Multiple sequence alignment - TraesCS2A01G416700

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G416700 chr2A 100.000 4300 0 0 1 4300 672844492 672840193 0.000000e+00 7941.0
1 TraesCS2A01G416700 chr2A 91.743 327 26 1 1 327 121289158 121288833 1.820000e-123 453.0
2 TraesCS2A01G416700 chr2A 85.897 78 7 3 1653 1726 151816239 151816162 3.560000e-11 80.5
3 TraesCS2A01G416700 chr2B 91.233 3308 179 51 452 3693 625935079 625931817 0.000000e+00 4399.0
4 TraesCS2A01G416700 chr2B 82.857 315 24 12 3843 4128 625927863 625927550 5.520000e-64 255.0
5 TraesCS2A01G416700 chr2B 93.617 141 4 4 3718 3857 625931562 625931426 5.640000e-49 206.0
6 TraesCS2A01G416700 chr2B 88.312 154 9 1 4156 4300 625927467 625927314 4.420000e-40 176.0
7 TraesCS2A01G416700 chr2B 96.429 56 1 1 1678 1733 377660230 377660176 1.650000e-14 91.6
8 TraesCS2A01G416700 chr2D 90.041 3374 202 70 413 3725 528085086 528081786 0.000000e+00 4246.0
9 TraesCS2A01G416700 chr2D 89.979 479 35 4 3727 4200 528081699 528081229 1.320000e-169 606.0
10 TraesCS2A01G416700 chr2D 93.814 97 6 0 4204 4300 528080742 528080646 3.460000e-31 147.0
11 TraesCS2A01G416700 chr6A 93.168 322 20 2 1 322 118285379 118285060 5.030000e-129 472.0
12 TraesCS2A01G416700 chr3A 92.547 322 23 1 1 322 648548170 648547850 1.090000e-125 460.0
13 TraesCS2A01G416700 chrUn 92.547 322 21 3 3 324 399417271 399416953 3.920000e-125 459.0
14 TraesCS2A01G416700 chrUn 92.547 322 21 3 3 324 399418814 399418496 3.920000e-125 459.0
15 TraesCS2A01G416700 chr7A 92.547 322 21 3 3 324 598589488 598589806 3.920000e-125 459.0
16 TraesCS2A01G416700 chr7A 92.547 322 21 3 3 324 598689744 598690062 3.920000e-125 459.0
17 TraesCS2A01G416700 chr7A 85.714 84 7 3 1653 1732 623050574 623050656 2.760000e-12 84.2
18 TraesCS2A01G416700 chr1A 92.523 321 23 1 4 324 529255159 529254840 3.920000e-125 459.0
19 TraesCS2A01G416700 chr1A 92.212 321 24 1 1 321 277406961 277407280 1.820000e-123 453.0
20 TraesCS2A01G416700 chr6D 89.024 82 5 4 1653 1732 62106543 62106464 9.840000e-17 99.0
21 TraesCS2A01G416700 chr4B 87.342 79 10 0 1034 1112 660110024 660109946 1.650000e-14 91.6
22 TraesCS2A01G416700 chr4B 92.063 63 4 1 1678 1740 415874217 415874278 2.130000e-13 87.9
23 TraesCS2A01G416700 chr3B 96.429 56 1 1 1677 1732 404001434 404001488 1.650000e-14 91.6
24 TraesCS2A01G416700 chr3B 77.246 167 24 8 1577 1732 253108224 253108387 7.660000e-13 86.1
25 TraesCS2A01G416700 chr5A 88.732 71 8 0 1042 1112 699470236 699470166 2.130000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G416700 chr2A 672840193 672844492 4299 True 7941.000000 7941 100.00000 1 4300 1 chr2A.!!$R3 4299
1 TraesCS2A01G416700 chr2B 625927314 625935079 7765 True 1259.000000 4399 89.00475 452 4300 4 chr2B.!!$R2 3848
2 TraesCS2A01G416700 chr2D 528080646 528085086 4440 True 1666.333333 4246 91.27800 413 4300 3 chr2D.!!$R1 3887
3 TraesCS2A01G416700 chrUn 399416953 399418814 1861 True 459.000000 459 92.54700 3 324 2 chrUn.!!$R1 321

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
280 281 0.040067 GGCTTGTGTTTTCTGGAGCG 60.040 55.0 0.0 0.0 0.0 5.03 F
1124 1228 0.179108 CACTCCGGGATCGAAGGTTC 60.179 60.0 0.0 0.0 39.0 3.62 F
1520 1661 0.188342 ACAGGGTTGGTGGCAAATCT 59.812 50.0 0.0 0.0 0.0 2.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1316 1433 0.249073 CGATCAGTCCATCACCCGTC 60.249 60.000 0.0 0.0 0.00 4.79 R
2322 2468 0.108615 ATCGTTCCGAGCAAGTCAGG 60.109 55.000 0.0 0.0 39.91 3.86 R
3515 3667 1.270571 TGGCAGCATACGAGAACACAA 60.271 47.619 0.0 0.0 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
51 52 2.983229 GCTCCAGCTTCAAGAATGAGA 58.017 47.619 0.00 0.00 36.78 3.27
58 59 6.491062 TCCAGCTTCAAGAATGAGAAATTTGA 59.509 34.615 0.00 0.00 36.78 2.69
85 86 8.689061 TGGAAATGATCTATTTGATTGGTTGAG 58.311 33.333 7.55 0.00 39.06 3.02
