AutoCloner

Multiple sequence alignment - TraesCS2A01G417800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS2A01G417800	chr2A	100.000	2532	0	0	1	2532	673451062	673453593	0.000000e+00	4676.0
1	TraesCS2A01G417800	chr2A	87.440	621	54	11	790	1400	672645391	672644785	0.000000e+00	693.0
2	TraesCS2A01G417800	chr2A	87.524	529	49	10	966	1488	178170940	178171457	1.680000e-166	595.0
3	TraesCS2A01G417800	chr2D	94.249	1617	58	16	933	2532	528998745	529000343	0.000000e+00	2438.0
4	TraesCS2A01G417800	chr2D	92.652	626	33	8	790	1403	527648449	527647825	0.000000e+00	889.0
5	TraesCS2A01G417800	chr2D	87.850	535	44	13	966	1489	171444944	171444420	2.150000e-170	608.0
6	TraesCS2A01G417800	chr2D	85.597	486	34	18	486	938	528997999	528998481	6.340000e-131	477.0
7	TraesCS2A01G417800	chr2D	83.632	446	59	10	2	444	528997457	528997891	8.430000e-110	407.0
8	TraesCS2A01G417800	chr2D	100.000	44	0	0	441	484	528997911	528997954	5.810000e-12	82.4
9	TraesCS2A01G417800	chr2B	82.413	1558	122	70	345	1824	628156340	628157823	0.000000e+00	1219.0
10	TraesCS2A01G417800	chr2B	87.983	699	50	14	1853	2532	628157889	628158572	0.000000e+00	795.0
11	TraesCS2A01G417800	chr2B	89.871	622	43	10	786	1400	625009317	625008709	0.000000e+00	782.0
12	TraesCS2A01G417800	chr2B	88.491	530	45	10	966	1489	225691589	225692108	5.950000e-176	627.0
13	TraesCS2A01G417800	chr2B	86.404	559	59	9	1982	2532	625260715	625260166	1.680000e-166	595.0
14	TraesCS2A01G417800	chr2B	85.249	461	44	12	1406	1852	625261294	625260844	1.070000e-123	453.0
15	TraesCS2A01G417800	chr2B	79.784	371	55	12	1	358	628155606	628155969	4.180000e-63	252.0
16	TraesCS2A01G417800	chr7D	90.351	798	40	14	1075	1853	134467046	134466267	0.000000e+00	1013.0
17	TraesCS2A01G417800	chr7D	90.079	252	16	6	1853	2104	134466235	134465993	4.060000e-83	318.0
18	TraesCS2A01G417800	chr7A	91.727	556	36	6	1075	1625	133627440	133626890	0.000000e+00	763.0
19	TraesCS2A01G417800	chr7A	88.235	255	19	6	1853	2104	133626646	133626400	6.850000e-76	294.0
20	TraesCS2A01G417800	chr7A	86.574	216	12	6	1654	1853	133626892	133626678	3.280000e-54	222.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS2A01G417800	chr2A	673451062	673453593	2531	False	4676.000000	4676	100.000000	1	2532	1	chr2A.!!$F2	2531
1	TraesCS2A01G417800	chr2A	672644785	672645391	606	True	693.000000	693	87.440000	790	1400	1	chr2A.!!$R1	610
2	TraesCS2A01G417800	chr2A	178170940	178171457	517	False	595.000000	595	87.524000	966	1488	1	chr2A.!!$F1	522
