Multiple sequence alignment - TraesCS2A01G416600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS2A01G416600 chr2A 100.000 4775 0 0 1 4775 672835708 672840482 0.000000e+00 8818
1 TraesCS2A01G416600 chr2D 92.345 3070 230 4 969 4034 528077072 528080140 0.000000e+00 4362
2 TraesCS2A01G416600 chr2D 90.528 549 35 10 4039 4582 528080206 528080742 0.000000e+00 710
3 TraesCS2A01G416600 chr2D 90.000 190 18 1 4586 4775 528081229 528081417 1.330000e-60 244
4 TraesCS2A01G416600 chr2B 92.234 2923 222 5 969 3889 625917066 625919985 0.000000e+00 4135
5 TraesCS2A01G416600 chr2B 87.113 613 41 16 4036 4630 625926875 625927467 0.000000e+00 660
6 TraesCS2A01G416600 chr2B 93.421 152 8 1 3885 4034 625926662 625926813 1.730000e-54 224
7 TraesCS2A01G416600 chr2B 89.167 120 11 1 4658 4775 625927550 625927669 1.070000e-31 148
8 TraesCS2A01G416600 chr7D 87.515 817 95 6 1 812 611664817 611665631 0.000000e+00 937
9 TraesCS2A01G416600 chr5B 87.408 818 95 7 1 813 614364903 614364089 0.000000e+00 933
10 TraesCS2A01G416600 chr5B 86.603 836 99 10 5 831 356688426 356687595 0.000000e+00 911
11 TraesCS2A01G416600 chr3D 87.132 816 99 5 1 812 528948105 528948918 0.000000e+00 920
12 TraesCS2A01G416600 chr1D 86.651 839 98 11 1 829 461901110 461900276 0.000000e+00 917
13 TraesCS2A01G416600 chr3B 86.603 836 101 7 5 832 554961534 554960702 0.000000e+00 913
14 TraesCS2A01G416600 chr4B 86.499 837 103 6 1 828 81362354 81363189 0.000000e+00 911
15 TraesCS2A01G416600 chr4B 86.483 836 103 7 1 829 67923544 67922712 0.000000e+00 909
16 TraesCS2A01G416600 chr6B 86.499 837 101 9 1 829 696644531 696643699 0.000000e+00 909


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS2A01G416600 chr2A 672835708 672840482 4774 False 8818 8818 100.000000 1 4775 1 chr2A.!!$F1 4774
1 TraesCS2A01G416600 chr2D 528077072 528081417 4345 False 1772 4362 90.957667 969 4775 3 chr2D.!!$F1 3806
2 TraesCS2A01G416600 chr2B 625917066 625919985 2919 False 4135 4135 92.234000 969 3889 1 chr2B.!!$F1 2920
3 TraesCS2A01G416600 chr2B 625926662 625927669 1007 False 344 660 89.900333 3885 4775 3 chr2B.!!$F2 890
4 TraesCS2A01G416600 chr7D 611664817 611665631 814 False 937 937 87.515000 1 812 1 chr7D.!!$F1 811
5 TraesCS2A01G416600 chr5B 614364089 614364903 814 True 933 933 87.408000 1 813 1 chr5B.!!$R2 812
6 TraesCS2A01G416600 chr5B 356687595 356688426 831 True 911 911 86.603000 5 831 1 chr5B.!!$R1 826
7 TraesCS2A01G416600 chr3D 528948105 528948918 813 False 920 920 87.132000 1 812 1 chr3D.!!$F1 811
8 TraesCS2A01G416600 chr1D 461900276 461901110 834 True 917 917 86.651000 1 829 1 chr1D.!!$R1 828
9 TraesCS2A01G416600 chr3B 554960702 554961534 832 True 913 913 86.603000 5 832 1 chr3B.!!$R1 827
10 TraesCS2A01G416600 chr4B 81362354 81363189 835 False 911 911 86.499000 1 828 1 chr4B.!!$F1 827
11 TraesCS2A01G416600 chr4B 67922712 67923544 832 True 909 909 86.483000 1 829 1 chr4B.!!$R1 828
12 TraesCS2A01G416600 chr6B 696643699 696644531 832 True 909 909 86.499000 1 829 1 chr6B.!!$R1 828

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
958 968 0.036732 TGCCGCCAGTCAAAGAGAAT 59.963 50.0 0.00 0.0 0.00 2.40 F
1548 1558 0.112606 TCACGGAGGACCTTGACTCT 59.887 55.0 0.00 0.0 39.09 3.24 F
1552 1562 0.323542 GGAGGACCTTGACTCTCGGA 60.324 60.0 0.00 0.0 34.22 4.55 F
2883 2893 0.178068 CCATGGTCCAGAGGTTACCG 59.822 60.0 2.57 0.0 35.98 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2353 2363 0.041684 CCCTGGCCCTTTTCCTCAAT 59.958 55.0 0.0 0.0 0.00 2.57 R
2462 2472 0.393402 ATGAATGCAGAGCCGCTTCA 60.393 50.0 0.0 0.0 35.24 3.02 R
3160 3170 0.443869 CGACTGACAATTCCCAAGCG 59.556 55.0 0.0 0.0 0.00 4.68 R
4640 5207 0.241213 TCAGTTCGCTCCGTCTTCTG 59.759 55.0 0.0 0.0 0.00 3.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 6.991531 ACGTAAGGACCAACATAACAAAACTA 59.008 34.615 0.00 0.00 46.39 2.24
117 118 2.086869 CCAACGAATGTCATCTGCCTT 58.913 47.619 0.00 0.00 0.00 4.35
138 139 1.039233 GGCACAACCATAGCAGCCAT 61.039 55.000 0.00 0.00 41.63 4.40
140 141 1.753930 CACAACCATAGCAGCCATCA 58.246 50.000 0.00 0.00 0.00 3.07
151 152 4.248691 AGCAGCCATCAAAGAAAAGAAC 57.751 40.909 0.00 0.00 0.00 3.01
165 166 1.254026 AAGAACGACGGATCACCTCA 58.746 50.000 0.00 0.00 0.00 3.86
170 171 0.741326 CGACGGATCACCTCATCACT 59.259 55.000 0.00 0.00 0.00 3.41
256 257 0.383949 GAAGCCTTTGCCGTTGAACA 59.616 50.000 0.00 0.00 38.69 3.18
264 265 4.549458 CTTTGCCGTTGAACAAATCAGAT 58.451 39.130 0.00 0.00 39.77 2.90
286 287 1.228552 GGCAACACCCCAGACACAT 60.229 57.895 0.00 0.00 0.00 3.21
298 299 2.167281 CCAGACACATCATCGAACTCCT 59.833 50.000 0.00 0.00 0.00 3.69
376 378 0.398696 AACCACGAACCCAGCACATA 59.601 50.000 0.00 0.00 0.00 2.29
380 382 2.491693 CCACGAACCCAGCACATATTTT 59.508 45.455 0.00 0.00 0.00 1.82
389 391 5.304101 ACCCAGCACATATTTTGTCTTTCAA 59.696 36.000 0.00 0.00 36.00 2.69
428 430 1.558294 ACAATCTGCATCAGCTCCTGA 59.442 47.619 0.00 0.00 44.99 3.86
429 431 1.941294 CAATCTGCATCAGCTCCTGAC 59.059 52.381 0.00 0.00 43.63 3.51
441 443 1.952621 CTCCTGACCTACCTCCCAAA 58.047 55.000 0.00 0.00 0.00 3.28
455 457 2.317609 CCAAACTCCACGCCGACAG 61.318 63.158 0.00 0.00 0.00 3.51
509 511 2.148916 GACACATGTCCACAACGAGA 57.851 50.000 0.00 0.00 39.07 4.04
522 527 2.745884 CGAGAATGCCACCGCCAA 60.746 61.111 0.00 0.00 0.00 4.52
616 621 8.267894 AGAAGGATCCGAAGAATCTTTATTCAA 58.732 33.333 5.98 0.00 43.44 2.69
626 631 5.354234 AGAATCTTTATTCAACGCCGTCATT 59.646 36.000 0.00 0.00 43.44 2.57
655 660 3.057019 CCGAAGTCAAGACGATGAACAA 58.943 45.455 0.00 0.00 36.20 2.83
660 665 3.809832 AGTCAAGACGATGAACAAACCTG 59.190 43.478 0.00 0.00 36.20 4.00
702 707 1.500108 AAAAACGATCCACACGCGTA 58.500 45.000 13.44 0.00 37.26 4.42
727 733 3.706373 CGACCCCCTCACCACTGG 61.706 72.222 0.00 0.00 0.00 4.00
728 734 2.529389 GACCCCCTCACCACTGGT 60.529 66.667 0.00 0.00 35.62 4.00
776 782 4.162690 GGAGGACGGCGCTGGAAT 62.163 66.667 22.44 4.97 0.00 3.01
787 793 1.972872 CGCTGGAATATTGGCCTCTT 58.027 50.000 3.32 0.00 0.00 2.85
790 796 3.560105 GCTGGAATATTGGCCTCTTCTT 58.440 45.455 3.32 0.00 0.00 2.52
791 797 4.718961 GCTGGAATATTGGCCTCTTCTTA 58.281 43.478 3.32 0.00 0.00 2.10
793 799 5.684704 CTGGAATATTGGCCTCTTCTTACA 58.315 41.667 3.32 0.00 0.00 2.41
806 812 5.501156 CTCTTCTTACAATGGCTAGGGTTT 58.499 41.667 0.00 0.00 0.00 3.27
820 830 1.371558 GGTTTCAGCCAGGACGAGT 59.628 57.895 0.00 0.00 0.00 4.18
829 839 1.882352 GCCAGGACGAGTGGAAAACAT 60.882 52.381 6.64 0.00 37.23 2.71
832 842 3.317993 CCAGGACGAGTGGAAAACATTTT 59.682 43.478 0.00 0.00 37.23 1.82
833 843 4.202111 CCAGGACGAGTGGAAAACATTTTT 60.202 41.667 0.00 0.00 37.23 1.94