90 91 3.855599 TCTATTTGATTGGTTGAGGGGGA 59.144 43.478 0.00 0.00 0.00 4.81
134 135 1.151908 GGTGGCAGTGGTGGGTAAA 59.848 57.895 0.00 0.00 0.00 2.01
137 138 1.967779 GTGGCAGTGGTGGGTAAATTT 59.032 47.619 0.00 0.00 0.00 1.82
149 150 4.393990 GTGGGTAAATTTCACCTAACTCCG 59.606 45.833 11.15 0.00 36.25 4.63
155 156 1.640917 TTCACCTAACTCCGGCTTCT 58.359 50.000 0.00 0.00 0.00 2.85
280 281 0.040067 GGCTTGTGTTTTCTGGAGCG 60.040 55.000 0.00 0.00 0.00 5.03
301 302 4.573900 CGGAGCTGAATTATAAGGAGCAT 58.426 43.478 12.98 2.38 31.80 3.79
324 325 2.226674 GCAGTCCCAAACAAGCTCTTAC 59.773 50.000 0.00 0.00 0.00 2.34
326 327 4.802918 GCAGTCCCAAACAAGCTCTTACTA 60.803 45.833 0.00 0.00 0.00 1.82
327 328 4.932200 CAGTCCCAAACAAGCTCTTACTAG 59.068 45.833 0.00 0.00 0.00 2.57
328 329 3.685272 GTCCCAAACAAGCTCTTACTAGC 59.315 47.826 0.00 0.00 43.11 3.42
332 384 4.563580 CCAAACAAGCTCTTACTAGCCTCA 60.564 45.833 0.00 0.00 43.86 3.86
339 391 5.241662 AGCTCTTACTAGCCTCAAAAAGTG 58.758 41.667 0.00 0.00 43.86 3.16
345 397 4.338879 ACTAGCCTCAAAAAGTGCATCAT 58.661 39.130 0.00 0.00 0.00 2.45
346 398 3.587797 AGCCTCAAAAAGTGCATCATG 57.412 42.857 0.00 0.00 0.00 3.07
347 399 1.997606 GCCTCAAAAAGTGCATCATGC 59.002 47.619 1.35 1.35 45.29 4.06
352 404 2.991190 CAAAAAGTGCATCATGCTGGAC 59.009 45.455 11.84 12.70 45.31 4.02
354 406 3.354948 AAAGTGCATCATGCTGGACTA 57.645 42.857 21.75 0.00 45.70 2.59
355 407 3.354948 AAGTGCATCATGCTGGACTAA 57.645 42.857 21.75 0.00 45.70 2.24
359 411 3.441572 GTGCATCATGCTGGACTAACTTT 59.558 43.478 11.84 0.00 45.31 2.66
360 412 3.441222 TGCATCATGCTGGACTAACTTTG 59.559 43.478 11.84 0.00 45.31 2.77
361 413 3.691118 GCATCATGCTGGACTAACTTTGA 59.309 43.478 1.02 0.00 40.96 2.69
362 414 4.337555 GCATCATGCTGGACTAACTTTGAT 59.662 41.667 1.02 0.00 40.96 2.57
363 415 5.732528 GCATCATGCTGGACTAACTTTGATG 60.733 44.000 1.02 0.00 40.96 3.07
364 416 3.691118 TCATGCTGGACTAACTTTGATGC 59.309 43.478 0.00 0.00 0.00 3.91
368 420 4.261801 GCTGGACTAACTTTGATGCCTTA 58.738 43.478 0.00 0.00 0.00 2.69
370 422 5.163713 GCTGGACTAACTTTGATGCCTTAAG 60.164 44.000 0.00 0.00 0.00 1.85
373 425 5.938125 GGACTAACTTTGATGCCTTAAGACA 59.062 40.000 3.36 0.00 0.00 3.41
374 426 6.128254 GGACTAACTTTGATGCCTTAAGACAC 60.128 42.308 3.36 0.00 0.00 3.67
375 427 5.705905 ACTAACTTTGATGCCTTAAGACACC 59.294 40.000 3.36 0.00 0.00 4.16
378 430 5.246307 ACTTTGATGCCTTAAGACACCTAC 58.754 41.667 3.36 0.00 0.00 3.18
379 431 3.906720 TGATGCCTTAAGACACCTACC 57.093 47.619 3.36 0.00 0.00 3.18
380 432 3.450904 TGATGCCTTAAGACACCTACCT 58.549 45.455 3.36 0.00 0.00 3.08
381 433 3.844211 TGATGCCTTAAGACACCTACCTT 59.156 43.478 3.36 0.00 0.00 3.50
382 434 4.288626 TGATGCCTTAAGACACCTACCTTT 59.711 41.667 3.36 0.00 0.00 3.11
383 435 4.015872 TGCCTTAAGACACCTACCTTTG 57.984 45.455 3.36 0.00 0.00 2.77
384 436 3.244770 TGCCTTAAGACACCTACCTTTGG 60.245 47.826 3.36 0.00 0.00 3.28
385 437 3.872630 GCCTTAAGACACCTACCTTTGGG 60.873 52.174 3.36 0.00 38.88 4.12
388 440 2.417719 AGACACCTACCTTTGGGTCT 57.582 50.000 0.00 0.00 45.98 3.85
389 441 2.258109 AGACACCTACCTTTGGGTCTC 58.742 52.381 0.00 0.00 45.98 3.36
390 442 1.975680 GACACCTACCTTTGGGTCTCA 59.024 52.381 0.00 0.00 45.98 3.27
392 444 2.781174 ACACCTACCTTTGGGTCTCAAA 59.219 45.455 0.00 0.00 45.98 2.69
402 454 1.797025 GGGTCTCAAAGACACCGAAG 58.203 55.000 9.16 0.00 46.79 3.79
403 455 1.149148 GGTCTCAAAGACACCGAAGC 58.851 55.000 9.16 0.00 46.79 3.86
406 458 0.514691 CTCAAAGACACCGAAGCAGC 59.485 55.000 0.00 0.00 0.00 5.25
407 459 1.205064 CAAAGACACCGAAGCAGCG 59.795 57.895 0.00 0.00 0.00 5.18
408 460 1.227556 AAAGACACCGAAGCAGCGT 60.228 52.632 0.00 0.00 0.00 5.07
410 462 3.112709 GACACCGAAGCAGCGTCC 61.113 66.667 2.43 0.00 0.00 4.79
411 463 3.858868 GACACCGAAGCAGCGTCCA 62.859 63.158 2.43 0.00 0.00 4.02
435 487 2.434185 GCACCATCGGAGAACGCA 60.434 61.111 0.00 0.00 43.58 5.24