3	TraesCS2A01G417800	chr2D	527647825	527648449	624	True	889.000000	889	92.652000	790	1403	1	chr2D.!!$R2	613
4	TraesCS2A01G417800	chr2D	528997457	529000343	2886	False	851.100000	2438	90.869500	2	2532	4	chr2D.!!$F1	2530
5	TraesCS2A01G417800	chr2D	171444420	171444944	524	True	608.000000	608	87.850000	966	1489	1	chr2D.!!$R1	523
6	TraesCS2A01G417800	chr2B	625008709	625009317	608	True	782.000000	782	89.871000	786	1400	1	chr2B.!!$R1	614
7	TraesCS2A01G417800	chr2B	628155606	628158572	2966	False	755.333333	1219	83.393333	1	2532	3	chr2B.!!$F2	2531
8	TraesCS2A01G417800	chr2B	225691589	225692108	519	False	627.000000	627	88.491000	966	1489	1	chr2B.!!$F1	523
9	TraesCS2A01G417800	chr2B	625260166	625261294	1128	True	524.000000	595	85.826500	1406	2532	2	chr2B.!!$R2	1126
10	TraesCS2A01G417800	chr7D	134465993	134467046	1053	True	665.500000	1013	90.215000	1075	2104	2	chr7D.!!$R1	1029
11	TraesCS2A01G417800	chr7A	133626400	133627440	1040	True	426.333333	763	88.845333	1075	2104	3	chr7A.!!$R1	1029

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
251	264	0.820074	ACCCAAACAAATCCGTGCGA	60.82	50.0	0.0	0.0	0.0	5.1	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2162	3141	3.553095	AACAGGCCTCAAGCGACCC	62.553	63.158	0.0	0.0	45.17	4.46	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
18	19	2.741985	CGCGTCAGCCATGGTTGA	60.742	61.111	25.76	25.76	41.18	3.18
35	36	1.291109	TGAAGGGCGGGAGGATTTTA	58.709	50.000	0.00	0.00	0.00	1.52
43	45	2.485657	GCGGGAGGATTTTAGGGAGAAG	60.486	54.545	0.00	0.00	0.00	2.85
134	147	2.600388	CGCGAGGAACACAAACTCA	58.400	52.632	0.00	0.00	0.00	3.41
141	154	4.201910	CGAGGAACACAAACTCAACACAAT	60.202	41.667	0.00	0.00	0.00	2.71
157	170	3.181461	ACACAATTTTGGGCCGAAAATGA	60.181	39.130	31.78	11.77	36.01	2.57
161	174	1.988293	TTTGGGCCGAAAATGAGTCA	58.012	45.000	10.88	0.00	0.00	3.41
167	180	2.552315	GGCCGAAAATGAGTCAAAGTGA	59.448	45.455	0.00	0.00	0.00	3.41
176	189	5.914085	ATGAGTCAAAGTGAACGAGAAAG	57.086	39.130	0.00	0.00	0.00	2.62
178	191	3.531538	AGTCAAAGTGAACGAGAAAGCA	58.468	40.909	0.00	0.00	0.00	3.91
180	193	2.872245	TCAAAGTGAACGAGAAAGCAGG	59.128	45.455	0.00	0.00	0.00	4.85
189	202	1.135575	CGAGAAAGCAGGCATTTGTCC	60.136	52.381	0.00	0.00	28.75	4.02
195	208	1.000274	AGCAGGCATTTGTCCGTTTTC	60.000	47.619	0.00	0.00	0.00	2.29
247	260	1.324383	GTGGACCCAAACAAATCCGT	58.676	50.000	0.00	0.00	33.63	4.69
251	264	0.820074	ACCCAAACAAATCCGTGCGA	60.820	50.000	0.00	0.00	0.00	5.10
272	285	1.500396	GAAATGGGTCGGCGTGTTC	59.500	57.895	6.85	0.00	0.00	3.18
273	286	1.228003	AAATGGGTCGGCGTGTTCA	60.228	52.632	6.85	2.03	0.00	3.18
