTGCCGTCCTATAAT 58.354 36.000 5.07 0.00 0.00 1.28
654 681 2.737252 CTCCTCACTTAAGTTTGCCGTC 59.263 50.000 5.07 0.00 0.00 4.79
679 847 4.894784 TCCACACTTGAAACTCTACATCC 58.105 43.478 0.00 0.00 0.00 3.51
680 848 5.163814 GCATCCACACTTGAAACTCTACATC 60.164 44.000 0.00 0.00 0.00 3.06
681 849 4.697352 GCATCCACACTTGAAACTCTACAT 59.303 41.667 0.00 0.00 0.00 2.29
682 850 4.065088 GCATCCACACTTGAAACTCTACA 58.935 43.478 0.00 0.00 0.00 2.74
684 852 3.072330 TGGCATCCACACTTGAAACTCTA 59.928 43.478 0.00 0.00 0.00 2.43
692 868 6.042143 GGTAATATTTTGGCATCCACACTTG 58.958 40.000 0.00 0.00 30.78 3.16
697 873 3.005367 CCGGGTAATATTTTGGCATCCAC 59.995 47.826 0.00 0.00 30.78 4.02
704 880 3.619233 CGCTTCCGGGTAATATTTTGG 57.381 47.619 0.00 0.00 0.00 3.28
722 898 0.108472 GTGTACTTCCCTACCACCGC 60.108 60.000 0.00 0.00 0.00 5.68
770 946 1.153862 CTCTCTCGGTGCTGACTGC 60.154 63.158 0.00 0.00 43.25 4.40
772 948 1.102154 CATCTCTCTCGGTGCTGACT 58.898 55.000 0.00 0.00 0.00 3.41
806 982 2.041762 ATGGCTCCCTCTGCTCCA 59.958 61.111 0.00 0.00 0.00 3.86
841 1022 3.314553 TCGTGTCGTTTTCCTCAGATTC 58.685 45.455 0.00 0.00 0.00 2.52
848 1029 1.402456 CGATCCTCGTGTCGTTTTCCT 60.402 52.381 0.00 0.00 34.72 3.36
900 1118 1.120530 GACTCGGAGGGCCAAGATAA 58.879 55.000 6.18 0.00 0.00 1.75
958 1176 5.142806 AGTGGCCATTTTATATGGAAGGT 57.857 39.130 9.72 0.00 41.64 3.50
961 1179 5.362430 GTGGAAGTGGCCATTTTATATGGAA 59.638 40.000 15.45 0.00 41.64 3.53
994 1213 3.367703 GGAGTTGTTTCGGGTAAGATCGA 60.368 47.826 0.00 0.00 0.00 3.59
995 1214 2.928116 GGAGTTGTTTCGGGTAAGATCG 59.072 50.000 0.00 0.00 0.00 3.69
996 1215 3.934068 TGGAGTTGTTTCGGGTAAGATC 58.066 45.455 0.00 0.00 0.00 2.75
997 1216 4.070009 GTTGGAGTTGTTTCGGGTAAGAT 58.930 43.478 0.00 0.00 0.00 2.40
1014 1233 3.892162 CACGGGGTTGGGGTTGGA 61.892 66.667 0.00 0.00 0.00 3.53
1279 1521 0.999712 AAATCGAGGAACACCCCCAT 59.000 50.000 0.00 0.00 34.66 4.00
1326 1568 0.179067 TGAACTTGAAGGACGCCGTT 60.179 50.000 0.00 0.00 0.00 4.44
1391 1633 1.527736 CGGAACCGAATTCGTTTGTCA 59.472 47.619 25.10 0.00 42.83 3.58
1396 1638 2.385091 CGCCGGAACCGAATTCGTT 61.385 57.895 25.10 18.55 42.83 3.85
1432 1702 4.202253 GCTCCTTTTCTTGAACACCCAATT 60.202 41.667 0.00 0.00 0.00 2.32
1481 1754 1.067060 CAATGGTGAGGCGATCGTCTA 59.933 52.381 24.28 7.39 0.00 2.59
1482 1755 0.179100 CAATGGTGAGGCGATCGTCT 60.179 55.000 24.50 24.50 0.00 4.18
1560 1857 2.103771 CCCAAGATGATCCGTGATGTCT 59.896 50.000 0.00 0.00 0.00 3.41
1587 1884 0.850883 TCCCCTCTTTCCCCTGCAAT 60.851 55.000 0.00 0.00 0.00 3.56
1614 1911 4.321527 GCCTCTTCTTGGACCTTGAAAATG 60.322 45.833 0.00 0.00 0.00 2.32
1621 1918 1.450360 AAGGCCTCTTCTTGGACCTT 58.550 50.000 5.23 0.00 36.76 3.50