439 491 1.218047 CCATCGGAGAACGCAGGAA 59.782 57.895 0.00 0.00 43.58 3.36
484 536 2.083774 CTTCGCTGGATTGCTGGTAAA 58.916 47.619 0.00 0.00 0.00 2.01
499 552 0.238289 GTAAACGGTGTCGGACGAGA 59.762 55.000 3.34 0.00 41.39 4.04
540 593 1.202806 CCAGAAGAGTCAAAGCCACCA 60.203 52.381 0.00 0.00 0.00 4.17
638 702 2.166664 GTGACTCCCCACTATCAGACAC 59.833 54.545 0.00 0.00 34.38 3.67
658 730 1.489649 CCTCTCTCCATCACCAAGCAT 59.510 52.381 0.00 0.00 0.00 3.79
659 731 2.702478 CCTCTCTCCATCACCAAGCATA 59.298 50.000 0.00 0.00 0.00 3.14
666 738 4.009675 TCCATCACCAAGCATAACTGAAC 58.990 43.478 0.00 0.00 0.00 3.18
679 751 3.253838 TGAACCTTCCCCCACCCG 61.254 66.667 0.00 0.00 0.00 5.28
765 837 4.569653 CCACCCTAAAGAATCCACCATCAA 60.570 45.833 0.00 0.00 0.00 2.57
786 873 3.925238 CAGCGCGTAACGGATGGC 61.925 66.667 8.43 0.00 43.93 4.40
833 925 4.095211 GTGGTACTCCCCTAGATAATCCC 58.905 52.174 0.00 0.00 0.00 3.85
839 931 1.549493 CCCCTAGATAATCCCCGACGT 60.549 57.143 0.00 0.00 0.00 4.34
873 965 4.465446 TCCCCTCTCCGAGCCCAG 62.465 72.222 0.00 0.00 0.00 4.45
891 983 3.308530 CCAGAACCAAGCAAAATCGAAC 58.691 45.455 0.00 0.00 0.00 3.95
894 986 0.596082 ACCAAGCAAAATCGAACCGG 59.404 50.000 0.00 0.00 0.00 5.28
961 1053 2.125310 CGGGTGGACGCTAATGCA 60.125 61.111 0.00 0.00 39.64 3.96
988 1080 3.687321 GAAGGGATCTGCAGCGCCA 62.687 63.158 21.35 0.00 0.00 5.69
1124 1228 0.179108 CACTCCGGGATCGAAGGTTC 60.179 60.000 0.00 0.00 39.00 3.62
1131 1235 2.104170 GGGATCGAAGGTTCTGACTCT 58.896 52.381 0.00 0.00 0.00 3.24
1133 1237 2.100087 GGATCGAAGGTTCTGACTCTCC 59.900 54.545 0.00 0.00 0.00 3.71
1138 1242 1.985116 GGTTCTGACTCTCCGCCCT 60.985 63.158 0.00 0.00 0.00 5.19
1141 1245 0.681564 TTCTGACTCTCCGCCCTCTC 60.682 60.000 0.00 0.00 0.00 3.20
1142 1246 2.043852 TGACTCTCCGCCCTCTCC 60.044 66.667 0.00 0.00 0.00 3.71
1175 1279 3.376546 GCTGGAGCTTGATTTGGTTCTAG 59.623 47.826 0.00 0.00 38.21 2.43
1209 1313 2.540361 GGGACGCTGTACTGTACGTATG 60.540 54.545 12.87 5.79 39.16 2.39
1233 1337 3.699038 TGGTAGTTGCTTTGTTGAGCTTT 59.301 39.130 0.00 0.00 43.11 3.51
1234 1338 4.044426 GGTAGTTGCTTTGTTGAGCTTTG 58.956 43.478 0.00 0.00 43.11 2.77
1235 1339 3.874392 AGTTGCTTTGTTGAGCTTTGT 57.126 38.095 0.00 0.00 43.11 2.83
1237 1341 4.672409 AGTTGCTTTGTTGAGCTTTGTAC 58.328 39.130 0.00 0.00 43.11 2.90
1238 1342 4.157656 AGTTGCTTTGTTGAGCTTTGTACA 59.842 37.500 0.00 0.00 43.11 2.90
1241 1345 3.550842 GCTTTGTTGAGCTTTGTACAGGG 60.551 47.826 0.00 0.00 39.57 4.45
1242 1346 3.569194 TTGTTGAGCTTTGTACAGGGA 57.431 42.857 0.00 0.00 0.00 4.20
1243 1347 2.846193 TGTTGAGCTTTGTACAGGGAC 58.154 47.619 0.00 0.00 0.00 4.46
1260 1377 2.261671 CGCTGCCGTAAGTCCTGT 59.738 61.111 0.00 0.00 0.00 4.00
1267 1384 2.756760 TGCCGTAAGTCCTGTAGGTTAG 59.243 50.000 0.00 0.00 36.34 2.34
1297 1414 2.683768 AGAGGCAGGATAACAGGGTAG 58.316 52.381 0.00 0.00 0.00 3.18
1298 1415 2.022918 AGAGGCAGGATAACAGGGTAGT 60.023 50.000 0.00 0.00 0.00 2.73
1301 1418 3.052033 AGGCAGGATAACAGGGTAGTAGT 60.052 47.826 0.00 0.00 0.00 2.73
1303 1420 3.492829 GCAGGATAACAGGGTAGTAGTGC 60.493 52.174 0.00 0.00 0.00 4.40
1305 1422 4.161565 CAGGATAACAGGGTAGTAGTGCAA 59.838 45.833 0.00 0.00 0.00 4.08
1306 1423 4.406003 AGGATAACAGGGTAGTAGTGCAAG 59.594 45.833 0.00 0.00 0.00 4.01
1307 1424 4.443034 GGATAACAGGGTAGTAGTGCAAGG 60.443 50.000 0.00 0.00 0.00 3.61
1309 1426 1.203262 ACAGGGTAGTAGTGCAAGGGA 60.203 52.381 0.00 0.00 0.00 4.20
1310 1427 1.906574 CAGGGTAGTAGTGCAAGGGAA 59.093 52.381 0.00 0.00 0.00 3.97
1312 1429 2.185387 GGGTAGTAGTGCAAGGGAAGA 58.815 52.381 0.00 0.00 0.00 2.87
1313 1430 2.570302 GGGTAGTAGTGCAAGGGAAGAA 59.430 50.000 0.00 0.00 0.00 2.52
1314 1431 3.200165 GGGTAGTAGTGCAAGGGAAGAAT 59.800 47.826 0.00 0.00 0.00 2.40
1315 1432 4.324331 GGGTAGTAGTGCAAGGGAAGAATT 60.324 45.833 0.00 0.00 0.00 2.17