834 844 5.009210 CCAGGACGAGTGGAAAACATTTTTA 59.991 40.000 0.00 0.00 37.23 1.52
835 845 6.294508 CCAGGACGAGTGGAAAACATTTTTAT 60.295 38.462 0.00 0.00 37.23 1.40
836 846 7.145323 CAGGACGAGTGGAAAACATTTTTATT 58.855 34.615 0.00 0.00 0.00 1.40
837 847 7.326063 CAGGACGAGTGGAAAACATTTTTATTC 59.674 37.037 0.00 0.00 0.00 1.75
838 848 7.230712 AGGACGAGTGGAAAACATTTTTATTCT 59.769 33.333 0.00 0.00 0.00 2.40
839 849 7.865889 GGACGAGTGGAAAACATTTTTATTCTT 59.134 33.333 0.00 0.00 0.00 2.52
840 850 8.574196 ACGAGTGGAAAACATTTTTATTCTTG 57.426 30.769 0.00 0.00 0.00 3.02
841 851 8.194769 ACGAGTGGAAAACATTTTTATTCTTGT 58.805 29.630 0.00 0.00 0.00 3.16
842 852 9.030301 CGAGTGGAAAACATTTTTATTCTTGTT 57.970 29.630 0.00 0.00 33.93 2.83
857 867 9.474920 TTTATTCTTGTTTTTCATGGTTAGCTG 57.525 29.630 0.00 0.00 0.00 4.24
858 868 6.463995 TTCTTGTTTTTCATGGTTAGCTGT 57.536 33.333 0.00 0.00 0.00 4.40
859 869 6.463995 TCTTGTTTTTCATGGTTAGCTGTT 57.536 33.333 0.00 0.00 0.00 3.16
860 870 6.503524 TCTTGTTTTTCATGGTTAGCTGTTC 58.496 36.000 0.00 0.00 0.00 3.18
861 871 5.195001 TGTTTTTCATGGTTAGCTGTTCC 57.805 39.130 0.00 0.00 0.00 3.62
862 872 4.038642 TGTTTTTCATGGTTAGCTGTTCCC 59.961 41.667 0.00 0.00 0.00 3.97
863 873 3.517296 TTTCATGGTTAGCTGTTCCCA 57.483 42.857 0.00 0.00 0.00 4.37
864 874 2.787473 TCATGGTTAGCTGTTCCCAG 57.213 50.000 0.00 0.00 41.91 4.45
865 875 2.265367 TCATGGTTAGCTGTTCCCAGA 58.735 47.619 0.00 0.00 41.50 3.86
866 876 2.027192 TCATGGTTAGCTGTTCCCAGAC 60.027 50.000 0.00 0.00 41.50 3.51
867 877 0.320374 TGGTTAGCTGTTCCCAGACG 59.680 55.000 0.00 0.00 41.50 4.18
868 878 0.606604 GGTTAGCTGTTCCCAGACGA 59.393 55.000 0.00 0.00 41.50 4.20
869 879 1.207329 GGTTAGCTGTTCCCAGACGAT 59.793 52.381 0.00 0.00 41.50 3.73
870 880 2.541556 GTTAGCTGTTCCCAGACGATC 58.458 52.381 0.00 0.00 41.50 3.69
871 881 1.847328 TAGCTGTTCCCAGACGATCA 58.153 50.000 0.00 0.00 41.50 2.92
872 882 0.976641 AGCTGTTCCCAGACGATCAA 59.023 50.000 0.00 0.00 41.50 2.57
873 883 1.556911 AGCTGTTCCCAGACGATCAAT 59.443 47.619 0.00 0.00 41.50 2.57
874 884 2.026822 AGCTGTTCCCAGACGATCAATT 60.027 45.455 0.00 0.00 41.50 2.32
875 885 2.352960 GCTGTTCCCAGACGATCAATTC 59.647 50.000 0.00 0.00 41.50 2.17
876 886 3.599343 CTGTTCCCAGACGATCAATTCA 58.401 45.455 0.00 0.00 41.50 2.57
877 887 4.002982 CTGTTCCCAGACGATCAATTCAA 58.997 43.478 0.00 0.00 41.50 2.69
878 888 4.393834 TGTTCCCAGACGATCAATTCAAA 58.606 39.130 0.00 0.00 0.00 2.69
879 889 4.215399 TGTTCCCAGACGATCAATTCAAAC 59.785 41.667 0.00 0.00 0.00 2.93
880 890 4.014569 TCCCAGACGATCAATTCAAACA 57.985 40.909 0.00 0.00 0.00 2.83
881 891 4.393834 TCCCAGACGATCAATTCAAACAA 58.606 39.130 0.00 0.00 0.00 2.83
882 892 4.824537 TCCCAGACGATCAATTCAAACAAA 59.175 37.500 0.00 0.00 0.00 2.83
883 893 5.300539 TCCCAGACGATCAATTCAAACAAAA 59.699 36.000 0.00 0.00 0.00 2.44
884 894 5.982516 CCCAGACGATCAATTCAAACAAAAA 59.017 36.000 0.00 0.00 0.00 1.94
913 923 9.807921 AATCAACTAAAAGAAACTATTCCCAGA 57.192 29.630 0.00 0.00 36.12 3.86
914 924 8.617290 TCAACTAAAAGAAACTATTCCCAGAC 57.383 34.615 0.00 0.00 36.12 3.51
915 925 7.386848 TCAACTAAAAGAAACTATTCCCAGACG 59.613 37.037 0.00 0.00 36.12 4.18
916 926 6.171213 ACTAAAAGAAACTATTCCCAGACGG 58.829 40.000 0.00 0.00 36.12 4.79
928 938 2.940994 CCAGACGGGATAGAGAGAGA 57.059 55.000 0.00 0.00 40.01 3.10
929 939 3.216187 CCAGACGGGATAGAGAGAGAA 57.784 52.381 0.00 0.00 40.01 2.87
930 940 3.761897 CCAGACGGGATAGAGAGAGAAT 58.238 50.000 0.00 0.00 40.01 2.40
931 941 3.756434 CCAGACGGGATAGAGAGAGAATC 59.244 52.174 0.00 0.00 40.01 2.52
932 942 3.435327 CAGACGGGATAGAGAGAGAATCG 59.565 52.174 0.00 0.00 42.67 3.34
933 943 3.325425 AGACGGGATAGAGAGAGAATCGA 59.675 47.826 0.00 0.00 42.67 3.59
934 944 4.066490 GACGGGATAGAGAGAGAATCGAA 58.934 47.826 0.00 0.00 42.67 3.71
935 945 4.658063 ACGGGATAGAGAGAGAATCGAAT 58.342 43.478 0.00 0.00 42.67 3.34
936 946 4.698304 ACGGGATAGAGAGAGAATCGAATC 59.302 45.833 0.00 0.00 42.67 2.52
937 947 4.201773 CGGGATAGAGAGAGAATCGAATCG 60.202 50.000 0.00 0.00 42.67 3.34
938 948 4.438200 GGGATAGAGAGAGAATCGAATCGC 60.438 50.000 0.00 0.00 42.67 4.58
939 949 4.394920 GGATAGAGAGAGAATCGAATCGCT 59.605 45.833 6.43 6.43 42.67 4.93
940 950 3.624326 AGAGAGAGAATCGAATCGCTG 57.376 47.619 11.70 0.00 42.67 5.18
941 951 2.050691 GAGAGAGAATCGAATCGCTGC 58.949 52.381 11.70 3.94 42.67 5.25
942 952 1.135867 GAGAGAATCGAATCGCTGCC 58.864 55.000 11.70 0.00 42.67 4.85
943 953 0.596083 AGAGAATCGAATCGCTGCCG 60.596 55.000 5.90 0.00 42.67 5.69
944 954 2.152013 GAGAATCGAATCGCTGCCGC 62.152 60.000 0.00 0.00 0.00 6.53
945 955 3.228688 GAATCGAATCGCTGCCGCC 62.229 63.158 0.00 0.00 0.00 6.13
946 956 4.529219 ATCGAATCGCTGCCGCCA 62.529 61.111 0.00 0.00 0.00 5.69
949 959 3.567797 GAATCGCTGCCGCCAGTC 61.568 66.667 0.00 0.00 41.26 3.51
950 960 4.393155 AATCGCTGCCGCCAGTCA 62.393 61.111 0.00 0.00 41.26 3.41
951 961 3.899981 AATCGCTGCCGCCAGTCAA 62.900 57.895 0.00 0.00 41.26 3.18
952 962 3.899981 ATCGCTGCCGCCAGTCAAA 62.900 57.895 0.00 0.00 41.26 2.69
953 963 4.093952 CGCTGCCGCCAGTCAAAG 62.094 66.667 0.00 0.00 41.26 2.77
954 964 2.669569 GCTGCCGCCAGTCAAAGA 60.670 61.111 0.00 0.00 41.26 2.52
955 965 2.684843 GCTGCCGCCAGTCAAAGAG 61.685 63.158 0.00 0.00 41.26 2.85
956 966 1.004560 CTGCCGCCAGTCAAAGAGA 60.005 57.895 0.00 0.00 34.31 3.10
957 967 0.603707 CTGCCGCCAGTCAAAGAGAA 60.604 55.000 0.00 0.00 34.31 2.87
958 968 0.036732 TGCCGCCAGTCAAAGAGAAT 59.963 50.000 0.00 0.00 0.00 2.40
959 969 0.729690 GCCGCCAGTCAAAGAGAATC 59.270 55.000 0.00 0.00 0.00 2.52
960 970 1.002366 CCGCCAGTCAAAGAGAATCG 58.998 55.000 0.00 0.00 42.67 3.34
961 971 0.371645 CGCCAGTCAAAGAGAATCGC 59.628 55.000 0.00 0.00 42.67 4.58
962 972 1.731720 GCCAGTCAAAGAGAATCGCT 58.268 50.000 0.00 0.00 42.67 4.93
963 973 1.396301 GCCAGTCAAAGAGAATCGCTG 59.604 52.381 0.00 0.00 42.67 5.18
964 974 2.932622 GCCAGTCAAAGAGAATCGCTGA 60.933 50.000 0.00 0.00 42.67 4.26
965 975 2.670414 CCAGTCAAAGAGAATCGCTGAC 59.330 50.000 0.00 0.00 45.79 3.51
1365 1375 2.029964 GACCTGTCGGACGCCAAA 59.970 61.111 3.34 0.00 0.00 3.28
1471 1481 2.276868 CGGAAGCAGCGCATTTCG 60.277 61.111 11.47 8.34 42.12 3.46
1474 1484 1.512734 GAAGCAGCGCATTTCGTGG 60.513 57.895 11.47 0.00 41.07 4.94
1477 1487 2.099062 CAGCGCATTTCGTGGAGC 59.901 61.111 11.47 0.00 41.07 4.70
1485 1495 0.331278 ATTTCGTGGAGCATGGGGAA 59.669 50.000 0.00 0.00 0.00 3.97
1495 1505 2.203015 ATGGGGAAATCGTCGGCG 60.203 61.111 1.15 1.15 39.92 6.46
1514 1524 4.927782 TGCGGCGCACAGAAGGTT 62.928 61.111 33.07 0.00 31.71 3.50
1548 1558 0.112606 TCACGGAGGACCTTGACTCT 59.887 55.000 0.00 0.00 39.09 3.24
1552 1562 0.323542 GGAGGACCTTGACTCTCGGA 60.324 60.000 0.00 0.00 34.22 4.55