288	302	3.181514	CGTGTTCAAGTTGACCGAAGTTT	60.182	43.478	4.68	0.00	0.00	2.66
289	303	4.340263	GTGTTCAAGTTGACCGAAGTTTC	58.660	43.478	4.68	0.00	0.00	2.78
329	343	5.103855	TCCTCCTTGTTTCTCCCTTTGTAAA	60.104	40.000	0.00	0.00	0.00	2.01
369	763	4.165760	TCATCTGATATCATGGACTGCCT	58.834	43.478	5.72	0.00	34.31	4.75
387	781	8.666573	GGACTGCCTTTTTATAGTTTCTTCTAC	58.333	37.037	0.00	0.00	0.00	2.59
439	837	3.073144	TGAAAAAGAAAAGGCGAACCG	57.927	42.857	0.00	0.00	42.76	4.44
516	983	8.088365	TGTTATACTCATGAGCGCACTTATAAT	58.912	33.333	22.83	0.99	0.00	1.28
519	986	6.683974	ACTCATGAGCGCACTTATAATTTT	57.316	33.333	22.83	0.00	0.00	1.82
544	1011	5.527951	TGTTCCTGCAAATACAATTGACAC	58.472	37.500	13.59	0.00	31.84	3.67
551	1018	6.212235	TGCAAATACAATTGACACGTCATTT	58.788	32.000	13.59	1.24	39.64	2.32
696	1179	1.000938	GTTTCTCCAGCTTGCAACCAG	60.001	52.381	0.00	0.00	0.00	4.00
717	1201	5.046663	CCAGTGTATTTTACCCAATTTGCCT	60.047	40.000	0.00	0.00	0.00	4.75
726	1210	2.104622	ACCCAATTTGCCTCAACCAAAG	59.895	45.455	0.00	0.00	35.84	2.77
727	1211	2.104622	CCCAATTTGCCTCAACCAAAGT	59.895	45.455	0.00	0.00	35.84	2.66
728	1212	3.323403	CCCAATTTGCCTCAACCAAAGTA	59.677	43.478	0.00	0.00	35.84	2.24
729	1213	4.559153	CCAATTTGCCTCAACCAAAGTAG	58.441	43.478	0.00	0.00	35.84	2.57
730	1214	4.559153	CAATTTGCCTCAACCAAAGTAGG	58.441	43.478	0.00	0.00	35.84	3.18
731	1215	3.586470	TTTGCCTCAACCAAAGTAGGA	57.414	42.857	0.00	0.00	0.00	2.94
732	1216	2.859165	TGCCTCAACCAAAGTAGGAG	57.141	50.000	0.00	0.00	0.00	3.69
733	1217	2.054799	TGCCTCAACCAAAGTAGGAGT	58.945	47.619	0.00	0.00	0.00	3.85
734	1218	3.244582	TGCCTCAACCAAAGTAGGAGTA	58.755	45.455	0.00	0.00	0.00	2.59
735	1219	3.007614	TGCCTCAACCAAAGTAGGAGTAC	59.992	47.826	0.00	0.00	0.00	2.73
784	1282	8.733857	AAATAAAAATCTGAGCGAAACAGAAG	57.266	30.769	9.79	0.00	45.44	2.85
833	1334	2.823829	GCGCCACGTCATCAATCCC	61.824	63.158	0.00	0.00	0.00	3.85
882	1384	2.611292	CCTTCTGATCTCAATCCAACGC	59.389	50.000	0.00	0.00	0.00	4.84
911	1413	3.872728	CGTCTCGCGGATCGACCA	61.873	66.667	6.13	0.00	43.16	4.02
921	1423	1.098050	GGATCGACCAAGCAAAGCAT	58.902	50.000	0.00	0.00	38.79	3.79
942	1706	3.420482	CCTCCCGCCCCCAAATCT	61.420	66.667	0.00	0.00	0.00	2.40
984	1759	1.479757	CCCCATATAAACCAACCCCCG	60.480	57.143	0.00	0.00	0.00	5.73
1050	1838	1.194218	AGCAGCTCCTCTTCTTCCTC	58.806	55.000	0.00	0.00	0.00	3.71
1051	1839	0.177836	GCAGCTCCTCTTCTTCCTCC	59.822	60.000	0.00	0.00	0.00	4.30
1052	1840	0.829990	CAGCTCCTCTTCTTCCTCCC	59.170	60.000	0.00	0.00	0.00	4.30
1281	2077	4.452825	AGATCTTCCTCGAGAACGTCATA	58.547	43.478	15.71	0.00	40.69	2.15