1316 1433 4.636206 GGTAGTAGTGCAAGGGAAGAATTG 59.364 45.833 0.00 0.00 0.00 2.32
1317 1434 4.640771 AGTAGTGCAAGGGAAGAATTGA 57.359 40.909 0.00 0.00 0.00 2.57
1318 1435 4.327680 AGTAGTGCAAGGGAAGAATTGAC 58.672 43.478 0.00 0.00 0.00 3.18
1339 1469 0.811616 GGTGATGGACTGATCGTGGC 60.812 60.000 0.00 0.00 0.00 5.01
1351 1481 1.672881 GATCGTGGCCTGAATTTCTGG 59.327 52.381 15.87 15.87 38.38 3.86
1413 1548 4.578928 TCAGGGCAAAGTAGTTTTCAGTTC 59.421 41.667 0.00 0.00 0.00 3.01
1418 1553 6.349363 GGGCAAAGTAGTTTTCAGTTCTATGG 60.349 42.308 0.00 0.00 0.00 2.74
1426 1561 5.770162 AGTTTTCAGTTCTATGGGGAAGTTG 59.230 40.000 0.00 0.00 0.00 3.16
1437 1572 1.559682 GGGGAAGTTGTAGGATGCAGA 59.440 52.381 0.00 0.00 27.68 4.26
1487 1622 7.211573 TCGTGAATTATAACGATGTATGGGTT 58.788 34.615 6.44 0.00 43.40 4.11
1520 1661 0.188342 ACAGGGTTGGTGGCAAATCT 59.812 50.000 0.00 0.00 0.00 2.40
1562 1703 4.338964 TGATGTTGCAGTCATGTTCTTGTT 59.661 37.500 10.44 0.00 0.00 2.83
1563 1704 4.717233 TGTTGCAGTCATGTTCTTGTTT 57.283 36.364 0.00 0.00 0.00 2.83
1581 1722 6.655003 TCTTGTTTGAAGAACAGGTGGATATC 59.345 38.462 0.00 0.00 0.00 1.63
1626 1767 0.878416 CTAGGCTCTAGGCAGTAGCG 59.122 60.000 6.30 0.00 44.01 4.26
1627 1768 0.472898 TAGGCTCTAGGCAGTAGCGA 59.527 55.000 6.30 0.00 44.01 4.93
1638 1779 1.671850 GCAGTAGCGAAACACCTAGCA 60.672 52.381 0.00 0.00 0.00 3.49
1715 1856 4.813697 GTGGTGGCAAAACACACAATTAAT 59.186 37.500 11.80 0.00 43.08 1.40
1749 1890 6.005583 TCTTTTAGCTTTGACATTGAGCTG 57.994 37.500 15.04 3.21 45.66 4.24
1792 1933 5.355071 TGCAGCTAATGAAAATGGTAGAGTG 59.645 40.000 0.00 0.00 0.00 3.51
1823 1964 5.929697 ACATGATATGTTCATTGGTAGCG 57.070 39.130 0.00 0.00 42.62 4.26
1882 2024 3.775661 AATATTTACTGCACGTTGGGC 57.224 42.857 0.00 0.00 0.00 5.36
1891 2033 1.993369 GCACGTTGGGCTATTGGCTC 61.993 60.000 0.10 0.00 42.93 4.70
1914 2056 5.183713 TCATGCTTTTATGTGTAGCAGCTTT 59.816 36.000 0.00 0.00 46.86 3.51
1991 2137 9.083080 AGCTTTAACTCATTGTTTTGTTGTAAC 57.917 29.630 0.00 0.00 39.89 2.50
2224 2370 5.277825 TCAAAGAACTGCAACCATTTTACG 58.722 37.500 0.00 0.00 0.00 3.18
2305 2451 4.631813 GCAAGAGTGGGTCAGTATTACAAG 59.368 45.833 0.00 0.00 0.00 3.16
2600 2746 7.377766 TCTAAATGACCTGTATGCTTCAAAC 57.622 36.000 0.00 0.00 0.00 2.93
2628 2774 9.158233 GTAAACAGCCATTTGAGTGTTATACTA 57.842 33.333 0.00 0.00 40.53 1.82
2653 2799 8.604640 ATTTGTTGTATGTTTTGAATGATGCA 57.395 26.923 0.00 0.00 0.00 3.96
2672 2818 4.449131 TGCATGCCTCAGAAATCTCTTAG 58.551 43.478 16.68 0.00 0.00 2.18
2749 2895 3.759086 TCTGTTTGGCTTTGTGTTGTACA 59.241 39.130 0.00 0.00 37.56 2.90
2779 2925 2.763448 CGCCCTCCCATTTTCCATAAAA 59.237 45.455 0.00 0.00 38.87 1.52
2780 2926 3.181476 CGCCCTCCCATTTTCCATAAAAG 60.181 47.826 0.00 0.00 37.97 2.27
2811 2957 1.281867 CCCTGTCCATTTGGTGAGCTA 59.718 52.381 0.00 0.00 36.34 3.32
2823 2971 7.255035 CCATTTGGTGAGCTATATTCTTCAGTG 60.255 40.741 0.00 0.00 0.00 3.66
2849 2997 9.144747 GTGCTGATCGTATTTACATATTCATCT 57.855 33.333 0.00 0.00 0.00 2.90
2933 3081 7.004086 TGTAGAGGGAACAACATGAGAAATTT 58.996 34.615 0.00 0.00 0.00 1.82
2976 3124 6.929606 AGTACTACACTCTTTTAAGCCACTTG 59.070 38.462 0.00 0.00 28.33 3.16
2977 3125 5.063880 ACTACACTCTTTTAAGCCACTTGG 58.936 41.667 0.00 0.00 38.53 3.61
2991 3139 4.057406 CCACTTGGCATTTTCACTGAAA 57.943 40.909 0.00 0.00 0.00 2.69
3072 3220 9.886132 AATAGCTAGATTTTCCTTTCGAACTTA 57.114 29.630 0.00 0.00 0.00 2.24
3308 3460 9.231297 TCGAAAGATCTTGTTTGAATTATCCTT 57.769 29.630 9.17 0.00 33.31 3.36
3337 3489 1.069227 GTTCCCTGCTGCAGTTTAACG 60.069 52.381 26.41 11.09 0.00 3.18
3436 3588 4.956085 TGCTGTGTACGCATATAGGAATT 58.044 39.130 10.02 0.00 31.40 2.17
3437 3589 4.749598 TGCTGTGTACGCATATAGGAATTG 59.250 41.667 10.02 0.00 31.40 2.32
3438 3590 4.750098 GCTGTGTACGCATATAGGAATTGT 59.250 41.667 10.02 0.00 0.00 2.71
3439 3591 5.107453 GCTGTGTACGCATATAGGAATTGTC 60.107 44.000 10.02 0.00 0.00 3.18