1623 1633 0.753867 TCACCAGCGTGTACAAGGAA 59.246 50.000 10.87 0.00 41.09 3.36
1656 1666 1.444383 CTACTTCGACTGCGCTGCA 60.444 57.895 14.80 3.35 37.46 4.41
1686 1696 2.543031 CGTCTCCAAGAACTTCACGACA 60.543 50.000 0.00 0.00 0.00 4.35
1695 1705 3.057174 AGAACTTCACGACAGATGACCTC 60.057 47.826 0.00 0.00 0.00 3.85
1717 1727 6.070596 CCTCCTAAGGAAAATTGCCAAAGAAT 60.071 38.462 0.00 0.00 46.67 2.40
1816 1826 0.606604 TCTCGCCAACAAGAGGTACC 59.393 55.000 2.73 2.73 35.34 3.34
1818 1828 1.822990 CTCGCCAACAAGAGGTACCTA 59.177 52.381 16.29 0.00 0.00 3.08
1846 1856 0.475475 GGATGATGTCTGGGATGCCA 59.525 55.000 5.57 5.57 0.00 4.92
1974 1984 3.466836 GATCATCATGTTGGAACCGCTA 58.533 45.455 3.98 0.00 0.00 4.26
1975 1985 3.558931 TCATCATGTTGGAACCGCTAT 57.441 42.857 3.98 0.00 0.00 2.97
1976 1986 3.205338 TCATCATGTTGGAACCGCTATG 58.795 45.455 3.98 0.00 0.00 2.23
2020 2030 4.950475 TGTTTTGTAACACCACATTCAGGA 59.050 37.500 0.00 0.00 39.29 3.86
2027 2037 4.371624 ACACCACATTCAGGAAAGATGA 57.628 40.909 0.00 0.00 0.00 2.92
2353 2363 4.199310 GTTGTGGATTGCAGAAGGCTATA 58.801 43.478 0.00 0.00 45.15 1.31
2361 2371 5.372343 TTGCAGAAGGCTATATTGAGGAA 57.628 39.130 0.00 0.00 45.15 3.36
2388 2398 0.842635 AGGGCACATTGGAGGAGATC 59.157 55.000 0.00 0.00 0.00 2.75
2404 2414 2.229062 GAGATCGCGGATGATTACCTGA 59.771 50.000 6.13 0.00 0.00 3.86
2412 2422 3.069586 CGGATGATTACCTGAACCAGCTA 59.930 47.826 0.00 0.00 0.00 3.32
2444 2454 1.263217 CCTGTTGCAGGTCACGTTAAC 59.737 52.381 6.99 0.00 45.82 2.01
2485 2495 1.094073 GCGGCTCTGCATTCATGACT 61.094 55.000 0.00 0.00 34.15 3.41
2493 2503 5.093849 TCTGCATTCATGACTTGATCAGA 57.906 39.130 8.65 9.05 41.91 3.27
2503 2513 8.434733 TCATGACTTGATCAGAGATTTGATTC 57.565 34.615 10.61 0.00 41.91 2.52
2514 2524 4.704057 AGAGATTTGATTCTGCAAAGGTCC 59.296 41.667 0.00 0.00 40.68 4.46
2515 2525 4.410099 AGATTTGATTCTGCAAAGGTCCA 58.590 39.130 0.00 0.00 40.68 4.02
2516 2526 5.021458 AGATTTGATTCTGCAAAGGTCCAT 58.979 37.500 0.00 0.00 40.68 3.41
2517 2527 4.524316 TTTGATTCTGCAAAGGTCCATG 57.476 40.909 0.00 0.00 33.16 3.66
2544 2554 6.660949 AGGAAGGGTTCATTGTATTCTCAAAG 59.339 38.462 0.00 0.00 0.00 2.77
2548 2558 6.777580 AGGGTTCATTGTATTCTCAAAGTGTT 59.222 34.615 0.00 0.00 0.00 3.32
2549 2559 7.040409 AGGGTTCATTGTATTCTCAAAGTGTTC 60.040 37.037 0.00 0.00 0.00 3.18
2554 2564 3.745975 TGTATTCTCAAAGTGTTCGCCAG 59.254 43.478 0.00 0.00 0.00 4.85
2571 2581 2.631418 CAGCATTGGAGTCAAGCAAG 57.369 50.000 0.00 0.00 36.19 4.01
2601 2611 4.383052 CGTCATCTTATACTTGACCGATGC 59.617 45.833 0.00 0.00 37.13 3.91
2603 2613 4.277423 TCATCTTATACTTGACCGATGCGA 59.723 41.667 0.00 0.00 0.00 5.10
2606 2616 4.802039 TCTTATACTTGACCGATGCGAAAC 59.198 41.667 0.00 0.00 0.00 2.78
2614 2624 3.181480 TGACCGATGCGAAACTGATCATA 60.181 43.478 0.00 0.00 0.00 2.15
2615 2625 3.990469 GACCGATGCGAAACTGATCATAT 59.010 43.478 0.00 0.00 0.00 1.78
2617 2627 5.538118 ACCGATGCGAAACTGATCATATAA 58.462 37.500 0.00 0.00 0.00 0.98
2636 2646 8.946085 TCATATAACAGTTCCAAAGTTGACATC 58.054 33.333 0.00 0.00 0.00 3.06
2638 2648 3.804036 ACAGTTCCAAAGTTGACATCGA 58.196 40.909 0.00 0.00 0.00 3.59
2651 2661 2.094234 TGACATCGATTCGCTCCTTCAA 60.094 45.455 0.00 0.00 0.00 2.69
2652 2662 3.126831 GACATCGATTCGCTCCTTCAAT 58.873 45.455 0.00 0.00 0.00 2.57
2660 2670 5.561532 CGATTCGCTCCTTCAATGCATTTAT 60.562 40.000 9.83 0.00 0.00 1.40
2662 2672 3.316029 TCGCTCCTTCAATGCATTTATGG 59.684 43.478 9.83 13.67 0.00 2.74
2688 2698 7.270779 CAGATATGGATTCTTCAGTCTTGTCA 58.729 38.462 0.00 0.00 0.00 3.58
2691 2701 3.648067 TGGATTCTTCAGTCTTGTCAGGT 59.352 43.478 0.00 0.00 0.00 4.00
2736 2746 7.829378 AAACTTATGGTTCGTTCAGATAGAC 57.171 36.000 0.00 0.00 37.12 2.59
2760 2770 3.714144 ACTACCTAGCTCACTGACCAAT 58.286 45.455 0.00 0.00 0.00 3.16
2790 2800 1.961277 GCGGTATCTTGGCATCCGG 60.961 63.158 0.00 0.00 41.24 5.14
2803 2813 1.412710 GCATCCGGTCCACTCTCATTA 59.587 52.381 0.00 0.00 0.00 1.90
2820 2830 5.013079 TCTCATTAAAGAGCTTCCACAGGAA 59.987 40.000 2.77 0.00 36.11 3.36
2836 2846 5.906073 CACAGGAATTGGGGAAATTACATC 58.094 41.667 0.00 0.00 41.06 3.06
2853 2863 9.463443 AAATTACATCACTTGCAAACTTTAGAC 57.537 29.630 0.00 0.00 0.00 2.59
2856 2866 4.893424 TCACTTGCAAACTTTAGACACC 57.107 40.909 0.00 0.00 0.00 4.16
2877 2887 0.911525 AGTGGTCCATGGTCCAGAGG 60.912 60.000 28.38 6.78 34.27 3.69
2878 2888 1.160870 TGGTCCATGGTCCAGAGGT 59.839 57.895 24.79 0.00 0.00 3.85
2883 2893 0.178068 CCATGGTCCAGAGGTTACCG 59.822 60.000 2.57 0.00 35.98 4.02
2886 2896 1.988406 GGTCCAGAGGTTACCGCCT 60.988 63.158 0.51 0.00 42.53 5.52
2892 2902 1.041437 AGAGGTTACCGCCTAGCATC 58.959 55.000 0.51 0.00 39.34 3.91
2893 2903 0.318784 GAGGTTACCGCCTAGCATCG 60.319 60.000 0.00 0.00 39.34 3.84
2894 2904 1.954651 GGTTACCGCCTAGCATCGC 60.955 63.158 0.00 0.00 0.00 4.58
2923 2933 2.111878 GCCTGCGCCACCTGATAT 59.888 61.111 4.18 0.00 0.00 1.63
2927 2937 1.202639 CCTGCGCCACCTGATATTGTA 60.203 52.381 4.18 0.00 0.00 2.41
2946 2956 1.252175 ATAGACGCCGATCTGCAGAT 58.748 50.000 29.09 29.09 37.51 2.90
2949 2959 1.009829 GACGCCGATCTGCAGATTTT 58.990 50.000 29.26 9.56 34.37 1.82
2954 2964 3.728845 GCCGATCTGCAGATTTTAGGTA 58.271 45.455 29.26 0.00 34.37 3.08
2958 2968 5.511373 CCGATCTGCAGATTTTAGGTATCCA 60.511 44.000 29.26 0.00 34.37 3.41
2959 2969 5.636965 CGATCTGCAGATTTTAGGTATCCAG 59.363 44.000 29.26 6.45 34.37 3.86
2960 2970 5.296151 TCTGCAGATTTTAGGTATCCAGG 57.704 43.478 13.74 0.00 0.00 4.45
2961 2971 4.103153 TCTGCAGATTTTAGGTATCCAGGG 59.897 45.833 13.74 0.00 0.00 4.45
2978 2988 1.187567 GGGCCTGGTTCAGCAATTGT 61.188 55.000 0.84 0.00 0.00 2.71
2986 2996 5.132897 TGGTTCAGCAATTGTATTTCCAC 57.867 39.130 7.40 0.00 0.00 4.02
2988 2998 5.163513 GGTTCAGCAATTGTATTTCCACAG 58.836 41.667 7.40 0.00 0.00 3.66
2991 3001 3.763360 CAGCAATTGTATTTCCACAGGGA 59.237 43.478 7.40 0.00 43.03 4.20
2994 3004 4.947388 GCAATTGTATTTCCACAGGGACTA 59.053 41.667 7.40 0.00 44.89 2.59
3000 3010 5.766174 TGTATTTCCACAGGGACTACAAAAC 59.234 40.000 0.00 0.00 44.89 2.43
3003 3013 3.589641 TCCACAGGGACTACAAAACCTA 58.410 45.455 0.00 0.00 38.64 3.08
3006 3016 4.070009 CACAGGGACTACAAAACCTAACC 58.930 47.826 0.00 0.00 36.02 2.85
3018 3028 1.078143 CCTAACCTGCCTGCAGACC 60.078 63.158 20.29 6.33 46.30 3.85
3021 3031 1.133809 TAACCTGCCTGCAGACCCTT 61.134 55.000 20.29 8.24 46.30 3.95
3028 3038 1.940613 GCCTGCAGACCCTTAAATACG 59.059 52.381 17.39 0.00 0.00 3.06
3030 3040 3.195661 CCTGCAGACCCTTAAATACGTC 58.804 50.000 17.39 0.00 0.00 4.34
3033 3043 3.056678 TGCAGACCCTTAAATACGTCGAA 60.057 43.478 0.00 0.00 0.00 3.71
3045 3055 1.983972 ACGTCGAAGCTGATGAGAAC 58.016 50.000 0.00 0.00 0.00 3.01
3061 3071 6.825213 TGATGAGAACATGGTCAAATCCTTAG 59.175 38.462 14.46 0.00 36.82 2.18