1521	2340	3.855379	CCATCATGCGTTCAATGAAACTG	59.145	43.478	0.00	0.00	0.00	3.16
1522	2341	4.478699	CATCATGCGTTCAATGAAACTGT	58.521	39.130	0.00	0.00	0.00	3.55
1542	2361	4.836825	TGTTCTGATCCTGAATTCTGACC	58.163	43.478	13.45	0.00	0.00	4.02
1557	2376	3.141398	TCTGACCAAATGCTTCAGTGAC	58.859	45.455	0.00	0.00	38.35	3.67
2152	3131	9.643693	AACATTAAAATTGGTCACTGATCATTC	57.356	29.630	0.00	0.00	0.00	2.67
2153	3132	8.805175	ACATTAAAATTGGTCACTGATCATTCA	58.195	29.630	0.00	0.00	0.00	2.57
2154	3133	9.811995	CATTAAAATTGGTCACTGATCATTCAT	57.188	29.630	0.00	0.00	0.00	2.57
2156	3135	9.859427	TTAAAATTGGTCACTGATCATTCATTC	57.141	29.630	0.00	0.00	0.00	2.67
2162	3141	2.289820	CACTGATCATTCATTCCTGCGG	59.710	50.000	0.00	0.00	0.00	5.69
2247	3229	2.945440	GCCACCACCATTGCTGATTAGA	60.945	50.000	0.00	0.00	0.00	2.10
2350	3333	3.320541	TGACAATTTCGGCCAACAATCTT	59.679	39.130	2.24	0.00	0.00	2.40
2362	3345	6.322491	GGCCAACAATCTTACATCTGTTTAC	58.678	40.000	0.00	0.00	29.70	2.01
2365	3348	8.673711	GCCAACAATCTTACATCTGTTTACATA	58.326	33.333	0.00	0.00	29.70	2.29
2386	3369	7.497595	ACATATTCTTTCGACAGGCTATTACA	58.502	34.615	0.00	0.00	0.00	2.41
2390	3373	6.903883	TCTTTCGACAGGCTATTACAAATC	57.096	37.500	0.00	0.00	0.00	2.17

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
7	8	2.361610	CGCCCTTCAACCATGGCT	60.362	61.111	13.04	0.00	41.80	4.75
15	16	0.407918	AAAATCCTCCCGCCCTTCAA	59.592	50.000	0.00	0.00	0.00	2.69
16	17	1.211949	CTAAAATCCTCCCGCCCTTCA	59.788	52.381	0.00	0.00	0.00	3.02
18	19	0.551396	CCTAAAATCCTCCCGCCCTT	59.449	55.000	0.00	0.00	0.00	3.95
35	36	0.995024	CATTCCCACCACTTCTCCCT	59.005	55.000	0.00	0.00	0.00	4.20
43	45	2.094675	CACCATCTTCATTCCCACCAC	58.905	52.381	0.00	0.00	0.00	4.16
69	71	1.379977	CCCCAGGCTCGTCAGACTA	60.380	63.158	0.00	0.00	34.70	2.59
72	74	2.363018	CTCCCCAGGCTCGTCAGA	60.363	66.667	0.00	0.00	0.00	3.27
110	123	0.389817	TTGTGTTCCTCGCGGAGATG	60.390	55.000	6.13	0.00	41.25	2.90
111	124	0.320374	TTTGTGTTCCTCGCGGAGAT	59.680	50.000	6.13	0.00	41.25	2.75
113	126	0.600255	AGTTTGTGTTCCTCGCGGAG	60.600	55.000	6.13	2.01	41.25	4.63
120	133	5.659440	AATTGTGTTGAGTTTGTGTTCCT	57.341	34.783	0.00	0.00	0.00	3.36
124	137	4.934602	CCCAAAATTGTGTTGAGTTTGTGT	59.065	37.500	0.00	0.00	32.06	3.72
125	138	4.201802	GCCCAAAATTGTGTTGAGTTTGTG	60.202	41.667	0.00	0.00	32.06	3.33
126	139	3.938334	GCCCAAAATTGTGTTGAGTTTGT	59.062	39.130	0.00	0.00	32.06	2.83
127	140	3.312146	GGCCCAAAATTGTGTTGAGTTTG	59.688	43.478	0.00	0.00	33.32	2.93
130	143	1.068434	CGGCCCAAAATTGTGTTGAGT	59.932	47.619	0.00	0.00	0.00	3.41