3498 3650 4.488126 TTGCTCAGTTGTTGCATAGTTC 57.512 40.909 0.00 0.00 36.55 3.01
3515 3667 6.740960 GCATAGTTCTTCAGGCATCAGTATCT 60.741 42.308 0.00 0.00 0.00 1.98
3569 3723 0.445436 CTGTCATCCTTCGCTGCAAC 59.555 55.000 0.00 0.00 0.00 4.17
3579 3733 2.029288 CGCTGCAACGGTCTGATGT 61.029 57.895 0.45 0.00 0.00 3.06
3652 3806 1.003718 AAACCCTGGTCTAGCGCAC 60.004 57.895 11.47 0.00 0.00 5.34
3796 4350 0.441921 GCGCTTGCAGAACTCTCTTC 59.558 55.000 0.00 0.00 38.92 2.87
3880 8703 0.965866 CGTGTGCTACTCCAGAGGGA 60.966 60.000 0.00 0.00 42.29 4.20
3888 8711 0.842635 ACTCCAGAGGGATTGATGGC 59.157 55.000 0.00 0.00 43.91 4.40
3896 8719 7.604722 TCCAGAGGGATTGATGGCTATATATA 58.395 38.462 0.00 0.00 38.64 0.86
4004 8832 1.470098 GCAGTGGATGTAAAGCCTGTG 59.530 52.381 0.00 0.00 0.00 3.66
4014 8868 3.135712 TGTAAAGCCTGTGAGGAACTTCA 59.864 43.478 0.00 0.00 41.55 3.02
4054 8910 8.505625 CGTGAAGTCTTTCTTACTACTAGAAGT 58.494 37.037 0.00 0.00 36.40 3.01
4057 8913 7.706100 AGTCTTTCTTACTACTAGAAGTGGG 57.294 40.000 0.00 0.00 33.49 4.61
4066 8922 9.747293 CTTACTACTAGAAGTGGGCTTAATAAC 57.253 37.037 0.00 0.00 34.61 1.89
4079 8935 5.821470 GGGCTTAATAACTGTTCCCTTCTAC 59.179 44.000 0.00 0.00 0.00 2.59
4108 8964 8.190326 TCCGTATGACATAATACCAGAATCTT 57.810 34.615 0.00 0.00 30.56 2.40
4137 9053 1.201965 GCTTGAATTCAGTTCGCTCCG 60.202 52.381 8.41 0.00 39.80 4.63
4143 9059 0.959553 TTCAGTTCGCTCCGTCTTCT 59.040 50.000 0.00 0.00 0.00 2.85
4144 9060 0.241213 TCAGTTCGCTCCGTCTTCTG 59.759 55.000 0.00 0.00 0.00 3.02
4150 9070 4.157289 AGTTCGCTCCGTCTTCTGTTATAA 59.843 41.667 0.00 0.00 0.00 0.98
4151 9071 4.913335 TCGCTCCGTCTTCTGTTATAAT 57.087 40.909 0.00 0.00 0.00 1.28
4152 9072 4.607955 TCGCTCCGTCTTCTGTTATAATG 58.392 43.478 0.00 0.00 0.00 1.90
4153 9073 4.097437 TCGCTCCGTCTTCTGTTATAATGT 59.903 41.667 0.00 0.00 0.00 2.71
4154 9074 4.804139 CGCTCCGTCTTCTGTTATAATGTT 59.196 41.667 0.00 0.00 0.00 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.520492 CAGCCAAACATTCTCTTTGGTAGT 59.480 41.667 10.76 0.00 46.54 2.73
1 2 4.616835 GCAGCCAAACATTCTCTTTGGTAG 60.617 45.833 10.76 5.85 46.54 3.18
58 59 9.204337 TCAACCAATCAAATAGATCATTTCCAT 57.796 29.630 0.00 0.00 34.49 3.41
65 66 5.448654 CCCCTCAACCAATCAAATAGATCA 58.551 41.667 0.00 0.00 35.39 2.92
85 86 1.001269 CCCCTTCGTTTCTTCCCCC 60.001 63.158 0.00 0.00 0.00 5.40
90 91 2.910977 AGTGGATACCCCTTCGTTTCTT 59.089 45.455 0.00 0.00 35.38 2.52
134 135 2.572104 AGAAGCCGGAGTTAGGTGAAAT 59.428 45.455 5.05 0.00 0.00 2.17
137 138 2.025605 TCTAGAAGCCGGAGTTAGGTGA 60.026 50.000 5.05 0.00 0.00 4.02
142 143 5.479124 AAAAACTCTAGAAGCCGGAGTTA 57.521 39.130 5.05 0.00 45.73 2.24
196 197 4.841246 AGAATCCAAGGTACAACTCTCAGT 59.159 41.667 0.00 0.00 0.00 3.41
200 201 6.936968 AACTAGAATCCAAGGTACAACTCT 57.063 37.500 0.00 0.00 0.00 3.24
242 243 0.869730 CAAACGGGGTAGTTTCACGG 59.130 55.000 0.00 0.00 41.84 4.94
280 281 5.584251 GCTATGCTCCTTATAATTCAGCTCC 59.416 44.000 10.27 0.00 0.00 4.70
291 292 2.694397 TGGGACTGCTATGCTCCTTAT 58.306 47.619 0.00 0.00 0.00 1.73
299 300 2.421424 GAGCTTGTTTGGGACTGCTATG 59.579 50.000 0.00 0.00 38.30 2.23
301 302 1.699634 AGAGCTTGTTTGGGACTGCTA 59.300 47.619 0.00 0.00 38.30 3.49
324 325 4.669318 CATGATGCACTTTTTGAGGCTAG 58.331 43.478 0.00 0.00 0.00 3.42
326 327 2.353406 GCATGATGCACTTTTTGAGGCT 60.353 45.455 13.36 0.00 44.26 4.58
327 328 1.997606 GCATGATGCACTTTTTGAGGC 59.002 47.619 13.36 0.00 44.26 4.70
339 391 3.691118 TCAAAGTTAGTCCAGCATGATGC 59.309 43.478 9.89 9.89 45.46 3.91
345 397 2.040278 AGGCATCAAAGTTAGTCCAGCA 59.960 45.455 0.00 0.00 0.00 4.41
346 398 2.716217 AGGCATCAAAGTTAGTCCAGC 58.284 47.619 0.00 0.00 0.00 4.85
347 399 6.092807 GTCTTAAGGCATCAAAGTTAGTCCAG 59.907 42.308 1.16 0.00 0.00 3.86
352 404 5.940470 AGGTGTCTTAAGGCATCAAAGTTAG 59.060 40.000 21.89 0.00 0.00 2.34