3062 3072 5.500234 TGAGAACATGGTCAAATCCTTAGG 58.500 41.667 14.46 0.00 0.00 2.69
3069 3079 4.335416 TGGTCAAATCCTTAGGAAGCTTG 58.665 43.478 2.10 9.60 34.34 4.01
3075 3085 6.721208 TCAAATCCTTAGGAAGCTTGAAACAT 59.279 34.615 16.42 0.00 34.34 2.71
3091 3101 7.493971 GCTTGAAACATATGAAGAGCTTAGAGA 59.506 37.037 10.38 0.00 0.00 3.10
3111 3121 3.881688 AGATATTTGGTGTGCATGAGAGC 59.118 43.478 0.00 0.00 0.00 4.09
3143 3153 1.297968 TTGCCCTCATCCATCTCCAA 58.702 50.000 0.00 0.00 0.00 3.53
3150 3160 4.386088 CCCTCATCCATCTCCAAAATGAGT 60.386 45.833 9.16 0.00 41.00 3.41
3160 3170 1.067354 CCAAAATGAGTGGCCTTCTGC 60.067 52.381 3.32 0.00 40.16 4.26
3168 3178 4.722700 GGCCTTCTGCGCTTGGGA 62.723 66.667 9.73 0.00 42.61 4.37
3180 3190 1.808411 GCTTGGGAATTGTCAGTCGA 58.192 50.000 0.00 0.00 0.00 4.20
3183 3193 3.866651 CTTGGGAATTGTCAGTCGAGAT 58.133 45.455 0.00 0.00 0.00 2.75
3193 3203 5.774498 TGTCAGTCGAGATGCTAATGTAT 57.226 39.130 0.00 0.00 0.00 2.29
3194 3204 5.763088 TGTCAGTCGAGATGCTAATGTATC 58.237 41.667 0.00 0.00 35.87 2.24
3202 3212 6.015095 TCGAGATGCTAATGTATCATTGGACT 60.015 38.462 9.38 5.60 37.69 3.85
3215 3225 3.511146 TCATTGGACTTGGAGCCATTTTC 59.489 43.478 0.00 0.00 33.46 2.29
3218 3228 2.108075 TGGACTTGGAGCCATTTTCTCA 59.892 45.455 0.00 0.00 32.38 3.27
3222 3232 2.673775 TGGAGCCATTTTCTCAACCA 57.326 45.000 0.00 0.00 32.38 3.67
3226 3236 2.627699 GAGCCATTTTCTCAACCACCAA 59.372 45.455 0.00 0.00 0.00 3.67
3264 3274 3.998913 TCATTGACAGGGATGTTAGCA 57.001 42.857 0.00 0.00 0.00 3.49
3266 3276 4.264253 TCATTGACAGGGATGTTAGCAAG 58.736 43.478 0.00 0.00 0.00 4.01
3286 3296 2.025887 AGAGGTAAGTTGCCTTCATGGG 60.026 50.000 14.26 0.00 36.29 4.00
3291 3301 1.187567 AGTTGCCTTCATGGGTTGGC 61.188 55.000 10.66 10.66 45.10 4.52
3293 3303 3.451894 GCCTTCATGGGTTGGCCG 61.452 66.667 0.00 0.00 39.49 6.13
3302 3312 1.823899 GGGTTGGCCGCCTTGATAG 60.824 63.158 11.61 0.00 34.97 2.08
3307 3317 2.663188 GCCGCCTTGATAGCCTCG 60.663 66.667 0.00 0.00 0.00 4.63
3318 3328 2.507110 ATAGCCTCGTGCAGTTGCGT 62.507 55.000 0.00 0.00 45.83 5.24
3321 3331 1.837538 GCCTCGTGCAGTTGCGTTTA 61.838 55.000 0.00 0.00 45.83 2.01
3333 3343 5.319139 CAGTTGCGTTTATGTTCATCTGAG 58.681 41.667 0.00 0.00 31.43 3.35
3338 3348 4.093408 GCGTTTATGTTCATCTGAGCTCAA 59.907 41.667 18.85 9.34 0.00 3.02
3339 3349 5.726138 GCGTTTATGTTCATCTGAGCTCAAG 60.726 44.000 18.85 11.92 0.00 3.02
3349 3359 2.765135 TCTGAGCTCAAGGGAGATTCAG 59.235 50.000 18.85 14.97 45.76 3.02
3390 3400 3.450904 TCCCAGGCTGTTACATCTTACT 58.549 45.455 14.43 0.00 0.00 2.24
3393 3403 4.437239 CCAGGCTGTTACATCTTACTCTG 58.563 47.826 14.43 0.00 0.00 3.35
3396 3406 5.578727 CAGGCTGTTACATCTTACTCTGAAC 59.421 44.000 6.28 0.00 0.00 3.18
3407 3417 7.279536 ACATCTTACTCTGAACAATGCATACAG 59.720 37.037 0.00 8.07 0.00 2.74
3420 3430 1.061711 GCATACAGCGACAAGAGCTTG 59.938 52.381 8.60 8.60 44.06 4.01
3436 3446 1.546548 GCTTGACCTTTCCAGAAGGCT 60.547 52.381 4.77 0.00 41.10 4.58
3462 3472 5.552870 TTCCAGTTCTTAAGAAGCTGAGT 57.447 39.130 29.59 10.83 36.35 3.41
3471 3481 7.891183 TCTTAAGAAGCTGAGTTTACATGAC 57.109 36.000 1.68 0.00 0.00 3.06
3472 3482 7.671302 TCTTAAGAAGCTGAGTTTACATGACT 58.329 34.615 1.68 0.00 0.00 3.41
3489 3499 4.640771 TGACTTGCCTAACCTTTCTCAT 57.359 40.909 0.00 0.00 0.00 2.90
3492 3502 5.012664 TGACTTGCCTAACCTTTCTCATGTA 59.987 40.000 0.00 0.00 0.00 2.29
3500 3510 7.386851 CCTAACCTTTCTCATGTAGAGTTTCA 58.613 38.462 0.00 0.00 44.98 2.69
3527 3537 7.496346 AAGGGAGTCTTGTACATCTAAATGA 57.504 36.000 0.00 0.00 34.05 2.57
3528 3538 7.118496 AGGGAGTCTTGTACATCTAAATGAG 57.882 40.000 0.00 0.00 36.67 2.90
3529 3539 5.755861 GGGAGTCTTGTACATCTAAATGAGC 59.244 44.000 0.00 0.00 36.67 4.26
3535 3545 9.757227 GTCTTGTACATCTAAATGAGCTAATCT 57.243 33.333 0.00 0.00 36.67 2.40
3552 3562 2.380084 TCTTAGGCCGTTGTGATGAC 57.620 50.000 0.00 0.00 0.00 3.06
3589 3599 0.247736 AGGCATCGAGAACCTCACAC 59.752 55.000 0.00 0.00 0.00 3.82
3594 3604 1.040646 TCGAGAACCTCACACAGCTT 58.959 50.000 0.00 0.00 0.00 3.74
3636 3646 7.558161 TGAAATGCCAAGTGAGATAATACAG 57.442 36.000 0.00 0.00 0.00 2.74
3661 3671 9.171877 AGAAGATTCAAGATGGAGAAACATTAC 57.828 33.333 0.00 0.00 0.00 1.89
3688 3698 4.376819 GGAATTATGAAGATTCTCAGCGCG 60.377 45.833 0.00 0.00 34.65 6.86
3725 3735 5.428457 AGAACATCCACTGGTATAATGGACA 59.572 40.000 0.00 0.00 45.15 4.02
3762 3772 7.589958 AACAATTTACACCAACCTATTCACA 57.410 32.000 0.00 0.00 0.00 3.58
3842 3853 3.364549 TGGGCACTAAAAAGATGGATGG 58.635 45.455 0.00 0.00 0.00 3.51
3849 3860 5.127519 CACTAAAAAGATGGATGGGCATCAA 59.872 40.000 0.00 0.00 39.54 2.57
3851 3862 4.950205 AAAAGATGGATGGGCATCAATC 57.050 40.909 0.00 0.00 44.81 2.67
3881 3892 2.296190 GGAGGCGTCATTTTGAGGTTTT 59.704 45.455 8.91 0.00 34.95 2.43
3882 3893 3.308530 GAGGCGTCATTTTGAGGTTTTG 58.691 45.455 0.52 0.00 34.95 2.44
3936 3947 0.462225 TTTGACGGTTCAGGCAACGA 60.462 50.000 0.00 0.00 39.13 3.85
3940 3951 2.317609 CGGTTCAGGCAACGACCAG 61.318 63.158 0.00 0.00 46.39 4.00
3943 3954 0.951040 GTTCAGGCAACGACCAGAGG 60.951 60.000 0.00 0.00 46.39 3.69
3944 3955 1.407656 TTCAGGCAACGACCAGAGGT 61.408 55.000 0.00 0.00 46.39 3.85
3946 3957 2.140792 AGGCAACGACCAGAGGTGT 61.141 57.895 0.00 0.00 46.39 4.16
3947 3958 1.668151 GGCAACGACCAGAGGTGTC 60.668 63.158 0.00 0.00 35.25 3.67
3980 3993 1.056660 GGACCCTCACCTCTTTGTCA 58.943 55.000 0.00 0.00 0.00 3.58
3981 3994 1.630878 GGACCCTCACCTCTTTGTCAT 59.369 52.381 0.00 0.00 0.00 3.06
4034 4047 2.657297 GCCATGAAACAAGGAGGCA 58.343 52.632 0.00 0.00 41.63 4.75
4036 4049 0.523072 CCATGAAACAAGGAGGCACG 59.477 55.000 0.00 0.00 0.00 5.34
4037 4050 1.238439 CATGAAACAAGGAGGCACGT 58.762 50.000 0.00 0.00 0.00 4.49
4039 4052 0.107410 TGAAACAAGGAGGCACGTGT 60.107 50.000 18.38 0.00 0.00 4.49
4057 4129 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
4058 4130 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
4076 4148 0.035152 TGTCCTCAATGCTTCGCCAT 60.035 50.000 0.00 0.00 0.00 4.40
4077 4149 0.379669 GTCCTCAATGCTTCGCCATG 59.620 55.000 0.00 0.00 0.00 3.66
4094 4166 2.503331 CATGGTGTTGTTGTAGAGGCA 58.497 47.619 0.00 0.00 0.00 4.75
4103 4175 2.290260 TGTTGTAGAGGCAGGGTTCATG 60.290 50.000 0.00 0.00 0.00 3.07
4117 4189 5.824624 CAGGGTTCATGTATTTGTATCAGCT 59.175 40.000 0.00 0.00 0.00 4.24
4122 4194 7.859377 GGTTCATGTATTTGTATCAGCTTGATG 59.141 37.037 8.40 0.00 37.70 3.07
4188 4261 4.794003 GCCCAGATATTGTAAAGCATGCAC 60.794 45.833 21.98 10.22 0.00 4.57
4201 4274 8.344831 TGTAAAGCATGCACTGATATACAAATC 58.655 33.333 21.98 0.00 0.00 2.17
4224 4297 9.471702 AATCCAATTAGTGAATGAAGTTGATCT 57.528 29.630 0.00 0.00 0.00 2.75
4230 4303 8.675705 TTAGTGAATGAAGTTGATCTTGAACA 57.324 30.769 0.00 0.00 36.40 3.18