1666 1963 3.115892 GAACACCGGCGATCGCAA 61.116 61.111 38.00 0.00 44.11 4.85
1881 2193 9.851686 ATGTTTTCACATATAATCTTGAGCCTA 57.148 29.630 0.00 0.00 42.24 3.93
2061 2380 4.022849 AGTGGACATGTTGCTTTTAGCTTC 60.023 41.667 0.00 0.00 42.97 3.86
2067 2386 1.069049 GCCAGTGGACATGTTGCTTTT 59.931 47.619 15.20 0.00 0.00 2.27
2316 8048 9.477484 CAGTACACATACTTTTTGAGTAAGACT 57.523 33.333 0.00 0.00 43.76 3.24
2331 8065 3.189910 TCGTCCTGACACAGTACACATAC 59.810 47.826 0.00 0.00 0.00 2.39
2337 8071 2.668834 GCTTCTCGTCCTGACACAGTAC 60.669 54.545 0.00 0.00 0.00 2.73
2343 8077 1.181741 AGCTGCTTCTCGTCCTGACA 61.182 55.000 0.00 0.00 0.00 3.58
2351 8085 2.511145 GGAGGCAGCTGCTTCTCG 60.511 66.667 39.17 5.68 45.19 4.04
2362 8096 0.620556 CTAGCTTTGGGAAGGAGGCA 59.379 55.000 0.00 0.00 33.34 4.75
2449 8188 1.219935 GGCCGGAATCCACTACGTT 59.780 57.895 5.05 0.00 0.00 3.99
2453 8192 1.912220 CAAGGGCCGGAATCCACTA 59.088 57.895 5.05 0.00 0.00 2.74
2479 8218 5.535030 AGAAAGATGTAAAAACGGAGCCTTT 59.465 36.000 0.00 0.00 0.00 3.11
2495 8234 6.204882 ACCCTAACAAAACTCGAAGAAAGATG 59.795 38.462 0.00 0.00 34.09 2.90
2502 8242 5.163693 ACACAAACCCTAACAAAACTCGAAG 60.164 40.000 0.00 0.00 0.00 3.79
2547 8289 1.074248 ATTTTCAGGGGCCGTCGTT 59.926 52.632 0.00 0.00 0.00 3.85
2548 8290 1.674322 CATTTTCAGGGGCCGTCGT 60.674 57.895 0.00 0.00 0.00 4.34
2551 8293 0.041090 ATTCCATTTTCAGGGGCCGT 59.959 50.000 0.00 0.00 0.00 5.68
2573 8316 3.862991 GGCTAGGCGGGGAGAACC 61.863 72.222 0.00 0.00 39.11 3.62
2593 8336 6.072119 ACGATACTAGATGCACCATCGAAATA 60.072 38.462 5.58 0.00 44.67 1.40
2594 8337 5.164233 CGATACTAGATGCACCATCGAAAT 58.836 41.667 0.00 0.00 44.67 2.17
2597 8340 3.146847 ACGATACTAGATGCACCATCGA 58.853 45.455 5.58 0.00 44.67 3.59
2600 8343 3.388024 ACCAACGATACTAGATGCACCAT 59.612 43.478 0.00 0.00 0.00 3.55
2603 8346 3.123804 CCACCAACGATACTAGATGCAC 58.876 50.000 0.00 0.00 0.00 4.57
2607 8350 1.340248 CGCCCACCAACGATACTAGAT 59.660 52.381 0.00 0.00 0.00 1.98
2613 8356 1.374885 CACACGCCCACCAACGATA 60.375 57.895 0.00 0.00 0.00 2.92
2635 8378 0.463204 CAGATCCGCCTGAGACACAT 59.537 55.000 0.00 0.00 36.29 3.21
2644 8387 0.036010 CACCAAAGACAGATCCGCCT 60.036 55.000 0.00 0.00 0.00 5.52
2671 8414 1.135139 ACGAATGACGACCAGATCCAG 59.865 52.381 0.00 0.00 45.77 3.86
2680 8423 1.830633 CGAACGTAGACGAATGACGAC 59.169 52.381 9.41 0.00 45.77 4.34
2685 8431 2.839026 GACACTCGAACGTAGACGAATG 59.161 50.000 9.41 15.46 40.64 2.67
2686 8432 2.740981 AGACACTCGAACGTAGACGAAT 59.259 45.455 9.41 0.00 43.02 3.34
2687 8433 2.138320 AGACACTCGAACGTAGACGAA 58.862 47.619 9.41 0.00 43.02 3.85
2694 8440 3.309388 CAATCTGAAGACACTCGAACGT 58.691 45.455 0.00 0.00 0.00 3.99