354 406 4.729868 AGGTGTCTTAAGGCATCAAAGTT 58.270 39.130 21.89 0.00 0.00 2.66
355 407 4.373156 AGGTGTCTTAAGGCATCAAAGT 57.627 40.909 21.89 0.00 0.00 2.66
359 411 3.450904 AGGTAGGTGTCTTAAGGCATCA 58.549 45.455 21.89 5.81 0.00 3.07
360 412 4.489306 AAGGTAGGTGTCTTAAGGCATC 57.511 45.455 13.85 13.20 0.00 3.91
361 413 4.567747 CCAAAGGTAGGTGTCTTAAGGCAT 60.568 45.833 13.85 0.20 0.00 4.40
362 414 3.244770 CCAAAGGTAGGTGTCTTAAGGCA 60.245 47.826 5.45 5.45 0.00 4.75
363 415 3.344515 CCAAAGGTAGGTGTCTTAAGGC 58.655 50.000 0.00 0.00 0.00 4.35
364 416 3.951663 CCCAAAGGTAGGTGTCTTAAGG 58.048 50.000 1.85 0.00 0.00 2.69
380 432 1.487142 TCGGTGTCTTTGAGACCCAAA 59.513 47.619 8.07 0.00 44.44 3.28
381 433 1.124780 TCGGTGTCTTTGAGACCCAA 58.875 50.000 8.07 0.00 44.44 4.12
382 434 1.070134 CTTCGGTGTCTTTGAGACCCA 59.930 52.381 8.07 0.00 44.44 4.51
383 435 1.797025 CTTCGGTGTCTTTGAGACCC 58.203 55.000 8.07 5.80 44.44 4.46
384 436 1.149148 GCTTCGGTGTCTTTGAGACC 58.851 55.000 5.70 4.08 44.44 3.85
385 437 1.795286 CTGCTTCGGTGTCTTTGAGAC 59.205 52.381 1.21 1.21 45.26 3.36
386 438 1.873903 GCTGCTTCGGTGTCTTTGAGA 60.874 52.381 0.00 0.00 0.00 3.27
388 440 1.221466 CGCTGCTTCGGTGTCTTTGA 61.221 55.000 0.00 0.00 0.00 2.69
389 441 1.205064 CGCTGCTTCGGTGTCTTTG 59.795 57.895 0.00 0.00 0.00 2.77
390 442 1.222115 GACGCTGCTTCGGTGTCTTT 61.222 55.000 10.99 0.00 44.14 2.52
392 444 2.049063 GACGCTGCTTCGGTGTCT 60.049 61.111 10.99 0.00 44.14 3.41
393 445 3.112709 GGACGCTGCTTCGGTGTC 61.113 66.667 10.05 10.05 46.03 3.67
394 446 2.731691 AATGGACGCTGCTTCGGTGT 62.732 55.000 0.00 0.00 36.07 4.16
396 448 2.034879 CAATGGACGCTGCTTCGGT 61.035 57.895 0.00 0.00 0.00 4.69
397 449 2.753966 CCAATGGACGCTGCTTCGG 61.754 63.158 0.00 0.00 0.00 4.30
399 451 0.379669 CATCCAATGGACGCTGCTTC 59.620 55.000 3.09 0.00 32.98 3.86
402 454 2.409055 TGCATCCAATGGACGCTGC 61.409 57.895 21.32 18.97 41.87 5.25
403 455 1.430632 GTGCATCCAATGGACGCTG 59.569 57.895 21.32 9.36 41.87 5.18
425 477 1.014564 GGAGTTTCCTGCGTTCTCCG 61.015 60.000 0.00 0.00 35.94 4.63
435 487 1.068121 CCTGGGACTTGGAGTTTCCT 58.932 55.000 0.00 0.00 37.46 3.36
439 491 0.401395 TCCACCTGGGACTTGGAGTT 60.401 55.000 0.00 0.00 42.15 3.01
484 536 2.952245 CTTCTCGTCCGACACCGT 59.048 61.111 0.00 0.00 0.00 4.83
638 702 0.907486 TGCTTGGTGATGGAGAGAGG 59.093 55.000 0.00 0.00 0.00 3.69
658 730 1.069775 GGTGGGGGAAGGTTCAGTTA 58.930 55.000 0.00 0.00 0.00 2.24
659 731 1.726192 GGGTGGGGGAAGGTTCAGTT 61.726 60.000 0.00 0.00 0.00 3.16
679 751 2.647297 GCAGCTGGGTTGTTCTGC 59.353 61.111 17.12 0.00 43.95 4.26
721 793 3.986006 TCGTGTGGGACCGTCTGC 61.986 66.667 0.00 0.00 0.00 4.26
724 796 4.712425 CCGTCGTGTGGGACCGTC 62.712 72.222 0.00 0.00 33.30 4.79
736 808 0.107848 ATTCTTTAGGGTGGCCGTCG 60.108 55.000 0.00 0.00 0.00 5.12
765 837 3.642778 ATCCGTTACGCGCTGCAGT 62.643 57.895 16.64 0.00 39.71 4.40
786 873 3.546724 TCCTGTCTCTCGATGGTCTTAG 58.453 50.000 0.00 0.00 0.00 2.18
820 912 1.920610 ACGTCGGGGATTATCTAGGG 58.079 55.000 0.00 0.00 0.00 3.53
839 931 0.037160 GGAGGGGAAAGCGTGGTTAA 59.963 55.000 0.00 0.00 0.00 2.01
873 965 2.315901 CGGTTCGATTTTGCTTGGTTC 58.684 47.619 0.00 0.00 0.00 3.62
925 1017 4.181010 CGGATCAGTGCCTGGGGG 62.181 72.222 0.00 0.00 31.51 5.40
961 1053 4.537433 GATCCCTTCAGCGGCGCT 62.537 66.667 31.35 31.35 40.77 5.92
1124 1228 2.124693 GGAGAGGGCGGAGAGTCAG 61.125 68.421 0.00 0.00 0.00 3.51
1131 1235 2.322156 TAGGAAGGGAGAGGGCGGA 61.322 63.158 0.00 0.00 0.00 5.54
1133 1237 1.075896 AGTAGGAAGGGAGAGGGCG 60.076 63.158 0.00 0.00 0.00 6.13
1138 1242 0.395862 CCAGCGAGTAGGAAGGGAGA 60.396 60.000 0.00 0.00 0.00 3.71
1141 1245 2.022240 GCTCCAGCGAGTAGGAAGGG 62.022 65.000 0.00 0.00 38.49 3.95
1142 1246 1.439644 GCTCCAGCGAGTAGGAAGG 59.560 63.158 0.00 0.00 38.49 3.46
1175 1279 0.667453 GCGTCCCTGTAGGTACTAGC 59.333 60.000 0.00 0.00 44.14 3.42