4306 4382 2.092753 ACATTGGCAGTGATCTAGGGTG 60.093 50.000 17.47 0.00 0.00 4.61
4334 4410 1.242076 GCTGGGGCTGCACATATTAG 58.758 55.000 3.46 0.00 35.22 1.73
4345 4421 6.049149 GCTGCACATATTAGTACAGGAGAAA 58.951 40.000 0.00 0.00 34.23 2.52
4356 4432 2.622436 ACAGGAGAAATTAGTCGCTGC 58.378 47.619 0.00 0.00 0.00 5.25
4366 4442 1.725641 TAGTCGCTGCATTTCACAGG 58.274 50.000 0.00 0.00 35.62 4.00
4374 4450 3.737774 GCTGCATTTCACAGGAAAAAGAC 59.262 43.478 0.00 0.00 45.52 3.01
4377 4453 5.291178 TGCATTTCACAGGAAAAAGACATG 58.709 37.500 0.00 0.00 45.52 3.21
4462 4538 4.032960 TGCTCATCAGTTGGTTTACCAT 57.967 40.909 1.81 0.00 46.97 3.55
4482 4562 4.453478 CCATATGTTCTCGAATGGTGATGG 59.547 45.833 1.24 1.93 35.23 3.51
4587 5138 9.585099 GCACAATGGATTAACAGATAAATGAAA 57.415 29.630 0.00 0.00 0.00 2.69
4629 5192 8.083828 ACATTCTGAGATACCTCTTTACACAT 57.916 34.615 0.00 0.00 40.10 3.21
4630 5193 9.201989 ACATTCTGAGATACCTCTTTACACATA 57.798 33.333 0.00 0.00 40.10 2.29
4633 5196 8.589701 TCTGAGATACCTCTTTACACATAACA 57.410 34.615 0.00 0.00 40.10 2.41
4664 5291 1.272490 AGACGGAGCGAACTGAATTCA 59.728 47.619 8.12 8.12 37.12 2.57
4665 5292 2.066262 GACGGAGCGAACTGAATTCAA 58.934 47.619 9.88 0.00 37.12 2.69
4676 5303 6.402118 GCGAACTGAATTCAAGCTATTACACA 60.402 38.462 9.88 0.00 37.12 3.72
4718 5345 2.943449 GGAGACGTAGAAGGGAACAG 57.057 55.000 0.00 0.00 0.00 3.16
4727 5354 6.104665 ACGTAGAAGGGAACAGTTATTAAGC 58.895 40.000 0.00 0.00 0.00 3.09
4730 5357 4.291249 AGAAGGGAACAGTTATTAAGCCCA 59.709 41.667 7.96 0.00 36.55 5.36
4735 5362 5.254115 GGAACAGTTATTAAGCCCACTTCT 58.746 41.667 0.00 0.00 37.33 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 8.603242 ACGTGACTTGTACTTTGATCTTTATT 57.397 30.769 0.00 0.00 0.00 1.40
70 71 7.939039 TGTCAACCTCAGAGATGTTTTTCTATT 59.061 33.333 0.00 0.00 0.00 1.73
75 76 4.580580 GGTGTCAACCTCAGAGATGTTTTT 59.419 41.667 0.00 0.00 43.84 1.94
117 118 1.745115 GCTGCTATGGTTGTGCCGA 60.745 57.895 0.00 0.00 41.21 5.54
124 125 3.370840 TCTTTGATGGCTGCTATGGTT 57.629 42.857 2.27 0.00 0.00 3.67
129 130 4.083324 CGTTCTTTTCTTTGATGGCTGCTA 60.083 41.667 0.00 0.00 0.00 3.49
138 139 4.210537 GTGATCCGTCGTTCTTTTCTTTGA 59.789 41.667 0.00 0.00 0.00 2.69
140 141 3.497262 GGTGATCCGTCGTTCTTTTCTTT 59.503 43.478 0.00 0.00 0.00 2.52
151 152 0.741326 AGTGATGAGGTGATCCGTCG 59.259 55.000 0.00 0.00 39.05 5.12
229 230 1.066908 CGGCAAAGGCTTCACTTTTGA 59.933 47.619 0.00 0.00 38.56 2.69
243 244 4.545610 GATCTGATTTGTTCAACGGCAAA 58.454 39.130 0.00 0.00 38.68 3.68
256 257 1.463674 GTGTTGCCCCGATCTGATTT 58.536 50.000 0.00 0.00 0.00 2.17
286 287 1.410517 GCCAGATCAGGAGTTCGATGA 59.589 52.381 8.61 0.00 0.00 2.92
298 299 2.531428 TGGTGGGGTGCCAGATCA 60.531 61.111 0.00 0.00 0.00 2.92
338 339 0.464036 TCGTGGATGCAGGTATGGTC 59.536 55.000 6.81 0.00 0.00 4.02
380 382 3.120683 GCATCGACGACATTTGAAAGACA 60.121 43.478 0.00 0.00 0.00 3.41
389 391 0.246360 TGGTCTGCATCGACGACATT 59.754 50.000 0.00 0.00 34.75 2.71
428 430 1.359168 GTGGAGTTTGGGAGGTAGGT 58.641 55.000 0.00 0.00 0.00 3.08
429 431 0.249398 CGTGGAGTTTGGGAGGTAGG 59.751 60.000 0.00 0.00 0.00 3.18
455 457 4.072088 CGACGGCGTTTGCTCCAC 62.072 66.667 16.19 0.00 42.25 4.02
477 479 4.436998 GTGTCCTCGGGCTCCACG 62.437 72.222 0.00 0.00 0.00 4.94
479 481 2.284625 ATGTGTCCTCGGGCTCCA 60.285 61.111 0.00 0.00 0.00 3.86
503 505 2.746277 GGCGGTGGCATTCTCGTT 60.746 61.111 0.00 0.00 42.47 3.85
509 511 4.992740 TGGCTTGGCGGTGGCATT 62.993 61.111 0.00 0.00 42.47 3.56
522 527 5.374921 CAGTCTATTCAATCAAGGATGGCT 58.625 41.667 0.00 0.00 0.00 4.75
533 538 6.953520 TGGATTTGGAAACCAGTCTATTCAAT 59.046 34.615 0.00 0.00 33.81 2.57
539 544 4.325030 GGGATGGATTTGGAAACCAGTCTA 60.325 45.833 0.00 0.00 37.12 2.59
626 631 4.287781 TTGACTTCGGCGGCGACA 62.288 61.111 34.85 25.16 0.00 4.35
655 660 6.500751 TCCCTTGTAGTCTAGATTTTCAGGTT 59.499 38.462 0.00 0.00 0.00 3.50
660 665 9.939802 TTTTACTCCCTTGTAGTCTAGATTTTC 57.060 33.333 0.00 0.00 0.00 2.29
776 782 4.079787 AGCCATTGTAAGAAGAGGCCAATA 60.080 41.667 5.01 0.00 42.97 1.90
787 793 4.843728 CTGAAACCCTAGCCATTGTAAGA 58.156 43.478 0.00 0.00 0.00 2.10
790 796 2.999331 GCTGAAACCCTAGCCATTGTA 58.001 47.619 0.00 0.00 33.89 2.41
791 797 1.839424 GCTGAAACCCTAGCCATTGT 58.161 50.000 0.00 0.00 33.89 2.71
806 812 1.118965 TTTCCACTCGTCCTGGCTGA 61.119 55.000 0.00 0.00 0.00 4.26
832 842 8.637986 ACAGCTAACCATGAAAAACAAGAATAA 58.362 29.630 0.00 0.00 0.00 1.40
833 843 8.177119 ACAGCTAACCATGAAAAACAAGAATA 57.823 30.769 0.00 0.00 0.00 1.75
834 844 7.054491 ACAGCTAACCATGAAAAACAAGAAT 57.946 32.000 0.00 0.00 0.00 2.40
835 845 6.463995 ACAGCTAACCATGAAAAACAAGAA 57.536 33.333 0.00 0.00 0.00 2.52
836 846 6.460953 GGAACAGCTAACCATGAAAAACAAGA 60.461 38.462 0.00 0.00 0.00 3.02
837 847 5.691754 GGAACAGCTAACCATGAAAAACAAG 59.308 40.000 0.00 0.00 0.00 3.16
838 848 5.452636 GGGAACAGCTAACCATGAAAAACAA 60.453 40.000 0.00 0.00 0.00 2.83
839 849 4.038642 GGGAACAGCTAACCATGAAAAACA 59.961 41.667 0.00 0.00 0.00 2.83
840 850 4.038642 TGGGAACAGCTAACCATGAAAAAC 59.961 41.667 0.00 0.00 35.01 2.43
841 851 4.219115 TGGGAACAGCTAACCATGAAAAA 58.781 39.130 0.00 0.00 35.01 1.94
842 852 3.838565 TGGGAACAGCTAACCATGAAAA 58.161 40.909 0.00 0.00 35.01 2.29
843 853 3.517296 TGGGAACAGCTAACCATGAAA 57.483 42.857 0.00 0.00 35.01 2.69
856 866 3.694043 TGAATTGATCGTCTGGGAACA 57.306 42.857 0.00 0.00 39.59 3.18
857 867 4.215399 TGTTTGAATTGATCGTCTGGGAAC 59.785 41.667 0.00 0.00 0.00 3.62
858 868 4.393834 TGTTTGAATTGATCGTCTGGGAA 58.606 39.130 0.00 0.00 0.00 3.97
859 869 4.014569 TGTTTGAATTGATCGTCTGGGA 57.985 40.909 0.00 0.00 0.00 4.37
860 870 4.764679 TTGTTTGAATTGATCGTCTGGG 57.235 40.909 0.00 0.00 0.00 4.45
887 897 9.807921 TCTGGGAATAGTTTCTTTTAGTTGATT 57.192 29.630 0.00 0.00 32.16 2.57
888 898 9.232473 GTCTGGGAATAGTTTCTTTTAGTTGAT 57.768 33.333 0.00 0.00 32.16 2.57
889 899 7.386848 CGTCTGGGAATAGTTTCTTTTAGTTGA 59.613 37.037 0.00 0.00 32.16 3.18
890 900 7.360946 CCGTCTGGGAATAGTTTCTTTTAGTTG 60.361 40.741 0.00 0.00 38.47 3.16
891 901 6.653740 CCGTCTGGGAATAGTTTCTTTTAGTT 59.346 38.462 0.00 0.00 38.47 2.24
892 902 6.171213 CCGTCTGGGAATAGTTTCTTTTAGT 58.829 40.000 0.00 0.00 38.47 2.24
893 903 6.663944 CCGTCTGGGAATAGTTTCTTTTAG 57.336 41.667 0.00 0.00 38.47 1.85
909 919 2.940994 TCTCTCTCTATCCCGTCTGG 57.059 55.000 0.00 0.00 0.00 3.86
910 920 3.435327 CGATTCTCTCTCTATCCCGTCTG 59.565 52.174 0.00 0.00 0.00 3.51
911 921 3.325425 TCGATTCTCTCTCTATCCCGTCT 59.675 47.826 0.00 0.00 0.00 4.18
912 922 3.666274 TCGATTCTCTCTCTATCCCGTC 58.334 50.000 0.00 0.00 0.00 4.79
913 923 3.773418 TCGATTCTCTCTCTATCCCGT 57.227 47.619 0.00 0.00 0.00 5.28