2701 8447 5.511386 AAAGGATCCAATCTGAAGACACT 57.489 39.130 15.82 0.00 0.00 3.55
2735 8481 1.948145 CAACCGCTACCGATAGAGAGT 59.052 52.381 0.00 0.00 36.29 3.24
2736 8482 2.219458 TCAACCGCTACCGATAGAGAG 58.781 52.381 0.00 0.00 36.29 3.20
2737 8483 2.336945 TCAACCGCTACCGATAGAGA 57.663 50.000 0.00 0.00 36.29 3.10
2741 8487 2.691526 AGAACATCAACCGCTACCGATA 59.308 45.455 0.00 0.00 36.29 2.92
2747 8493 1.804151 GCAACAGAACATCAACCGCTA 59.196 47.619 0.00 0.00 0.00 4.26
2756 8502 5.451908 CATAGAACAAACGCAACAGAACAT 58.548 37.500 0.00 0.00 0.00 2.71
2764 8510 0.885196 GCCCCATAGAACAAACGCAA 59.115 50.000 0.00 0.00 0.00 4.85
2771 8517 1.211949 GTGCTAAGGCCCCATAGAACA 59.788 52.381 12.13 0.89 37.74 3.18
2793 8539 0.731855 GTACACAGTCGGGAAGTCGC 60.732 60.000 0.00 0.00 0.00 5.19
2809 8555 3.495753 CCGGACAAAACTTGGTGTAGTAC 59.504 47.826 0.00 0.00 34.12 2.73
2817 8563 0.821711 TGGAGCCGGACAAAACTTGG 60.822 55.000 5.05 0.00 34.12 3.61
2822 8568 0.821711 CCTTGTGGAGCCGGACAAAA 60.822 55.000 5.05 0.57 31.83 2.44
2837 8583 2.353889 CGCTGTCATCATTCTTCCCTTG 59.646 50.000 0.00 0.00 0.00 3.61
2838 8584 2.636830 CGCTGTCATCATTCTTCCCTT 58.363 47.619 0.00 0.00 0.00 3.95
2844 8591 2.176273 GCGCCGCTGTCATCATTCT 61.176 57.895 0.00 0.00 0.00 2.40
2846 8593 3.566853 CGCGCCGCTGTCATCATT 61.567 61.111 7.78 0.00 0.00 2.57
2879 8626 2.464865 CTAGCGATGACTACAAGCACC 58.535 52.381 0.00 0.00 36.63 5.01
2904 8651 8.937634 ATAAAAATTACGTTCAGATCCGTAGT 57.062 30.769 0.00 0.00 40.27 2.73
2944 8691 9.947433 ATTCATTTTCAATCATGGTTGTACAAT 57.053 25.926 18.05 11.50 0.00 2.71
3072 8822 7.011482 GTGTGATTTTCCTGTAGTGGATATCAC 59.989 40.741 20.33 20.33 45.87 3.06
3074 8824 6.201044 CGTGTGATTTTCCTGTAGTGGATATC 59.799 42.308 0.00 0.00 35.83 1.63
3075 8825 6.049149 CGTGTGATTTTCCTGTAGTGGATAT 58.951 40.000 0.00 0.00 35.83 1.63
3081 8831 3.067106 CAGCGTGTGATTTTCCTGTAGT 58.933 45.455 0.00 0.00 0.00 2.73
3087 8837 0.598065 AAGGCAGCGTGTGATTTTCC 59.402 50.000 0.00 0.00 0.00 3.13
3089 8839 1.032014 ACAAGGCAGCGTGTGATTTT 58.968 45.000 0.00 0.00 0.00 1.82
3123 8873 4.137543 GAGAACCCATGTTTTGACACTCT 58.862 43.478 0.00 0.00 33.97 3.24
3137 8887 1.364901 GACGTGAACCGAGAACCCA 59.635 57.895 0.00 0.00 40.70 4.51
3146 8896 2.140717 CAACTTAGGTGGACGTGAACC 58.859 52.381 7.97 7.97 36.66 3.62
3148 8898 2.696707 ACTCAACTTAGGTGGACGTGAA 59.303 45.455 0.00 0.00 0.00 3.18
3150 8900 2.814280 ACTCAACTTAGGTGGACGTG 57.186 50.000 0.00 0.00 0.00 4.49
3152 8902 3.504906 TCACTACTCAACTTAGGTGGACG 59.495 47.826 0.00 0.00 0.00 4.79
3164 8914 5.471556 TGTATTTTCCGGTCACTACTCAA 57.528 39.130 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.