1177 1281 2.048444 CAGCGTCCCTGTAGGTACTA 57.952 55.000 0.00 0.00 34.66 1.82
1178 1282 2.883572 CAGCGTCCCTGTAGGTACT 58.116 57.895 0.00 0.00 36.79 2.73
1209 1313 3.066760 AGCTCAACAAAGCAACTACCAAC 59.933 43.478 0.00 0.00 45.00 3.77
1233 1337 4.063967 CGGCAGCGTCCCTGTACA 62.064 66.667 0.00 0.00 43.71 2.90
1234 1338 2.216750 TTACGGCAGCGTCCCTGTAC 62.217 60.000 0.00 0.00 43.71 2.90
1235 1339 1.940883 CTTACGGCAGCGTCCCTGTA 61.941 60.000 0.00 0.00 43.71 2.74
1237 1341 2.509336 CTTACGGCAGCGTCCCTG 60.509 66.667 0.00 0.00 44.67 4.45
1238 1342 2.995574 ACTTACGGCAGCGTCCCT 60.996 61.111 0.00 0.00 0.00 4.20
1241 1345 1.805945 CAGGACTTACGGCAGCGTC 60.806 63.158 0.00 0.00 0.00 5.19
1242 1346 1.246056 TACAGGACTTACGGCAGCGT 61.246 55.000 0.00 0.00 0.00 5.07
1243 1347 0.525668 CTACAGGACTTACGGCAGCG 60.526 60.000 0.00 0.00 0.00 5.18
1257 1374 4.894784 TCTTTCCAAGCACTAACCTACAG 58.105 43.478 0.00 0.00 0.00 2.74
1260 1377 3.307480 GCCTCTTTCCAAGCACTAACCTA 60.307 47.826 0.00 0.00 0.00 3.08
1267 1384 0.250901 TCCTGCCTCTTTCCAAGCAC 60.251 55.000 0.00 0.00 0.00 4.40
1297 1414 3.125316 CGTCAATTCTTCCCTTGCACTAC 59.875 47.826 0.00 0.00 0.00 2.73
1298 1415 3.334691 CGTCAATTCTTCCCTTGCACTA 58.665 45.455 0.00 0.00 0.00 2.74
1301 1418 1.533625 CCGTCAATTCTTCCCTTGCA 58.466 50.000 0.00 0.00 0.00 4.08
1303 1420 1.812571 CACCCGTCAATTCTTCCCTTG 59.187 52.381 0.00 0.00 0.00 3.61
1305 1422 1.358152 TCACCCGTCAATTCTTCCCT 58.642 50.000 0.00 0.00 0.00 4.20
1306 1423 2.017049 CATCACCCGTCAATTCTTCCC 58.983 52.381 0.00 0.00 0.00 3.97
1307 1424 2.017049 CCATCACCCGTCAATTCTTCC 58.983 52.381 0.00 0.00 0.00 3.46
1309 1426 2.305927 AGTCCATCACCCGTCAATTCTT 59.694 45.455 0.00 0.00 0.00 2.52
1310 1427 1.909302 AGTCCATCACCCGTCAATTCT 59.091 47.619 0.00 0.00 0.00 2.40
1312 1429 1.628340 TCAGTCCATCACCCGTCAATT 59.372 47.619 0.00 0.00 0.00 2.32
1313 1430 1.275666 TCAGTCCATCACCCGTCAAT 58.724 50.000 0.00 0.00 0.00 2.57
1314 1431 1.207089 GATCAGTCCATCACCCGTCAA 59.793 52.381 0.00 0.00 0.00 3.18
1315 1432 0.824109 GATCAGTCCATCACCCGTCA 59.176 55.000 0.00 0.00 0.00 4.35
1316 1433 0.249073 CGATCAGTCCATCACCCGTC 60.249 60.000 0.00 0.00 0.00 4.79
1317 1434 0.970937 ACGATCAGTCCATCACCCGT 60.971 55.000 0.00 0.00 0.00 5.28
1318 1435 0.528466 CACGATCAGTCCATCACCCG 60.528 60.000 0.00 0.00 0.00 5.28
1351 1481 7.429636 TGCTTGTTTACTAATTACTGGTCAC 57.570 36.000 0.00 0.00 0.00 3.67
1413 1548 3.136443 TGCATCCTACAACTTCCCCATAG 59.864 47.826 0.00 0.00 0.00 2.23
1418 1553 3.055094 TCTTCTGCATCCTACAACTTCCC 60.055 47.826 0.00 0.00 0.00 3.97
1426 1561 9.914131 AATTTTTAGTTTTCTTCTGCATCCTAC 57.086 29.630 0.00 0.00 0.00 3.18
1487 1622 6.828273 CACCAACCCTGTCAATCAATAGATAA 59.172 38.462 0.00 0.00 33.08 1.75
1520 1661 0.464036 ACACACAAACTCTGCCGAGA 59.536 50.000 12.54 0.00 39.74 4.04
1562 1703 4.680708 GCTCGATATCCACCTGTTCTTCAA 60.681 45.833 0.00 0.00 0.00 2.69
1563 1704 3.181475 GCTCGATATCCACCTGTTCTTCA 60.181 47.826 0.00 0.00 0.00 3.02
1599 1740 2.912542 TAGAGCCTAGGCGCGCAT 60.913 61.111 34.42 30.20 45.41 4.73
1600 1741 3.596743 CTAGAGCCTAGGCGCGCA 61.597 66.667 34.42 20.26 45.41 6.09
1620 1761 1.893801 AGTGCTAGGTGTTTCGCTACT 59.106 47.619 0.00 0.00 0.00 2.57
1621 1762 2.365408 AGTGCTAGGTGTTTCGCTAC 57.635 50.000 0.00 0.00 0.00 3.58
1624 1765 3.435671 ACATTAAGTGCTAGGTGTTTCGC 59.564 43.478 0.00 0.00 0.00 4.70
1638 1779 1.374560 TTATGCCGCGCACATTAAGT 58.625 45.000 16.99 0.00 43.04 2.24
1665 1806 3.111098 GCTTTTCTGAAGCACACACTTG 58.889 45.455 5.93 0.00 42.56 3.16
1693 1834 4.471904 TTAATTGTGTGTTTTGCCACCA 57.528 36.364 0.00 0.00 34.35 4.17
1749 1890 4.746729 TGCAAACATTCAGTTATGATGCC 58.253 39.130 0.00 0.00 40.26 4.40
1823 1964 5.990668 ACCTCAGTCCATAAAATGTAGACC 58.009 41.667 0.00 0.00 0.00 3.85
1873 2015 0.676466 TGAGCCAATAGCCCAACGTG 60.676 55.000 0.00 0.00 45.47 4.49