914 924 4.201773 CGATTCGATTCTCTCTCTATCCCG 60.202 50.000 0.00 0.00 0.00 5.14
915 925 4.438200 GCGATTCGATTCTCTCTCTATCCC 60.438 50.000 10.88 0.00 0.00 3.85
916 926 4.394920 AGCGATTCGATTCTCTCTCTATCC 59.605 45.833 10.88 0.00 0.00 2.59
917 927 5.323900 CAGCGATTCGATTCTCTCTCTATC 58.676 45.833 10.88 0.00 0.00 2.08
918 928 4.379394 GCAGCGATTCGATTCTCTCTCTAT 60.379 45.833 10.88 0.00 0.00 1.98
919 929 3.058570 GCAGCGATTCGATTCTCTCTCTA 60.059 47.826 10.88 0.00 0.00 2.43
920 930 2.287547 GCAGCGATTCGATTCTCTCTCT 60.288 50.000 10.88 0.00 0.00 3.10
921 931 2.050691 GCAGCGATTCGATTCTCTCTC 58.949 52.381 10.88 0.00 0.00 3.20
922 932 1.269517 GGCAGCGATTCGATTCTCTCT 60.270 52.381 10.88 0.00 0.00 3.10
923 933 1.135867 GGCAGCGATTCGATTCTCTC 58.864 55.000 10.88 0.00 0.00 3.20
924 934 0.596083 CGGCAGCGATTCGATTCTCT 60.596 55.000 10.88 0.21 0.00 3.10
925 935 1.849306 CGGCAGCGATTCGATTCTC 59.151 57.895 10.88 0.00 0.00 2.87
926 936 2.240500 GCGGCAGCGATTCGATTCT 61.241 57.895 10.88 0.00 0.00 2.40
927 937 2.246687 GCGGCAGCGATTCGATTC 59.753 61.111 10.88 0.00 0.00 2.52
928 938 3.272334 GGCGGCAGCGATTCGATT 61.272 61.111 10.88 0.00 46.35 3.34
929 939 4.529219 TGGCGGCAGCGATTCGAT 62.529 61.111 7.97 0.00 46.35 3.59
932 942 3.567797 GACTGGCGGCAGCGATTC 61.568 66.667 36.06 22.98 46.35 2.52
933 943 3.899981 TTGACTGGCGGCAGCGATT 62.900 57.895 36.06 18.99 46.35 3.34
934 944 3.899981 TTTGACTGGCGGCAGCGAT 62.900 57.895 36.06 19.38 46.35 4.58
935 945 4.617520 TTTGACTGGCGGCAGCGA 62.618 61.111 36.06 24.88 46.35 4.93
936 946 4.093952 CTTTGACTGGCGGCAGCG 62.094 66.667 36.06 17.60 46.35 5.18
937 947 2.669569 TCTTTGACTGGCGGCAGC 60.670 61.111 36.06 27.59 44.18 5.25
938 948 0.603707 TTCTCTTTGACTGGCGGCAG 60.604 55.000 34.75 34.75 0.00 4.85
939 949 0.036732 ATTCTCTTTGACTGGCGGCA 59.963 50.000 12.58 12.58 0.00 5.69
940 950 0.729690 GATTCTCTTTGACTGGCGGC 59.270 55.000 0.00 0.00 0.00 6.53
941 951 1.002366 CGATTCTCTTTGACTGGCGG 58.998 55.000 0.00 0.00 0.00 6.13
942 952 0.371645 GCGATTCTCTTTGACTGGCG 59.628 55.000 0.00 0.00 0.00 5.69
943 953 1.396301 CAGCGATTCTCTTTGACTGGC 59.604 52.381 0.00 0.00 31.17 4.85
944 954 2.670414 GTCAGCGATTCTCTTTGACTGG 59.330 50.000 0.00 0.00 36.21 4.00
945 955 3.583806 AGTCAGCGATTCTCTTTGACTG 58.416 45.455 4.79 0.00 44.80 3.51
946 956 3.951775 AGTCAGCGATTCTCTTTGACT 57.048 42.857 0.00 0.00 42.53 3.41
947 957 3.424170 GCAAGTCAGCGATTCTCTTTGAC 60.424 47.826 0.00 0.00 38.68 3.18
948 958 2.738846 GCAAGTCAGCGATTCTCTTTGA 59.261 45.455 0.00 0.00 0.00 2.69
949 959 2.159599 GGCAAGTCAGCGATTCTCTTTG 60.160 50.000 0.00 0.00 34.64 2.77
950 960 2.079925 GGCAAGTCAGCGATTCTCTTT 58.920 47.619 0.00 0.00 34.64 2.52
951 961 1.002430 TGGCAAGTCAGCGATTCTCTT 59.998 47.619 0.00 0.00 34.64 2.85
952 962 0.610174 TGGCAAGTCAGCGATTCTCT 59.390 50.000 0.00 0.00 34.64 3.10
953 963 0.723981 GTGGCAAGTCAGCGATTCTC 59.276 55.000 0.00 0.00 34.64 2.87
954 964 0.035317 TGTGGCAAGTCAGCGATTCT 59.965 50.000 0.00 0.00 34.64 2.40
955 965 0.166814 GTGTGGCAAGTCAGCGATTC 59.833 55.000 0.00 0.00 34.64 2.52
956 966 1.237285 GGTGTGGCAAGTCAGCGATT 61.237 55.000 0.00 0.00 34.64 3.34
957 967 1.672356 GGTGTGGCAAGTCAGCGAT 60.672 57.895 0.00 0.00 34.64 4.58
958 968 2.280797 GGTGTGGCAAGTCAGCGA 60.281 61.111 0.00 0.00 34.64 4.93
959 969 2.591429 TGGTGTGGCAAGTCAGCG 60.591 61.111 0.00 0.00 35.23 5.18
960 970 2.896801 CGTGGTGTGGCAAGTCAGC 61.897 63.158 0.00 0.00 0.00 4.26
961 971 2.896801 GCGTGGTGTGGCAAGTCAG 61.897 63.158 0.00 0.00 0.00 3.51
962 972 2.899838 GCGTGGTGTGGCAAGTCA 60.900 61.111 0.00 0.00 0.00 3.41
963 973 2.896801 CTGCGTGGTGTGGCAAGTC 61.897 63.158 0.00 0.00 38.94 3.01
964 974 2.901840 CTGCGTGGTGTGGCAAGT 60.902 61.111 0.00 0.00 38.94 3.16
965 975 4.332637 GCTGCGTGGTGTGGCAAG 62.333 66.667 0.00 0.00 38.94 4.01
966 976 4.873810 AGCTGCGTGGTGTGGCAA 62.874 61.111 0.00 0.00 38.94 4.52
986 996 2.782222 GCCATGACCTCGCCGTAGA 61.782 63.158 0.00 0.00 0.00 2.59
1365 1375 3.900892 CGGATGCCGTACCGCTCT 61.901 66.667 7.70 0.00 42.73 4.09
1432 1442 2.494918 CTTCTGGCCTACGACGGG 59.505 66.667 3.32 0.00 0.00 5.28
1445 1455 1.153469 GCTGCTTCCGCTAGCTTCT 60.153 57.895 13.93 0.00 41.76 2.85
1471 1481 0.394352 ACGATTTCCCCATGCTCCAC 60.394 55.000 0.00 0.00 0.00 4.02
1474 1484 1.160329 CCGACGATTTCCCCATGCTC 61.160 60.000 0.00 0.00 0.00 4.26
1477 1487 2.534019 CGCCGACGATTTCCCCATG 61.534 63.158 0.00 0.00 43.93 3.66
1495 1505 4.389576 CCTTCTGTGCGCCGCAAC 62.390 66.667 15.84 9.16 41.47 4.17
1514 1524 2.499693 TCCGTGAGCCATTTCATCAGTA 59.500 45.455 0.00 0.00 0.00 2.74
1639 1649 1.078201 CATGCAGCGCAGTCGAAGTA 61.078 55.000 11.47 0.00 43.65 2.24
1656 1666 0.544357 TCTTGGAGACGGACACCCAT 60.544 55.000 0.00 0.00 0.00 4.00
1686 1696 5.196695 GCAATTTTCCTTAGGAGGTCATCT 58.803 41.667 0.00 0.00 43.97 2.90
1695 1705 6.128200 GCAATTCTTTGGCAATTTTCCTTAGG 60.128 38.462 0.00 0.00 33.22 2.69
1806 1816 6.174720 TCCAGCAATAATAGGTACCTCTTG 57.825 41.667 20.32 17.72 0.00 3.02
1816 1826 5.646793 CCCAGACATCATCCAGCAATAATAG 59.353 44.000 0.00 0.00 0.00 1.73
1818 1828 4.105217 TCCCAGACATCATCCAGCAATAAT 59.895 41.667 0.00 0.00 0.00 1.28
1846 1856 1.333619 GCGGATTTCATACCACGCATT 59.666 47.619 0.00 0.00 45.57 3.56
1974 1984 2.089980 GACCATGCTTCTTGCTCACAT 58.910 47.619 0.00 0.00 43.37 3.21
1975 1985 1.527034 GACCATGCTTCTTGCTCACA 58.473 50.000 0.00 0.00 43.37 3.58
1976 1986 0.807496 GGACCATGCTTCTTGCTCAC 59.193 55.000 0.00 0.00 43.37 3.51
2020 2030 1.882352 GCACTCCCGGTTGTCATCTTT 60.882 52.381 0.00 0.00 0.00 2.52
2065 2075 3.550437 ACATCTGCCCAGTATCTTCAC 57.450 47.619 0.00 0.00 0.00 3.18
2144 2154 4.021192 GGACATTCTTCCAAGCAAATTCCA 60.021 41.667 0.00 0.00 35.49 3.53
2353 2363 0.041684 CCCTGGCCCTTTTCCTCAAT 59.958 55.000 0.00 0.00 0.00 2.57
2361 2371 1.914764 CAATGTGCCCTGGCCCTTT 60.915 57.895 5.57 0.00 41.09 3.11
2377 2387 0.755327 TCATCCGCGATCTCCTCCAA 60.755 55.000 8.23 0.00 0.00 3.53
2388 2398 1.217882 GGTTCAGGTAATCATCCGCG 58.782 55.000 0.00 0.00 0.00 6.46
2404 2414 1.939838 GCTACGTTGCACTAGCTGGTT 60.940 52.381 17.16 0.00 42.74 3.67
2412 2422 2.616969 CAACAGGCTACGTTGCACT 58.383 52.632 22.89 14.37 37.53 4.40
2444 2454 5.218139 GCTTCACTCTTCCAAACTCATTTG 58.782 41.667 0.00 0.00 44.19 2.32
2458 2468 1.897225 ATGCAGAGCCGCTTCACTCT 61.897 55.000 0.00 0.00 44.06 3.24
2462 2472 0.393402 ATGAATGCAGAGCCGCTTCA 60.393 50.000 0.00 0.00 35.24 3.02
2466 2476 1.094073 AGTCATGAATGCAGAGCCGC 61.094 55.000 0.00 0.00 0.00 6.53
2485 2495 7.362660 CCTTTGCAGAATCAAATCTCTGATCAA 60.363 37.037 0.00 0.00 41.38 2.57
2493 2503 4.410099 TGGACCTTTGCAGAATCAAATCT 58.590 39.130 0.00 0.00 35.64 2.40
2503 2513 2.205022 TCCTTCATGGACCTTTGCAG 57.795 50.000 0.00 0.00 40.56 4.41