133	146	2.231215	TTCGGCCCAAAATTGTGTTG	57.769	45.000	0.00	0.00	0.00	3.33
134	147	2.990066	TTTCGGCCCAAAATTGTGTT	57.010	40.000	0.00	0.00	0.00	3.32
141	154	2.311463	TGACTCATTTTCGGCCCAAAA	58.689	42.857	10.84	10.84	0.00	2.44
157	170	3.531538	TGCTTTCTCGTTCACTTTGACT	58.468	40.909	0.00	0.00	0.00	3.41
161	174	1.604278	GCCTGCTTTCTCGTTCACTTT	59.396	47.619	0.00	0.00	0.00	2.66
167	180	1.956477	ACAAATGCCTGCTTTCTCGTT	59.044	42.857	0.00	0.00	0.00	3.85
176	189	1.418373	GAAAACGGACAAATGCCTGC	58.582	50.000	0.00	0.00	0.00	4.85
178	191	1.265905	GACGAAAACGGACAAATGCCT	59.734	47.619	0.00	0.00	0.00	4.75
180	193	1.314581	CGACGAAAACGGACAAATGC	58.685	50.000	0.00	0.00	0.00	3.56
189	202	4.344109	AACGCGCCGACGAAAACG	62.344	61.111	5.73	0.00	43.93	3.60
221	234	0.038310	TGTTTGGGTCCACACACACA	59.962	50.000	5.00	0.00	37.59	3.72
225	238	2.035632	GGATTTGTTTGGGTCCACACA	58.964	47.619	5.00	5.00	35.20	3.72
226	239	1.000717	CGGATTTGTTTGGGTCCACAC	60.001	52.381	0.00	0.00	0.00	3.82
227	240	1.323412	CGGATTTGTTTGGGTCCACA	58.677	50.000	0.00	0.00	0.00	4.17
229	242	1.323412	CACGGATTTGTTTGGGTCCA	58.677	50.000	0.00	0.00	0.00	4.02
247	260	2.030401	CCGACCCATTTCGTTCGCA	61.030	57.895	0.00	0.00	37.29	5.10
251	264	2.031465	ACGCCGACCCATTTCGTT	59.969	55.556	0.00	0.00	37.29	3.85
272	285	2.287009	GCCAGAAACTTCGGTCAACTTG	60.287	50.000	0.00	0.00	0.00	3.16
273	286	1.947456	GCCAGAAACTTCGGTCAACTT	59.053	47.619	0.00	0.00	0.00	2.66
288	302	3.214328	GAGGAAACTTTGACAAGCCAGA	58.786	45.455	0.00	0.00	44.43	3.86
289	303	2.294512	GGAGGAAACTTTGACAAGCCAG	59.705	50.000	0.00	0.00	44.43	4.85
365	759	8.161425	ACAGGTAGAAGAAACTATAAAAAGGCA	58.839	33.333	0.00	0.00	0.00	4.75
387	781	9.255304	GCTCTAAATTATCTCTAACAGAACAGG	57.745	37.037	0.00	0.00	33.62	4.00
439	837	5.601662	TCACATCGTTTCCTAATCTCCATC	58.398	41.667	0.00	0.00	0.00	3.51
484	905	6.019075	GTGCGCTCATGAGTATAACAAATACA	60.019	38.462	23.38	3.90	0.00	2.29
485	906	6.201044	AGTGCGCTCATGAGTATAACAAATAC	59.799	38.462	23.38	8.72	0.00	1.89
486	907	6.280643	AGTGCGCTCATGAGTATAACAAATA	58.719	36.000	23.38	0.00	0.00	1.40
519	986	6.478344	GTGTCAATTGTATTTGCAGGAACAAA	59.522	34.615	5.13	0.00	43.27	2.83
523	990	4.277174	ACGTGTCAATTGTATTTGCAGGAA	59.723	37.500	5.13	0.00	0.00	3.36
665	1135	4.015084	AGCTGGAGAAACAGAATGGAATG	58.985	43.478	0.00	0.00	43.62	2.67
676	1148	1.000938	CTGGTTGCAAGCTGGAGAAAC	60.001	52.381	27.31	0.00	0.00	2.78
696	1179	6.031751	TGAGGCAAATTGGGTAAAATACAC	57.968	37.500	0.00	0.00	0.00	2.90
717	1201	6.309357	TCACTAGTACTCCTACTTTGGTTGA	58.691	40.000	0.00	0.00	34.79	3.18