1882 2024 6.140303 ACACATAAAAGCATGAGCCAATAG 57.860 37.500 0.00 0.00 43.56 1.73
1891 2033 4.627611 AGCTGCTACACATAAAAGCATG 57.372 40.909 0.00 0.00 44.69 4.06
1991 2137 6.430925 TCCAAACCATGAACTGTAGATTTCAG 59.569 38.462 0.00 0.00 35.25 3.02
2195 2341 4.935702 TGGTTGCAGTTCTTTGAAATCAG 58.064 39.130 0.00 0.00 0.00 2.90
2224 2370 7.047891 TGGTTATGTTCTTACAGACATCATCC 58.952 38.462 0.00 0.00 37.77 3.51
2305 2451 7.572168 GCAAGTCAGGAAGAGAAGACATAAAAC 60.572 40.741 0.00 0.00 33.56 2.43
2322 2468 0.108615 ATCGTTCCGAGCAAGTCAGG 60.109 55.000 0.00 0.00 39.91 3.86
2600 2746 4.836125 ACACTCAAATGGCTGTTTACAG 57.164 40.909 5.52 5.52 46.40 2.74
2628 2774 8.604640 TGCATCATTCAAAACATACAACAAAT 57.395 26.923 0.00 0.00 0.00 2.32
2653 2799 7.667575 TCTTACTAAGAGATTTCTGAGGCAT 57.332 36.000 2.76 0.00 36.36 4.40
2672 2818 8.989980 CCGGAATGTCCTCTTATTATTTCTTAC 58.010 37.037 0.00 0.00 33.30 2.34
2749 2895 1.281925 ATGGGAGGGCGGAAGACAAT 61.282 55.000 0.00 0.00 45.40 2.71
2779 2925 1.850345 TGGACAGGGGAGTGTTTTTCT 59.150 47.619 0.00 0.00 0.00 2.52
2780 2926 2.358322 TGGACAGGGGAGTGTTTTTC 57.642 50.000 0.00 0.00 0.00 2.29
2823 2971 9.144747 AGATGAATATGTAAATACGATCAGCAC 57.855 33.333 0.00 0.00 0.00 4.40
2849 2997 5.991606 ACATCACGACTCATTCTCTTTTCAA 59.008 36.000 0.00 0.00 0.00 2.69
2870 3018 8.437575 TCTAAGTTTCCCTAACAAGAGAAACAT 58.562 33.333 14.71 7.19 46.67 2.71
2951 3099 6.667558 AGTGGCTTAAAAGAGTGTAGTACT 57.332 37.500 0.00 0.00 44.02 2.73
2976 3124 3.648339 TCAGCTTTCAGTGAAAATGCC 57.352 42.857 20.36 10.21 30.84 4.40
2977 3125 5.947443 AGTATCAGCTTTCAGTGAAAATGC 58.053 37.500 18.55 18.08 30.84 3.56
2991 3139 3.776969 TCCATTCTGGACAAGTATCAGCT 59.223 43.478 0.00 0.00 42.67 4.24
3120 3268 9.480053 AAAAACAGCTAAATGTTAGTACGTAGA 57.520 29.630 0.00 0.00 42.49 2.59
3124 3272 9.607285 AATCAAAAACAGCTAAATGTTAGTACG 57.393 29.630 0.00 0.00 42.49 3.67
3394 3546 6.183360 ACAGCAAAACTCGTTGGAAAAGAATA 60.183 34.615 0.00 0.00 32.95 1.75
3436 3588 5.808366 ATCACTTCTTTACCAGACAGACA 57.192 39.130 0.00 0.00 0.00 3.41
3437 3589 7.355778 CAAAATCACTTCTTTACCAGACAGAC 58.644 38.462 0.00 0.00 0.00 3.51
3438 3590 6.017109 GCAAAATCACTTCTTTACCAGACAGA 60.017 38.462 0.00 0.00 0.00 3.41
3439 3591 6.145535 GCAAAATCACTTCTTTACCAGACAG 58.854 40.000 0.00 0.00 0.00 3.51
3498 3650 4.511527 ACACAAGATACTGATGCCTGAAG 58.488 43.478 0.00 0.00 0.00 3.02
3515 3667 1.270571 TGGCAGCATACGAGAACACAA 60.271 47.619 0.00 0.00 0.00 3.33
3569 3723 4.952262 ATTCATCACAAACATCAGACCG 57.048 40.909 0.00 0.00 0.00 4.79
3579 3733 7.407393 TGCCAATTCAGATATTCATCACAAA 57.593 32.000 0.00 0.00 33.21 2.83
3652 3806 0.602638 TTCTGTGGCCGTACAAGCAG 60.603 55.000 0.00 0.00 0.00 4.24
3846 4400 3.254166 AGCACACGAAAAATCAATCTGCT 59.746 39.130 0.00 0.00 0.00 4.24
3904 8732 5.565439 GCTGTTTGCACCTAATGATTGAAGT 60.565 40.000 0.00 0.00 42.31 3.01
3907 8735 4.439305 GCTGTTTGCACCTAATGATTGA 57.561 40.909 0.00 0.00 42.31 2.57
4004 8832 6.428385 AAATTGTCGATCATGAAGTTCCTC 57.572 37.500 0.00 0.00 0.00 3.71
4049 8905 5.254115 GGAACAGTTATTAAGCCCACTTCT 58.746 41.667 0.00 0.00 37.33 2.85
4054 8910 4.291249 AGAAGGGAACAGTTATTAAGCCCA 59.709 41.667 7.96 0.00 36.55 5.36
4057 8913 6.104665 ACGTAGAAGGGAACAGTTATTAAGC 58.895 40.000 0.00 0.00 0.00 3.09
4066 8922 2.943449 GGAGACGTAGAAGGGAACAG 57.057 55.000 0.00 0.00 0.00 3.16
4108 8964 6.402118 GCGAACTGAATTCAAGCTATTACACA 60.402 38.462 9.88 0.00 37.12 3.72
4119 8975 2.066262 GACGGAGCGAACTGAATTCAA 58.934 47.619 9.88 0.00 37.12 2.69
4120 8976 1.272490 AGACGGAGCGAACTGAATTCA 59.728 47.619 8.12 8.12 37.12 2.57
4150 9070 9.201989 TCTGAGATACCTCTTTACACATAACAT 57.798 33.333 0.00 0.00 40.10 2.71
4151 9071 8.589701 TCTGAGATACCTCTTTACACATAACA 57.410 34.615 0.00 0.00 40.10 2.41
4154 9074 9.201989 ACATTCTGAGATACCTCTTTACACATA 57.798 33.333 0.00 0.00 40.10 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.