2514 2524 6.604795 AGAATACAATGAACCCTTCCTTCATG 59.395 38.462 0.00 0.00 38.19 3.07
2515 2525 6.735556 AGAATACAATGAACCCTTCCTTCAT 58.264 36.000 0.00 0.00 39.56 2.57
2516 2526 6.139679 AGAATACAATGAACCCTTCCTTCA 57.860 37.500 0.00 0.00 32.24 3.02
2517 2527 6.180472 TGAGAATACAATGAACCCTTCCTTC 58.820 40.000 0.00 0.00 0.00 3.46
2531 2541 4.130857 TGGCGAACACTTTGAGAATACAA 58.869 39.130 0.00 0.00 0.00 2.41
2544 2554 1.237285 ACTCCAATGCTGGCGAACAC 61.237 55.000 0.00 0.00 43.17 3.32
2548 2558 0.674581 CTTGACTCCAATGCTGGCGA 60.675 55.000 0.00 0.00 43.17 5.54
2549 2559 1.798735 CTTGACTCCAATGCTGGCG 59.201 57.895 0.00 0.00 43.17 5.69
2554 2564 3.648339 TTTCTTGCTTGACTCCAATGC 57.352 42.857 0.00 0.00 0.00 3.56
2571 2581 7.306632 CGGTCAAGTATAAGATGACGGATTTTC 60.307 40.741 12.31 0.00 43.19 2.29
2606 2616 9.166173 TCAACTTTGGAACTGTTATATGATCAG 57.834 33.333 0.09 0.00 35.60 2.90
2614 2624 5.995282 TCGATGTCAACTTTGGAACTGTTAT 59.005 36.000 0.00 0.00 0.00 1.89
2615 2625 5.361427 TCGATGTCAACTTTGGAACTGTTA 58.639 37.500 0.00 0.00 0.00 2.41
2617 2627 3.804036 TCGATGTCAACTTTGGAACTGT 58.196 40.909 0.00 0.00 0.00 3.55
2629 2639 2.094234 TGAAGGAGCGAATCGATGTCAA 60.094 45.455 6.91 0.00 0.00 3.18
2636 2646 1.009078 TGCATTGAAGGAGCGAATCG 58.991 50.000 0.00 0.00 0.00 3.34
2638 2648 5.508489 CCATAAATGCATTGAAGGAGCGAAT 60.508 40.000 13.82 0.00 0.00 3.34
2651 2661 6.895756 AGAATCCATATCTGCCATAAATGCAT 59.104 34.615 0.00 0.00 38.22 3.96
2652 2662 6.250711 AGAATCCATATCTGCCATAAATGCA 58.749 36.000 0.00 0.00 37.17 3.96
2660 2670 4.657504 AGACTGAAGAATCCATATCTGCCA 59.342 41.667 0.00 0.00 0.00 4.92
2662 2672 6.054295 ACAAGACTGAAGAATCCATATCTGC 58.946 40.000 0.00 0.00 0.00 4.26
2709 2719 9.932207 TCTATCTGAACGAACCATAAGTTTAAA 57.068 29.630 0.00 0.00 39.40 1.52
2736 2746 3.258372 TGGTCAGTGAGCTAGGTAGTTTG 59.742 47.826 22.08 0.00 0.00 2.93
2760 2770 5.601662 CCAAGATACCGCAGATTAAGAAGA 58.398 41.667 0.00 0.00 0.00 2.87
2790 2800 4.873259 GGAAGCTCTTTAATGAGAGTGGAC 59.127 45.833 19.63 3.64 44.03 4.02
2803 2813 3.160269 CCAATTCCTGTGGAAGCTCTTT 58.840 45.455 5.27 0.00 45.48 2.52
2820 2830 4.776837 TGCAAGTGATGTAATTTCCCCAAT 59.223 37.500 0.00 0.00 0.00 3.16
2826 2836 9.677567 TCTAAAGTTTGCAAGTGATGTAATTTC 57.322 29.630 0.00 0.00 33.42 2.17
2827 2837 9.463443 GTCTAAAGTTTGCAAGTGATGTAATTT 57.537 29.630 0.00 0.00 33.42 1.82
2829 2839 8.076178 GTGTCTAAAGTTTGCAAGTGATGTAAT 58.924 33.333 0.00 0.00 33.42 1.89
2836 2846 4.630894 TGGTGTCTAAAGTTTGCAAGTG 57.369 40.909 0.00 0.00 0.00 3.16
2856 2866 0.692476 TCTGGACCATGGACCACTTG 59.308 55.000 29.05 20.29 35.24 3.16
2867 2877 2.288025 GGCGGTAACCTCTGGACCA 61.288 63.158 0.00 0.00 32.39 4.02
2877 2887 3.626472 GCGATGCTAGGCGGTAAC 58.374 61.111 0.00 0.00 0.00 2.50
2883 2893 2.279784 AGCTTCGCGATGCTAGGC 60.280 61.111 38.50 21.91 39.62 3.93
2886 2896 0.455815 TCTTGAGCTTCGCGATGCTA 59.544 50.000 39.05 27.32 41.18 3.49
2892 2902 2.125753 AGGCTCTTGAGCTTCGCG 60.126 61.111 20.12 0.00 34.73 5.87
2893 2903 2.748843 GCAGGCTCTTGAGCTTCGC 61.749 63.158 20.12 15.93 34.73 4.70
2894 2904 2.451167 CGCAGGCTCTTGAGCTTCG 61.451 63.158 20.12 16.22 34.73 3.79
2895 2905 2.748843 GCGCAGGCTCTTGAGCTTC 61.749 63.158 20.12 6.67 40.20 3.86
2923 2933 1.679153 TGCAGATCGGCGTCTATACAA 59.321 47.619 13.25 0.00 36.28 2.41
2927 2937 1.252175 ATCTGCAGATCGGCGTCTAT 58.748 50.000 23.75 0.00 36.28 1.98
2958 2968 0.901580 CAATTGCTGAACCAGGCCCT 60.902 55.000 0.00 0.00 31.21 5.19
2959 2969 1.187567 ACAATTGCTGAACCAGGCCC 61.188 55.000 5.05 0.00 31.21 5.80
2960 2970 1.544724 TACAATTGCTGAACCAGGCC 58.455 50.000 5.05 0.00 31.21 5.19
2961 2971 3.874392 AATACAATTGCTGAACCAGGC 57.126 42.857 5.05 0.00 31.21 4.85
2968 2978 3.763360 CCCTGTGGAAATACAATTGCTGA 59.237 43.478 5.05 0.00 0.00 4.26
2978 2988 5.073965 AGGTTTTGTAGTCCCTGTGGAAATA 59.926 40.000 0.00 0.00 44.07 1.40
2986 2996 4.324267 CAGGTTAGGTTTTGTAGTCCCTG 58.676 47.826 0.00 0.00 0.00 4.45
2988 2998 3.079578 GCAGGTTAGGTTTTGTAGTCCC 58.920 50.000 0.00 0.00 0.00 4.46
2991 3001 3.751518 CAGGCAGGTTAGGTTTTGTAGT 58.248 45.455 0.00 0.00 0.00 2.73
2994 3004 1.328279 GCAGGCAGGTTAGGTTTTGT 58.672 50.000 0.00 0.00 0.00 2.83
3000 3010 1.078143 GGTCTGCAGGCAGGTTAGG 60.078 63.158 21.89 0.00 43.75 2.69
3003 3013 1.133809 TAAGGGTCTGCAGGCAGGTT 61.134 55.000 21.89 12.10 43.75 3.50
3006 3016 2.134789 ATTTAAGGGTCTGCAGGCAG 57.865 50.000 21.89 14.97 44.86 4.85
3018 3028 5.041287 TCATCAGCTTCGACGTATTTAAGG 58.959 41.667 0.00 0.00 0.00 2.69
3021 3031 5.494632 TCTCATCAGCTTCGACGTATTTA 57.505 39.130 0.00 0.00 0.00 1.40
3028 3038 2.606725 CCATGTTCTCATCAGCTTCGAC 59.393 50.000 0.00 0.00 31.15 4.20
3030 3040 2.606725 GACCATGTTCTCATCAGCTTCG 59.393 50.000 0.00 0.00 31.15 3.79
3033 3043 3.708403 TTGACCATGTTCTCATCAGCT 57.292 42.857 0.00 0.00 31.15 4.24
3045 3055 4.530875 AGCTTCCTAAGGATTTGACCATG 58.469 43.478 0.00 0.00 0.00 3.66
3061 3071 5.356470 AGCTCTTCATATGTTTCAAGCTTCC 59.644 40.000 0.00 0.00 35.42 3.46
3062 3072 6.434018 AGCTCTTCATATGTTTCAAGCTTC 57.566 37.500 0.00 0.00 35.42 3.86
3075 3085 8.928448 ACACCAAATATCTCTAAGCTCTTCATA 58.072 33.333 0.00 0.00 0.00 2.15
3091 3101 3.623703 TGCTCTCATGCACACCAAATAT 58.376 40.909 0.00 0.00 38.12 1.28
3095 3105 1.814394 GAATGCTCTCATGCACACCAA 59.186 47.619 0.00 0.00 46.33 3.67
3111 3121 4.524316 TGAGGGCAAATGAACAAGAATG 57.476 40.909 0.00 0.00 0.00 2.67
3113 3123 3.511146 GGATGAGGGCAAATGAACAAGAA 59.489 43.478 0.00 0.00 0.00 2.52
3118 3128 3.294214 AGATGGATGAGGGCAAATGAAC 58.706 45.455 0.00 0.00 0.00 3.18
3143 3153 1.589716 GCGCAGAAGGCCACTCATTT 61.590 55.000 5.01 0.00 40.31 2.32
3160 3170 0.443869 CGACTGACAATTCCCAAGCG 59.556 55.000 0.00 0.00 0.00 4.68
3168 3178 5.423015 ACATTAGCATCTCGACTGACAATT 58.577 37.500 0.00 0.00 0.00 2.32
3180 3190 6.713903 CCAAGTCCAATGATACATTAGCATCT 59.286 38.462 0.00 0.00 32.92 2.90
3183 3193 6.000246 TCCAAGTCCAATGATACATTAGCA 58.000 37.500 0.00 0.00 0.00 3.49
3193 3203 2.905415 AATGGCTCCAAGTCCAATGA 57.095 45.000 0.00 0.00 35.75 2.57
3194 3204 3.512724 AGAAAATGGCTCCAAGTCCAATG 59.487 43.478 0.00 0.00 35.75 2.82
3202 3212 2.627699 GTGGTTGAGAAAATGGCTCCAA 59.372 45.455 0.00 0.00 0.00 3.53
3215 3225 5.245531 TCTGTAGCTTTATTGGTGGTTGAG 58.754 41.667 0.00 0.00 0.00 3.02
3218 3228 5.013183 AGTCTCTGTAGCTTTATTGGTGGTT 59.987 40.000 0.00 0.00 0.00 3.67
3222 3232 6.769512 TGAAAGTCTCTGTAGCTTTATTGGT 58.230 36.000 0.00 0.00 32.67 3.67
3226 3236 8.097038 TGTCAATGAAAGTCTCTGTAGCTTTAT 58.903 33.333 0.00 0.00 32.67 1.40
3286 3296 2.481471 GGCTATCAAGGCGGCCAAC 61.481 63.158 23.09 1.67 43.59 3.77
3302 3312 1.837538 TAAACGCAACTGCACGAGGC 61.838 55.000 1.06 0.00 42.21 4.70