726	1210	6.430616	ACAGTCTGTTTCACTAGTACTCCTAC	59.569	42.308	0.00	0.00	0.00	3.18
727	1211	6.540995	ACAGTCTGTTTCACTAGTACTCCTA	58.459	40.000	0.00	0.00	0.00	2.94
728	1212	5.386924	ACAGTCTGTTTCACTAGTACTCCT	58.613	41.667	0.00	0.00	0.00	3.69
729	1213	5.708877	ACAGTCTGTTTCACTAGTACTCC	57.291	43.478	0.00	0.00	0.00	3.85
730	1214	9.525409	TTTTTACAGTCTGTTTCACTAGTACTC	57.475	33.333	11.54	0.00	0.00	2.59
759	1255	7.327032	GCTTCTGTTTCGCTCAGATTTTTATTT	59.673	33.333	5.24	0.00	40.83	1.40
760	1256	6.803807	GCTTCTGTTTCGCTCAGATTTTTATT	59.196	34.615	5.24	0.00	40.83	1.40
761	1257	6.072508	TGCTTCTGTTTCGCTCAGATTTTTAT	60.073	34.615	5.24	0.00	40.83	1.40
767	1265	2.462456	TGCTTCTGTTTCGCTCAGAT	57.538	45.000	5.24	0.00	40.83	2.90
774	1272	3.730715	GGTTGTTTCATGCTTCTGTTTCG	59.269	43.478	0.00	0.00	0.00	3.46
784	1282	0.249657	TTTGGGCGGTTGTTTCATGC	60.250	50.000	0.00	0.00	0.00	4.06
882	1384	2.105128	GAGACGGTGGAGATGCGG	59.895	66.667	0.00	0.00	0.00	5.69
911	1413	0.033699	GGGAGGGAGATGCTTTGCTT	60.034	55.000	0.00	0.00	0.00	3.91
984	1759	1.738346	GATTGGGGATTTGAGGGCGC	61.738	60.000	0.00	0.00	0.00	6.53
1050	1838	1.221840	CCGAGGGAGTGTGATTGGG	59.778	63.158	0.00	0.00	0.00	4.12
1051	1839	0.176680	CTCCGAGGGAGTGTGATTGG	59.823	60.000	3.45	0.00	44.25	3.16
1052	1840	3.748863	CTCCGAGGGAGTGTGATTG	57.251	57.895	3.45	0.00	44.25	2.67
1521	2340	4.836825	TGGTCAGAATTCAGGATCAGAAC	58.163	43.478	8.44	0.00	0.00	3.01
1522	2341	5.503634	TTGGTCAGAATTCAGGATCAGAA	57.496	39.130	8.44	0.00	0.00	3.02
1542	2361	3.842428	CGATTTCGTCACTGAAGCATTTG	59.158	43.478	0.00	0.00	34.11	2.32
1601	2467	8.547069	GCACAGCTATACAATCTAAAGAAGAAG	58.453	37.037	0.00	0.00	37.89	2.85
1602	2468	8.040727	TGCACAGCTATACAATCTAAAGAAGAA	58.959	33.333	0.00	0.00	37.89	2.52
1603	2469	7.555965	TGCACAGCTATACAATCTAAAGAAGA	58.444	34.615	0.00	0.00	39.02	2.87
1604	2470	7.776933	TGCACAGCTATACAATCTAAAGAAG	57.223	36.000	0.00	0.00	0.00	2.85
2090	3069	4.346418	TGGGAATTTGGCAAAACATACACT	59.654	37.500	17.70	0.00	0.00	3.55
2162	3141	3.553095	AACAGGCCTCAAGCGACCC	62.553	63.158	0.00	0.00	45.17	4.46
2350	3333	9.863845	TGTCGAAAGAATATGTAAACAGATGTA	57.136	29.630	0.00	0.00	45.01	2.29
2362	3345	7.946655	TGTAATAGCCTGTCGAAAGAATATG	57.053	36.000	3.47	0.00	45.01	1.78
2365	3348	7.254455	CGATTTGTAATAGCCTGTCGAAAGAAT	60.254	37.037	3.47	0.00	45.01	2.40
2386	3369	6.036735	CACGTGGTCAGGTAATAAATCGATTT	59.963	38.462	25.48	25.48	0.00	2.17
2390	3373	4.426416	TCACGTGGTCAGGTAATAAATCG	58.574	43.478	17.00	0.00	0.00	3.34

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.