3307 3317 2.993545 TGAACATAAACGCAACTGCAC 58.006 42.857 2.12 0.00 42.21 4.57
3318 3328 5.045651 TCCCTTGAGCTCAGATGAACATAAA 60.046 40.000 17.43 0.00 0.00 1.40
3321 3331 2.842496 TCCCTTGAGCTCAGATGAACAT 59.158 45.455 17.43 0.00 0.00 2.71
3333 3343 2.026822 TCCAACTGAATCTCCCTTGAGC 60.027 50.000 0.00 0.00 38.58 4.26
3338 3348 2.579860 AGCAATCCAACTGAATCTCCCT 59.420 45.455 0.00 0.00 0.00 4.20
3339 3349 2.948315 GAGCAATCCAACTGAATCTCCC 59.052 50.000 0.00 0.00 0.00 4.30
3349 3359 3.376546 GGAAGTGATGAGAGCAATCCAAC 59.623 47.826 0.00 0.00 0.00 3.77
3390 3400 2.672874 GTCGCTGTATGCATTGTTCAGA 59.327 45.455 3.54 0.00 43.06 3.27
3393 3403 3.125146 TCTTGTCGCTGTATGCATTGTTC 59.875 43.478 3.54 0.00 43.06 3.18
3396 3406 2.538333 GCTCTTGTCGCTGTATGCATTG 60.538 50.000 3.54 0.00 43.06 2.82
3407 3417 1.195674 GAAAGGTCAAGCTCTTGTCGC 59.804 52.381 9.20 2.46 41.16 5.19
3416 3426 0.884514 GCCTTCTGGAAAGGTCAAGC 59.115 55.000 5.76 0.00 39.60 4.01
3420 3430 2.278332 AACAGCCTTCTGGAAAGGTC 57.722 50.000 5.76 0.00 44.54 3.85
3436 3446 6.119536 TCAGCTTCTTAAGAACTGGAAAACA 58.880 36.000 28.27 16.37 35.68 2.83
3462 3472 6.303839 AGAAAGGTTAGGCAAGTCATGTAAA 58.696 36.000 0.00 0.00 0.00 2.01
3471 3481 5.734720 TCTACATGAGAAAGGTTAGGCAAG 58.265 41.667 0.00 0.00 0.00 4.01
3472 3482 5.248477 ACTCTACATGAGAAAGGTTAGGCAA 59.752 40.000 0.00 0.00 45.39 4.52
3489 3499 6.248569 AGACTCCCTTTTTGAAACTCTACA 57.751 37.500 0.00 0.00 0.00 2.74
3492 3502 5.510430 ACAAGACTCCCTTTTTGAAACTCT 58.490 37.500 0.00 0.00 31.42 3.24
3500 3510 9.014297 CATTTAGATGTACAAGACTCCCTTTTT 57.986 33.333 0.00 0.00 31.42 1.94
3527 3537 2.500098 TCACAACGGCCTAAGATTAGCT 59.500 45.455 0.00 0.00 0.00 3.32
3528 3538 2.901249 TCACAACGGCCTAAGATTAGC 58.099 47.619 0.00 0.00 0.00 3.09
3529 3539 4.508124 GTCATCACAACGGCCTAAGATTAG 59.492 45.833 0.00 0.00 0.00 1.73
3535 3545 0.981183 AGGTCATCACAACGGCCTAA 59.019 50.000 0.00 0.00 0.00 2.69
3552 3562 3.288092 GCCTTGGGGTATTTCAGTTAGG 58.712 50.000 0.00 0.00 34.45 2.69
3589 3599 1.602311 AGCTCAAGGTTGTCAAGCTG 58.398 50.000 17.64 11.73 41.54 4.24
3594 3604 5.398603 TTTCAAAAAGCTCAAGGTTGTCA 57.601 34.783 0.00 0.00 35.72 3.58
3636 3646 8.950210 TGTAATGTTTCTCCATCTTGAATCTTC 58.050 33.333 0.00 0.00 0.00 2.87
3651 3661 8.336235 TCTTCATAATTCCCCTGTAATGTTTCT 58.664 33.333 0.00 0.00 0.00 2.52
3661 3671 5.472820 GCTGAGAATCTTCATAATTCCCCTG 59.527 44.000 0.00 0.00 34.34 4.45
3688 3698 5.701290 AGTGGATGTTCTTAACAGTTGTAGC 59.299 40.000 0.00 0.00 45.95 3.58
3842 3853 2.686915 CTCCAAGAAGGTGATTGATGCC 59.313 50.000 0.00 0.00 39.02 4.40
3881 3892 0.395586 ACAAAGTGGAAGCAGTGCCA 60.396 50.000 12.58 0.00 0.00 4.92
3882 3893 0.746659 AACAAAGTGGAAGCAGTGCC 59.253 50.000 12.58 0.00 0.00 5.01
3936 3947 1.341531 CTCTGAAACGACACCTCTGGT 59.658 52.381 0.00 0.00 35.62 4.00
3940 3951 2.471743 CGAAACTCTGAAACGACACCTC 59.528 50.000 0.00 0.00 0.00 3.85
3943 3954 2.218075 GTCCGAAACTCTGAAACGACAC 59.782 50.000 0.00 0.00 0.00 3.67
3944 3955 2.466846 GTCCGAAACTCTGAAACGACA 58.533 47.619 0.00 0.00 0.00 4.35
3946 3957 1.269936 GGGTCCGAAACTCTGAAACGA 60.270 52.381 0.00 0.00 0.00 3.85
3947 3958 1.145803 GGGTCCGAAACTCTGAAACG 58.854 55.000 0.00 0.00 0.00 3.60
3948 3959 2.224209 TGAGGGTCCGAAACTCTGAAAC 60.224 50.000 0.00 0.00 39.48 2.78
3950 3961 1.343465 GTGAGGGTCCGAAACTCTGAA 59.657 52.381 0.00 0.00 39.48 3.02
4034 4047 0.601576 ACACACACACACACACACGT 60.602 50.000 0.00 0.00 0.00 4.49
4036 4049 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
4037 4050 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4039 4052 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
4044 4116 1.006832 GAGGACACACACACACACAC 58.993 55.000 0.00 0.00 0.00 3.82
4045 4117 0.610687 TGAGGACACACACACACACA 59.389 50.000 0.00 0.00 0.00 3.72
4076 4148 1.202758 CCTGCCTCTACAACAACACCA 60.203 52.381 0.00 0.00 0.00 4.17
4077 4149 1.523758 CCTGCCTCTACAACAACACC 58.476 55.000 0.00 0.00 0.00 4.16
4094 4166 6.006275 AGCTGATACAAATACATGAACCCT 57.994 37.500 0.00 0.00 0.00 4.34
4122 4194 4.097286 TGGAAACCGGCTATTTATTGAAGC 59.903 41.667 0.00 0.00 35.47 3.86
4157 4230 3.301794 ACAATATCTGGGCATGCTTCA 57.698 42.857 18.92 14.97 0.00 3.02
4161 4234 3.318839 TGCTTTACAATATCTGGGCATGC 59.681 43.478 9.90 9.90 0.00 4.06
4201 4274 8.733458 TCAAGATCAACTTCATTCACTAATTGG 58.267 33.333 0.00 0.00 36.61 3.16
4224 4297 4.862371 AGGGTTTTAAGTCCACTGTTCAA 58.138 39.130 1.50 0.00 0.00 2.69
4230 4303 6.464530 AATAAGGAGGGTTTTAAGTCCACT 57.535 37.500 0.00 0.00 0.00 4.00
4327 4403 9.130312 GCGACTAATTTCTCCTGTACTAATATG 57.870 37.037 0.00 0.00 0.00 1.78
4328 4404 9.080097 AGCGACTAATTTCTCCTGTACTAATAT 57.920 33.333 0.00 0.00 0.00 1.28
4329 4405 8.350722 CAGCGACTAATTTCTCCTGTACTAATA 58.649 37.037 0.00 0.00 0.00 0.98
4330 4406 7.203910 CAGCGACTAATTTCTCCTGTACTAAT 58.796 38.462 0.00 0.00 0.00 1.73
4334 4410 3.552294 GCAGCGACTAATTTCTCCTGTAC 59.448 47.826 0.00 0.00 0.00 2.90
4345 4421 2.679837 CCTGTGAAATGCAGCGACTAAT 59.320 45.455 0.00 0.00 32.93 1.73
4356 4432 6.979817 TGAACATGTCTTTTTCCTGTGAAATG 59.020 34.615 0.00 0.00 40.08 2.32
4366 4442 6.145535 GTGATCCAGTGAACATGTCTTTTTC 58.854 40.000 0.00 0.00 0.00 2.29
4374 4450 2.385013 TCCGTGATCCAGTGAACATG 57.615 50.000 0.00 0.00 31.87 3.21
4377 4453 2.166459 TGAGATCCGTGATCCAGTGAAC 59.834 50.000 9.44 0.00 39.66 3.18
4438 4514 4.832266 TGGTAAACCAACTGATGAGCATTT 59.168 37.500 0.00 0.00 44.35 2.32
4462 4538 3.134623 AGCCATCACCATTCGAGAACATA 59.865 43.478 0.00 0.00 0.00 2.29
4482 4562 6.183360 ACACTTGTGCCATTCTATATGAAAGC 60.183 38.462 0.10 0.00 38.29 3.51
4629 5192 5.975344 CGCTCCGTCTTCTGTTATAATGTTA 59.025 40.000 0.00 0.00 0.00 2.41
4630 5193 4.804139 CGCTCCGTCTTCTGTTATAATGTT 59.196 41.667 0.00 0.00 0.00 2.71
4631 5194 4.097437 TCGCTCCGTCTTCTGTTATAATGT 59.903 41.667 0.00 0.00 0.00 2.71
4632 5195 4.607955 TCGCTCCGTCTTCTGTTATAATG 58.392 43.478 0.00 0.00 0.00 1.90
4633 5196 4.913335 TCGCTCCGTCTTCTGTTATAAT 57.087 40.909 0.00 0.00 0.00 1.28
4640 5207 0.241213 TCAGTTCGCTCCGTCTTCTG 59.759 55.000 0.00 0.00 0.00 3.02
4641 5208 0.959553 TTCAGTTCGCTCCGTCTTCT 59.040 50.000 0.00 0.00 0.00 2.85
4647 5214 1.201965 GCTTGAATTCAGTTCGCTCCG 60.202 52.381 8.41 0.00 39.80 4.63
4676 5303 8.190326 TCCGTATGACATAATACCAGAATCTT 57.810 34.615 0.00 0.00 30.56 2.40
4705 5332 5.821470 GGGCTTAATAACTGTTCCCTTCTAC 59.179 44.000 0.00 0.00 0.00 2.59
4718 5345 9.747293 CTTACTACTAGAAGTGGGCTTAATAAC 57.253 37.037 0.00 0.00 34.61 1.89
4727 5354 7.706100 AGTCTTTCTTACTACTAGAAGTGGG 57.294 40.000 0.00 0.00 33.49 4.61
4730 5357 8.505625 CGTGAAGTCTTTCTTACTACTAGAAGT 58.494 37.037 0.00 0.00 36.40 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.